BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024671
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80574|DAPB1_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic
OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2
Length = 347
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 217/264 (82%), Positives = 248/264 (93%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MGKAVIKAAD+AG+ +VP+SFG+ E GQ+VEVCGKEI VHG ++RE VL+SVF+K+P +
Sbjct: 84 MGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPEL 143
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
IVVDYT+P+AVN NAELYSKVGVPFVMGTTGGDR +L+ET+E + +YAVISPQMGKQVVA
Sbjct: 144 IVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVISPQMGKQVVA 203
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIMAEQFPGAFSGYSL V+ESHQA KLD SGTAKAVISCFQ+LGVS+DMDQIQ+I
Sbjct: 204 FLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQIQLI 263
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
RDPKQQ+EMVGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVCGRSIYAEGTVDAVLFL+
Sbjct: 264 RDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAVLFLA 323
Query: 241 KKVQLKADKRIYNMIDVLREGNMR 264
KK++LKAD+RIYNMIDVLREGNMR
Sbjct: 324 KKIRLKADQRIYNMIDVLREGNMR 347
>sp|Q8LB01|DAPB2_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic
OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1
Length = 349
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 216/264 (81%), Positives = 247/264 (93%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MGKAVIKAAD+AG+ +VP SFG+ EE+GQ VEVCGKEI VHG ++RE VL+SVF+KYP +
Sbjct: 86 MGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLSSVFEKYPEL 145
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
IVVDYT+P+AVN NAELY KVGVPFVMGTTGGDR RL++T+E S +YAVISPQMGKQVVA
Sbjct: 146 IVVDYTIPSAVNDNAELYGKVGVPFVMGTTGGDRTRLYKTVEESKIYAVISPQMGKQVVA 205
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIM+EQFPGAF+GYSL+V+ESHQA KLD SGTAKAVISCFQKLGVS+DMDQIQ+I
Sbjct: 206 FLAAMEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMDQIQLI 265
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
RDPKQQ+E+VGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVCGRSIYAEGTVDAVLFL+
Sbjct: 266 RDPKQQIEVVGVPEEHVSGHAFHLYHLTSPDKTVSFEFQHNVCGRSIYAEGTVDAVLFLA 325
Query: 241 KKVQLKADKRIYNMIDVLREGNMR 264
KK++ KA+KRIYNMIDVLREGNMR
Sbjct: 326 KKIRSKAEKRIYNMIDVLREGNMR 349
>sp|Q67W29|DAPB1_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 1,
chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1
PE=2 SV=1
Length = 343
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/264 (73%), Positives = 230/264 (87%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MGKAV +AA +AGL+LVPVSF E KVE+C +EI + S+ ES+L S+ YP+M
Sbjct: 80 MGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDM 139
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
IVVDYTVP AVN NAELY K+G+PFVMGTTGG+R LH+T+E++NVYAVISPQMGKQVVA
Sbjct: 140 IVVDYTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVA 199
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIMAEQFPGAFSGY L+V+ESHQA KLD SGTAKAVISCFQKLGVSF++++++ +
Sbjct: 200 FLAAMEIMAEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQV 259
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
RDP++QL +VGVPEEHL GHAFHMYHLTSPD+TVSFEFQHNVCGRSIYAEGTVDA LFL
Sbjct: 260 RDPQEQLTLVGVPEEHLSGHAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLH 319
Query: 241 KKVQLKADKRIYNMIDVLREGNMR 264
KK+Q A+K++Y+MIDVLREGNMR
Sbjct: 320 KKIQSGANKKLYDMIDVLREGNMR 343
>sp|Q10P67|DAPB2_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 2,
chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2
PE=2 SV=1
Length = 325
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 180/264 (68%), Positives = 226/264 (85%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MG +V +A ++GL LVP+SF + + + V V +++++G S RE VL+SV D++P++
Sbjct: 62 MGLSVAEAVTSSGLHLVPISFSSRDTLDRTVRVGHTDVRIYGPSAREDVLSSVIDEFPDV 121
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
+VVDYT P +VN NAELY K+G+PFVMGTTGGDR L++++++SN YA+ISPQMGKQVVA
Sbjct: 122 VVVDYTAPDSVNANAELYCKLGLPFVMGTTGGDRQLLYKSVQDSNNYALISPQMGKQVVA 181
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIMAEQFPGAFSGY L+VLESHQAGKLD SGTAKAVI+CF+KLGVS+DM+++ I
Sbjct: 182 FLAAMEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMNRMVKI 241
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLS 240
RDP+QQLEMVGVPEEH+ GHAFH+YHLTSPD +VSFEFQHNVCGRSIYAEG+VDA +FL
Sbjct: 242 RDPEQQLEMVGVPEEHIEGHAFHLYHLTSPDDSVSFEFQHNVCGRSIYAEGSVDAAMFLH 301
Query: 241 KKVQLKADKRIYNMIDVLREGNMR 264
+KV+ KRIY+MIDVLREG+MR
Sbjct: 302 RKVRSNDSKRIYDMIDVLREGSMR 325
>sp|Q2NHW0|DAPB_METST 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=dapB PE=3 SV=1
Length = 273
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 37/277 (13%)
Query: 1 MGKAVIKAADAA-------GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASV 53
MG +IK A G+E+ P S + GQ++ + +++ G D L +
Sbjct: 13 MGSKIIKTVQAQDNMEVVMGIEM-PNSPLAGNDLGQQIGLGPMGVEIIGSQD----LKTE 67
Query: 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRL---HETIENSNVYAVI 110
+K ++VD+T+ A ++ ++ GV V+GTTG + +L H+ I+++++ AVI
Sbjct: 68 LEKVKPDVLVDFTIAKAAVETVKICAECGVNVVVGTTGLNDEQLDVMHKAIKDNDIKAVI 127
Query: 111 SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLG 169
SP M V F EI+ + + Y ++++E+H K D SGTAK +
Sbjct: 128 SPNMATGVNVFF---EIVGQVAKILGNEYDVEIVEAHHHNKQDAPSGTAKRAAEIVAE-N 183
Query: 170 VSFDMDQIQMIRDPKQQLEMVGV-PEEHLPGHAFHMYHLTSPDQTVSF-------EFQHN 221
++ D+ + + + MVG PE + HA + D TV F E H
Sbjct: 184 LNLDLKE----KACYGREGMVGKRPENEIGIHAVRGGDIVG-DHTVMFCGDGERIEVIHR 238
Query: 222 VCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
R + G + A+ + S K DK I +M DVL
Sbjct: 239 ASTRQAFVNGVIRAINYQSS----KQDKNIADMFDVL 271
>sp|C6BTW9|DAPB_DESAD 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfovibrio
salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /
VKM B-1763) GN=dapB PE=3 SV=1
Length = 260
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 33/235 (14%)
Query: 33 VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92
VCG + Q V K P +VVD+T PAA E+ S G P V+GTTG
Sbjct: 48 VCGTDAQ------------EVLTKVPGAVVVDFTSPAATLKLLEIASVTGNPVVIGTTGM 95
Query: 93 DRVRLHETIE-NSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGK 151
L + E V ++P M V L + + A Y +++ E H K
Sbjct: 96 TNEELAQVEEFAKKVPVFLAPNMSVGVNVLLKVLPELVRMLGDA---YDMEMTEIHHNKK 152
Query: 152 LDT-SGTAKAVISCF-QKLGVSFD------MDQIQMIRDPKQQLEMVGVPEEHLPGHAFH 203
+D+ SGTA + C + G+ +D D I R K +L ++ V + G H
Sbjct: 153 VDSPSGTALKLAQCMAEARGLVYDEVKKHSRDGIIGAR-TKDELGVMAVRGGDVVGD--H 209
Query: 204 MYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
+ P + + E H R +A+G + A +LS+ + ++Y+M DVL
Sbjct: 210 TAYFLGPGERI--EVTHRAHSRETFAQGALRAARWLSE----QKPGKLYDMADVL 258
>sp|Q1MRS7|DAPB_LAWIP 4-hydroxy-tetrahydrodipicolinate reductase OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=dapB PE=3 SV=1
Length = 258
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 47/228 (20%)
Query: 53 VFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG--DRVRLHETI-ENSNVYAV 109
+F +YP +V+D+T P A++ K G P ++GTTG ++ ET+ + S ++
Sbjct: 56 IFSRYPQAVVIDFTTPETSISMAQVAQKYGNPIIIGTTGFTLEQFDTLETLAKTSRIFW- 114
Query: 110 ISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAV------- 161
SP M + L + MA Q G + Y+++++E H K D SGTA +
Sbjct: 115 -SPNMSIGINVLLKTLPQMA-QILG--NEYNIEIVEVHHNKKKDAPSGTAMRIAETLSTS 170
Query: 162 -------ISCFQKLGVSFDMDQ----IQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSP 210
++C+ + G+ + Q IQ IR ++VGV H + P
Sbjct: 171 RHWDLEKVACYNREGIVGERPQEQIGIQTIRGG----DVVGV----------HTIYFIGP 216
Query: 211 DQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
+ + E H R +A+G + A ++ K+ KA R+Y M+D++
Sbjct: 217 GERI--EITHQADSRKNFAQGALKAAEWIIKQ---KAG-RLYTMMDII 258
>sp|Q8THP0|DAPB_METAC 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=dapB PE=3 SV=1
Length = 263
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Query: 25 EESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP 84
+++G+ V IQ+ + D E+VL K +++D+T A NA + + GV
Sbjct: 40 KDAGEFAHVSNLGIQISDVKDLETVL----KKTQADVLIDFTAAGATIVNAPIAAGCGVN 95
Query: 85 FVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSL 141
++GTTG R + ETI+ + V AVISP V F + A+ S Y +
Sbjct: 96 LIIGTTGLTPEQRKVIDETIQKNKVRAVISPNYSVGVNVFFKIVREAAKY----LSDYDI 151
Query: 142 QVLESHQAGKLDT-SGTA-KAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPG 199
+++E+H K D SGTA +A + LG + + I +++ +
Sbjct: 152 EIIEAHHNQKKDAPSGTALRAADVISEALGGKEYVCGREGIAPRGKEIGI---------- 201
Query: 200 HAFHMYHLTSPDQTVSF-------EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIY 252
HA +T D TV F E +H R I+A+G V A ++ K+ + IY
Sbjct: 202 HAVRGGDITG-DHTVLFVGNSERIEIRHMAHSRQIFAKGAVRAAEWICKQ-----EPGIY 255
Query: 253 NMIDVL 258
+M DVL
Sbjct: 256 SMDDVL 261
>sp|A9AB21|DAPB_METM6 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=dapB PE=3
SV=1
Length = 270
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 39/226 (17%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
L V + ++VD+T A A+ SK+GV V+GTTG R + + I + V
Sbjct: 64 LEDVLKESGAEVLVDFTAAAPCVNTAKTASKLGVNLVIGTTGFTPEQRAEMEKAISENKV 123
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF 165
A IS V F +E++A++ Y +++LE H K D SGTA
Sbjct: 124 AATISQNYAVGVNIFFKTLELLAQK----LGDYDIEILEMHHKFKKDAPSGTALRAAEII 179
Query: 166 QKLGVSFDMDQIQMIRDPKQQLEMVGV----PEEHLPGHAFHMYHLTSPDQTVSF----- 216
Q + RD G+ +E + HA + D TV F
Sbjct: 180 QN----------NLNRDSNLIYGREGITGERTKEEICIHALRGGDIVG-DHTVIFTTEGE 228
Query: 217 --EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKR--IYNMIDVL 258
E H V R G + A+ F+ ADK+ IYN DVL
Sbjct: 229 RLELSHRVTSRQSLVSGAIRAIQFV-------ADKKEGIYNTFDVL 267
>sp|Q57865|DAPB_METJA 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=dapB PE=3 SV=2
Length = 274
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 37/214 (17%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
++VD+T+ A N ++ +K GV V+GTTG + + + I+ +NV AVIS
Sbjct: 75 VLVDFTIAHACVENVKIAAKNGVNLVIGTTGFTEEQKAEIEKAIKENNVAAVISQNFAIG 134
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGT---AKAVISCFQKLGVSFD 173
V F +E +A++ Y ++++E H K D SGT A +I + + F
Sbjct: 135 VNIFFKTLEFLAKK----LGDYDIEIIEMHHRYKKDAPSGTALRAAEIIKANRGIESVFV 190
Query: 174 MDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSF-------EFQHNVCGRS 226
+ M + K+ E +G+ HA + D TV F E H R
Sbjct: 191 YGRYGMTGERKK--EEIGI-------HALRGGDVVG-DHTVIFAGDGERIELTHRASSRQ 240
Query: 227 IYAEGTVDAVLFLSKKVQLKADKR--IYNMIDVL 258
+ G + A+ ++ ADK+ IYN DVL
Sbjct: 241 AFVNGVILAIRYI-------ADKKEGIYNTFDVL 267
>sp|Q6LYR5|DAPB_METMP 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain S2 / LL) GN=dapB PE=3 SV=1
Length = 270
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 113/276 (40%), Gaps = 39/276 (14%)
Query: 1 MGKAVIKA-ADAAGLELVP-VSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKY 57
MG +IK + GL++V + + GQ V E+ G LS + L +V +
Sbjct: 13 MGSGIIKTITETDGLDVVAAIDIPNHPKKGQDVGELTGLGKIGVALSTSDE-LEAVLKES 71
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQM 114
++VD+T A A+ SK+GV V+GTTG R + + I + V A IS
Sbjct: 72 GAEVLVDFTAAAPCVQTAKTASKLGVNLVIGTTGFTPEQRAEMEDAISKNKVAATISQNY 131
Query: 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFD 173
V F +E++A++ Y +++LE H K D SGTA Q
Sbjct: 132 AVGVNIFFKTLELLAQK----LGDYDIEILEMHHKFKKDAPSGTALRAAEIIQN------ 181
Query: 174 MDQIQMIRDPKQQLEMVGV----PEEHLPGHAFHMYHLTSPDQTVSF-------EFQHNV 222
+ RD G+ +E + HA + D +V F E H V
Sbjct: 182 ----NLNRDSNVIYGREGITGERTKEEICIHALRGGDIVG-DHSVIFTTEGERLELSHRV 236
Query: 223 CGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
R G V A+ F+++K + IYN DVL
Sbjct: 237 TSRQSLVSGAVLAIKFVAQK-----KEGIYNTFDVL 267
>sp|A6VFL4|DAPB_METM7 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=dapB PE=3
SV=1
Length = 270
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 114/279 (40%), Gaps = 45/279 (16%)
Query: 1 MGKAVIKA-ADAAGLELVP-VSFGTEEESGQKV-EVCG-KEIQVHGLSDRESVLASVFDK 56
MG +IK + GL++V + + GQ + E+ G +I V + E L ++ +
Sbjct: 13 MGSGIIKTITETDGLDVVAAIDIPNHPKKGQDIGELTGLGKIGVSLSTSDE--LEAILKE 70
Query: 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQ 113
++VD+T A A+ +K+GV V+GTTG R + I + V A IS
Sbjct: 71 SGAEVLVDFTAAAPCVNTAKTAAKLGVNLVIGTTGFTPEQRAEMENAISENKVAATISQN 130
Query: 114 MGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSF 172
V F +E++A++ Y +++LE H K D SGTA Q
Sbjct: 131 YAVGVNIFFKTLELLAQK----LGDYDIEILEMHHKFKKDAPSGTALRAAEIIQN----- 181
Query: 173 DMDQIQMIRDPKQQLEMVGV----PEEHLPGHAFHMYHLTSPDQTVSF-------EFQHN 221
+ RD G+ +E + HA + D TV F E H
Sbjct: 182 -----NLNRDSNIIYGREGITGERTKEEICIHALRGGDIVG-DHTVIFTTDGERLELSHR 235
Query: 222 VCGRSIYAEGTVDAVLFLSKKVQLKADKR--IYNMIDVL 258
V R G + A+ F+ ADK+ IYN DVL
Sbjct: 236 VTSRQSLVSGAIRAIQFV-------ADKKEGIYNTFDVL 267
>sp|A4FXV6|DAPB_METM5 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=dapB PE=3
SV=1
Length = 270
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 35/213 (16%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
++VD+T PA A+ +K+GV V+GTTG R + I + V A IS
Sbjct: 75 VLVDFTAPAPCVNTAKTAAKLGVNLVIGTTGFTSEQRAEMENAISENKVAATISQNYAVG 134
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQ 176
V F +E++A++ Y ++++E H K D SGTA Q
Sbjct: 135 VNIFFKTLELLAQK----LGDYDIELIEMHHKFKKDAPSGTALRAAEIIQN--------- 181
Query: 177 IQMIRDPKQQLEMVGV----PEEHLPGHAFHMYHLTSPDQTVSF-------EFQHNVCGR 225
+ RD G+ +E + HA + D T F E H R
Sbjct: 182 -NLNRDSNLIFGRKGITGERTKEEICIHALRGGDVVG-DHTAMFAADGERLELTHKASSR 239
Query: 226 SIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
+ G + AV F+++K + IYN DVL
Sbjct: 240 QSFISGVILAVKFVAEK-----KEGIYNTFDVL 267
>sp|Q3ISP9|DAPB_NATPD 4-hydroxy-tetrahydrodipicolinate reductase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=dapB PE=3
SV=1
Length = 246
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 42/210 (20%)
Query: 55 DKYPNMI-----VVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAV 109
+++P ++ V+D+TVP A + + + GVP+V+GTTG D + S AV
Sbjct: 46 EEFPELLDNADAVIDFTVPEATREHVQAAAAAGVPYVIGTTGFDDDGMAALRTASESTAV 105
Query: 110 I-SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQK 167
+ + + V A L +E E P Y +++ E+H GK D SGTA +
Sbjct: 106 LKASNFARGVQALLRVVEAGVEALP----EYDIELTETHHNGKRDAPSGTANTI------ 155
Query: 168 LGVSFDMDQIQMIRDPKQQLEMV-GVPEEHLPG--------------HAFHMYHLTSPDQ 212
+D + RD + L+ G EH G H L D+
Sbjct: 156 ------LDVVDETRD--EALDRTHGREGEHRRGDDEVGVHVRRAGTVRGEHELLLAGNDE 207
Query: 213 TVSFEFQHNVCGRSIYAEGTVDAVLFLSKK 242
+S H R ++A G VDA +L+ +
Sbjct: 208 VLS--LTHRAESRRVFAAGAVDAAEWLADR 235
>sp|A6UUT2|DAPB_META3 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=dapB PE=3
SV=1
Length = 273
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 34/214 (15%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
++VD+T PA ++ S+ V V+GTTG + E I +N+ AVIS
Sbjct: 76 VLVDFTAPAPCVNTVKIASENNVNLVVGTTGFTNEQMEEMEEIINKNNIGAVISQNYAIG 135
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQ 176
V F +E++A++ Y ++++E H K D SGTA + Q
Sbjct: 136 VNIFFKTLELLAQK----IGDYDIEIVEMHHKFKKDAPSGTALRALEIIQN--------- 182
Query: 177 IQMIRDPKQQLEMVGV----PEEHLPGHAFHMYHLTSPDQTVSF-------EFQHNVCGR 225
+ RD K G+ +E + HA + D TV F E H R
Sbjct: 183 -NLNRDSKAIYGREGLVGERTKEEICIHALRGGDVVG-DHTVIFAGDGERLELTHKASSR 240
Query: 226 SIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLR 259
+ G V AV +++ K D +IYN DVL
Sbjct: 241 QAFVSGVVLAVKYIAD----KKDGKIYNTFDVLN 270
>sp|A6TT16|DAPB_ALKMQ 4-hydroxy-tetrahydrodipicolinate reductase OS=Alkaliphilus
metalliredigens (strain QYMF) GN=dapB PE=3 SV=1
Length = 240
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 35/217 (16%)
Query: 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMG 115
K+ +++D++ P+A+ G + GVP V+GTTG ++ L E I+ + + +
Sbjct: 42 KHTPEVIIDFSHPSALEGVLDYAMAHGVPLVIGTTGFEKEHL-EAIDQAAKHIPV----- 95
Query: 116 KQVVAFLAAMEI---MAEQFPGAFSGYS-LQVLESHQAGKLDT-SGTAKAVISCFQK-LG 169
Q M I + EQ G + ++V+ESH K+D SG+A ++ C +K LG
Sbjct: 96 LQATNMSLGMNILFSLVEQVAGMLKNKADIEVIESHHNRKMDAPSGSAVTIVECIEKGLG 155
Query: 170 VSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHA--------FHMYHLTSPDQTVSFEFQHN 221
+ + + P+++ E +GV HA FH + + +TV + H
Sbjct: 156 EARKHQHGREGQCPREKGE-IGV-------HAIRGGNIVGFHEANFINELETV--KVSHE 205
Query: 222 VCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
RS++A+G ++A F+ + +Y+M DVL
Sbjct: 206 AHDRSVFAQGALEAAKFV-----VNQPTGLYHMKDVL 237
>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp.
(strain PCC 7424) GN=dapB PE=3 SV=1
Length = 275
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 32/274 (11%)
Query: 1 MGKAVIKAADAA-------GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASV 53
MGK VIKA A ++L P G E++G+ V CG ++V L D +SVL
Sbjct: 18 MGKEVIKAVSQAEDMMLVGAVDLNPKYRG--EDAGE-VAGCGP-VEVPILDDLQSVLVLA 73
Query: 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG--GDRVR-LHETIENSNVYAVI 110
+ ++VD+T P V N GV V+GTTG G++++ L E E ++ +I
Sbjct: 74 TQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGEFAEKASTGCLI 133
Query: 111 SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLG 169
P ++ L + A Q+ F ++++E H K D SGTA +LG
Sbjct: 134 VPNFSIGMI-LLQQAAVQASQY---FD--HVEIIELHHNQKADAPSGTAIKTAEMLSELG 187
Query: 170 VSFD---MDQIQMIRDPKQQL--EMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCG 224
SF+ +++ + IR + + E + + LPG H + + + +H+
Sbjct: 188 KSFNPAKVEETETIRGSRGGITEENIHIHSVRLPGFIAHQEVIFGSTGQI-YTLRHDTTD 246
Query: 225 RSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
RS + G +L + K QLK+ IY + +L
Sbjct: 247 RSSFMPGV---LLAIRKVTQLKS--LIYGLEKIL 275
>sp|Q8PXL6|DAPB_METMA 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=dapB PE=3 SV=1
Length = 263
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 36/246 (14%)
Query: 25 EESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP 84
+++G+ V IQ+ + D E+VL K +++D+T A NA + + GV
Sbjct: 40 KDAGEFAHVGNLGIQISDVKDLETVL----KKTQADVLIDFTAAGATIVNAPIAAGCGVN 95
Query: 85 FVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSL 141
++GTTG R + E I + V AVISP V F + A+ + Y +
Sbjct: 96 LIIGTTGITSEQRAVIEEAIRKNQVRAVISPNYSVGVNVFFKIVREAAKY----LADYDI 151
Query: 142 QVLESHQAGKLDT-SGTA-KAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPG 199
+++E+H K D SGTA +A + LG ++ E + + +
Sbjct: 152 EIIEAHHNQKKDAPSGTALRAADVISEALGG----------KEYVYGREGIAPRGKEIGI 201
Query: 200 HAFHMYHLTSPDQTVSF-------EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIY 252
HA +T D TV F E H R I+A+G V A ++ + + IY
Sbjct: 202 HAVRGGDITG-DHTVLFVGNSERVEIHHMAHSRQIFAKGAVRAAEWICGQ-----EPGIY 255
Query: 253 NMIDVL 258
+M DVL
Sbjct: 256 SMDDVL 261
>sp|A2SQU7|DAPB_METLZ 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=dapB
PE=3 SV=1
Length = 251
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
LA+ D+ +++D+TV AA NA++ +K GV V+GTTG L + I+N V
Sbjct: 51 LAAFIDEVKPDVMIDFTVAAATMINAKIAAKKGVALVIGTTGFTPEQDAELLDAIKNVPV 110
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF 165
+ +G + F + A + Y ++V+E+H K D SGTAK ++
Sbjct: 111 VKTTNFSVGVNI--FWELVRDAASR----LGDYDIEVIEAHHRYKKDAPSGTAKTILKVI 164
Query: 166 Q-KLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCG 224
Q ++G +M + + + K ++ + + + G +H + E H
Sbjct: 165 QEEVGKREEMYGREGMTERKNEIGVHVIRGGDVVGDHTVQFHQNYE----TIELTHRAYD 220
Query: 225 RSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
R+++A G + A ++ KA +Y M +VL
Sbjct: 221 RAVFARGAIRAAAWVP-----KAKPGVYTMKEVL 249
>sp|O29353|DAPB_ARCFU 4-hydroxy-tetrahydrodipicolinate reductase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=dapB PE=3 SV=1
Length = 257
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 27/250 (10%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MG+ V+K A A GL++V +F E E+ G + G+ + + K
Sbjct: 12 MGRLVVKNAVAEGLKVVQ-AFDINEVGKDAGELAG--VGKIGVPIEDDI-----SKLDAD 63
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
+++D+T A NAE+ ++ GV VMGTTG DR RL E E V ++SP
Sbjct: 64 VLIDFTTAEAAMKNAEVAAEKGVRVVMGTTGFTDEDRKRLAELAE--KVPMIVSPNFSLG 121
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKL----GVSF 172
V F +E A+ + +++E H K D+ SGTA + +K+ G+
Sbjct: 122 VNIFWKIVEYAAKM----LYEWDAEIVELHHRHKRDSPSGTALKLAEIIRKVKEEKGIEA 177
Query: 173 DMDQIQMIRDPKQ-QLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEG 231
D+ + P++ ++ + G+ + G H + + E H R +A G
Sbjct: 178 DLKTCREGISPRESEIGVFGIRGGDVVGE--HTVFFFGSGERI--ELTHRAMSRECFAIG 233
Query: 232 TVDAVLFLSK 241
V A +++K
Sbjct: 234 AVRAAKWIAK 243
>sp|Q12ZG1|DAPB_METBU 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcoides
burtonii (strain DSM 6242) GN=dapB PE=3 SV=1
Length = 263
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 32/221 (14%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
+A+V + +V+D+T+ A NA + + GV ++GTTG R + I +
Sbjct: 61 MATVLKESKTNVVIDFTIAPATVANAPVVAGAGVDLIIGTTGFSDEQRATIEGAIIKNGT 120
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA-KAVISC 164
AVISP V F ++ A+ S Y ++++E+H K D SGTA KA
Sbjct: 121 SAVISPNYSVGVNVFFKILQETAKY----LSEYDIEIIEAHHNQKKDAPSGTAMKAAEVI 176
Query: 165 FQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSF-------E 217
+ LG +D E + ++ + HA + D TV F E
Sbjct: 177 SETLGG----------KDFVYGREGLAPRDKEIGIHAVRGGDIVG-DHTVLFAGDGERIE 225
Query: 218 FQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
+H R+ +A G V A ++++ A I+ M D+L
Sbjct: 226 IKHQAHSRNAFASGAVKAAIWIN-----NAGPGIHTMDDIL 261
>sp|Q46DC3|DAPB_METBF 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=dapB PE=3 SV=1
Length = 263
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 18/214 (8%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
L +V + +++D+T A NA + ++ GV ++GTTG R + E I+ V
Sbjct: 61 LETVLKESKADVLIDFTAAGATVVNAPIAARAGVNLIIGTTGLTPEQRAVIDEAIQEGQV 120
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA-KAVISC 164
AVISP V F + A+ + Y ++++E+H K D SGTA +A
Sbjct: 121 SAVISPNYSVGVNVFFKIIREAAKY----LADYDIEIIEAHHNQKKDAPSGTALRAADII 176
Query: 165 FQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCG 224
+ +G + + I +++ + GV + G ++ S E +H
Sbjct: 177 SEAVGGREYVYGREGIAPRGKEIGIHGVRAGDITGDHIVLFAGNSE----RIEIKHIAHS 232
Query: 225 RSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
R I+A+G V A ++ ++ IY+M DVL
Sbjct: 233 RQIFAKGAVRAAEWVCRQ-----KPGIYSMDDVL 261
>sp|B8J0P9|DAPB_DESDA 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfovibrio
desulfuricans (strain ATCC 27774 / DSM 6949) GN=dapB
PE=3 SV=1
Length = 259
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
LA+V K P + +D+T P+ +A + G V+GTTG ++ LHE + + +
Sbjct: 54 LAAVLPKAPGAVAIDFTAPSVSLQSARAVAASGHALVIGTTGFTDAEKDELHELAKKAPI 113
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF 165
+ + +G V+ +I+ E Y ++++E H K D+ SGTA + C
Sbjct: 114 FWASNMSIGVNVLC-----KILPELTRALGDAYDIEMVELHHNRKKDSPSGTALTLGECL 168
Query: 166 QKLGVSFDMDQIQM-IRD------PKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEF 218
+ + ++ ++ RD PK Q+ + + + G H + P + + E
Sbjct: 169 AE-ARGWQLNDVRCSARDGIIGERPKAQIGIQAIRGGDVVG--VHTVYFMGPGERI--EV 223
Query: 219 QHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
H R +A+G + A +L V K K +Y M D+
Sbjct: 224 THQAHSRDTFAQGALRAAAWL---VGQKPGK-LYGMRDMF 259
>sp|A6UNQ4|DAPB_METVS 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=dapB
PE=3 SV=1
Length = 270
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 35/224 (15%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVR---LHETIENSNV 106
L SV ++VD+T PA A++ SK GV V+GTTG + + + + I + V
Sbjct: 64 LESVLKSSGAEVLVDFTAPAPCVNTAKIASKCGVNLVIGTTGFTKEQKDEMEKAIFENKV 123
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF 165
A IS V F +E++A++ Y ++++E H K D SGTA
Sbjct: 124 AATISQNYAVGVNIFFKTLELLAQK----LGEYDIEIVEMHHKFKKDAPSGTALRAAEII 179
Query: 166 QKLGVSFDMDQIQMIRDPKQQLEMVGV----PEEHLPGHAFHMYHLTSPDQTVSF----- 216
Q+ + R+ G+ +E + HA + D TV F
Sbjct: 180 QE----------NLNRNSNLIYGREGITGERTKEEICIHALRGGDVVG-DHTVIFANDGE 228
Query: 217 --EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
E H R + G + A+ F+ K + I+N DVL
Sbjct: 229 RLELSHKASSRQSFIAGVILAIKFVGTK-----KEGIFNTFDVL 267
>sp|Q5HWX1|DAPB_CAMJR 4-hydroxy-tetrahydrodipicolinate reductase OS=Campylobacter jejuni
(strain RM1221) GN=dapB PE=3 SV=1
Length = 242
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 115/252 (45%), Gaps = 32/252 (12%)
Query: 21 FGTEEESGQKVEVCGK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77
+G + G+++E C K + Q+ L D+ L +F+K +++D++ P+ +
Sbjct: 7 YGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFEKSD--VIIDFSSPSGTHELLNY 64
Query: 78 YSKVGVPFVMGTTGGDRVRLHETIENSNV---YAVISPQMGKQVVAFLAAMEIMAEQFPG 134
+ P V+GTTG D LH S V + + +G V+ +LA+ A Q
Sbjct: 65 ARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNMSLGVAVLNYLAS---KASQM-- 119
Query: 135 AFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQIQMI-RD------PKQQ 186
+ +++LE H K D SGTA + K + +++++++ RD K +
Sbjct: 120 -LRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAK-ARNLELEKVRVSGRDGIIGERSKDE 177
Query: 187 LEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLK 246
+ ++ + + G HM + + E H R+ +A+G + ++LSK+
Sbjct: 178 IAVMSLRGGDIVGR--HMVGFYEDGEFL--ELNHTATSRATFAKGAIKIAIWLSKQ---- 229
Query: 247 ADKRIYNMIDVL 258
+ ++Y++ D L
Sbjct: 230 -EAKMYSINDFL 240
>sp|A8FJZ8|DAPB_CAMJ8 4-hydroxy-tetrahydrodipicolinate reductase OS=Campylobacter jejuni
subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
GN=dapB PE=3 SV=1
Length = 242
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 114/253 (45%), Gaps = 34/253 (13%)
Query: 21 FGTEEESGQKVEVCGK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77
+G + G+++E C K + Q+ L D+ L +F+K +++D++ P+ +
Sbjct: 7 YGAKGRMGKQIEECLKSETQAQISILYDKGGNLEELFEKSD--VIIDFSSPSGTHELLNY 64
Query: 78 YSKVGVPFVMGTTGGDRVRLHETIENSNV---YAVISPQMGKQVVAFLAAMEIMAEQFPG 134
+ P V+GTTG D LH S V + + +G V+ +LA+ A Q
Sbjct: 65 ARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNMSLGVAVLNYLAS---KASQM-- 119
Query: 135 AFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQIQMI-RD------PKQQ 186
+ +++LE H K D SGTA + K + +++++++ RD K +
Sbjct: 120 -LKNFDIEILEMHHRHKKDAPSGTAMTLAQSVAK-ARNLELEKVRVSGRDGIIGERSKDE 177
Query: 187 LEMVGVPEEHLPG-HAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQL 245
+ ++ + + G H Y + E H R+ +A+G + ++LSK+
Sbjct: 178 IAVMSLRGGDIVGRHTVGFY-----EDGEFLELNHTATSRATFAKGAIKIAIWLSKQ--- 229
Query: 246 KADKRIYNMIDVL 258
+ ++Y++ D L
Sbjct: 230 --EAKMYSINDFL 240
>sp|A9HE99|DAPB_GLUDA 4-hydroxy-tetrahydrodipicolinate reductase OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=dapB PE=3 SV=1
Length = 256
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 87/211 (41%), Gaps = 29/211 (13%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVI-----SPQMG 115
+V+D+T A V +A++ ++ GV +V+GTTG L + V+ SP G
Sbjct: 59 VVIDFTHAATVRTHADILARAGVAWVLGTTGLSAADLEAVRTAAGRIPVVHAANYSP--G 116
Query: 116 KQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDM 174
+V LA MA P A Y ++LE H K+D SGTA A+ Q + +
Sbjct: 117 VTLVTRLARQ--MAAALPSAT--YDAEILEMHHRQKVDAPSGTALAI---GQAVADGRGI 169
Query: 175 DQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFE-------FQHNVCGRSI 227
D I D + G G A + TVSF H R I
Sbjct: 170 DLASHIEDGRTG--HTGPRRADAIGFAVLRGGQIVGEHTVSFTSATEQIALTHRSFDRRI 227
Query: 228 YAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
YA G V A L+L + +Y+M DVL
Sbjct: 228 YATGAVRAALWLRGQA-----SGLYDMEDVL 253
>sp|A5ULF7|DAPB_METS3 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=dapB PE=3
SV=1
Length = 273
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 32/196 (16%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIEN---SNVYAVISPQMGKQ 117
++VD+T+ A + + GV V+GTTG ++ E I+N ++V AVIS M
Sbjct: 75 VLVDFTIAHAAVETVKKATACGVNVVVGTTGFTDEQMAENIKNVKDNDVKAVISSNMSIG 134
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQ 176
V F + ++ + + ++++E+H K D SGTA ++ F+ + D
Sbjct: 135 VNVFFNTL----KKLTPILNDFDIEIIEAHHNQKKDAPSGTA---MTAFEVIANELD--- 184
Query: 177 IQMIRDPKQ-----QLEMVG-VPEEHLPGHAFHMYHLTSPDQTVSF-------EFQHNVC 223
RDP++ + MVG +E + HA + D TV F EF H
Sbjct: 185 ----RDPEEVGVYGRQGMVGKRTKEEIGLHAIRGGDIVG-DHTVMFIGDGERIEFTHRAH 239
Query: 224 GRSIYAEGTVDAVLFL 239
R ++ G + A+ ++
Sbjct: 240 TREVFIAGVIRAIRYI 255
>sp|B1XT71|DAPB_POLNS 4-hydroxy-tetrahydrodipicolinate reductase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=dapB
PE=3 SV=1
Length = 266
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 32/236 (13%)
Query: 34 CGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG-- 91
GK+ V SD VLA+ ++D+T P + + K G ++GTTG
Sbjct: 48 LGKKTGVLISSDVAQVLANA------QFLIDFTRPEGTMAHLAIAEKTGTKMIIGTTGLS 101
Query: 92 GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGK 151
D++ + + ++N+ V +P M V A +EI A+ GY ++++E+H K
Sbjct: 102 ADQIAGLKKV-SANLAIVFAPNMSVGVNATFKLLEIAAKMLS---QGYDIEIIEAHHKHK 157
Query: 152 LDT-SGTAKAVISCF-QKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTS 209
+D SGTA + + LG D D R+ G +E G A
Sbjct: 158 VDAPSGTALKMGEVIAEALGEKLD-DVAVYAREGH-----TGERKEGSIGFAIIRGGDIV 211
Query: 210 PDQTVSF-------EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
D TV F E H R YA+G++ A FL + +++M DVL
Sbjct: 212 GDHTVLFAGDGERIEISHKSSSRQSYAQGSLRAARFLQNQ-----KNGLFDMQDVL 262
>sp|Q2FNQ9|DAPB_METHJ 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=dapB PE=3 SV=1
Length = 254
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 24/206 (11%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
+V+D+TV A N + ++ G ++GTTG R + I V AVIS
Sbjct: 62 VVIDFTVAPAAAQNVPVAARAGCAIILGTTGLTQEQRKGIDAAIREGKVPAVISTN---- 117
Query: 118 VVAFLAAMEIMAEQFPGA---FSGYSLQVLESHQAGKLDT-SGTAKAVISCFQ-KLGVSF 172
+ M I+ A S Y ++V+E+H K D SGTA+ ++ Q ++G
Sbjct: 118 ---YSIGMNILWTLIRDAARKLSDYDVEVIEAHHRYKKDAPSGTARTILQILQEEIGPRE 174
Query: 173 DMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGT 232
++ + + + ++ + + + G H S +TV+ H RS++AEG
Sbjct: 175 EIYGREGMTERSSEIGVHVIRGGDIVGD--HAVMFASNFETVT--LSHRAYDRSVFAEGA 230
Query: 233 VDAVLFLSKKVQLKADKRIYNMIDVL 258
V A ++ K + IY M DVL
Sbjct: 231 VRATRWVFGK-----EPGIYGMKDVL 251
>sp|Q8RQN0|DAPB_COREF 4-hydroxy-tetrahydrodipicolinate reductase OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=dapB PE=3 SV=1
Length = 248
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET----IENSNVYAVISPQMGK 116
+VVD+T P AV GN E G+ V+GTTG D RL + N V +I+P
Sbjct: 50 VVVDFTTPNAVMGNLEFCINNGISAVVGTTGFDEDRLAQVRSWCASNEGVGVLIAPNFAI 109
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SG----TAKAVISCFQKLGVS 171
V + + A Q F S +V+E H KLD SG TA+ + ++ G++
Sbjct: 110 SAVLTM----VFARQAARFFE--SAEVIELHHPNKLDAPSGTAIHTAQGIAEARREAGMA 163
Query: 172 FDMDQIQMIRDPKQQLEMVGVP 193
D + D + ++ G+P
Sbjct: 164 AQPDATEQALDGSRGADVDGIP 185
>sp|A3CVI6|DAPB_METMJ 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=dapB
PE=3 SV=1
Length = 252
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 41/244 (16%)
Query: 33 VCGKEIQVHGLSDRESVLASVFDKYPNM----IVVDYTVPAAVNGNAELYSKVGVPFVMG 88
V G +++ L E V A+ D + N +++D+TV A N + ++ GV ++G
Sbjct: 30 VGGIDVREGTLFKTEVVPAAKIDAFLNEKKPDVLIDFTVAGAAVENIKAAARNGVALIVG 89
Query: 89 TTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLE 145
TTG R + +E NV AVIS V F + A + Y ++V E
Sbjct: 90 TTGFSPEQRETIAAAVE-GNVPAVISSNFSVGVNIFWKLVREAARE----LGDYDVEVTE 144
Query: 146 SHQAGKLDT-SGTAKAVISCF-QKLGVSFDMDQIQMIRDPKQQLEMVGVPE--EHLPGHA 201
+H K D SGTAK ++ Q+LG ++ VG E + + H
Sbjct: 145 AHHRYKKDAPSGTAKTILEILDQELG------------SREKAYGRVGETERKDEIGVHV 192
Query: 202 FHMYHLTSPDQTVSF-------EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNM 254
+ D +V F E H R+++A+G V A ++ + + RIY M
Sbjct: 193 IRGGDIVG-DHSVLFAGNFECIEVSHRAYDRAVFAQGAVRAARWVVGR-----EPRIYGM 246
Query: 255 IDVL 258
DVL
Sbjct: 247 QDVL 250
>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1
Length = 275
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 24/259 (9%)
Query: 1 MGKAVIKA-ADAAGLELVPVSFGTEEESGQKV-EVCG-KEIQVHGLSDRESVLASVFDKY 57
MG+ VIKA A A L+LV GQ + EV G ++V L+D +SVL +
Sbjct: 18 MGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIAPLEVPVLADLQSVLVLATQEK 77
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET---IENSNVYAVISPQM 114
++VD+T P+ V N GV V+GTTG ++ + E ++ +I+P
Sbjct: 78 IQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGDFAEKASTGCLIAPNF 137
Query: 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFD 173
V+ + + A Q+ F ++++E H K D SGTA ++G +F+
Sbjct: 138 AIGVL-LMQQAAVQACQY---FD--HVEIIELHHNQKADAPSGTAIKTAQMLAEMGKTFN 191
Query: 174 ---MDQIQMIRDPKQQLEMVGVP--EEHLPGHAFHMYHL-TSPDQTVSFEFQHNVCGRSI 227
+++ + I K L +P LPG H L SP Q + +H+ R+
Sbjct: 192 PPAVEEKETIAGAKGGLGPGQIPIHSIRLPGLIAHQEVLFGSPGQL--YTIRHDTTDRAC 249
Query: 228 YAEGTVDAVLFLSKKVQLK 246
Y G +L + K V+LK
Sbjct: 250 YMPGV---LLGIRKVVELK 265
>sp|B1XIL4|DAPB_SYNP2 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=dapB PE=3 SV=1
Length = 275
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 42/279 (15%)
Query: 1 MGKAVIKA-ADAAGLELV------PVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASV 53
MG+ V+KA A AA +E++ P G +++G+ + CG ++V ++D E+ L
Sbjct: 18 MGREVVKAVAGAADMEIIAAVDKNPALLG--QDAGE-IAGCGA-VEVPIVNDLEASLVMA 73
Query: 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVR---LHETIENSNVYAVI 110
++VD+T P+ V N GV V+GTTG + L E E ++ A+I
Sbjct: 74 TQSKIQGVMVDFTHPSGVYANTRAAIAYGVRPVVGTTGLSEEQINDLKEFAEKASTGALI 133
Query: 111 SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLG 169
P VV A A+ F ++++E H K D SGTA +LG
Sbjct: 134 IPNFSIGVVLLQQASLQAAKYFD------HVEIIELHHNQKADAPSGTAIKTAQMLAELG 187
Query: 170 VSFDMDQIQMIRDPKQQLEMVG----VPEEHLPGHAFHMYHLTSPDQTV------SFEFQ 219
F+ +++ ++ EM G V E+++ H+ + L + + + + +
Sbjct: 188 KQFNPAEVE------EKEEMPGAKGAVTEDNIRIHSVRLPGLIAHQEMIFGAPGQIYTLR 241
Query: 220 HNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
H+ RS Y G + LS + + + +Y + ++L
Sbjct: 242 HDTSDRSCYMPG-----VLLSIRKVTELNTLVYGLENIL 275
>sp|P40110|DAPB_CORGL 4-hydroxy-tetrahydrodipicolinate reductase OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=dapB PE=3 SV=2
Length = 248
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE----NSNVYAVISPQMGK 116
+VVD+T P AV GN E G+ V+GTTG D RL + + NV +I+P
Sbjct: 50 VVVDFTTPNAVMGNLEFCINNGISAVVGTTGFDDARLEQVRDWLEGKDNVGVLIAPNFAI 109
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SG----TAKAVISCFQKLGVS 171
V + + A F A +V+E H KLD SG TA+ + + ++ G+
Sbjct: 110 SAVLTMVFSKQAARFFESA------EVIELHHPNKLDAPSGTAIHTAQGIAAARKEAGMD 163
Query: 172 FDMDQIQMIRDPKQQLE-MVGVPEEHLPGHAFHMYHLTSPDQTV 214
D + Q LE G + +P HA M + + +Q +
Sbjct: 164 AQPDATE------QALEGSRGASVDGIPVHAVRMSGMVAHEQVI 201
>sp|A1VXS5|DAPB_CAMJJ 4-hydroxy-tetrahydrodipicolinate reductase OS=Campylobacter jejuni
subsp. jejuni serotype O:23/36 (strain 81-176) GN=dapB
PE=3 SV=1
Length = 242
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 114/253 (45%), Gaps = 34/253 (13%)
Query: 21 FGTEEESGQKVEVCGK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77
+G + G+++E C K + ++ L D+ L +F+K +++D++ P+ +
Sbjct: 7 YGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFEKSD--VIIDFSSPSGTHELLNY 64
Query: 78 YSKVGVPFVMGTTGGDRVRLHETIENSNV---YAVISPQMGKQVVAFLAAMEIMAEQFPG 134
+ P V+GTTG D LH S V + + +G V+ +LA+ A Q
Sbjct: 65 ARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNMSLGVAVLNYLAS---KASQM-- 119
Query: 135 AFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQIQMI-RD------PKQQ 186
+ +++LE H K D SGTA + K + +++++++ RD K +
Sbjct: 120 -LRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAK-ARNLELEKVRVSGRDGIIGERSKDE 177
Query: 187 LEMVGVPEEHLPG-HAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQL 245
+ ++ + + G H Y + E H R+ +A+G + ++LSK+
Sbjct: 178 IAVMSLRGGDIVGRHTVGFY-----EDGEFLELNHTATSRATFAKGAIKIAIWLSKQ--- 229
Query: 246 KADKRIYNMIDVL 258
+ ++Y++ D L
Sbjct: 230 --EAKMYSINDFL 240
>sp|Q9PIT2|DAPB_CAMJE 4-hydroxy-tetrahydrodipicolinate reductase OS=Campylobacter jejuni
subsp. jejuni serotype O:2 (strain NCTC 11168) GN=dapB
PE=3 SV=1
Length = 242
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 114/253 (45%), Gaps = 34/253 (13%)
Query: 21 FGTEEESGQKVEVCGK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77
+G + G+++E C K + ++ L D+ L +F+K +++D++ P+ +
Sbjct: 7 YGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFEKSD--VIIDFSSPSGTHELLNY 64
Query: 78 YSKVGVPFVMGTTGGDRVRLHETIENSNV---YAVISPQMGKQVVAFLAAMEIMAEQFPG 134
+ P V+GTTG D LH S V + + +G V+ +LA+ A Q
Sbjct: 65 ARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNMSLGVAVLNYLAS---KASQM-- 119
Query: 135 AFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQIQMI-RD------PKQQ 186
+ +++LE H K D SGTA + K + +++++++ RD K +
Sbjct: 120 -LRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAK-ARNLELEKVRVSGRDGIIGERSKDE 177
Query: 187 LEMVGVPEEHLPG-HAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQL 245
+ ++ + + G H Y + E H R+ +A+G + ++LSK+
Sbjct: 178 IAVMSLRGGDIVGRHTVGFY-----EDGEFLELNHTATSRATFAKGAIKIAIWLSKQ--- 229
Query: 246 KADKRIYNMIDVL 258
+ ++Y++ D L
Sbjct: 230 --EAKMYSINDFL 240
>sp|Q1LJ29|DAPB_RALME 4-hydroxy-tetrahydrodipicolinate reductase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=dapB PE=3 SV=1
Length = 265
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 28/233 (12%)
Query: 35 GKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR 94
G+E + SD E+VL++ ++D+T P + + ++G V+GTTG D
Sbjct: 49 GRETGIKISSDIEAVLSAAD------CLIDFTRPEGTLAHLAVAKRLGKKMVIGTTGFDA 102
Query: 95 VRLHETIENS-NVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLD 153
+ + ++ V + M V A +E+ A+ +GY ++++E+H K+D
Sbjct: 103 AGKQALADAAKSIGVVFAANMSVGVNATFKLLEVAAKLLS---TGYDIEIIEAHHRHKVD 159
Query: 154 T-SGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQ 212
SGTA A+ K + D+D+ + G + G A D
Sbjct: 160 APSGTALAMGEVVAK-AIGRDLDECAVYAREGH----TGPRDAKSIGFATVRGGDIVGDH 214
Query: 213 TVSF-------EFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
TV F E H R YA+G V A FL+ K +++M DVL
Sbjct: 215 TVMFAGIGERIEISHKSSSRQSYADGAVRAARFLADK-----PSGMFDMQDVL 262
>sp|Q88W01|DAPB_LACPL 4-hydroxy-tetrahydrodipicolinate reductase OS=Lactobacillus
plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
GN=dapB PE=3 SV=1
Length = 261
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 28/145 (19%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG--GDRV-RLHETIENSNVYAVISPQMGKQ 117
+ +D+T+P AV NA+ G+ V+GTTG ++V L + ++ V +I+P G
Sbjct: 68 VWIDFTIPTAVYENAKFALNHGISPVIGTTGMTDEQVAELQKLAKDKQVGGLIAPNFGIS 127
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQ 176
V + + A+ FP ++++E H K+D+ SGTA IS +K
Sbjct: 128 AVLLMQFAQQAAKYFP------DVEIIEMHHDDKIDSPSGTA---ISTAKK--------- 169
Query: 177 IQMIRDPKQQLEMVGVPE--EHLPG 199
I +R PK+Q G P+ E LPG
Sbjct: 170 IAEVRQPKEQ----GNPDATETLPG 190
>sp|Q5V5D5|DAPB_HALMA 4-hydroxy-tetrahydrodipicolinate reductase OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=dapB PE=3 SV=1
Length = 249
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 51 ASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR---VRLHETIENSNVY 107
A+ +Y +VVD+ VP AE + GVP V+GTTG D RL + E +
Sbjct: 50 AAALREYDVDVVVDFAVPKGALTVAEACVEAGVPMVVGTTGFDEDGLARLQDASEEIPLL 109
Query: 108 AVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQ 166
+ G QV+ L + + G Y L+++E+H K+D SGTA +++ Q
Sbjct: 110 KATNFSQGIQVLQRLISEAV------GTLDDYDLELMETHHNRKVDAPSGTASSILDVIQ 163
Query: 167 KLGVSFDMDQI--QMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCG 224
+ D++ + + P++ E+ H L D+ +S H
Sbjct: 164 E---ERDVEPVYGREGHAPREDDEIGVFARRAGDVRGEHELVLAGNDEVLS--LSHRAED 218
Query: 225 RSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
R ++A G +DA +L + D Y DV+
Sbjct: 219 RGVFAAGALDAATWLVGR-----DSGWYEFGDVV 247
>sp|Q3SJS2|DAPB_THIDA 4-hydroxy-tetrahydrodipicolinate reductase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=dapB PE=3 SV=1
Length = 267
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 22/207 (10%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQMGKQVV 119
++VD+T P A G E + GVP V+GTTG D R V V +P M V
Sbjct: 71 VLVDFTRPEATFGYLEACALDGVPVVIGTTGFDEAGRARIAAAAERVPVVFAPNMSVGVN 130
Query: 120 AFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLG-------VS 171
+ E+ AE GY ++++E+H K+D SGTA + +
Sbjct: 131 LLMKLAEVAAEVLQ---DGYDIEIIEAHHRHKVDAPSGTALGLGQAVARASGRDLEACAV 187
Query: 172 FDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEG 231
+ + + RDP+ + V + G H + V E H R+ +A+G
Sbjct: 188 YGREGVTGERDPR-TIGFATVRGGDIVGD--HTLLFAGVGERV--ELTHKASSRATFAQG 242
Query: 232 TVDAVLFLSKKVQLKADKRIYNMIDVL 258
+ A +K VQ +A +Y+M DVL
Sbjct: 243 ALRA----AKWVQGRAPG-LYDMRDVL 264
>sp|Q8TVG7|DAPB_METKA 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=dapB PE=3 SV=1
Length = 275
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 21/213 (9%)
Query: 57 YPNM-----IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD----RVRLHETIENSNVY 107
PN+ + +D+TV A NA ++ G+ V+GTTG RV HE IE + V
Sbjct: 64 LPNIAKDADVAIDFTVREATLENAPKAARAGLDLVIGTTGFSDEDLRVLEHE-IEEAGVS 122
Query: 108 AVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF- 165
AVISP M V +A +G+ +++E H K+D SGTA + +
Sbjct: 123 AVISPNMSLGVNLLFELTRQLARVL--GDNGFDFEIVEIHHRHKVDAPSGTALELAAIIE 180
Query: 166 QKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGR 225
++LG + + P+ E +GV G + + + + E H R
Sbjct: 181 EELGKGEKVFGREGNVGPRDDDE-IGVLAVR-GGEVVGDHTVMALGEYERIELTHRALSR 238
Query: 226 SIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
+A+G + A F+ ++A IY+M DVL
Sbjct: 239 DAFAKGALVAAKFV-----VEAPPGIYSMRDVL 266
>sp|O26891|DAPB_METTH 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=dapB PE=3 SV=1
Length = 273
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 48 SVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRL---HETIENS 104
S LA + ++VD+TV +A + ++ GV V+GTTG + + IE S
Sbjct: 62 SNLADTLAETEPDVLVDFTVASAAVETIKTSTEAGVNLVVGTTGFSEEEMQTVRDCIERS 121
Query: 105 NVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V AVI+P M V F + +A S Y ++++E+H K D SGTA
Sbjct: 122 GVRAVIAPNMAVGVNVFFKVLRDLAP----ILSDYDVEIIEAHHRHKKDAPSGTA 172
>sp|Q8DHH2|DAPB_THEEB 4-hydroxy-tetrahydrodipicolinate reductase OS=Thermosynechococcus
elongatus (strain BP-1) GN=dapB PE=3 SV=1
Length = 276
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 121/271 (44%), Gaps = 28/271 (10%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTE---EESGQKVEVCGKEIQVHGLSDRESVLASVFDKY 57
MG+ V+KA A + + + E+ G+ + + EI + G S +E +A+ +K
Sbjct: 21 MGREVVKAVHQAPDTALYAAVDRKQVGEDIGEALGLGTLEIPISG-SLQEVCVAAAQEKQ 79
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE---NSNVYAVISPQM 114
P +++VD+T P AV N + GV V+GTTG ++ E E +++ AVI+P
Sbjct: 80 P-VVMVDFTHPQAVYENVRMAIAYGVYPVVGTTGLSPEQIEELAEFADKADMGAVIAPNF 138
Query: 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFD 173
+V L I A Q+ F ++++E H K D SGTA +LG +F+
Sbjct: 139 SIGMV-LLQEAAIRASQY---FD--HVEIIELHHNQKADAPSGTALQTAQRLAELGKTFN 192
Query: 174 MDQIQ-----MIRDPKQQLEMVGVPEEHLPGHAFHMYHL-TSPDQTVSFEFQHNVCGRSI 227
Q+Q + + LPG H + +P Q + +H+ R
Sbjct: 193 PPQVQESEHLRGARGAFAAAEIRIHSVRLPGLIAHQEVIFGAPGQI--YTLRHDTSDRQC 250
Query: 228 YAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
Y G +L + K QLK + IY + +L
Sbjct: 251 YMPGV---LLAIRKVRQLK--RLIYGLEKLL 276
>sp|A4QEY0|DAPB_CORGB 4-hydroxy-tetrahydrodipicolinate reductase OS=Corynebacterium
glutamicum (strain R) GN=dapB PE=3 SV=1
Length = 248
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET---IEN-SNVYAVISPQMGK 116
+VVD+T P AV GN E G+ V+GTTG D RL + +E NV +I+P
Sbjct: 50 VVVDFTTPNAVMGNLEFCINNGISAVVGTTGFDDARLEQVRAWLEGKDNVGVLIAPNFAI 109
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SG----TAKAVISCFQKLGVS 171
V + + A F S +V+E H KLD SG TA+ + + ++ G+
Sbjct: 110 SAVLTMVFSKQAARFFE------SAEVIELHHPNKLDAPSGTAIHTAQGIAAARKEAGMD 163
Query: 172 FDMDQIQMIRDPKQQLE-MVGVPEEHLPGHAFHMYHLTSPDQTV 214
D + Q LE G + +P HA M + + +Q +
Sbjct: 164 AQPDATE------QALEGSRGASVDGIPVHAVRMSGMVAHEQVI 201
>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium
erythraeum (strain IMS101) GN=dapB PE=3 SV=1
Length = 275
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 26/271 (9%)
Query: 1 MGKAVIKA-ADAAGLELVPVSFGTEEESGQKV-EVCGK-EIQVHGLSDRESVLASVFDKY 57
MG+ VIK A+A+ + L+ E GQ + E+ G ++V L+D + +L +
Sbjct: 18 MGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIGSGPLEVPILNDLQGILVMAAQEK 77
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVR---LHETIENSNVYAVISPQM 114
++VD+T P +V N GV V+GTTG + + L E E +++ +I P
Sbjct: 78 QPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAEFAEKASIGTLIIPNF 137
Query: 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSF- 172
+V A ++ F ++++E H K D SGTA +LG ++
Sbjct: 138 SIGMVLLQQAAIAASKHFD------HVEIIELHHNQKADAPSGTAIKTAQMLSELGKTYN 191
Query: 173 --DMDQIQMIRDPKQQL--EMVGVPEEHLPGHAFHMYHL-TSPDQTVSFEFQHNVCGRSI 227
++++ + I + L E + + LPG H + P Q + +H+ RS
Sbjct: 192 VPNVEETEKIEGARGCLAEEGIRIHSVRLPGLIAHQEVIFGGPGQI--YTLRHDTTDRSC 249
Query: 228 YAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
Y G VL +KVQ K IY + +L
Sbjct: 250 YMPG----VLLAIRKVQ-SLTKLIYGLEKIL 275
>sp|A7I854|DAPB_METB6 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanoregula boonei
(strain 6A8) GN=dapB PE=3 SV=1
Length = 255
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 120/265 (45%), Gaps = 38/265 (14%)
Query: 1 MGKAVIKAAD---AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY 57
+G+ V ++ D A G++L P SF G ++ V KEI E++LAS K
Sbjct: 17 LGRMVAESQDLELAGGIDLHPGSF-----FGAEI-VAAKEI--------EALLAS---KK 59
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG--GDRVRLHETIENSNVYAVISPQMG 115
P+ +++D+TV A N + ++ V ++GTTG ++ + T N +V AVIS
Sbjct: 60 PD-VLIDFTVAHAAVENVKSAARNNVALIVGTTGFTPEQREVMATAINGHVPAVISSNYS 118
Query: 116 KQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF-QKLGVSFD 173
V F + + Y ++V+E+H K D SGTAK ++ ++ G
Sbjct: 119 VGVNIFWQ----LVREAGRLLKDYDIEVIEAHHRNKKDAPSGTAKTILQILDEEAGERRK 174
Query: 174 MDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTV 233
+ + + + + ++ + + + G H + +T+ E H RS++A G +
Sbjct: 175 LYGREGMMERQNEIGVHVIRGGDIVGD--HTVMFSKNFETI--ELSHRAYDRSVFASGAL 230
Query: 234 DAVLFLSKKVQLKADKRIYNMIDVL 258
A ++ K IY M DVL
Sbjct: 231 RAARWVVGK-----KPGIYGMNDVL 250
>sp|Q8XVT2|DAPB_RALSO 4-hydroxy-tetrahydrodipicolinate reductase OS=Ralstonia
solanacearum (strain GMI1000) GN=dapB PE=3 SV=1
Length = 263
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE-NSNVYAVISPQMGKQVV 119
+++D+T P A + E+ ++GV V+GTTG + + + + V +P M V
Sbjct: 69 VLIDFTRPEATLAHLEIARELGVGVVIGTTGFTAEQKASFKDYGATIGVVWAPNMSVGVN 128
Query: 120 AFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQIQ 178
A +E+ A+ GY ++++E+H K+D SGTA + + + ++
Sbjct: 129 ATFKLIEVAAKILA---QGYDVEIVEAHHKHKIDAPSGTALKMGEIVAEAQGTTLAERAV 185
Query: 179 MIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSF-------EFQHNVCGRSIYAEG 231
R+ + M G G A D TV F E H R YAEG
Sbjct: 186 YAREGETGPRMNGT-----IGFATVRGGDIVGDHTVLFVGEGERIEITHRSNSRQSYAEG 240
Query: 232 TVDAVLFLSKKVQLKADKRIYNMIDVL 258
V A FL+ K K +++M DVL
Sbjct: 241 AVRAACFLAGK------KGLFDMNDVL 261
>sp|Q30ZK7|DAPB_DESDG 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfovibrio
desulfuricans (strain G20) GN=dapB PE=3 SV=1
Length = 259
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 33/225 (14%)
Query: 49 VLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSN 105
L + P+ +V+D+T P A NA ++ G V+GTTG + L + +
Sbjct: 53 TLEELLPGMPDAVVIDFTAPEASVHNARACARHGSGLVIGTTGFTEEQKAELADCALQTP 112
Query: 106 VYAVISPQMGKQVVAFLAAM----EIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKA 160
V+ +P M V L + ++ EQ Y L+++E H K D+ SGTA
Sbjct: 113 VF--WAPNMSVGVNVLLKILPQLVTLLGEQ-------YDLEMVELHHNKKKDSPSGTALR 163
Query: 161 VISCFQKLGVSFDMDQIQ-------MIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213
+ C + +D+D + + P +++ + + + G H + P +
Sbjct: 164 LAECLAE-ARKWDLDTVANYHREGIIGERPHEEIGIQTIRGGDVVG--VHTVYALGPGER 220
Query: 214 VSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258
+ E H R +A G + A +L++ ++Y M D+L
Sbjct: 221 I--EVTHQAHSRETFAAGAIRAAKWLAQ----NRPGKLYTMSDML 259
>sp|A0LZI4|DAPB_GRAFK 4-hydroxy-tetrahydrodipicolinate reductase OS=Gramella forsetii
(strain KT0803) GN=dapB PE=3 SV=1
Length = 239
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 27/227 (11%)
Query: 37 EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG--DR 94
+I+ H L+D E +A +D++VP A N K +P V GTTG D
Sbjct: 33 DIENHDLNDFEIDVA-----------IDFSVPKAAFKNITTCFKHAIPVVSGTTGWLDDY 81
Query: 95 VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT 154
+ E + + + + V F + +A G YS+ + E H KLD+
Sbjct: 82 AKAREICKKEDSAFIYASNFSLGVNVFFELNQKLAGMMQG-LEDYSVDIEEIHHLQKLDS 140
Query: 155 -SGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213
SGT A+ Q L + + Q+ + ++ + EE++PG + +T
Sbjct: 141 PSGT--AITLAQQILEQNSKLKGWQLDEADEDEIPIHAKREENVPG----THTVTYESSI 194
Query: 214 VSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLRE 260
E H R +A G V A +L K I+ M DVL +
Sbjct: 195 DKIEITHTAKSRQGFALGAVVAAEYLKDKTG------IFTMKDVLSD 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,018,800
Number of Sequences: 539616
Number of extensions: 3803087
Number of successful extensions: 9932
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 365
Number of HSP's that attempted gapping in prelim test: 9737
Number of HSP's gapped (non-prelim): 479
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)