Query 024670
Match_columns 264
No_of_seqs 247 out of 1359
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2E-16 6.8E-21 119.3 6.2 60 72-131 5-65 (82)
2 4h10_B Circadian locomoter out 99.6 1.1E-15 3.8E-20 112.2 6.8 59 71-129 6-65 (71)
3 1a0a_A BHLH, protein (phosphat 99.5 7.7E-16 2.6E-20 110.7 0.5 52 74-125 3-61 (63)
4 1an4_A Protein (upstream stimu 99.5 1.4E-15 4.9E-20 109.6 1.8 52 74-125 6-63 (65)
5 4h10_A ARYL hydrocarbon recept 99.5 2.5E-15 8.4E-20 111.0 3.0 53 72-124 8-64 (73)
6 4ati_A MITF, microphthalmia-as 99.5 9.9E-15 3.4E-19 117.2 6.8 58 73-130 27-88 (118)
7 1hlo_A Protein (transcription 99.5 1.8E-14 6.2E-19 108.0 6.1 60 72-131 11-72 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 2.2E-14 7.7E-19 108.1 6.6 57 74-130 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 6.7E-14 2.3E-18 106.9 7.2 58 72-129 5-65 (88)
10 3u5v_A Protein MAX, transcript 99.4 1.8E-13 6.2E-18 101.7 4.6 58 73-130 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.4 9.7E-13 3.3E-17 98.7 6.9 57 74-130 2-61 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.2 2E-11 6.7E-16 88.9 5.7 55 72-126 11-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 6.3E-11 2.2E-15 84.2 5.5 53 74-126 3-58 (60)
14 4f3l_A Mclock, circadian locom 99.1 8.4E-11 2.9E-15 109.2 5.6 54 72-125 11-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 3.5E-10 1.2E-14 106.2 5.1 53 72-124 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.7 3E-09 1E-13 77.0 0.3 45 79-123 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.6 7.2E-08 2.5E-12 72.3 5.5 45 85-129 4-52 (83)
18 4aya_A DNA-binding protein inh 98.1 5.7E-06 1.9E-10 63.8 6.0 50 80-129 32-84 (97)
19 1zpv_A ACT domain protein; str 97.4 0.0029 9.8E-08 46.4 11.6 70 156-232 4-73 (91)
20 2nyi_A Unknown protein; protei 97.3 0.00063 2.1E-08 57.8 7.9 74 156-233 92-167 (195)
21 1u8s_A Glycine cleavage system 97.2 0.0032 1.1E-07 52.9 10.9 68 157-232 6-73 (192)
22 1u8s_A Glycine cleavage system 97.0 0.0026 9E-08 53.4 9.1 75 156-233 92-170 (192)
23 2ko1_A CTR148A, GTP pyrophosph 96.9 0.0062 2.1E-07 44.0 9.0 48 156-203 4-51 (88)
24 2nyi_A Unknown protein; protei 96.8 0.0061 2.1E-07 51.6 9.7 69 157-229 5-73 (195)
25 3o1l_A Formyltetrahydrofolate 94.8 0.2 6.9E-06 45.5 10.6 92 157-258 22-115 (302)
26 3n0v_A Formyltetrahydrofolate 94.7 0.21 7.1E-06 45.0 10.4 90 158-258 9-100 (286)
27 3obi_A Formyltetrahydrofolate 94.3 0.22 7.7E-06 44.9 9.7 92 157-258 6-99 (288)
28 3p96_A Phosphoserine phosphata 94.0 0.29 1E-05 45.2 10.1 72 157-234 12-83 (415)
29 3lou_A Formyltetrahydrofolate 93.9 0.26 9E-06 44.5 9.4 94 157-258 10-105 (292)
30 2jhe_A Transcription regulator 93.7 0.11 3.9E-06 41.5 6.0 35 159-193 2-36 (190)
31 3nrb_A Formyltetrahydrofolate 93.3 0.29 9.9E-06 44.1 8.4 90 157-258 7-98 (287)
32 2f1f_A Acetolactate synthase i 93.2 0.33 1.1E-05 40.3 8.0 64 159-230 5-70 (164)
33 2pc6_A Probable acetolactate s 92.3 0.55 1.9E-05 39.1 8.2 65 158-230 5-71 (165)
34 1y7p_A Hypothetical protein AF 89.4 0.82 2.8E-05 39.9 6.8 39 156-194 3-41 (223)
35 2fgc_A Acetolactate synthase, 88.2 1.5 5.2E-05 37.4 7.6 65 158-230 30-96 (193)
36 2f06_A Conserved hypothetical 77.3 12 0.0004 29.1 8.3 42 160-201 75-116 (144)
37 2qmx_A Prephenate dehydratase; 70.8 19 0.00065 32.1 8.9 63 159-228 202-265 (283)
38 2qmw_A PDT, prephenate dehydra 69.0 19 0.00065 31.9 8.4 46 160-205 189-238 (267)
39 3mwb_A Prephenate dehydratase; 67.6 28 0.00095 31.5 9.4 49 156-204 200-250 (313)
40 2f06_A Conserved hypothetical 64.5 24 0.00082 27.2 7.4 35 158-192 7-41 (144)
41 3luy_A Probable chorismate mut 59.1 63 0.0022 29.3 10.1 57 166-229 217-274 (329)
42 2re1_A Aspartokinase, alpha an 57.7 47 0.0016 26.5 8.2 38 158-197 104-144 (167)
43 1sc6_A PGDH, D-3-phosphoglycer 44.8 79 0.0027 29.3 8.5 45 159-203 333-377 (404)
44 1phz_A Protein (phenylalanine 44.2 46 0.0016 31.6 6.8 49 158-207 35-84 (429)
45 2re1_A Aspartokinase, alpha an 42.9 1.1E+02 0.0037 24.3 8.1 46 158-203 26-73 (167)
46 2dt9_A Aspartokinase; protein- 42.9 99 0.0034 24.4 7.9 34 158-191 17-51 (167)
47 3mtj_A Homoserine dehydrogenas 39.8 71 0.0024 30.1 7.4 31 158-188 360-390 (444)
48 2dtj_A Aspartokinase; protein- 37.6 90 0.0031 25.1 6.9 36 158-193 16-52 (178)
49 3p96_A Phosphoserine phosphata 36.7 2.3E+02 0.008 25.3 12.5 90 158-256 102-192 (415)
50 2dtj_A Aspartokinase; protein- 35.0 1.2E+02 0.0042 24.2 7.4 36 158-195 96-134 (178)
51 3s1t_A Aspartokinase; ACT doma 33.6 1.9E+02 0.0065 23.4 8.3 40 164-203 24-66 (181)
52 4go7_X Aspartokinase; transfer 32.9 1.5E+02 0.0053 24.7 7.8 47 157-203 35-85 (200)
53 2dt9_A Aspartokinase; protein- 30.7 1.7E+02 0.0058 23.0 7.4 36 158-195 96-134 (167)
54 1pd7_B MAD1; PAH2, SIN3, eukar 27.5 80 0.0027 18.1 3.3 21 105-125 2-22 (26)
55 2wt7_A Proto-oncogene protein 26.8 1E+02 0.0034 20.9 4.6 15 82-96 2-16 (63)
56 1xkm_B Distinctin chain B; por 26.8 74 0.0025 17.8 3.1 19 109-127 4-22 (26)
57 3ab4_A Aspartokinase; aspartat 26.2 3E+02 0.01 25.2 9.2 37 157-193 264-301 (421)
58 1p3q_Q VPS9P, vacuolar protein 25.2 42 0.0015 22.6 2.3 25 79-103 3-27 (54)
59 3k5p_A D-3-phosphoglycerate de 22.2 3.2E+02 0.011 25.4 8.6 41 158-198 344-384 (416)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=2e-16 Score=119.35 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=55.6
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVPPN-GKMDKATLLAEVIRQVKELKTNAIEASKG 131 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-~k~dkasiL~~ai~yik~Lq~~~~~l~~~ 131 (264)
..+.+|+.+||+||++||+.|.+|++|||+. .|+||++||.+||+||++||.+++.|..+
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999987 89999999999999999999999988653
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=112.19 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=52.8
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 024670 71 MVALKNHSEAERRRRERINAHLDTLRGLVPPN-GKMDKATLLAEVIRQVKELKTNAIEAS 129 (264)
Q Consensus 71 ~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-~k~dkasiL~~ai~yik~Lq~~~~~l~ 129 (264)
...+.+|+.+||+||++||+.|.+|++|||.. .|+||++||.+||+||++||.++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34568999999999999999999999999964 699999999999999999999876543
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=7.7e-16 Score=110.69 Aligned_cols=52 Identities=31% Similarity=0.507 Sum_probs=47.4
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPPN-------GKMDKATLLAEVIRQVKELKTNA 125 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-------~k~dkasiL~~ai~yik~Lq~~~ 125 (264)
+.+|+.+||+||++||..|.+|++|||+. .|.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999954 56679999999999999999865
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.4e-15 Score=109.59 Aligned_cols=52 Identities=29% Similarity=0.525 Sum_probs=48.1
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPPNG------KMDKATLLAEVIRQVKELKTNA 125 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~------k~dkasiL~~ai~yik~Lq~~~ 125 (264)
..+|+.+||+||++||+.|.+|++|||.+. |++|++||.+||+||++||++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999764 7899999999999999999764
No 5
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=2.5e-15 Score=111.05 Aligned_cols=53 Identities=38% Similarity=0.622 Sum_probs=48.7
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTN 124 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~k~dkasiL~~ai~yik~Lq~~ 124 (264)
.++.+|+.+||+||++||+.|.+|++|||.+ .|+||++||+.||+||+.||.-
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 4568999999999999999999999999965 7999999999999999999853
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.53 E-value=9.9e-15 Score=117.16 Aligned_cols=58 Identities=29% Similarity=0.459 Sum_probs=50.8
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTNAIEASK 130 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~k~dkasiL~~ai~yik~Lq~~~~~l~~ 130 (264)
.+.+|+.+||+||++||++|.+|++|||++ .|++|++||.+||+||++||.+++.|..
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999976 3678999999999999999999998865
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=1.8e-14 Score=107.96 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=55.1
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVPPN--GKMDKATLLAEVIRQVKELKTNAIEASKG 131 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~--~k~dkasiL~~ai~yik~Lq~~~~~l~~~ 131 (264)
..+.+|+..||+||.+||+.|..|+++||.. .|++|++||..||+||++|+.++++|..+
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999975 69999999999999999999999988653
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.50 E-value=2.2e-14 Score=108.06 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=52.6
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPP--NGKMDKATLLAEVIRQVKELKTNAIEASK 130 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~--~~k~dkasiL~~ai~yik~Lq~~~~~l~~ 130 (264)
+.+|+..||+||.+||+.|..|+++||. ..|++|++||..||+||++|+.++++|..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999997 48999999999999999999998877654
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=6.7e-14 Score=106.86 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=52.6
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAIEAS 129 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dkasiL~~ai~yik~Lq~~~~~l~ 129 (264)
..+..|+..||+||..||+.|..|+.+||.. .|++|++||.+||+||++|+.+.+.+.
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999974 699999999999999999999876653
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.39 E-value=1.8e-13 Score=101.74 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=49.2
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHhc
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPP---NGKM-DKATLLAEVIRQVKELKTNAIEASK 130 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~---~~k~-dkasiL~~ai~yik~Lq~~~~~l~~ 130 (264)
.+..|+..||+||..||+.|.+|+.+||. ..|. .|.+||..||+||+.||+++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999995 3455 6889999999999999999998764
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.36 E-value=9.7e-13 Score=98.73 Aligned_cols=57 Identities=28% Similarity=0.485 Sum_probs=51.4
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAIEASK 130 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dkasiL~~ai~yik~Lq~~~~~l~~ 130 (264)
+..|+..||+||..||+.|..|+++||.. .|+.|++||..|++||++|+.+.+++..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999964 6889999999999999999998876643
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.19 E-value=2e-11 Score=88.89 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=49.5
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVPPN--GKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~--~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
..+..|+..||+|+..||+.|..||.+||.. .|+.|..||..||+||..|++.++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999963 789999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.13 E-value=6.3e-11 Score=84.18 Aligned_cols=53 Identities=28% Similarity=0.265 Sum_probs=48.1
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
+..|+..||+|+..||+.|..||.+||.. .|+.|..+|..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999964 588999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.07 E-value=8.4e-11 Score=109.22 Aligned_cols=54 Identities=26% Similarity=0.474 Sum_probs=43.4
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCC-CCCCCChhhHHHHHHHHHHHHHHHH
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVP-PNGKMDKATLLAEVIRQVKELKTNA 125 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP-~~~k~dkasiL~~ai~yik~Lq~~~ 125 (264)
..+.+|+.+||+||++||..|.+|++||| +..|+||++||..||.||+.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 34578999999999999999999999999 5689999999999999999998753
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.96 E-value=3.5e-10 Score=106.23 Aligned_cols=53 Identities=38% Similarity=0.624 Sum_probs=48.9
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVP----PNGKMDKATLLAEVIRQVKELKTN 124 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP----~~~k~dkasiL~~ai~yik~Lq~~ 124 (264)
.++.+|+.+||+||++||+.|.+|+.||| ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 34589999999999999999999999999 568999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.66 E-value=3e-09 Score=76.96 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 024670 79 EAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKT 123 (264)
Q Consensus 79 ~~ER~RR~~in~~~~~Lr~lvP~~---~k~dkasiL~~ai~yik~Lq~ 123 (264)
+.||+|+..||+.|..||.+||.. .|+.|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 469999999999999999999964 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.57 E-value=7.2e-08 Score=72.32 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=39.9
Q ss_pred HHHHHHhHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 024670 85 RERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTNAIEAS 129 (264)
Q Consensus 85 R~~in~~~~~Lr~lvP~~----~k~dkasiL~~ai~yik~Lq~~~~~l~ 129 (264)
|..||++|.+|..|||.+ .|.+|++||..||+||++||+..+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~ 52 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 52 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 578999999999999999998766543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.07 E-value=5.7e-06 Score=63.78 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 024670 80 AERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAIEAS 129 (264)
Q Consensus 80 ~ER~RR~~in~~~~~Lr~lvP~~---~k~dkasiL~~ai~yik~Lq~~~~~l~ 129 (264)
.||.|-..+|+-|..||.+||.. .|+.|..+|.-||+||..|+.-+++-.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35788889999999999999954 688999999999999999999887643
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.40 E-value=0.0029 Score=46.43 Aligned_cols=70 Identities=9% Similarity=0.089 Sum_probs=52.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
..+.+++.|+|+||++.+|.++|.+.|..|...+..+..+.+.-.+.+... . ....+.|.++|.++-...
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~-~------~~~l~~l~~~L~~~~~~~ 73 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-E------KQDFTYLRNEFEAFGQTL 73 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-S------CCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC-C------CCCHHHHHHHHHHHHHHc
Confidence 356789999999999999999999999999999998877766555555221 1 123467888887766543
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.30 E-value=0.00063 Score=57.83 Aligned_cols=74 Identities=15% Similarity=0.015 Sum_probs=56.5
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC--CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcC
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 233 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g--~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~ 233 (264)
..+.|+|.|+||||++..|.++|.++|+.|..++..|.+ .+..++|++...-... .... +.|+++|..+.....
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~---~~~~-~~l~~~l~~~a~~l~ 167 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP---FPLY-QEVVTALSRVEEEFG 167 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE---GGGH-HHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC---CCcc-HHHHHHHHHHHHHcC
Confidence 356689999999999999999999999999999999887 4445666664432211 1234 789999988877654
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.17 E-value=0.0032 Score=52.85 Aligned_cols=68 Identities=9% Similarity=0.194 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
.+.|.+.|+||||++..|..+|.++|+.|+.+++.+..+.+.-.|++... . ...+.|+++|..+....
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~----~----~~~~~l~~~L~~~~~~~ 73 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS----P----SNITRVETTLPLLGQQH 73 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC----H----HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC----C----CCHHHHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999888877666666321 1 24577888888777644
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.05 E-value=0.0026 Score=53.38 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=55.2
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCC----eEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG----RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~----r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
..+.|++.|+|+||++.+|.++|.++|+.|..+...|.+. +..++|++...-... .....+.|+++|..+...
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~---~~~~~~~l~~~l~~~~~~ 168 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD---SGCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC---TTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC---CCCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999998873 445566664432211 123467899999888776
Q ss_pred cC
Q 024670 232 AS 233 (264)
Q Consensus 232 ~~ 233 (264)
.+
T Consensus 169 ~~ 170 (192)
T 1u8s_A 169 LD 170 (192)
T ss_dssp HT
T ss_pred hC
Confidence 54
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.92 E-value=0.0062 Score=43.96 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=40.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
+.+.+.+.+.|+||+|.+|.++|.+.|+.|.+..+.+.++.+..+|.+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v 51 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE
Confidence 567788999999999999999999999999999998877644434444
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.84 E-value=0.0061 Score=51.65 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
.+.|.|.|+||||+++.|..+|.++|+.|+.+++.+..+.+.=.|++... ... .....+.|+++|..++
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~-~~~---~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN-AKD---GKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SSS---SHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec-Ccc---chhHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999888776546666322 111 1123456666666544
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=94.76 E-value=0.2 Score=45.54 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 234 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~ 234 (264)
.+.+++.|+||||+...|.+.|.++|..|+.++-.+. .|++.- .+.-.... .....+.|+++|..+-..+..
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfM--r~~~~~~~----~~~~~~~L~~~l~~la~~l~m 95 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFM--RHEIRADT----LPFDLDGFREAFTPIAEEFSM 95 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEE--EEEEEGGG----SSSCHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEE--EEEEecCC----CCCCHHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999999999987754 454321 22111110 113467889998887766554
Q ss_pred CCCCCCCCCCCCCcceeEeeecCC
Q 024670 235 SPEYSPRTTLPNKRQRISFLDSSS 258 (264)
Q Consensus 235 s~~~~~~~~~~~kr~r~~~~~~~~ 258 (264)
.-.... ..++.|+-+|=|.+
T Consensus 96 ~~~l~~----~~~~~ri~vl~Sg~ 115 (302)
T 3o1l_A 96 DWRITD----SAQKKRVVLMASRE 115 (302)
T ss_dssp EEEEEE----TTSCCEEEEEECSC
T ss_pred eeeecc----cCCCcEEEEEEeCC
Confidence 321100 12235787776644
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.69 E-value=0.21 Score=45.03 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE--ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCCC
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 235 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is--t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~s 235 (264)
+.+++.|+||||+...|.+.|.++|..|...+-. ...+++. +.+.-.... ....+.|+++|..+-..+...
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~-----~~~~~~L~~~f~~la~~l~m~ 81 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFF--IRVEFRQPD-----DFDEAGFRAGLAERSEAFGMA 81 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCS-----SCCHHHHHHHHHHHHGGGTCE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeE--EEEEEecCC-----CCCHHHHHHHHHHHHHHcCCE
Confidence 4578999999999999999999999999999877 3445432 122111111 123578899988776655443
Q ss_pred CCCCCCCCCCCCcceeEeeecCC
Q 024670 236 PEYSPRTTLPNKRQRISFLDSSS 258 (264)
Q Consensus 236 ~~~~~~~~~~~kr~r~~~~~~~~ 258 (264)
-.. . ...++.|+-+|=|-+
T Consensus 82 ~~l--~--~~~~~~ri~vl~Sg~ 100 (286)
T 3n0v_A 82 FEL--T--APNHRPKVVIMVSKA 100 (286)
T ss_dssp EEE--E--CTTCCCEEEEEESSC
T ss_pred EEe--e--cCCCCcEEEEEEeCC
Confidence 211 0 122336787776644
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.30 E-value=0.22 Score=44.87 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=58.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE--ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 234 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is--t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~ 234 (264)
.+.+++.|+||||+...|.+.|.++|..|...+-. ...|++.-...+ ..... ....+.|+++|..+-..+..
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~~-----~~~~~~L~~~f~~la~~~~m 79 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVF-NAAAK-----VIPLASLRTGFGVIAAKFTM 79 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EESSC-----CCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEE-EcCCC-----CCCHHHHHHHHHHHHHHcCC
Confidence 35578999999999999999999999999999875 334543211122 11111 12357888898877665544
Q ss_pred CCCCCCCCCCCCCcceeEeeecCC
Q 024670 235 SPEYSPRTTLPNKRQRISFLDSSS 258 (264)
Q Consensus 235 s~~~~~~~~~~~kr~r~~~~~~~~ 258 (264)
.-.. . ...++.|+-+|=|-+
T Consensus 80 ~~~l--~--~~~~~~ri~vl~Sg~ 99 (288)
T 3obi_A 80 GWHM--R--DRETRRKVMLLVSQS 99 (288)
T ss_dssp EEEE--E--ETTSCEEEEEEECSC
T ss_pred EEEe--e--ccCCCcEEEEEEcCC
Confidence 3211 0 122346788776654
No 28
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=93.97 E-value=0.29 Score=45.22 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=52.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 234 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~ 234 (264)
.+.|++.|+||||+...|...|.++|..|+.++-.+.+|++.=...+.. .. .....+.|+++|..+-.....
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~---~~---~~~~~~~l~~~l~~~~~~~~~ 83 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCC---PA---DVADGPALRHDVEAAIRKVGL 83 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEE---CH---HHHTSHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEe---cC---CcCCHHHHHHHHHHHHHHcCe
Confidence 4568999999999999999999999999999999888886643333311 10 111236888888877665544
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=93.92 E-value=0.26 Score=44.52 Aligned_cols=94 Identities=10% Similarity=0.109 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe--cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 234 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist--~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~ 234 (264)
.+.+++.|+||||+...|.+.|.++|..|..++-.+ ..|++. +.+.-...... .....+.|+++|..+-..+..
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~~--~~~~~~~L~~~f~~la~~~~m 85 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF--VRCVFHATDDA--DALRVDALRREFEPIAERFRM 85 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE--EEEEEEECC------CCHHHHHHHHHHHHHHHTC
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE--EEEEEEccCcc--cCCCHHHHHHHHHHHHHhcCc
Confidence 355789999999999999999999999999998773 455432 12211111000 012357888888887666554
Q ss_pred CCCCCCCCCCCCCcceeEeeecCC
Q 024670 235 SPEYSPRTTLPNKRQRISFLDSSS 258 (264)
Q Consensus 235 s~~~~~~~~~~~kr~r~~~~~~~~ 258 (264)
.-.... ..++.|+-+|=|-+
T Consensus 86 ~~~l~~----~~~~~ri~vl~Sg~ 105 (292)
T 3lou_A 86 QWAIHD----VAARPKVLIMVSKL 105 (292)
T ss_dssp EEEEEE----TTSCCEEEEEECSC
T ss_pred EEEeec----cCCCCEEEEEEcCC
Confidence 322101 12236787776544
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=93.73 E-value=0.11 Score=41.53 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=33.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
.|+|.|.||+|+|.+|+++|.+.++.+..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 57899999999999999999999999999999777
No 31
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=93.25 E-value=0.29 Score=44.12 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=56.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE--ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 234 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is--t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~ 234 (264)
.+.+++.|+||||+...|.+.|.++|..|+.++-. ...|++. +.+.-.... ...+.|+++|..+-..+..
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~------~~~~~L~~~f~~la~~~~m 78 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFF--MRVSVEIPV------AGVNDFNSAFGKVVEKYNA 78 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCC---------CHHHHHHHHHHGGGTC
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEE--EEEEEEcCC------CCHHHHHHHHHHHHHHcCC
Confidence 35678999999999999999999999999999875 3345432 122111111 1134788888777665544
Q ss_pred CCCCCCCCCCCCCcceeEeeecCC
Q 024670 235 SPEYSPRTTLPNKRQRISFLDSSS 258 (264)
Q Consensus 235 s~~~~~~~~~~~kr~r~~~~~~~~ 258 (264)
.-.. . ...++.|+-+|=|-+
T Consensus 79 ~~~l--~--~~~~~~ri~vl~Sg~ 98 (287)
T 3nrb_A 79 EWWF--R--PRTDRKKVVIMVSKF 98 (287)
T ss_dssp EEEE--E--ETTCCCEEEEEECSC
T ss_pred eeEe--e--ccCCCcEEEEEEeCC
Confidence 3111 0 012336788776654
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=93.16 E-value=0.33 Score=40.31 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=47.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC--CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g--~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
.+++..+++||+|.+|...|...|+.|.+..+.+.. +...-+|.+.. +....+.|.++|.++.+
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCCCC
Confidence 467889999999999999999999999999987543 55555556631 12345677788877654
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=92.26 E-value=0.55 Score=39.06 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC--CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g--~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
-.+.+..+++||.|.+|...|...|+.|.+..+.... +...-+|.+..+ ....+.|..+|.++++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--------~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--------DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--------HHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--------HHHHHHHHHHhcCCCC
Confidence 4567889999999999999999999999999886443 555555566321 2345778888887654
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=89.43 E-value=0.82 Score=39.88 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=30.9
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
..+.+.+.+.||+|+|.+|+++|.+.+..|...+..+..
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 456788999999999999999999999999999998864
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=88.18 E-value=1.5 Score=37.35 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE-ecC-CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is-t~g-~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
-.+.+..+++||.|.+|...|...|+.|.+..+. |.+ +..+-+|++..+ ....+.|.++|.++++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCc
Confidence 4567888999999999999999999999998886 434 455545566322 1245778888877654
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=77.29 E-value=12 Score=29.10 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=30.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEE
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVI 201 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF 201 (264)
+-+.-+++||.+.+++++|.+.|+.|.....+..+++...+|
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 344567999999999999999999996655442345444333
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=70.85 E-value=19 Score=32.13 Aligned_cols=63 Identities=8% Similarity=0.052 Sum_probs=44.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCe-EEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r-~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
.+-+..+++||.|.+++..|...|+.+++-+.-...+. ..++|++ ++.+... -..++++|..+
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~------d~~v~~aL~~L 265 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRE------DQNVHNALENL 265 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTT------SHHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCC------cHHHHHHHHHH
Confidence 33445579999999999999999999999998755543 4678888 3432211 13456666654
No 38
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=68.98 E-value=19 Score=31.85 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=36.7
Q ss_pred EEEEc---CCCCChHHHHHHHHHhCCCeeeEEEEEecCCe-EEEEEEEee
Q 024670 160 ASICC---EYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTS 205 (264)
Q Consensus 160 vev~c---~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r-~~~vF~v~~ 205 (264)
+-+.. +++||.|.+++..|...|+.+++-+.-...+. ..+.|++.-
T Consensus 189 l~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 189 LMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp EEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred EEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 34556 78999999999999999999999998655443 467888843
No 39
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=67.61 E-value=28 Score=31.53 Aligned_cols=49 Identities=6% Similarity=0.015 Sum_probs=37.7
Q ss_pred eeEEEEEEcC-CCCChHHHHHHHHHhCCCeeeEEEEEecCCe-EEEEEEEe
Q 024670 156 FLYKASICCE-YRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFT 204 (264)
Q Consensus 156 ~~V~vev~c~-~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r-~~~vF~v~ 204 (264)
....|-+..+ ++||.|.+++..|...|+.+++.+.-...+. ..++|++.
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD 250 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSID 250 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEE
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEE
Confidence 3444555665 8999999999999999999999998654443 36788883
No 40
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=64.49 E-value=24 Score=27.24 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEIST 192 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist 192 (264)
-.+.+..+++||.+.+|+.+|.+.|+.|....+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 35677889999999999999999999998876653
No 41
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=59.14 E-value=63 Score=29.34 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEEEEecCCeE-EEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 166 YRPELMSDLRQALDALPLKMLKAEISTLGGRL-KNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~-~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
++||.|++++..|...|+..++-+.-...++. .++|++ ++.+. .. -..+++||..+-
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~-~~-----d~~v~~AL~~L~ 274 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAA-PW-----EERFRDALVEIA 274 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSC-TT-----SHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCC-cC-----CHHHHHHHHHHH
Confidence 68999999999999999999999987655544 678887 34322 11 134566666653
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=57.69 E-value=47 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=29.3
Q ss_pred EEEEEEcCC---CCChHHHHHHHHHhCCCeeeEEEEEecCCeE
Q 024670 158 YKASICCEY---RPELMSDLRQALDALPLKMLKAEISTLGGRL 197 (264)
Q Consensus 158 V~vev~c~~---r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~ 197 (264)
..|.+.... .||.+.+++++|.+.|+.|... +|....+
T Consensus 104 a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i--stse~~i 144 (167)
T 2re1_A 104 CKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI--STSEIKV 144 (167)
T ss_dssp EEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE--EECSSEE
T ss_pred EEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE--EcccCEE
Confidence 456677764 8999999999999999999874 4555444
No 43
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=44.84 E-value=79 Score=29.26 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=36.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
++-+.-.++||.+.+|...|-+.++.|..-...+.++...-++-+
T Consensus 333 rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 333 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 344566799999999999999999999999999988866544444
No 44
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=44.19 E-value=46 Score=31.56 Aligned_cols=49 Identities=2% Similarity=-0.078 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCC-eEEEEEEEeecC
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCK 207 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~-r~~~vF~v~~~~ 207 (264)
+.|-+..+++||.|.+++..|...|+.+++.+.-...+ .-...|+| .+.
T Consensus 35 TSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV-D~e 84 (429)
T 1phz_A 35 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLD 84 (429)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBC
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE-EEe
Confidence 33445557889999999999999999999998865543 34677888 443
No 45
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=42.91 E-value=1.1e+02 Score=24.25 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=30.8
Q ss_pred EEEEEEc-CCCCChHHHHHHHHHhCCCeeeEEEEEec-CCeEEEEEEE
Q 024670 158 YKASICC-EYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVF 203 (264)
Q Consensus 158 V~vev~c-~~r~glL~~Il~aLe~lgL~V~~A~Ist~-g~r~~~vF~v 203 (264)
..|++.. +++||.+.+|+++|.+.|+.|.....+.. +|...-.|.+
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 4456663 78999999999999999998877654321 3333234555
No 46
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=42.91 E-value=99 Score=24.45 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=25.8
Q ss_pred EEEEEEc-CCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 158 YKASICC-EYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 158 V~vev~c-~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
..|.+.. +++||.+.+|+++|.+.|+.|.-...+
T Consensus 17 a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 17 AQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 3344444 788999999999999999988765433
No 47
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=39.76 E-value=71 Score=30.14 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEE
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKA 188 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A 188 (264)
..+++.+.|+||.|.+|..+|.++++.|.+.
T Consensus 360 yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~ 390 (444)
T 3mtj_A 360 YYLRLRAFDRPGVLADITRILADSSISIDAM 390 (444)
T ss_dssp EEEEEEEC-CCHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEecCcccHHHHHHHHHHhcCCceeEE
Confidence 5678899999999999999999999998665
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=37.56 E-value=90 Score=25.09 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=27.1
Q ss_pred EEEEEE-cCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 158 YKASIC-CEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 158 V~vev~-c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
..|++. -+++||.+.+|++.|.+.|+.|.-...++.
T Consensus 16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 344553 478999999999999999987766655544
No 49
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=36.69 E-value=2.3e+02 Score=25.34 Aligned_cols=90 Identities=11% Similarity=0.028 Sum_probs=53.2
Q ss_pred EEEEEEcCC-CCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCCCC
Q 024670 158 YKASICCEY-RPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPSP 236 (264)
Q Consensus 158 V~vev~c~~-r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~s~ 236 (264)
..+.+...+ +++++.+|...|.++|+.+.....-+......--|++.... .....++++|..+......-.
T Consensus 102 ~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~--------~~~~~l~~~l~~l~~~~~vD~ 173 (415)
T 3p96_A 102 HTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPP--------GADEALRTALNRVSSEEHVDV 173 (415)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCT--------TCHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCC--------CCHHHHHHHHHHHhhhcCcCc
Confidence 345677777 89999999999999999998877666333222225552221 124577778777765443321
Q ss_pred CCCCCCCCCCCcceeEeeec
Q 024670 237 EYSPRTTLPNKRQRISFLDS 256 (264)
Q Consensus 237 ~~~~~~~~~~kr~r~~~~~~ 256 (264)
...+. ....+..|.-+||-
T Consensus 174 ~v~~~-~~~~~~~k~viFD~ 192 (415)
T 3p96_A 174 AVEDY-TLERRAKRLIVFDV 192 (415)
T ss_dssp EEEEC-STTTTCCCEEEECT
T ss_pred ccccc-cccccCCcEEEEcC
Confidence 11111 11233356667763
No 50
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=34.99 E-value=1.2e+02 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.3
Q ss_pred EEEEEEcC---CCCChHHHHHHHHHhCCCeeeEEEEEecCC
Q 024670 158 YKASICCE---YRPELMSDLRQALDALPLKMLKAEISTLGG 195 (264)
Q Consensus 158 V~vev~c~---~r~glL~~Il~aLe~lgL~V~~A~Ist~g~ 195 (264)
.+|.+... +.||.+.+++++|.+.|+.|.-. ++..-
T Consensus 96 a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i--stSe~ 134 (178)
T 2dtj_A 96 GKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI--STSEI 134 (178)
T ss_dssp EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE--EEETT
T ss_pred EEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE--EcCCC
Confidence 34555664 67899999999999999999774 34443
No 51
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=33.59 E-value=1.9e+02 Score=23.37 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=28.4
Q ss_pred cCCCCChHHHHHHHHHhCCCeeeEEEEEec---CCeEEEEEEE
Q 024670 164 CEYRPELMSDLRQALDALPLKMLKAEISTL---GGRLKNVIVF 203 (264)
Q Consensus 164 c~~r~glL~~Il~aLe~lgL~V~~A~Ist~---g~r~~~vF~v 203 (264)
-+++||.+.+|+++|.+.++.|.-..-+.. .|..--.|.+
T Consensus 24 ~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv 66 (181)
T 3s1t_A 24 LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTC 66 (181)
T ss_dssp EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEE
Confidence 468999999999999999998865542212 3444445555
No 52
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=32.93 E-value=1.5e+02 Score=24.67 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=31.1
Q ss_pred eEEEEEE-cCCCCChHHHHHHHHHhCCCeeeEEE--EEec-CCeEEEEEEE
Q 024670 157 LYKASIC-CEYRPELMSDLRQALDALPLKMLKAE--ISTL-GGRLKNVIVF 203 (264)
Q Consensus 157 ~V~vev~-c~~r~glL~~Il~aLe~lgL~V~~A~--Ist~-g~r~~~vF~v 203 (264)
..+|.+. .+++||++.+|+.+|.+.++.|.-.. ++.. ++...-+|.+
T Consensus 35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv 85 (200)
T 4go7_X 35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTC 85 (200)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEec
Confidence 3444544 58999999999999999998876553 2322 3344444555
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=30.73 E-value=1.7e+02 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=27.0
Q ss_pred EEEEEEcC---CCCChHHHHHHHHHhCCCeeeEEEEEecCC
Q 024670 158 YKASICCE---YRPELMSDLRQALDALPLKMLKAEISTLGG 195 (264)
Q Consensus 158 V~vev~c~---~r~glL~~Il~aLe~lgL~V~~A~Ist~g~ 195 (264)
.+|.+... ..||.+.+++++|.+.|+.|.-. +|..-
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i--s~Se~ 134 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI--ATSEV 134 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE--EECSS
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE--EccCC
Confidence 45566665 48999999999999999999444 34444
No 54
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=27.54 E-value=80 Score=18.12 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.3
Q ss_pred CChhhHHHHHHHHHHHHHHHH
Q 024670 105 MDKATLLAEVIRQVKELKTNA 125 (264)
Q Consensus 105 ~dkasiL~~ai~yik~Lq~~~ 125 (264)
++..-+|-+|.+|+....++.
T Consensus 2 ~~nvq~LLeAAeyLErrEre~ 22 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERREREA 22 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 456778999999998777643
No 55
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.83 E-value=1e+02 Score=20.90 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHHHHH
Q 024670 82 RRRRERINAHLDTLR 96 (264)
Q Consensus 82 R~RR~~in~~~~~Lr 96 (264)
|++|.+..+++.+-+
T Consensus 2 kr~rrrerNR~AA~r 16 (63)
T 2wt7_A 2 KRRIRRERNKMAAAK 16 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHH
Confidence 333333444444443
No 56
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.82 E-value=74 Score=17.80 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 024670 109 TLLAEVIRQVKELKTNAIE 127 (264)
Q Consensus 109 siL~~ai~yik~Lq~~~~~ 127 (264)
+-|-+|-+|+.+|..+++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677899999999988764
No 57
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=26.19 E-value=3e+02 Score=25.18 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=28.7
Q ss_pred eEEEEEE-cCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 157 LYKASIC-CEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 157 ~V~vev~-c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
.+.|++. .++++|.+.+|+++|.+.++.|.-...++.
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s 301 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVF 301 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCc
Confidence 3455666 478899999999999999999877654443
No 58
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.16 E-value=42 Score=22.61 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHccCCCCC
Q 024670 79 EAERRRRERINAHLDTLRGLVPPNG 103 (264)
Q Consensus 79 ~~ER~RR~~in~~~~~Lr~lvP~~~ 103 (264)
+++|-+|...++-+.+|+.+.|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 5788888999999999999999754
No 59
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=22.22 E-value=3.2e+02 Score=25.36 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEE
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLK 198 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~ 198 (264)
.+|-+.-.+.||.|.+|..+|.+.|+.|..-...|.++...
T Consensus 344 ~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y 384 (416)
T 3k5p_A 344 TRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY 384 (416)
T ss_dssp EEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE
Confidence 56666778899999999999999999999988888888654
Done!