Query 024671
Match_columns 264
No_of_seqs 180 out of 1300
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02130 dapB_plant dihydrodi 100.0 1.3E-74 2.8E-79 523.7 27.2 262 1-264 12-275 (275)
2 PLN02775 Probable dihydrodipic 100.0 1.5E-71 3.3E-76 505.8 28.7 262 1-264 23-286 (286)
3 COG0289 DapB Dihydrodipicolina 100.0 9.1E-71 2E-75 492.4 23.4 238 1-260 14-266 (266)
4 TIGR00036 dapB dihydrodipicoli 100.0 5.6E-61 1.2E-65 435.4 25.9 237 1-259 13-266 (266)
5 PRK00048 dihydrodipicolinate r 100.0 1.2E-58 2.6E-63 418.0 25.6 234 1-259 13-256 (257)
6 PF05173 DapB_C: Dihydrodipico 100.0 3E-41 6.5E-46 277.1 11.7 130 117-258 1-132 (132)
7 PF01113 DapB_N: Dihydrodipico 99.9 1.8E-24 3.8E-29 175.4 8.9 106 1-114 12-124 (124)
8 PRK08374 homoserine dehydrogen 98.2 3.5E-06 7.6E-11 79.3 6.5 68 56-124 90-160 (336)
9 PRK13303 L-aspartate dehydroge 98.1 3.5E-05 7.7E-10 70.1 11.6 108 1-118 12-125 (265)
10 PF03447 NAD_binding_3: Homose 97.2 0.00039 8.5E-09 55.0 4.3 102 1-109 5-115 (117)
11 PRK04207 glyceraldehyde-3-phos 97.0 0.0017 3.7E-08 61.3 7.0 82 1-90 12-110 (341)
12 PRK13304 L-aspartate dehydroge 96.9 0.01 2.2E-07 53.9 10.4 108 1-118 12-126 (265)
13 PRK06270 homoserine dehydrogen 96.4 0.023 5.1E-07 53.5 9.9 120 1-124 13-163 (341)
14 PRK13301 putative L-aspartate 96.1 0.051 1.1E-06 49.9 9.8 106 1-118 13-126 (267)
15 PRK13302 putative L-aspartate 95.9 0.068 1.5E-06 48.8 10.2 109 1-119 17-130 (271)
16 PF13380 CoA_binding_2: CoA bi 94.7 0.49 1.1E-05 37.7 10.1 98 2-118 16-113 (116)
17 COG1712 Predicted dinucleotide 94.5 0.26 5.7E-06 44.4 9.0 107 1-118 11-124 (255)
18 TIGR01921 DAP-DH diaminopimela 94.2 0.38 8.2E-06 45.4 9.8 141 1-157 14-164 (324)
19 TIGR01019 sucCoAalpha succinyl 94.1 0.48 1E-05 43.9 10.2 99 2-113 19-121 (286)
20 PLN00125 Succinyl-CoA ligase [ 93.1 0.87 1.9E-05 42.5 10.0 103 3-118 26-132 (300)
21 TIGR03855 NAD_NadX aspartate d 93.0 0.86 1.9E-05 40.8 9.5 99 13-120 1-104 (229)
22 COG3804 Uncharacterized conser 92.9 0.31 6.8E-06 45.2 6.6 78 2-87 14-96 (350)
23 PRK05678 succinyl-CoA syntheta 92.5 1.3 2.8E-05 41.2 10.3 99 2-113 21-123 (291)
24 PF01408 GFO_IDH_MocA: Oxidore 92.4 0.36 7.9E-06 37.5 5.7 99 2-108 12-116 (120)
25 PRK06349 homoserine dehydrogen 91.8 0.98 2.1E-05 43.9 9.0 109 1-118 14-136 (426)
26 COG1748 LYS9 Saccharopine dehy 91.0 1.8 3.9E-05 41.9 9.7 123 2-133 13-142 (389)
27 PTZ00187 succinyl-CoA syntheta 90.6 3.8 8.2E-05 38.6 11.3 101 3-113 43-147 (317)
28 PF03435 Saccharop_dh: Sacchar 90.6 0.52 1.1E-05 44.6 5.7 112 1-119 9-129 (386)
29 PRK08300 acetaldehyde dehydrog 89.9 1.7 3.6E-05 40.7 8.3 112 2-116 16-134 (302)
30 TIGR00715 precor6x_red precorr 89.9 3.2 6.9E-05 37.8 10.0 83 2-88 12-98 (256)
31 PF02629 CoA_binding: CoA bind 89.5 2.9 6.4E-05 31.8 8.2 77 2-88 15-92 (96)
32 PF00107 ADH_zinc_N: Zinc-bind 88.9 0.41 8.8E-06 37.6 3.0 87 1-91 2-92 (130)
33 TIGR03215 ac_ald_DH_ac acetald 86.9 6.9 0.00015 36.3 10.2 109 1-115 12-127 (285)
34 PRK08057 cobalt-precorrin-6x r 86.8 6.5 0.00014 35.6 9.8 78 2-87 14-97 (248)
35 PLN02819 lysine-ketoglutarate 86.7 8.1 0.00018 42.0 11.9 114 1-120 580-711 (1042)
36 TIGR03450 mycothiol_INO1 inosi 86.4 6.4 0.00014 37.5 9.7 78 48-127 114-198 (351)
37 PRK11579 putative oxidoreducta 85.5 9.3 0.0002 35.6 10.5 110 5-124 20-136 (346)
38 PF13407 Peripla_BP_4: Peripla 85.3 3.7 8.1E-05 35.6 7.4 42 50-91 48-89 (257)
39 PF01118 Semialdhyde_dh: Semia 84.9 5.8 0.00013 31.3 7.7 83 1-92 11-100 (121)
40 COG0074 SucD Succinyl-CoA synt 84.7 5.7 0.00012 36.9 8.4 101 1-113 20-123 (293)
41 PF02593 dTMP_synthase: Thymid 84.3 12 0.00026 33.4 10.1 113 45-167 41-167 (217)
42 PRK06392 homoserine dehydrogen 84.2 5.1 0.00011 37.8 8.1 66 56-122 80-152 (326)
43 PF02571 CbiJ: Precorrin-6x re 82.1 9.5 0.00021 34.5 8.8 32 55-87 64-98 (249)
44 TIGR02717 AcCoA-syn-alpha acet 82.1 13 0.00029 36.3 10.4 37 57-94 64-101 (447)
45 PRK05472 redox-sensing transcr 82.0 7.3 0.00016 34.0 7.8 107 1-122 95-203 (213)
46 PF13460 NAD_binding_10: NADH( 81.7 3 6.4E-05 34.5 5.0 21 1-21 10-30 (183)
47 PRK08955 glyceraldehyde-3-phos 81.2 6.9 0.00015 37.1 7.8 84 1-89 13-119 (334)
48 cd06305 PBP1_methylthioribose_ 81.2 28 0.00061 30.1 11.3 40 50-89 48-87 (273)
49 PF00072 Response_reg: Respons 81.1 8 0.00017 28.7 6.8 71 44-115 30-103 (112)
50 COG2099 CobK Precorrin-6x redu 80.9 12 0.00026 34.2 8.9 32 55-87 64-98 (257)
51 cd02069 methionine_synthase_B1 80.1 25 0.00054 31.0 10.5 75 49-123 131-211 (213)
52 COG4091 Predicted homoserine d 79.5 6.3 0.00014 38.0 6.8 83 1-87 28-131 (438)
53 PRK14046 malate--CoA ligase su 78.5 20 0.00044 34.6 10.2 80 47-126 299-386 (392)
54 TIGR01532 E4PD_g-proteo D-eryt 78.5 10 0.00022 35.8 7.9 89 1-92 10-123 (325)
55 PRK14618 NAD(P)H-dependent gly 78.4 8.5 0.00018 35.6 7.4 108 1-117 15-140 (328)
56 PTZ00142 6-phosphogluconate de 77.6 8.7 0.00019 38.0 7.5 91 1-95 12-107 (470)
57 TIGR01546 GAPDH-II_archae glyc 77.4 9.3 0.0002 36.2 7.3 79 1-87 9-104 (333)
58 PLN02522 ATP citrate (pro-S)-l 77.1 13 0.00029 38.1 8.8 74 35-113 60-137 (608)
59 COG1832 Predicted CoA-binding 77.1 17 0.00036 30.3 7.8 49 57-106 73-121 (140)
60 smart00846 Gp_dh_N Glyceraldeh 76.9 13 0.00029 30.8 7.5 22 1-22 11-33 (149)
61 cd06301 PBP1_rhizopine_binding 73.7 48 0.001 28.6 10.6 39 50-88 49-87 (272)
62 PRK06813 homoserine dehydrogen 73.6 6.9 0.00015 37.3 5.4 67 57-124 86-160 (346)
63 TIGR00978 asd_EA aspartate-sem 71.9 18 0.00039 34.0 7.8 80 1-89 12-104 (341)
64 PRK13535 erythrose 4-phosphate 71.9 17 0.00037 34.5 7.6 89 1-92 12-125 (336)
65 PRK06091 membrane protein FdrA 71.1 13 0.00028 37.6 6.9 67 45-114 107-175 (555)
66 cd06347 PBP1_ABC_ligand_bindin 70.4 58 0.0013 29.1 10.6 53 44-97 178-231 (334)
67 TIGR01761 thiaz-red thiazoliny 70.3 27 0.00059 33.2 8.6 114 1-125 13-134 (343)
68 PRK14619 NAD(P)H-dependent gly 70.0 23 0.00049 32.6 7.9 70 1-95 15-88 (308)
69 PF10087 DUF2325: Uncharacteri 69.3 11 0.00024 28.6 4.9 37 57-93 48-87 (97)
70 cd00951 KDGDH 5-dehydro-4-deox 68.6 21 0.00046 32.7 7.4 23 69-91 21-45 (289)
71 cd06282 PBP1_GntR_like_2 Ligan 68.4 75 0.0016 27.1 10.8 38 50-88 48-85 (266)
72 PF02421 FeoB_N: Ferrous iron 68.1 21 0.00046 30.0 6.7 71 53-123 74-154 (156)
73 PLN02688 pyrroline-5-carboxyla 67.7 34 0.00074 30.4 8.4 101 1-114 11-119 (266)
74 COG0673 MviM Predicted dehydro 67.7 37 0.0008 30.9 8.8 108 3-117 17-130 (342)
75 PF13727 CoA_binding_3: CoA-bi 67.6 19 0.00041 29.2 6.2 77 2-85 89-171 (175)
76 cd06312 PBP1_ABC_sugar_binding 67.5 65 0.0014 28.0 10.1 40 50-89 50-89 (271)
77 COG2201 CheB Chemotaxis respon 66.8 25 0.00055 33.6 7.6 47 49-96 39-87 (350)
78 TIGR01296 asd_B aspartate-semi 66.7 1.2E+02 0.0025 28.7 12.3 75 2-86 12-89 (339)
79 TIGR01692 HIBADH 3-hydroxyisob 66.7 70 0.0015 29.0 10.4 87 1-99 7-99 (288)
80 cd06350 PBP1_GPCR_family_C_lik 66.7 30 0.00065 31.4 8.0 51 44-95 204-256 (348)
81 PRK05428 HPr kinase/phosphoryl 66.2 30 0.00065 32.5 7.9 93 68-163 68-168 (308)
82 cd06300 PBP1_ABC_sugar_binding 66.2 79 0.0017 27.3 10.3 39 50-88 53-91 (272)
83 cd06267 PBP1_LacI_sugar_bindin 66.0 80 0.0017 26.6 10.3 39 51-91 49-87 (264)
84 cd06292 PBP1_LacI_like_10 Liga 65.8 88 0.0019 27.0 11.5 40 49-88 47-89 (273)
85 PRK03620 5-dehydro-4-deoxygluc 65.3 25 0.00054 32.4 7.2 9 82-90 76-84 (303)
86 cd00423 Pterin_binding Pterin 65.2 33 0.00071 30.9 7.8 50 60-113 78-128 (258)
87 TIGR03249 KdgD 5-dehydro-4-deo 64.9 30 0.00066 31.7 7.7 10 81-90 73-82 (296)
88 PRK14106 murD UDP-N-acetylmura 64.3 80 0.0017 30.3 10.8 111 2-121 17-148 (450)
89 COG2344 AT-rich DNA-binding pr 63.9 30 0.00065 30.6 6.9 82 1-90 95-178 (211)
90 COG0057 GapA Glyceraldehyde-3- 63.9 29 0.00063 33.0 7.3 90 1-93 12-126 (335)
91 PRK08664 aspartate-semialdehyd 63.3 31 0.00068 32.5 7.6 83 1-92 15-110 (349)
92 PF01297 TroA: Periplasmic sol 62.7 34 0.00073 30.4 7.4 48 67-114 184-231 (256)
93 COG1023 Gnd Predicted 6-phosph 62.5 38 0.00083 31.2 7.5 90 1-91 11-122 (300)
94 PRK03369 murD UDP-N-acetylmura 62.1 95 0.0021 30.6 11.0 50 86-148 119-173 (488)
95 PRK07531 bifunctional 3-hydrox 61.9 30 0.00065 34.3 7.5 104 1-113 15-140 (495)
96 TIGR00679 hpr-ser Hpr(Ser) kin 61.6 41 0.00088 31.6 7.8 64 68-133 68-132 (304)
97 cd06355 PBP1_FmdD_like Peripla 61.4 51 0.0011 30.4 8.5 55 44-100 175-233 (348)
98 KOG1673 Ras GTPases [General f 61.3 49 0.0011 28.6 7.5 69 62-133 99-187 (205)
99 PRK00436 argC N-acetyl-gamma-g 61.3 42 0.00091 31.6 8.0 82 1-92 14-102 (343)
100 cd06348 PBP1_ABC_ligand_bindin 61.2 89 0.0019 28.4 10.1 54 43-97 178-232 (344)
101 COG0329 DapA Dihydrodipicolina 61.2 26 0.00057 32.5 6.5 92 63-167 22-128 (299)
102 PRK04165 acetyl-CoA decarbonyl 60.4 50 0.0011 32.7 8.6 49 61-110 158-206 (450)
103 PRK07535 methyltetrahydrofolat 60.3 33 0.00071 31.2 6.9 52 60-113 71-124 (261)
104 PF00044 Gp_dh_N: Glyceraldehy 60.1 23 0.00049 29.7 5.4 23 1-23 11-34 (151)
105 cd06346 PBP1_ABC_ligand_bindin 60.1 62 0.0013 29.1 8.7 52 44-96 179-231 (312)
106 cd06358 PBP1_NHase Type I peri 59.9 96 0.0021 28.1 10.1 56 44-100 174-231 (333)
107 cd00952 CHBPH_aldolase Trans-o 59.7 27 0.00059 32.3 6.4 17 80-96 75-91 (309)
108 cd01076 NAD_bind_1_Glu_DH NAD( 59.7 86 0.0019 27.8 9.3 109 1-117 42-162 (227)
109 PRK08223 hypothetical protein; 59.7 22 0.00047 33.1 5.7 33 57-90 117-152 (287)
110 PF13458 Peripla_BP_6: Peripla 59.6 1.3E+02 0.0028 26.9 10.8 58 44-102 177-237 (343)
111 PF07075 DUF1343: Protein of u 59.6 22 0.00048 34.2 5.8 147 2-159 14-192 (365)
112 TIGR01361 DAHP_synth_Bsub phos 59.3 63 0.0014 29.4 8.5 80 67-151 144-235 (260)
113 TIGR02082 metH 5-methyltetrahy 58.9 1.1E+02 0.0024 34.0 11.7 79 48-126 774-858 (1178)
114 TIGR03787 marine_sort_RR prote 58.9 76 0.0016 26.5 8.6 68 47-116 34-107 (227)
115 PRK09287 6-phosphogluconate de 58.8 54 0.0012 32.4 8.6 22 1-23 1-22 (459)
116 cd06308 PBP1_sensor_kinase_lik 58.7 1.1E+02 0.0023 26.5 9.8 40 50-89 49-88 (270)
117 PLN02358 glyceraldehyde-3-phos 58.6 55 0.0012 31.1 8.3 86 1-89 16-126 (338)
118 COG2197 CitB Response regulato 58.3 1.2E+02 0.0027 26.2 11.4 56 47-102 36-94 (211)
119 PF02603 Hpr_kinase_N: HPr Ser 58.3 12 0.00027 30.1 3.4 49 68-116 67-116 (127)
120 PF00809 Pterin_bind: Pterin b 57.7 22 0.00048 31.0 5.2 51 60-114 74-125 (210)
121 cd01019 ZnuA Zinc binding prot 57.5 60 0.0013 29.6 8.2 40 68-107 214-253 (286)
122 KOG1198 Zinc-binding oxidoredu 57.4 14 0.00031 35.0 4.2 34 57-92 202-235 (347)
123 PRK15404 leucine ABC transport 57.1 1.2E+02 0.0025 28.4 10.3 56 43-99 202-258 (369)
124 cd06269 PBP1_glutamate_recepto 56.9 23 0.0005 30.5 5.1 49 45-94 183-234 (298)
125 PLN03194 putative disease resi 56.7 61 0.0013 28.3 7.6 73 56-129 25-107 (187)
126 cd06313 PBP1_ABC_sugar_binding 56.0 1.3E+02 0.0028 26.3 9.9 39 50-88 48-86 (272)
127 PRK09197 fructose-bisphosphate 55.8 45 0.00097 32.0 7.1 48 44-91 7-54 (350)
128 PF00532 Peripla_BP_1: Peripla 55.6 1.1E+02 0.0024 27.4 9.6 44 46-91 45-88 (279)
129 TIGR03570 NeuD_NnaD sugar O-ac 55.6 75 0.0016 26.2 8.0 77 1-85 10-86 (201)
130 KOG1255 Succinyl-CoA synthetas 55.5 76 0.0017 29.2 8.2 94 8-113 57-154 (329)
131 cd01539 PBP1_GGBP Periplasmic 55.5 56 0.0012 29.3 7.6 38 50-87 50-87 (303)
132 PF14226 DIOX_N: non-haem diox 55.4 14 0.00031 28.4 3.2 33 62-95 3-40 (116)
133 cd06342 PBP1_ABC_LIVBP_like Ty 55.3 1.5E+02 0.0032 26.5 10.4 55 44-99 177-232 (334)
134 cd01879 FeoB Ferrous iron tran 55.1 64 0.0014 25.3 7.1 71 57-127 74-154 (158)
135 PRK06182 short chain dehydroge 55.0 63 0.0014 28.4 7.8 69 1-93 15-85 (273)
136 PRK15425 gapA glyceraldehyde-3 54.9 56 0.0012 31.0 7.6 87 1-90 13-121 (331)
137 COG2910 Putative NADH-flavin r 54.7 51 0.0011 29.2 6.7 20 2-21 13-32 (211)
138 PRK12938 acetyacetyl-CoA reduc 54.3 69 0.0015 27.4 7.8 74 1-93 15-92 (246)
139 PRK07729 glyceraldehyde-3-phos 54.3 56 0.0012 31.1 7.6 88 1-92 13-122 (343)
140 TIGR00873 gnd 6-phosphoglucona 54.3 61 0.0013 32.1 8.1 21 1-22 10-30 (467)
141 cd06364 PBP1_CaSR Ligand-bindi 54.2 45 0.00099 33.0 7.3 50 44-94 231-282 (510)
142 PRK12738 kbaY tagatose-bisphos 54.1 58 0.0013 30.2 7.5 29 61-89 21-49 (286)
143 PRK12595 bifunctional 3-deoxy- 54.0 1.2E+02 0.0026 29.0 9.9 84 65-154 235-330 (360)
144 cd08281 liver_ADH_like1 Zinc-d 53.8 41 0.00089 31.3 6.6 33 57-90 259-292 (371)
145 TIGR02355 moeB molybdopterin s 53.6 26 0.00057 31.3 5.0 33 57-90 114-147 (240)
146 PF03446 NAD_binding_2: NAD bi 53.4 39 0.00085 27.9 5.8 66 1-77 12-77 (163)
147 cd06319 PBP1_ABC_sugar_binding 53.4 63 0.0014 27.9 7.4 35 54-88 52-86 (277)
148 COG0800 Eda 2-keto-3-deoxy-6-p 53.2 1E+02 0.0022 27.5 8.5 59 56-116 37-96 (211)
149 PRK06139 short chain dehydroge 52.9 73 0.0016 29.6 8.1 72 1-92 19-94 (330)
150 PRK05458 guanosine 5'-monophos 52.7 47 0.001 31.4 6.8 63 44-109 97-165 (326)
151 PLN02700 homoserine dehydrogen 52.5 1.1E+02 0.0023 29.7 9.2 66 57-124 109-177 (377)
152 PLN02725 GDP-4-keto-6-deoxyman 52.4 55 0.0012 29.0 7.0 73 1-90 9-101 (306)
153 TIGR02825 B4_12hDH leukotriene 52.2 30 0.00065 31.3 5.3 88 1-90 151-239 (325)
154 COG1063 Tdh Threonine dehydrog 52.2 51 0.0011 30.9 7.0 36 57-93 238-274 (350)
155 CHL00194 ycf39 Ycf39; Provisio 52.2 60 0.0013 29.6 7.3 81 1-87 12-106 (317)
156 PLN02417 dihydrodipicolinate s 52.1 49 0.0011 30.1 6.7 31 69-99 22-58 (280)
157 PTZ00431 pyrroline carboxylate 52.0 1.4E+02 0.003 26.7 9.5 56 57-113 57-114 (260)
158 cd01537 PBP1_Repressors_Sugar_ 51.7 1.4E+02 0.0031 24.9 10.1 39 50-89 48-86 (264)
159 TIGR01520 FruBisAldo_II_A fruc 51.3 51 0.0011 31.6 6.8 50 43-92 12-61 (357)
160 PRK06476 pyrroline-5-carboxyla 51.2 70 0.0015 28.4 7.4 104 1-113 11-117 (258)
161 PF05368 NmrA: NmrA-like famil 51.2 70 0.0015 27.5 7.3 21 1-21 10-30 (233)
162 PF00899 ThiF: ThiF family; I 51.2 22 0.00049 28.3 3.8 32 57-89 92-124 (135)
163 PRK09599 6-phosphogluconate de 51.1 1.4E+02 0.003 27.2 9.6 22 1-23 11-32 (301)
164 cd00408 DHDPS-like Dihydrodipi 51.0 60 0.0013 29.2 7.0 13 82-94 66-78 (281)
165 PRK09195 gatY tagatose-bisphos 50.9 70 0.0015 29.6 7.5 30 61-90 21-50 (284)
166 cd06323 PBP1_ribose_binding Pe 50.8 1.5E+02 0.0033 25.2 9.4 40 49-88 47-86 (268)
167 PRK03170 dihydrodipicolinate s 50.6 64 0.0014 29.4 7.2 13 82-94 70-82 (292)
168 cd06324 PBP1_ABC_sugar_binding 50.6 1.7E+02 0.0037 26.1 10.0 38 50-88 49-88 (305)
169 PRK11880 pyrroline-5-carboxyla 50.4 93 0.002 27.6 8.1 90 1-101 13-106 (267)
170 cd06309 PBP1_YtfQ_like Peripla 49.5 68 0.0015 27.8 7.0 41 50-90 48-88 (273)
171 cd06318 PBP1_ABC_sugar_binding 49.5 68 0.0015 27.9 7.0 38 50-87 48-85 (282)
172 COG0569 TrkA K+ transport syst 49.3 1.9E+02 0.004 25.5 10.9 119 1-124 11-132 (225)
173 PRK14620 NAD(P)H-dependent gly 49.3 1.5E+02 0.0033 27.1 9.6 88 1-94 11-111 (326)
174 PRK06806 fructose-bisphosphate 49.3 78 0.0017 29.2 7.5 30 61-90 21-50 (281)
175 PRK06079 enoyl-(acyl carrier p 49.0 92 0.002 27.2 7.8 72 1-93 21-94 (252)
176 PRK13397 3-deoxy-7-phosphohept 48.6 87 0.0019 28.6 7.6 83 65-152 132-226 (250)
177 cd06321 PBP1_ABC_sugar_binding 48.5 1.8E+02 0.0038 25.1 10.8 41 50-90 50-90 (271)
178 PLN02778 3,5-epimerase/4-reduc 48.4 1.2E+02 0.0025 27.6 8.6 18 1-18 21-38 (298)
179 TIGR03451 mycoS_dep_FDH mycoth 48.2 77 0.0017 29.3 7.5 34 57-91 245-279 (358)
180 cd06334 PBP1_ABC_ligand_bindin 48.1 2.3E+02 0.005 26.2 11.6 48 44-92 182-230 (351)
181 cd06363 PBP1_Taste_receptor Li 47.8 80 0.0017 29.9 7.7 50 44-94 221-272 (410)
182 cd00953 KDG_aldolase KDG (2-ke 47.5 31 0.00067 31.4 4.6 23 69-91 20-44 (279)
183 PRK06928 pyrroline-5-carboxyla 47.2 1.5E+02 0.0032 26.8 9.0 92 1-101 12-110 (277)
184 COG0784 CheY FOG: CheY-like re 47.1 1.2E+02 0.0026 22.7 7.4 69 48-117 41-114 (130)
185 PRK10840 transcriptional regul 47.0 1.3E+02 0.0027 25.4 8.1 72 44-116 36-113 (216)
186 TIGR02313 HpaI-NOT-DapA 2,4-di 47.0 82 0.0018 28.9 7.4 23 69-91 21-45 (294)
187 PRK10206 putative oxidoreducta 47.0 88 0.0019 29.3 7.7 104 12-124 26-136 (344)
188 cd06375 PBP1_mGluR_groupII Lig 46.9 1.2E+02 0.0025 29.6 8.8 48 45-93 219-268 (458)
189 KOG1014 17 beta-hydroxysteroid 46.7 34 0.00074 32.2 4.7 74 1-94 61-138 (312)
190 PRK05690 molybdopterin biosynt 46.7 33 0.00071 30.8 4.5 33 57-90 122-155 (245)
191 cd01483 E1_enzyme_family Super 46.4 47 0.001 26.6 5.1 33 57-90 89-122 (143)
192 COG0240 GpsA Glycerol-3-phosph 46.4 2.4E+02 0.0053 26.8 10.4 109 1-118 12-141 (329)
193 PRK09496 trkA potassium transp 46.3 1.7E+02 0.0037 27.9 9.7 120 1-123 11-135 (453)
194 PRK10816 DNA-binding transcrip 46.0 1.5E+02 0.0033 24.5 8.4 73 44-117 31-106 (223)
195 cd00762 NAD_bind_malic_enz NAD 45.8 20 0.00044 32.7 3.0 31 80-110 104-138 (254)
196 cd00947 TBP_aldolase_IIB Tagat 45.7 88 0.0019 28.9 7.3 85 44-132 24-119 (276)
197 TIGR00129 fdhD_narQ formate de 45.6 1E+02 0.0022 27.7 7.5 57 62-118 146-207 (237)
198 cd08295 double_bond_reductase_ 45.5 57 0.0012 29.7 6.1 89 1-91 164-254 (338)
199 PRK05865 hypothetical protein; 45.4 1.8E+02 0.0039 31.3 10.4 99 1-108 12-120 (854)
200 TIGR01182 eda Entner-Doudoroff 45.3 1.1E+02 0.0024 26.9 7.5 63 54-118 30-93 (204)
201 PRK02261 methylaspartate mutas 45.2 1.7E+02 0.0036 23.9 10.9 68 50-117 47-124 (137)
202 PRK08328 hypothetical protein; 45.0 44 0.00096 29.6 5.1 33 57-90 118-151 (231)
203 cd06338 PBP1_ABC_ligand_bindin 44.7 2.4E+02 0.0051 25.4 10.5 51 44-95 183-235 (345)
204 cd06310 PBP1_ABC_sugar_binding 44.7 1.3E+02 0.0028 26.0 8.0 39 50-88 50-88 (273)
205 PLN03096 glyceraldehyde-3-phos 44.5 1.2E+02 0.0026 29.6 8.2 87 1-90 71-182 (395)
206 TIGR00706 SppA_dom signal pept 44.5 1E+02 0.0022 26.6 7.2 102 44-154 16-128 (207)
207 PRK09436 thrA bifunctional asp 44.5 59 0.0013 34.5 6.6 66 58-124 548-619 (819)
208 cd01301 rDP_like renal dipepti 44.4 66 0.0014 30.0 6.3 61 48-114 158-231 (309)
209 COG1064 AdhP Zn-dependent alco 44.3 71 0.0015 30.4 6.6 82 1-91 178-262 (339)
210 cd06360 PBP1_alkylbenzenes_lik 44.2 71 0.0015 28.7 6.5 52 43-95 175-229 (336)
211 cd00757 ThiF_MoeB_HesA_family 44.2 53 0.0011 28.8 5.4 20 2-21 33-52 (228)
212 cd00739 DHPS DHPS subgroup of 44.1 1E+02 0.0023 27.8 7.5 50 60-113 78-128 (257)
213 PRK07680 late competence prote 44.0 2.4E+02 0.0051 25.2 9.8 92 1-101 11-108 (273)
214 PRK14874 aspartate-semialdehyd 43.9 2.7E+02 0.0059 25.9 13.3 102 2-116 14-131 (334)
215 PRK12745 3-ketoacyl-(acyl-carr 43.8 81 0.0018 27.1 6.5 73 1-92 14-90 (256)
216 PRK12939 short chain dehydroge 43.8 1.4E+02 0.0031 25.3 8.1 73 1-93 19-95 (250)
217 PTZ00023 glyceraldehyde-3-phos 43.7 80 0.0017 30.0 6.8 87 1-90 13-122 (337)
218 cd01018 ZntC Metal binding pro 43.5 1.4E+02 0.003 26.8 8.1 47 68-114 203-249 (266)
219 PRK11559 garR tartronate semia 43.5 1.6E+02 0.0034 26.5 8.6 22 1-23 13-34 (296)
220 COG2229 Predicted GTPase [Gene 43.3 81 0.0018 27.6 6.2 49 60-108 96-155 (187)
221 cd02071 MM_CoA_mut_B12_BD meth 43.0 1.6E+02 0.0035 23.1 11.6 67 50-118 43-115 (122)
222 cd01391 Periplasmic_Binding_Pr 42.8 1.4E+02 0.0031 24.5 7.7 41 50-91 51-91 (269)
223 cd06341 PBP1_ABC_ligand_bindin 42.7 1.2E+02 0.0026 27.4 7.7 56 44-100 175-232 (341)
224 PRK07114 keto-hydroxyglutarate 42.7 47 0.001 29.7 4.8 54 67-123 97-151 (222)
225 TIGR00674 dapA dihydrodipicoli 42.7 97 0.0021 28.1 7.1 14 82-95 67-80 (285)
226 cd00950 DHDPS Dihydrodipicolin 42.6 98 0.0021 27.9 7.1 23 69-91 21-45 (284)
227 cd01536 PBP1_ABC_sugar_binding 42.5 2.1E+02 0.0045 24.1 10.9 41 50-90 48-88 (267)
228 cd04509 PBP1_ABC_transporter_G 42.4 1.1E+02 0.0025 26.0 7.3 49 45-94 179-230 (299)
229 TIGR01496 DHPS dihydropteroate 42.3 94 0.002 28.1 6.8 49 60-112 77-125 (257)
230 PRK09701 D-allose transporter 42.3 2.4E+02 0.0052 25.4 9.6 42 49-90 74-115 (311)
231 PF01729 QRPTase_C: Quinolinat 42.2 69 0.0015 27.3 5.6 48 56-103 99-147 (169)
232 cd08293 PTGR2 Prostaglandin re 42.2 85 0.0018 28.4 6.7 87 1-90 167-256 (345)
233 PRK00094 gpsA NAD(P)H-dependen 42.1 97 0.0021 28.1 7.0 85 1-94 12-110 (325)
234 PRK10701 DNA-binding transcrip 42.1 2E+02 0.0044 24.2 8.7 71 45-116 33-105 (240)
235 PRK07998 gatY putative fructos 42.1 1.1E+02 0.0024 28.4 7.3 33 111-149 105-138 (283)
236 cd06352 PBP1_NPR_GC_like Ligan 42.0 1.5E+02 0.0032 27.4 8.4 48 44-93 182-233 (389)
237 PF13561 adh_short_C2: Enoyl-( 42.0 31 0.00066 29.9 3.5 73 1-93 8-84 (241)
238 PF07085 DRTGG: DRTGG domain; 41.9 58 0.0013 24.8 4.7 68 44-117 29-97 (105)
239 PRK07877 hypothetical protein; 41.9 41 0.00088 35.3 4.9 33 57-90 196-229 (722)
240 PF12738 PTCB-BRCT: twin BRCT 41.9 4.7 0.0001 28.0 -1.4 32 85-116 1-33 (63)
241 PRK10643 DNA-binding transcrip 41.6 1.8E+02 0.0039 23.8 8.2 48 45-93 32-82 (222)
242 PLN02350 phosphogluconate dehy 41.4 1.3E+02 0.0029 30.0 8.3 22 1-23 17-38 (493)
243 PRK12743 oxidoreductase; Provi 41.3 1.6E+02 0.0036 25.4 8.2 73 1-92 14-90 (256)
244 PRK12857 fructose-1,6-bisphosp 41.2 1.3E+02 0.0028 27.9 7.6 29 62-90 22-50 (284)
245 PRK05557 fabG 3-ketoacyl-(acyl 41.2 1.9E+02 0.0042 24.3 8.4 33 61-93 60-94 (248)
246 TIGR02461 osmo_MPG_phos mannos 41.1 69 0.0015 28.1 5.7 33 70-103 19-51 (225)
247 cd06322 PBP1_ABC_sugar_binding 41.0 1.5E+02 0.0032 25.5 7.7 39 50-88 48-86 (267)
248 TIGR01858 tag_bisphos_ald clas 40.9 1.2E+02 0.0027 28.0 7.5 28 62-89 20-47 (282)
249 TIGR03278 methan_mark_10 putat 40.9 73 0.0016 31.0 6.2 46 66-111 86-135 (404)
250 PRK05867 short chain dehydroge 40.8 1.4E+02 0.0029 25.8 7.5 72 1-92 21-96 (253)
251 PRK10360 DNA-binding transcrip 40.7 1.6E+02 0.0035 23.7 7.6 72 44-117 34-106 (196)
252 PRK12935 acetoacetyl-CoA reduc 40.6 1.4E+02 0.003 25.5 7.5 74 1-93 18-95 (247)
253 PF01210 NAD_Gly3P_dh_N: NAD-d 40.5 56 0.0012 26.8 4.8 110 1-118 10-139 (157)
254 PRK08040 putative semialdehyde 40.4 1.5E+02 0.0032 28.1 8.1 102 2-116 17-134 (336)
255 PRK07062 short chain dehydroge 40.4 1.8E+02 0.0039 25.2 8.2 73 1-93 20-98 (265)
256 COG1066 Sms Predicted ATP-depe 40.3 77 0.0017 31.3 6.2 53 35-87 146-215 (456)
257 PRK10653 D-ribose transporter 40.2 1.3E+02 0.0027 26.7 7.4 38 50-87 75-112 (295)
258 TIGR01214 rmlD dTDP-4-dehydror 40.2 1.2E+02 0.0027 26.6 7.2 69 1-87 11-97 (287)
259 cd08294 leukotriene_B4_DH_like 40.0 99 0.0021 27.6 6.7 32 57-89 211-242 (329)
260 PRK12829 short chain dehydroge 40.0 1.6E+02 0.0035 25.3 7.8 34 60-93 62-97 (264)
261 cd00381 IMPDH IMPDH: The catal 39.9 97 0.0021 29.0 6.8 50 52-102 101-154 (325)
262 TIGR03026 NDP-sugDHase nucleot 39.8 1.7E+02 0.0037 28.0 8.6 21 1-22 11-31 (411)
263 cd06371 PBP1_sensory_GC_DEF_li 39.8 1.4E+02 0.0029 28.1 7.8 48 44-92 174-231 (382)
264 cd01487 E1_ThiF_like E1_ThiF_l 39.7 66 0.0014 27.2 5.2 15 1-15 10-24 (174)
265 PRK10309 galactitol-1-phosphat 39.7 1.1E+02 0.0025 27.8 7.2 34 58-91 229-263 (347)
266 PRK06901 aspartate-semialdehyd 39.7 2.3E+02 0.005 26.9 9.1 107 2-117 15-133 (322)
267 PRK15447 putative protease; Pr 39.6 1.4E+02 0.003 27.6 7.7 71 45-116 16-99 (301)
268 PRK09468 ompR osmolarity respo 39.5 2.2E+02 0.0048 23.9 8.5 73 44-117 36-111 (239)
269 TIGR00683 nanA N-acetylneurami 39.5 1E+02 0.0022 28.2 6.7 14 82-95 70-83 (290)
270 PRK06953 short chain dehydroge 39.3 1.3E+02 0.0028 25.5 7.0 69 1-93 13-81 (222)
271 PRK06801 hypothetical protein; 39.3 1.6E+02 0.0035 27.3 8.0 28 62-89 22-49 (286)
272 PRK08185 hypothetical protein; 39.2 1.5E+02 0.0031 27.5 7.7 10 111-120 99-108 (283)
273 COG0027 PurT Formate-dependent 39.0 2.4E+02 0.0051 27.1 8.9 23 94-116 138-160 (394)
274 cd07021 Clp_protease_NfeD_like 38.9 1.3E+02 0.0027 25.7 6.8 71 47-118 19-93 (178)
275 cd08291 ETR_like_1 2-enoyl thi 38.9 75 0.0016 28.7 5.7 34 57-91 212-245 (324)
276 TIGR03569 NeuB_NnaB N-acetylne 38.8 2.1E+02 0.0046 27.1 8.8 73 66-151 143-227 (329)
277 PRK07878 molybdopterin biosynt 38.7 62 0.0013 31.1 5.4 32 57-89 132-164 (392)
278 PRK09490 metH B12-dependent me 38.7 3.2E+02 0.007 30.7 11.3 77 49-125 794-876 (1229)
279 TIGR02356 adenyl_thiF thiazole 38.5 68 0.0015 27.7 5.2 14 1-14 32-45 (202)
280 PRK00696 sucC succinyl-CoA syn 38.5 2.4E+02 0.0052 26.8 9.3 47 72-118 330-378 (388)
281 PRK08267 short chain dehydroge 38.4 1.8E+02 0.0038 25.2 7.9 73 1-93 13-88 (260)
282 COG0604 Qor NADPH:quinone redu 38.4 1.1E+02 0.0024 28.4 6.9 17 2-18 156-172 (326)
283 TIGR01302 IMP_dehydrog inosine 38.2 1E+02 0.0022 30.2 6.9 57 45-103 225-285 (450)
284 PRK09545 znuA high-affinity zi 38.0 1.6E+02 0.0034 27.3 7.8 12 105-116 252-264 (311)
285 PRK12737 gatY tagatose-bisphos 38.0 1.6E+02 0.0035 27.2 7.8 20 111-132 105-124 (284)
286 PRK05671 aspartate-semialdehyd 38.0 3.5E+02 0.0077 25.5 10.7 103 2-117 17-134 (336)
287 PRK10355 xylF D-xylose transpo 37.9 1.5E+02 0.0033 27.2 7.7 40 48-87 72-111 (330)
288 cd01485 E1-1_like Ubiquitin ac 37.9 62 0.0013 27.9 4.8 33 57-90 113-146 (198)
289 COG1879 RbsB ABC-type sugar tr 37.9 1.7E+02 0.0037 26.4 7.9 40 55-94 89-128 (322)
290 cd01017 AdcA Metal binding pro 37.9 94 0.002 28.1 6.2 40 77-116 184-232 (282)
291 cd08278 benzyl_alcohol_DH Benz 37.8 1.1E+02 0.0024 28.3 6.9 33 57-90 254-287 (365)
292 PRK05993 short chain dehydroge 37.7 1.4E+02 0.0031 26.3 7.3 68 1-92 16-86 (277)
293 cd06362 PBP1_mGluR Ligand bind 37.7 1.3E+02 0.0029 28.6 7.5 49 45-94 217-269 (452)
294 PRK05693 short chain dehydroge 37.6 1.7E+02 0.0036 25.7 7.7 68 1-92 13-82 (274)
295 cd06268 PBP1_ABC_transporter_L 37.6 1.3E+02 0.0028 25.7 6.8 50 45-95 178-228 (298)
296 PRK05565 fabG 3-ketoacyl-(acyl 37.5 1.7E+02 0.0037 24.7 7.6 74 1-93 17-94 (247)
297 KOG0780 Signal recognition par 37.5 1.1E+02 0.0024 30.2 6.7 77 71-154 118-199 (483)
298 PLN03176 flavanone-3-hydroxyla 37.4 50 0.0011 26.4 3.8 37 62-99 40-84 (120)
299 PRK07478 short chain dehydroge 37.4 1.9E+02 0.0041 24.9 7.9 72 1-92 18-93 (254)
300 PF00701 DHDPS: Dihydrodipicol 37.3 45 0.00097 30.3 4.0 31 69-99 22-58 (289)
301 COG1810 Uncharacterized protei 37.3 1.3E+02 0.0027 27.1 6.6 100 56-167 54-170 (224)
302 PRK07666 fabG 3-ketoacyl-(acyl 37.3 1.6E+02 0.0034 25.0 7.3 33 61-93 61-95 (239)
303 PRK08340 glucose-1-dehydrogena 37.2 1.8E+02 0.0039 25.2 7.7 72 1-92 12-86 (259)
304 PRK15411 rcsA colanic acid cap 37.2 87 0.0019 27.0 5.6 80 45-128 35-120 (207)
305 PRK07315 fructose-bisphosphate 37.1 1.6E+02 0.0035 27.3 7.7 28 62-89 22-49 (293)
306 PRK11320 prpB 2-methylisocitra 37.0 3.5E+02 0.0075 25.2 11.0 58 55-118 177-240 (292)
307 cd06314 PBP1_tmGBP Periplasmic 37.0 1.5E+02 0.0033 25.6 7.3 38 50-88 48-85 (271)
308 cd06349 PBP1_ABC_ligand_bindin 36.9 3.2E+02 0.0069 24.6 10.1 53 43-96 176-229 (340)
309 TIGR01505 tartro_sem_red 2-hyd 36.7 1.9E+02 0.0041 26.0 8.0 22 1-23 10-31 (291)
310 TIGR00872 gnd_rel 6-phosphoglu 36.7 1.8E+02 0.0038 26.6 7.9 22 1-23 11-32 (298)
311 PRK04147 N-acetylneuraminate l 36.7 1.1E+02 0.0025 27.8 6.6 23 69-91 24-49 (293)
312 PLN02827 Alcohol dehydrogenase 36.6 1E+02 0.0023 28.9 6.5 34 57-91 263-298 (378)
313 TIGR03649 ergot_EASG ergot alk 36.6 3E+02 0.0064 24.2 10.5 110 1-113 11-136 (285)
314 PRK09466 metL bifunctional asp 36.6 89 0.0019 33.2 6.5 63 60-122 543-611 (810)
315 PRK04452 acetyl-CoA decarbonyl 36.4 1.7E+02 0.0036 27.7 7.7 12 118-129 186-197 (319)
316 cd06327 PBP1_SBP_like_1 Peripl 36.4 1.1E+02 0.0025 27.6 6.5 56 44-101 177-235 (334)
317 PF13466 STAS_2: STAS domain 36.3 1.3E+02 0.0027 21.3 5.6 48 45-95 14-69 (80)
318 PRK06463 fabG 3-ketoacyl-(acyl 36.3 1.9E+02 0.0041 24.9 7.8 34 59-92 54-89 (255)
319 PF06074 DUF935: Protein of un 36.3 64 0.0014 32.2 5.2 47 70-116 222-275 (516)
320 TIGR01457 HAD-SF-IIA-hyp2 HAD- 36.0 93 0.002 27.6 5.7 49 70-118 21-75 (249)
321 TIGR00381 cdhD CO dehydrogenas 35.9 2E+02 0.0043 28.0 8.2 61 56-116 152-227 (389)
322 PRK09581 pleD response regulat 35.9 2.1E+02 0.0046 26.6 8.5 58 44-101 33-95 (457)
323 PF07287 DUF1446: Protein of u 35.9 64 0.0014 31.0 4.9 37 69-105 58-98 (362)
324 TIGR02154 PhoB phosphate regul 35.8 2.4E+02 0.0053 23.0 8.3 72 45-117 34-110 (226)
325 PRK10161 transcriptional regul 35.8 2.6E+02 0.0056 23.3 8.6 72 45-117 34-110 (229)
326 PRK12738 kbaY tagatose-bisphos 35.5 98 0.0021 28.7 5.9 59 45-103 156-224 (286)
327 TIGR01859 fruc_bis_ald_ fructo 35.3 1.6E+02 0.0035 27.1 7.3 28 62-89 20-47 (282)
328 PRK07403 glyceraldehyde-3-phos 35.3 1.4E+02 0.003 28.4 7.0 86 1-89 12-121 (337)
329 COG0300 DltE Short-chain dehyd 35.3 1.3E+02 0.0028 27.6 6.6 72 1-92 18-94 (265)
330 PRK01395 V-type ATP synthase s 35.2 1E+02 0.0022 24.2 5.1 65 63-128 26-98 (104)
331 PLN02740 Alcohol dehydrogenase 34.8 1.4E+02 0.0031 27.9 7.1 35 57-92 268-304 (381)
332 PF04321 RmlD_sub_bind: RmlD s 34.7 89 0.0019 28.3 5.5 72 1-90 12-101 (286)
333 PLN02254 gibberellin 3-beta-di 34.6 56 0.0012 31.1 4.3 37 62-99 59-95 (358)
334 cd06331 PBP1_AmiC_like Type I 34.6 82 0.0018 28.5 5.3 57 43-100 173-232 (333)
335 TIGR02915 PEP_resp_reg putativ 34.6 2.1E+02 0.0047 27.2 8.4 49 44-93 27-83 (445)
336 PF10087 DUF2325: Uncharacteri 34.5 92 0.002 23.5 4.8 36 82-117 48-87 (97)
337 cd06311 PBP1_ABC_sugar_binding 34.4 2.5E+02 0.0054 24.2 8.2 38 50-87 53-90 (274)
338 PRK08643 acetoin reductase; Va 34.4 2.2E+02 0.0048 24.4 7.8 73 1-93 14-90 (256)
339 PRK09140 2-dehydro-3-deoxy-6-p 34.3 2E+02 0.0044 25.0 7.5 63 55-118 33-96 (206)
340 PRK07709 fructose-bisphosphate 34.3 1.9E+02 0.0041 26.8 7.6 28 62-89 22-49 (285)
341 PRK11150 rfaD ADP-L-glycero-D- 34.2 1.5E+02 0.0034 26.4 7.0 87 1-91 11-117 (308)
342 cd05279 Zn_ADH1 Liver alcohol 34.2 1.3E+02 0.0029 27.8 6.7 35 56-91 252-288 (365)
343 cd00954 NAL N-Acetylneuraminic 34.0 1.4E+02 0.0031 27.1 6.8 12 82-93 70-81 (288)
344 PRK07890 short chain dehydroge 34.0 2E+02 0.0043 24.6 7.5 72 1-92 17-92 (258)
345 cd00477 FTHFS Formyltetrahydro 33.7 2E+02 0.0043 29.2 8.0 101 69-169 343-462 (524)
346 PRK07825 short chain dehydroge 33.5 1.9E+02 0.0041 25.3 7.3 70 1-92 17-88 (273)
347 PRK10481 hypothetical protein; 33.5 2.3E+02 0.005 25.3 7.8 47 68-115 168-215 (224)
348 PRK13111 trpA tryptophan synth 33.5 2.1E+02 0.0046 26.0 7.7 46 70-116 105-155 (258)
349 PTZ00386 formyl tetrahydrofola 33.5 1.3E+02 0.0027 31.1 6.6 99 71-169 426-546 (625)
350 PRK07984 enoyl-(acyl carrier p 33.5 2.4E+02 0.0053 24.9 8.1 33 61-93 61-95 (262)
351 PRK08862 short chain dehydroge 33.4 2.4E+02 0.0053 24.3 7.9 71 1-91 17-92 (227)
352 PRK10336 DNA-binding transcrip 33.4 2.7E+02 0.0058 22.7 8.6 46 45-90 32-80 (219)
353 PRK07688 thiamine/molybdopteri 33.4 72 0.0016 30.1 4.8 32 57-89 116-148 (339)
354 TIGR02634 xylF D-xylose ABC tr 33.3 2.3E+02 0.0049 25.4 7.9 38 50-88 47-85 (302)
355 cd00532 MGS-like MGS-like doma 33.1 73 0.0016 24.7 4.1 37 50-87 60-104 (112)
356 PLN00016 RNA-binding protein; 33.1 2.9E+02 0.0063 25.8 8.9 84 1-86 68-161 (378)
357 CHL00148 orf27 Ycf27; Reviewed 33.0 2.9E+02 0.0062 23.0 8.5 51 44-94 37-89 (240)
358 cd06317 PBP1_ABC_sugar_binding 33.0 1.9E+02 0.0041 24.8 7.1 38 51-88 50-87 (275)
359 PRK05597 molybdopterin biosynt 33.0 73 0.0016 30.2 4.8 32 57-89 118-150 (355)
360 PRK00724 formate dehydrogenase 32.9 2E+02 0.0043 26.1 7.5 57 63-119 176-237 (263)
361 cd06361 PBP1_GPC6A_like Ligand 32.9 2.3E+02 0.005 27.0 8.3 41 53-94 230-271 (403)
362 TIGR00167 cbbA ketose-bisphosp 32.7 1.8E+02 0.0039 26.9 7.2 20 111-132 108-127 (288)
363 PRK12429 3-hydroxybutyrate deh 32.7 2.3E+02 0.0049 24.1 7.6 72 1-92 16-91 (258)
364 PRK07109 short chain dehydroge 32.7 2.1E+02 0.0047 26.3 7.8 72 1-92 20-95 (334)
365 TIGR01282 nifD nitrogenase mol 32.6 71 0.0015 31.5 4.8 69 61-133 236-304 (466)
366 PRK13111 trpA tryptophan synth 32.6 91 0.002 28.3 5.2 55 50-105 110-166 (258)
367 PRK14851 hypothetical protein; 32.6 77 0.0017 33.0 5.2 32 57-89 133-167 (679)
368 PRK08589 short chain dehydroge 32.4 3E+02 0.0065 24.1 8.5 71 1-92 18-92 (272)
369 PF03599 CdhD: CO dehydrogenas 32.4 69 0.0015 31.1 4.5 46 66-113 80-129 (386)
370 cd06316 PBP1_ABC_sugar_binding 32.4 2E+02 0.0044 25.2 7.4 37 50-87 49-86 (294)
371 PRK09987 dTDP-4-dehydrorhamnos 32.4 2.6E+02 0.0057 25.1 8.2 75 1-90 12-104 (299)
372 PRK02472 murD UDP-N-acetylmura 32.3 4.5E+02 0.0098 25.0 11.2 127 1-148 16-166 (447)
373 TIGR02875 spore_0_A sporulatio 32.3 1.8E+02 0.004 25.3 7.0 71 45-116 36-111 (262)
374 PRK07411 hypothetical protein; 32.3 72 0.0016 30.7 4.7 35 57-92 128-164 (390)
375 PRK08762 molybdopterin biosynt 32.3 89 0.0019 29.7 5.3 33 57-90 225-258 (376)
376 PF04348 LppC: LppC putative l 32.2 1.1E+02 0.0023 30.9 6.0 55 56-113 253-311 (536)
377 cd06320 PBP1_allose_binding Pe 32.2 3.3E+02 0.0071 23.4 10.8 40 50-89 50-89 (275)
378 cd06343 PBP1_ABC_ligand_bindin 32.1 3.9E+02 0.0085 24.3 9.6 56 44-100 186-244 (362)
379 cd01492 Aos1_SUMO Ubiquitin ac 32.1 89 0.0019 27.0 4.8 35 57-92 110-146 (197)
380 PRK05600 thiamine biosynthesis 32.1 87 0.0019 30.0 5.2 33 57-90 131-164 (370)
381 PRK06114 short chain dehydroge 32.1 3.3E+02 0.0072 23.4 8.6 73 1-92 20-96 (254)
382 PRK01130 N-acetylmannosamine-6 32.1 1.6E+02 0.0035 25.4 6.5 15 73-87 79-93 (221)
383 cd01540 PBP1_arabinose_binding 32.0 1.8E+02 0.0039 25.3 6.9 39 50-88 47-85 (289)
384 PRK07063 short chain dehydroge 31.9 1.9E+02 0.0042 24.9 7.1 72 1-92 19-96 (260)
385 cd00946 FBP_aldolase_IIA Class 31.8 1.9E+02 0.0042 27.6 7.4 45 48-92 6-50 (345)
386 COG2984 ABC-type uncharacteriz 31.7 3.8E+02 0.0082 25.5 9.1 89 46-146 77-194 (322)
387 PRK09880 L-idonate 5-dehydroge 31.7 1.5E+02 0.0032 27.2 6.5 33 58-91 236-269 (343)
388 cd06356 PBP1_Amide_Urea_BP_lik 31.5 3.4E+02 0.0074 24.6 8.9 40 43-83 173-212 (334)
389 COG0157 NadC Nicotinate-nucleo 31.4 1.4E+02 0.003 27.8 6.1 62 37-102 192-253 (280)
390 PRK10046 dpiA two-component re 31.3 3.2E+02 0.007 23.2 8.3 71 45-117 38-112 (225)
391 PLN03154 putative allyl alcoho 31.2 1.6E+02 0.0034 27.3 6.6 87 1-90 171-260 (348)
392 cd08249 enoyl_reductase_like e 31.1 1.9E+02 0.0041 26.3 7.2 87 1-91 167-257 (339)
393 PRK08644 thiamine biosynthesis 31.0 1E+02 0.0022 26.9 5.1 31 57-88 117-149 (212)
394 cd01137 PsaA Metal binding pro 30.9 2E+02 0.0042 26.3 7.1 33 71-103 215-247 (287)
395 smart00859 Semialdhyde_dh Semi 30.9 2E+02 0.0042 22.2 6.3 89 1-93 11-103 (122)
396 TIGR03022 WbaP_sugtrans Undeca 30.9 2.9E+02 0.0062 26.7 8.7 75 2-83 137-216 (456)
397 PRK06200 2,3-dihydroxy-2,3-dih 30.9 2.1E+02 0.0045 24.8 7.1 72 1-93 18-91 (263)
398 COG1086 Predicted nucleoside-d 30.8 1.6E+02 0.0034 30.3 6.8 78 2-86 128-208 (588)
399 TIGR02317 prpB methylisocitrat 30.8 4.4E+02 0.0095 24.4 10.4 58 55-118 172-235 (285)
400 TIGR03407 urea_ABC_UrtA urea A 30.7 3.6E+02 0.0078 24.8 9.0 55 44-100 176-234 (359)
401 PRK15116 sulfur acceptor prote 30.7 1.1E+02 0.0025 28.0 5.5 32 80-111 119-152 (268)
402 cd06374 PBP1_mGluR_groupI Liga 30.7 2.7E+02 0.0057 27.0 8.4 50 45-94 231-284 (472)
403 PRK05835 fructose-bisphosphate 30.5 2.2E+02 0.0048 26.7 7.4 28 62-89 21-48 (307)
404 PRK07814 short chain dehydroge 30.5 2.8E+02 0.006 24.1 7.9 72 1-92 22-97 (263)
405 PRK12475 thiamine/molybdopteri 30.5 88 0.0019 29.5 4.9 32 57-89 116-148 (338)
406 COG3707 AmiR Response regulato 30.5 3.6E+02 0.0078 23.7 8.2 48 56-103 49-98 (194)
407 cd00755 YgdL_like Family of ac 30.5 1.4E+02 0.0029 26.7 5.8 29 58-87 103-132 (231)
408 PRK07634 pyrroline-5-carboxyla 30.4 2.9E+02 0.0062 23.9 7.9 106 1-117 15-127 (245)
409 PLN02260 probable rhamnose bio 30.3 2.3E+02 0.0049 28.9 8.1 22 70-91 461-482 (668)
410 PRK06728 aspartate-semialdehyd 30.3 2.2E+02 0.0048 27.1 7.5 100 2-117 18-135 (347)
411 cd06333 PBP1_ABC-type_HAAT_lik 30.1 2E+02 0.0044 25.5 7.0 50 47-97 178-228 (312)
412 cd05211 NAD_bind_Glu_Leu_Phe_V 30.0 3.5E+02 0.0075 23.8 8.3 106 1-116 34-152 (217)
413 cd02070 corrinoid_protein_B12- 29.8 3.6E+02 0.0077 23.1 9.3 65 48-118 124-196 (201)
414 PF13941 MutL: MutL protein 29.8 2.7E+02 0.0059 27.6 8.3 64 50-113 117-186 (457)
415 TIGR02819 fdhA_non_GSH formald 29.7 1.4E+02 0.0031 28.3 6.2 84 2-90 198-301 (393)
416 PRK13507 formate--tetrahydrofo 29.6 2.3E+02 0.0049 29.1 7.7 98 71-168 390-506 (587)
417 PRK07074 short chain dehydroge 29.6 3.2E+02 0.0069 23.4 8.0 73 1-93 14-88 (257)
418 PRK10128 2-keto-3-deoxy-L-rham 29.6 2.6E+02 0.0057 25.5 7.7 51 63-116 188-242 (267)
419 cd01020 TroA_b Metal binding p 29.5 2.4E+02 0.0052 25.2 7.4 11 105-115 206-217 (264)
420 PRK07677 short chain dehydroge 29.5 3.2E+02 0.007 23.4 8.0 72 1-92 13-88 (252)
421 cd05017 SIS_PGI_PMI_1 The memb 29.4 1.9E+02 0.004 22.4 5.9 49 58-110 44-95 (119)
422 smart00481 POLIIIAc DNA polyme 29.3 1.8E+02 0.0039 20.0 5.3 34 56-89 27-61 (67)
423 PRK05876 short chain dehydroge 29.3 2.6E+02 0.0056 24.8 7.5 72 1-92 18-93 (275)
424 cd01409 SIRT4 SIRT4: Eukaryoti 29.2 1.3E+02 0.0027 27.3 5.5 53 57-109 180-235 (260)
425 PF00582 Usp: Universal stress 29.2 2E+02 0.0043 21.2 6.0 52 61-112 81-140 (140)
426 cd06330 PBP1_Arsenic_SBP_like 29.2 1.9E+02 0.0042 26.1 6.8 50 44-94 182-234 (346)
427 TIGR03586 PseI pseudaminic aci 29.1 3.2E+02 0.0069 25.8 8.3 9 143-151 218-226 (327)
428 PF01565 FAD_binding_4: FAD bi 29.1 92 0.002 24.5 4.1 34 61-94 3-36 (139)
429 COG0561 Cof Predicted hydrolas 29.1 1.2E+02 0.0026 26.7 5.3 46 67-113 21-67 (264)
430 PRK11173 two-component respons 29.0 3.1E+02 0.0067 23.1 7.7 52 44-95 34-87 (237)
431 TIGR01534 GAPDH-I glyceraldehy 29.0 2.3E+02 0.0049 26.8 7.3 86 1-89 10-121 (327)
432 PRK06196 oxidoreductase; Provi 29.0 2.5E+02 0.0054 25.3 7.5 70 1-92 38-109 (315)
433 PLN02156 gibberellin 2-beta-di 29.0 65 0.0014 30.4 3.7 37 62-99 29-65 (335)
434 PRK15456 universal stress prot 28.9 2.3E+02 0.0049 22.2 6.5 48 61-110 86-140 (142)
435 TIGR03366 HpnZ_proposed putati 28.9 1.7E+02 0.0037 26.0 6.3 33 57-90 187-220 (280)
436 cd05282 ETR_like 2-enoyl thioe 28.9 1.6E+02 0.0034 26.1 6.1 90 1-93 151-242 (323)
437 cd08301 alcohol_DH_plants Plan 28.8 1.9E+02 0.004 26.8 6.7 34 57-91 257-292 (369)
438 PF03102 NeuB: NeuB family; I 28.8 81 0.0018 28.5 4.1 28 72-99 103-130 (241)
439 TIGR00262 trpA tryptophan synt 28.8 3.8E+02 0.0082 24.1 8.5 54 62-116 92-153 (256)
440 PRK12937 short chain dehydroge 28.8 2.7E+02 0.0059 23.5 7.4 73 1-92 17-93 (245)
441 PRK08594 enoyl-(acyl carrier p 28.7 3E+02 0.0065 24.0 7.8 75 1-92 21-97 (257)
442 TIGR02415 23BDH acetoin reduct 28.7 3.1E+02 0.0068 23.3 7.8 73 1-93 12-88 (254)
443 cd06376 PBP1_mGluR_groupIII Li 28.6 1.1E+02 0.0024 29.5 5.3 49 45-94 218-270 (463)
444 TIGR00640 acid_CoA_mut_C methy 28.6 3.2E+02 0.0069 22.1 12.6 77 48-128 44-127 (132)
445 cd06278 PBP1_LacI_like_2 Ligan 28.5 3.6E+02 0.0079 22.8 11.0 37 50-88 47-83 (266)
446 cd02067 B12-binding B12 bindin 28.5 2.7E+02 0.0059 21.3 8.0 44 51-94 44-93 (119)
447 PF01073 3Beta_HSD: 3-beta hyd 28.4 2.8E+02 0.0062 25.0 7.7 17 1-17 9-27 (280)
448 cd06332 PBP1_aromatic_compound 28.4 1.9E+02 0.0041 25.7 6.5 51 44-95 173-226 (333)
449 cd08233 butanediol_DH_like (2R 28.4 2E+02 0.0044 26.2 6.9 33 58-91 242-275 (351)
450 PF04055 Radical_SAM: Radical 28.3 1.1E+02 0.0024 23.7 4.5 35 68-102 126-164 (166)
451 PRK12857 fructose-1,6-bisphosp 28.2 1.3E+02 0.0029 27.8 5.5 23 81-103 201-224 (284)
452 cd06388 PBP1_iGluR_AMPA_GluR4 28.1 2.9E+02 0.0063 26.0 8.0 56 44-100 165-225 (371)
453 TIGR01387 cztR_silR_copR heavy 28.1 3.3E+02 0.0071 22.1 8.4 52 45-96 30-84 (218)
454 PRK08339 short chain dehydroge 28.0 2.8E+02 0.006 24.3 7.4 72 1-92 20-95 (263)
455 PRK10529 DNA-binding transcrip 28.0 3.4E+02 0.0075 22.3 8.2 72 45-117 33-106 (225)
456 PRK09836 DNA-binding transcrip 28.0 3.5E+02 0.0076 22.4 8.5 72 45-117 32-106 (227)
457 PRK12744 short chain dehydroge 28.0 3.5E+02 0.0076 23.3 8.0 32 61-92 66-99 (257)
458 TIGR02853 spore_dpaA dipicolin 27.9 1.5E+02 0.0033 27.2 5.9 18 1-18 162-179 (287)
459 cd06335 PBP1_ABC_ligand_bindin 27.9 1.2E+02 0.0025 27.8 5.2 53 43-96 179-232 (347)
460 PRK13399 fructose-1,6-bisphosp 27.9 2.6E+02 0.0056 26.8 7.5 32 60-91 20-51 (347)
461 PRK06130 3-hydroxybutyryl-CoA 27.8 1.4E+02 0.003 27.2 5.6 93 1-100 15-126 (311)
462 cd05014 SIS_Kpsf KpsF-like pro 27.8 1.4E+02 0.0029 23.0 4.9 34 58-92 48-84 (128)
463 PRK13125 trpA tryptophan synth 27.5 3.3E+02 0.0071 24.1 7.8 69 45-113 89-161 (244)
464 PRK07806 short chain dehydroge 27.5 3.8E+02 0.0083 22.7 8.4 76 1-93 18-95 (248)
465 PF02786 CPSase_L_D2: Carbamoy 27.4 37 0.00079 29.9 1.6 42 76-117 7-50 (211)
466 PRK14852 hypothetical protein; 27.4 1E+02 0.0022 33.5 5.2 33 57-90 422-457 (989)
467 cd08285 NADP_ADH NADP(H)-depen 27.4 2E+02 0.0043 26.2 6.6 33 57-90 235-268 (351)
468 TIGR03023 WcaJ_sugtrans Undeca 27.4 3.2E+02 0.0069 26.4 8.3 79 2-88 140-224 (451)
469 PRK13753 dihydropteroate synth 27.3 2E+02 0.0044 26.6 6.5 57 49-110 68-124 (279)
470 PRK07679 pyrroline-5-carboxyla 27.3 4.5E+02 0.0098 23.5 8.9 104 1-115 14-125 (279)
471 cd01309 Met_dep_hydrolase_C Me 27.3 2.6E+02 0.0057 26.2 7.5 54 61-115 195-248 (359)
472 cd08289 MDR_yhfp_like Yhfp put 27.2 2.2E+02 0.0049 25.2 6.8 34 57-91 213-246 (326)
473 PRK13396 3-deoxy-7-phosphohept 27.2 3.6E+02 0.0078 25.8 8.3 81 67-152 220-313 (352)
474 cd00740 MeTr MeTr subgroup of 27.1 1.9E+02 0.0042 26.1 6.3 51 60-112 72-126 (252)
475 cd08274 MDR9 Medium chain dehy 27.0 2.4E+02 0.0053 25.4 7.1 34 56-90 242-275 (350)
476 PRK08610 fructose-bisphosphate 27.0 1.6E+02 0.0034 27.4 5.7 59 45-103 157-225 (286)
477 PRK07831 short chain dehydroge 27.0 2.8E+02 0.006 24.0 7.2 33 61-93 74-108 (262)
478 PRK06180 short chain dehydroge 27.0 3.4E+02 0.0074 23.8 7.9 72 1-93 16-89 (277)
479 PRK06841 short chain dehydroge 27.0 3.8E+02 0.0082 22.9 8.0 34 60-93 65-100 (255)
480 cd06315 PBP1_ABC_sugar_binding 27.0 3.2E+02 0.0069 23.9 7.7 40 49-88 48-87 (280)
481 PRK15461 NADH-dependent gamma- 27.0 3.5E+02 0.0076 24.6 8.1 22 1-23 12-33 (296)
482 TIGR01319 glmL_fam conserved h 26.9 3.2E+02 0.0069 27.3 8.1 64 49-113 112-182 (463)
483 PRK01710 murD UDP-N-acetylmura 26.7 5.9E+02 0.013 24.6 11.9 20 2-22 26-45 (458)
484 TIGR02818 adh_III_F_hyde S-(hy 26.7 2.2E+02 0.0048 26.4 6.9 34 57-91 255-290 (368)
485 cd06365 PBP1_Pheromone_recepto 26.7 3.7E+02 0.008 26.1 8.6 48 46-94 220-269 (469)
486 COG1456 CdhE CO dehydrogenase/ 26.6 1.5E+02 0.0033 28.8 5.6 24 67-90 144-167 (467)
487 PRK08610 fructose-bisphosphate 26.5 3E+02 0.0064 25.6 7.5 25 106-132 102-127 (286)
488 TIGR01381 E1_like_apg7 E1-like 26.5 1.2E+02 0.0026 31.6 5.2 36 57-93 448-484 (664)
489 PRK09390 fixJ response regulat 26.4 2E+02 0.0044 22.7 5.9 52 45-96 35-89 (202)
490 PRK12823 benD 1,6-dihydroxycyc 26.4 4.1E+02 0.009 22.7 8.4 71 1-92 20-94 (260)
491 PRK11475 DNA-binding transcrip 26.4 4.3E+02 0.0092 22.9 9.5 71 46-117 26-103 (207)
492 TIGR02463 MPGP_rel mannosyl-3- 26.4 1.7E+02 0.0036 24.9 5.6 31 71-102 21-51 (221)
493 cd08287 FDH_like_ADH3 formalde 26.3 1.9E+02 0.0041 26.1 6.2 34 57-91 237-271 (345)
494 cd06281 PBP1_LacI_like_5 Ligan 26.2 4.2E+02 0.009 22.7 10.9 40 50-90 48-87 (269)
495 PRK05872 short chain dehydroge 26.2 3.3E+02 0.0072 24.3 7.8 71 1-92 21-95 (296)
496 cd06329 PBP1_SBP_like_3 Peripl 26.2 2.5E+02 0.0053 25.5 7.0 51 44-95 188-239 (342)
497 cd01424 MGS_CPS_II Methylglyox 26.1 1.1E+02 0.0024 23.4 4.0 35 51-86 61-99 (110)
498 TIGR02356 adenyl_thiF thiazole 26.1 4E+02 0.0086 22.9 7.9 33 82-114 111-145 (202)
499 PF08821 CGGC: CGGC domain; I 26.0 1.2E+02 0.0026 23.9 4.2 19 71-89 87-106 (107)
500 PRK08217 fabG 3-ketoacyl-(acyl 25.9 3.8E+02 0.0082 22.6 7.8 33 60-92 58-92 (253)
No 1
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=1.3e-74 Score=523.74 Aligned_cols=262 Identities=65% Similarity=1.041 Sum_probs=234.7
Q ss_pred ChHHHHHHHHhCCCeEEEE-EcCCCccccccc-cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPV-SFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~-~~~~~~~~g~~~-~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
|||++++++.++||+||++ +++. ..+.+. .+.+.++++.+++|+...|+++.+..+|+|+||||+|+++++|+++|
T Consensus 12 MG~~v~~av~~~~~~Lv~~~~~~~--~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~ 89 (275)
T TIGR02130 12 MGKAVAEAADAAGLEIVPTSFGGE--EEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYTHPSAVNDNAAFY 89 (275)
T ss_pred HHHHHHHHHhcCCCEEEeeEcccc--ccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECCChHHHHHHHHHH
Confidence 9999999998899999998 5432 233343 34445788877788777777766555886799999999999999999
Q ss_pred HhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCCCcHHH
Q 024671 79 SKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTA 158 (264)
Q Consensus 79 ~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~DaSGTA 158 (264)
.++|+|+|+|||||++++++++++++++|+|||||||+|+|+|++++++++++|+++|++||+||+|+||++|+|+||||
T Consensus 90 ~~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f~~ydvEIiE~HH~~K~DaSGTA 169 (275)
T TIGR02130 90 GKHGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADASGTA 169 (275)
T ss_pred HHCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCCCCCCCCCHHH
Confidence 99999999999999999999999988899999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCcchhhhccCcccccccccccCCCcCcceeEEEEEcCCCceEEEEEEEEecCcccchHHHHHHHHH
Q 024671 159 KAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLF 238 (264)
Q Consensus 159 l~l~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~r~g~i~gha~H~v~f~~~~E~i~lei~H~a~sR~~FA~GAl~Aa~~ 238 (264)
++|++.+++++..++++++...|+++.+++++++|++.+.||++|+|+|.+++|+|.|||+|+|+||++||.||++||+|
T Consensus 170 ~~l~~~i~~~~~~~~~~~~~~~R~~~~~igi~siR~~~vgGh~~Htv~f~s~~e~i~iel~H~A~sR~~FA~GAl~AA~w 249 (275)
T TIGR02130 170 KAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEEHLGGHAFHLYHLDSADGTVHFEFQHNVCGRKIYAEGTVDAVLF 249 (275)
T ss_pred HHHHHHHHHhCCccCcccccccCCCCCccceEEecCcccCCCccEEEEEecCCCeEEEEEEEEECcHHHHHHHHHHHHHH
Confidence 99999987777667777777778776579999999988888999999999999996669999999999999999999999
Q ss_pred HhhcccccCCCceeehhHHhhcCCCC
Q 024671 239 LSKKVQLKADKRIYNMIDVLREGNMR 264 (264)
Q Consensus 239 l~~k~~~~~~~G~Y~m~dvl~~~~~~ 264 (264)
|.+|+++.++||+|+|+|||++++||
T Consensus 250 L~~k~~~~~~~GlY~m~DvL~~~~~~ 275 (275)
T TIGR02130 250 LADKIIAAAEAKIFNMIDVLREGKMR 275 (275)
T ss_pred HhcccccCCCCCccCHHHHHhhcCCC
Confidence 99998888889999999999999997
No 2
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=1.5e-71 Score=505.77 Aligned_cols=262 Identities=78% Similarity=1.152 Sum_probs=221.8
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccc--cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV--EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~--~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
||+++++++.+++++||++++..+ .|.+. .+.+.+++++.++|++++|.+..+..||+|+||||+|+++++|+++|
T Consensus 23 MG~~~~~av~~~~~~Lv~~~~~~~--~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~ 100 (286)
T PLN02775 23 MGHAVAEAAVSAGLQLVPVSFTGP--AGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELY 100 (286)
T ss_pred HHHHHHHHHhcCCCEEEEEecccc--ccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHH
Confidence 999999999889999999988543 22222 23344788887899999998776667996799999999999999999
Q ss_pred HhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCCCcHHH
Q 024671 79 SKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTA 158 (264)
Q Consensus 79 ~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~DaSGTA 158 (264)
+++|+|+|+|||||+++++++++++.++|+|||||||+|+|+|++++++++++|++.|++||+||+|+||++|+|+||||
T Consensus 101 ~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~l~~~f~~yDiEIiE~HH~~K~DaSGTA 180 (286)
T PLN02775 101 CKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAMEIMAEQFPGAFSGYTLEVVESHQATKLDTSGTA 180 (286)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhcccccCCCCEEEEECCCCCCCCCcHHH
Confidence 99999999999999999999998877799999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCcchhhhccCcccccccccccCCCcCcceeEEEEEcCCCceEEEEEEEEecCcccchHHHHHHHHH
Q 024671 159 KAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLF 238 (264)
Q Consensus 159 l~l~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~r~g~i~gha~H~v~f~~~~E~i~lei~H~a~sR~~FA~GAl~Aa~~ 238 (264)
++|++.++.+|..++++++...|++.++....+++...+.||++|+|+|.+++|+++|||+|+|+||++||+|||+||+|
T Consensus 181 ~~lae~i~~~g~~~~~~~~~~~R~~~~~~~~igi~~~~lRgg~~HtV~f~~~~E~~~iel~H~A~sR~~FA~GAv~AA~w 260 (286)
T PLN02775 181 KAVISSFRKLGVSFDMDQIELIRDPKQQLEGVGVPEEHLNGHAFHTYRLTSPDGTVSFEFQHNVCGRSIYAEGTVDAVLF 260 (286)
T ss_pred HHHHHHHHHhCCcccccccccccCccccccccceeeecccCCCcEEEEEecCCCeEEEEEEEEeCcHHHHHHHHHHHHHH
Confidence 99999997777665555555566554322222222222334449999999999994459999999999999999999999
Q ss_pred HhhcccccCCCceeehhHHhhcCCCC
Q 024671 239 LSKKVQLKADKRIYNMIDVLREGNMR 264 (264)
Q Consensus 239 l~~k~~~~~~~G~Y~m~dvl~~~~~~ 264 (264)
|.+|.++..+||+|+|.|||+++.||
T Consensus 261 L~~k~~~~~~pGlY~M~DVL~~~~~~ 286 (286)
T PLN02775 261 LAKKIAEGADKRIYNMIDVLREGNMR 286 (286)
T ss_pred HhcCcccCCCCCccCHHHHHhhcCCC
Confidence 99996666668999999999999986
No 3
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-71 Score=492.37 Aligned_cols=238 Identities=26% Similarity=0.361 Sum_probs=204.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCc-cccccc----cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEE-ESGQKV----EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN 74 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~-~~g~~~----~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~ 74 (264)
|||+|++++. .++++|++++++.+. ..|.|. +.+..++++.+ |+... ...+| |+||||+|+++++|
T Consensus 14 MG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~--~~~~~-----~~~~D-V~IDFT~P~~~~~~ 85 (266)
T COG0289 14 MGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTD--DLLLV-----KADAD-VLIDFTTPEATLEN 85 (266)
T ss_pred HHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeec--chhhc-----ccCCC-EEEECCCchhhHHH
Confidence 9999999998 689999999996543 445554 44555778753 33222 24688 89999999999999
Q ss_pred HHHHHhcCCCeEEecCCCCHHHHHHHHHccC-CcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCC
Q 024671 75 AELYSKVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLD 153 (264)
Q Consensus 75 ~~~~~~~g~plViGTTG~~~~~~~~l~~~~~-~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~D 153 (264)
+++|.++++++|||||||++++++.+.++++ +|+|+|||||+|||+|++++++++++|+ +|||||+|+||++|+|
T Consensus 86 l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~----~~DiEIiE~HHr~K~D 161 (266)
T COG0289 86 LEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD----DYDIEIIEAHHRHKKD 161 (266)
T ss_pred HHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhcC----CCCEEehhhhcccCCC
Confidence 9999999999999999999999999988877 9999999999999999999999999984 8999999999999999
Q ss_pred C-cHHHHHHHHHHHh-cCCcc------CcchhhhccCcccccccccccCCCcCcceeEEEEEcCCCceEEEEEEEEecCc
Q 024671 154 T-SGTAKAVISCFQK-LGVSF------DMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGR 225 (264)
Q Consensus 154 a-SGTAl~l~~~i~~-~~~~~------~~~~~~~~r~~~~~~~~~~~r~g~i~gha~H~v~f~~~~E~i~lei~H~a~sR 225 (264)
| ||||++|++.+++ ++..+ .|+.....|.+ +.+|++++|+|+|+| +|+|+|.++||+| ||+|+|+||
T Consensus 162 APSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~-~~Igi~svR~G~ivG--~H~V~F~~~GE~i--ei~H~A~sR 236 (266)
T COG0289 162 APSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKE-GEIGIHSVRGGDIVG--EHEVIFAGEGERI--EIRHRATSR 236 (266)
T ss_pred CCcHHHHHHHHHHHHhhccccccceeecccCCcCCCCC-CCceeEEeecCCcce--eEEEEEecCCcEE--EEEEeeccH
Confidence 9 9999999998865 44221 22333333432 358999999999999 8999999999997 999999999
Q ss_pred ccchHHHHHHHHHHhhcccccCCCceeehhHHhhc
Q 024671 226 SIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLRE 260 (264)
Q Consensus 226 ~~FA~GAl~Aa~~l~~k~~~~~~~G~Y~m~dvl~~ 260 (264)
.+||+||++||+|+.+| +||+|+|+|||+.
T Consensus 237 ~~Fa~Gal~aa~wi~~k-----~~g~Y~m~dvL~l 266 (266)
T COG0289 237 DSFARGALLAARWLVGK-----PPGLYDMEDVLGL 266 (266)
T ss_pred HHHHHHHHHHHHHHhCC-----CCCccchHHhhcc
Confidence 99999999999999999 9999999999963
No 4
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=100.00 E-value=5.6e-61 Score=435.36 Aligned_cols=237 Identities=27% Similarity=0.410 Sum_probs=196.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCC-Cccccccc----cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGT-EEESGQKV----EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN 74 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~-~~~~g~~~----~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~ 74 (264)
||+.+++.+. .++++|++++++. +...++++ +....+++++ +|+++. . ..+| |+||||.|++..++
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~--~d~~~l-~----~~~D-vVIdfT~p~~~~~~ 84 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVT--DDLEAV-E----TDPD-VLIDFTTPEGVLNH 84 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceee--CCHHHh-c----CCCC-EEEECCChHHHHHH
Confidence 8999999998 6899999998843 22334443 2222345554 465543 1 3589 89999999999999
Q ss_pred HHHHHhcCCCeEEecCCCCHHHHHHHHHc---cCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCC
Q 024671 75 AELYSKVGVPFVMGTTGGDRVRLHETIEN---SNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGK 151 (264)
Q Consensus 75 ~~~~~~~g~plViGTTG~~~~~~~~l~~~---~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K 151 (264)
++.|+++|+|+|+|||||++++.+++.++ +++|++++||||+|+|+|++++++++++| ++||+||+|+||++|
T Consensus 85 ~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l----~~~dieI~E~HH~~K 160 (266)
T TIGR00036 85 LKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYL----GDYDIEIIELHHRHK 160 (266)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhc----cCCCEEeeeeccCCC
Confidence 99999999999999999998877666544 45899999999999999999999999988 479999999999999
Q ss_pred CCC-cHHHHHHHHHHHh-cCCc------cCcchhhhccCcccccccccccCCCcCcceeEEEEEcCCCceEEEEEEEEec
Q 024671 152 LDT-SGTAKAVISCFQK-LGVS------FDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVC 223 (264)
Q Consensus 152 ~Da-SGTAl~l~~~i~~-~~~~------~~~~~~~~~r~~~~~~~~~~~r~g~i~gha~H~v~f~~~~E~i~lei~H~a~ 223 (264)
+|+ ||||++|++.+.+ ++.. +.++.....|++ +.++++++|+|+++| +|+|+|.+++|+| ||+|+|+
T Consensus 161 ~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~r~~-~~i~i~s~R~g~i~g--~h~v~f~~~~e~i--~i~H~a~ 235 (266)
T TIGR00036 161 KDAPSGTALKTAEMIAEARGERLKNVAVTEREGLTGERGR-EEIGIHAVRGGDVVG--EHTVMFAGDGERL--EITHRAS 235 (266)
T ss_pred CCCCCHHHHHHHHHHHHhhccccccCccccccCCcCCCCC-CccceEEEecCCceE--EEEEEEcCCCeEE--EEEEEEC
Confidence 999 9999999998864 3221 122222234443 358999999999999 9999999999997 9999999
Q ss_pred CcccchHHHHHHHHHHhhcccccCCCceeehhHHhh
Q 024671 224 GRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLR 259 (264)
Q Consensus 224 sR~~FA~GAl~Aa~~l~~k~~~~~~~G~Y~m~dvl~ 259 (264)
||++||+|||+||+||.+| +||+|+|+|||+
T Consensus 236 ~R~~fa~Gal~Aa~~l~~~-----~~g~y~m~dvl~ 266 (266)
T TIGR00036 236 SRACFANGAVRAARWLADK-----EAGVYDMEDVLD 266 (266)
T ss_pred cHHHhHHHHHHHHHHHcCC-----CCcEEeHHHhcC
Confidence 9999999999999999999 999999999984
No 5
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=1.2e-58 Score=418.02 Aligned_cols=234 Identities=27% Similarity=0.387 Sum_probs=193.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
||+.+++.+. .++++|+++++..+...... ...++++ .+|+++.+. .+| ||||||.|+...++++.|+
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---~~~~i~~--~~dl~~ll~-----~~D-vVid~t~p~~~~~~~~~al 81 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---GALGVAI--TDDLEAVLA-----DAD-VLIDFTTPEATLENLEFAL 81 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCcccccc---CCCCccc--cCCHHHhcc-----CCC-EEEECCCHHHHHHHHHHHH
Confidence 8999999887 58999999888544221111 1123333 356665542 589 8999999999999999999
Q ss_pred hcCCCeEEecCCCCHHHHHHHHHccC-CcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCCC-cHH
Q 024671 80 KVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGT 157 (264)
Q Consensus 80 ~~g~plViGTTG~~~~~~~~l~~~~~-~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~Da-SGT 157 (264)
++|+|+|+|||||++++.+++.++++ +|++++||||+|+|++++++++++++|+ + ||+||+|+||++|+|+ |||
T Consensus 82 ~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~---~-~d~ei~E~HH~~K~DaPSGT 157 (257)
T PRK00048 82 EHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAAKYLG---D-YDIEIIEAHHRHKVDAPSGT 157 (257)
T ss_pred HcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHHHhcC---C-CCEEEEEccCCCCCCCCCHH
Confidence 99999999999999999888877645 9999999999999999999999999886 3 9999999999999999 999
Q ss_pred HHHHHHHHHh-cCCccCcc------hhhhccCcccccccccccCCCcCcceeEEEEEcCCCceEEEEEEEEecCcccchH
Q 024671 158 AKAVISCFQK-LGVSFDMD------QIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAE 230 (264)
Q Consensus 158 Al~l~~~i~~-~~~~~~~~------~~~~~r~~~~~~~~~~~r~g~i~gha~H~v~f~~~~E~i~lei~H~a~sR~~FA~ 230 (264)
|++|++.+.+ ++..++.. .....|. ...++++++|+|+++| +|+|+|++++|+| ||+|+|.||++||+
T Consensus 158 A~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~R~g~~~g--~h~v~f~~~~e~i--~i~H~a~~R~~fa~ 232 (257)
T PRK00048 158 ALKLAEAIAEARGRDLKEVAVYGREGATGARV-KGEIGIHSVRGGDIVG--EHEVIFAGDGERI--EIRHDATSRMSFAP 232 (257)
T ss_pred HHHHHHHHHHhhcccccccceeccCCccCCcC-CCCccEEEEEcCCceE--EEEEEEecCCcEE--EEEEEECcHHhHHH
Confidence 9999998864 33322111 1111121 1358999999999999 9999999999997 99999999999999
Q ss_pred HHHHHHHHHhhcccccCCCceeehhHHhh
Q 024671 231 GTVDAVLFLSKKVQLKADKRIYNMIDVLR 259 (264)
Q Consensus 231 GAl~Aa~~l~~k~~~~~~~G~Y~m~dvl~ 259 (264)
|||+||+|+.+| +||+|+|+|||+
T Consensus 233 Gal~aa~~~~~~-----~~g~y~~~d~l~ 256 (257)
T PRK00048 233 GALLAARWLVGK-----KPGLYGMEDVLG 256 (257)
T ss_pred HHHHHHHHHhCC-----CCcEECHHHhhC
Confidence 999999999999 899999999985
No 6
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=100.00 E-value=3e-41 Score=277.06 Aligned_cols=130 Identities=28% Similarity=0.444 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCCC-cHHHHHHHHHHHhcC-CccCcchhhhccCcccccccccccC
Q 024671 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLG-VSFDMDQIQMIRDPKQQLEMVGVPE 194 (264)
Q Consensus 117 Gv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~Da-SGTAl~l~~~i~~~~-~~~~~~~~~~~r~~~~~~~~~~~r~ 194 (264)
|||||++++++++++|+ ++||+||+|+||++|+|+ ||||++|++.+...+ ...+ ......|...++++++++|.
T Consensus 1 Gv~ll~~l~~~aa~~l~---~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~-~~~~~~~~~~~~i~v~s~R~ 76 (132)
T PF05173_consen 1 GVNLLMKLAKQAAKLLP---NGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLS-EVARGGREQENEIGVHSVRG 76 (132)
T ss_dssp HHHHHHHHHHHHHHHTT---TTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHH-HHEEECCGETTCEEEEEEE-
T ss_pred CHHHHHHHHHHHHHhcC---CCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCcccc-ccccccccCCccceEEEEEc
Confidence 89999999999999997 479999999999999999 999999999886533 2211 11123343445789999999
Q ss_pred CCcCcceeEEEEEcCCCceEEEEEEEEecCcccchHHHHHHHHHHhhcccccCCCceeehhHHh
Q 024671 195 EHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVL 258 (264)
Q Consensus 195 g~i~gha~H~v~f~~~~E~i~lei~H~a~sR~~FA~GAl~Aa~~l~~k~~~~~~~G~Y~m~dvl 258 (264)
|+++| +|+|+|++++|+| ||+|+|+||++||+||++||+||.++ .+||+|+|+|||
T Consensus 77 g~i~G--~H~V~f~~~~E~i--~l~H~a~sR~~Fa~Gal~Aa~~l~~~----~~~G~y~m~dvL 132 (132)
T PF05173_consen 77 GGIVG--EHEVIFGSPGETI--ELTHRAHSRSIFAEGALRAARWLAGK----KKPGLYSMDDVL 132 (132)
T ss_dssp TT--E--EEEEEEEETTEEE--EEEEEESSTHHHHHHHHHHHHHHTTS----SSSEEE-HHHHC
T ss_pred CCCCE--EEEEEEcCCCcEE--EEEEEeCCHHHHHHHHHHHHHHHhcC----CCCCEEehHHhC
Confidence 99999 9999999999997 99999999999999999999999994 069999999997
No 7
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.91 E-value=1.8e-24 Score=175.42 Aligned_cols=106 Identities=33% Similarity=0.476 Sum_probs=84.9
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCC-ccccccc----cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTE-EESGQKV----EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN 74 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~-~~~g~~~----~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~ 74 (264)
|||+|++.+. +++++|++++++.+ ...|+|+ +....+++++ +|++++++ .+| |+||||+|+++.++
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~--~~l~~~~~-----~~D-VvIDfT~p~~~~~~ 83 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT--DDLEELLE-----EAD-VVIDFTNPDAVYDN 83 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB--S-HHHHTT-----H-S-EEEEES-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc--hhHHHhcc-----cCC-EEEEcCChHHhHHH
Confidence 8999999998 59999999999765 4677776 3334466665 68777664 389 89999999999999
Q ss_pred HHHHHhcCCCeEEecCCCCHHHHHHHHHccC-CcEEEccch
Q 024671 75 AELYSKVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQM 114 (264)
Q Consensus 75 ~~~~~~~g~plViGTTG~~~~~~~~l~~~~~-~~~v~s~Nf 114 (264)
+++|+++|+|+|+|||||++++++.+.+.++ +|+||||||
T Consensus 84 ~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 84 LEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp HHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred HHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 9999999999999999999999999988766 999999998
No 8
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.16 E-value=3.5e-06 Score=79.28 Aligned_cols=68 Identities=15% Similarity=-0.031 Sum_probs=61.5
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC---CCHHHHHHHHHccCCcEEEccchhHHHHHHHHH
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG---~~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~ 124 (264)
..+| |+||||.++.+.++...|++.|+++|++++| +..+++.+++++.+.+++|++|++.|+-++..+
T Consensus 90 ~~~D-VvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~~l 160 (336)
T PRK08374 90 IDAD-IVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPIIGLL 160 (336)
T ss_pred CCCC-EEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCchHHH
Confidence 3578 8999999999999999999999999999999 777889999998889999999999998776543
No 9
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.10 E-value=3.5e-05 Score=70.09 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=72.2
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
||+.+++.+. .++++|++.++... .........+.+++++ .|+++. ...+| ++||+|.|....+++..|+
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~-~~~~~~~~~~~~~~~~--~d~~~l-----~~~~D-vVve~t~~~~~~e~~~~aL 82 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEH-SIDAVRRALGEAVRVV--SSVDAL-----PQRPD-LVVECAGHAALKEHVVPIL 82 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCC-CHHHHhhhhccCCeee--CCHHHh-----ccCCC-EEEECCCHHHHHHHHHHHH
Confidence 7999999887 57899998775321 1111111001133443 354432 24689 8999999999999999999
Q ss_pred hcCCCeEEecCC-CCHH----HHHHHHHccCCcEEEccchhHHH
Q 024671 80 KVGVPFVMGTTG-GDRV----RLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 80 ~~g~plViGTTG-~~~~----~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
++|+++|+.++| +++. .+.+++++++..+.+ |+.++|.
T Consensus 83 ~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg 125 (265)
T PRK13303 83 KAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGG 125 (265)
T ss_pred HcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhC
Confidence 999999999999 5432 345566666665544 6667776
No 10
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.24 E-value=0.00039 Score=55.00 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=63.5
Q ss_pred ChHHHHHHHH-hC---CCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHH
Q 024671 1 MGKAVIKAAD-AA---GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~-~~---~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (264)
||+.+++.+. ++ ++++++..++. .....+.........+ ..++++.++. ..+| ||||-|.++.+.+++.
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~d-vvVE~t~~~~~~~~~~ 77 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAF--TTDLEELIDD---PDID-VVVECTSSEAVAEYYE 77 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCE--ESSHHHHHTH---TT-S-EEEE-SSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccc--cCCHHHHhcC---cCCC-EEEECCCchHHHHHHH
Confidence 6899999997 33 89999887765 2211111000001112 2466665543 2588 8999999999999999
Q ss_pred HHHhcCCCeEEecCCCCH--H---HHHHHHHccCCcEE
Q 024671 77 LYSKVGVPFVMGTTGGDR--V---RLHETIENSNVYAV 109 (264)
Q Consensus 77 ~~~~~g~plViGTTG~~~--~---~~~~l~~~~~~~~v 109 (264)
.++++|+++|+...|.-. . ++.+++++.+..+.
T Consensus 78 ~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 78 KALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 999999999998888533 3 34445555555444
No 11
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.03 E-value=0.0017 Score=61.32 Aligned_cols=82 Identities=30% Similarity=0.354 Sum_probs=56.5
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCcc-------ccccc--------c-ccCceeEeecCCchhhHHhhhhcCCCCEEEE
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEE-------SGQKV--------E-VCGKEIQVHGLSDRESVLASVFDKYPNMIVV 63 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~-------~g~~~--------~-~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvI 63 (264)
|||.+++.+. +++++|+++.+..+.. .|-+. . ..+.++++. .++++.+ ..+| +||
T Consensus 12 IGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~--~~~~el~-----~~vD-VVI 83 (341)
T PRK04207 12 IGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVA--GTIEDLL-----EKAD-IVV 83 (341)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEc--CChhHhh-----ccCC-EEE
Confidence 7999999987 7899999987743210 01111 0 112245553 2444333 2578 899
Q ss_pred ECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 64 DYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 64 DFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
|||.+....++.+.|+++|+++|+-..
T Consensus 84 daT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 84 DATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred ECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 999999999999999999988777554
No 12
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.86 E-value=0.01 Score=53.92 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=69.3
Q ss_pred ChHHHHHHHHh-C-CCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADA-A-GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~-~-~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
||+.+++.+.+ . ++++++.+++...... .. ....+.+.+ .++++.+ ..+| +||+.+.|+...+++..+
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~-~~-a~~~~~~~~--~~~~ell-----~~~D-vVvi~a~~~~~~~~~~~a 81 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAE-NL-ASKTGAKAC--LSIDELV-----EDVD-LVVECASVNAVEEVVPKS 81 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHH-HH-HHhcCCeeE--CCHHHHh-----cCCC-EEEEcCChHHHHHHHHHH
Confidence 78888888774 3 7899988775432111 10 001123332 3555443 2689 899999999999999999
Q ss_pred HhcCCCeEEecCCC--CHH---HHHHHHHccCCcEEEccchhHHH
Q 024671 79 SKVGVPFVMGTTGG--DRV---RLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 79 ~~~g~plViGTTG~--~~~---~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
+++|+++++.++|- +.+ ++.+++++.+..+.+.+-.-.|.
T Consensus 82 l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 82 LENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred HHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 99999999998874 444 34445555555555544333334
No 13
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.42 E-value=0.023 Score=53.54 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=74.2
Q ss_pred ChHHHHHHHHh-C---------CCeEEEEEcCCCc---cccccc----cc-cCce-eEee----cCCchhhHHhhhhcCC
Q 024671 1 MGKAVIKAADA-A---------GLELVPVSFGTEE---ESGQKV----EV-CGKE-IQVH----GLSDRESVLASVFDKY 57 (264)
Q Consensus 1 MG~~i~~~~~~-~---------~~eLv~~~~~~~~---~~g~~~----~~-~~~~-i~i~----~~~dl~~~l~~~~~~~ 57 (264)
||+.+++.+.+ + +++|+++.++... ..|.+. .. ...+ +..+ ...++++.+. +..
T Consensus 13 VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~---~~~ 89 (341)
T PRK06270 13 VGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLEVIR---SVD 89 (341)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHHHhh---ccC
Confidence 58888888753 2 6899998774321 112111 00 0001 1111 1235555553 235
Q ss_pred CCEEEEECCCh-----HHHHHHHHHHHhcCCCeEEecCCCC---HHHHHHHHHccCCcEEEccchhHHHHHHHHH
Q 024671 58 PNMIVVDYTVP-----AAVNGNAELYSKVGVPFVMGTTGGD---RVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (264)
Q Consensus 58 ~d~VvIDFS~p-----~~~~~~~~~~~~~g~plViGTTG~~---~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~ 124 (264)
+| ||||-|-+ +...+++..|+++|+++|+++++.. .+++.+++++.+..+.+.++..-|.-++..+
T Consensus 90 ~D-vVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii~~l 163 (341)
T PRK06270 90 AD-VVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAMPIINLA 163 (341)
T ss_pred CC-EEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHHHHH
Confidence 78 89997754 3468999999999999999988764 3466667777777788877666676665543
No 14
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.08 E-value=0.051 Score=49.86 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=66.9
Q ss_pred ChHHHHHHHHh---CCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADA---AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~---~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
||+.|++.+.. .+++|++..++.+.. .....+. .++ ..++++.+ ...|| +||+-.+|+++.++...
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~---~~~~~~~-~~~--~~~l~~ll----~~~~D-lVVE~A~~~av~e~~~~ 81 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADL---PPALAGR-VAL--LDGLPGLL----AWRPD-LVVEAAGQQAIAEHAEG 81 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHH---HHHhhcc-Ccc--cCCHHHHh----hcCCC-EEEECCCHHHHHHHHHH
Confidence 68889988763 348898875543211 0011111 222 24555433 24799 89999999999999999
Q ss_pred HHhcCCCeEEecCC-CCH-H---HHHHHHHccCCcEEEccchhHHH
Q 024671 78 YSKVGVPFVMGTTG-GDR-V---RLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 78 ~~~~g~plViGTTG-~~~-~---~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
+++.|+.+|+..+| |.+ + ++.+.+++.+.. +|-|.=.||-
T Consensus 82 iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~-i~ipSGAigG 126 (267)
T PRK13301 82 CLTAGLDMIICSAGALADDALRARLIAAAEAGGAR-IRVPAGAIAG 126 (267)
T ss_pred HHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCE-EEEeChHHHh
Confidence 99999999999999 443 2 233344443334 4445555553
No 15
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.95 E-value=0.068 Score=48.84 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=72.6
Q ss_pred ChHHHHHHHHh--CCCeEEEEEcCCCccccccccccCcee-EeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADA--AGLELVPVSFGTEEESGQKVEVCGKEI-QVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~--~~~eLv~~~~~~~~~~g~~~~~~~~~i-~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
||+.+++.+.+ ++++|++..++.+... +.. ....+. .. ..++++.++ .+| +|+..+.++...+....
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~-a~~~g~~~~--~~~~eell~-----~~D-~Vvi~tp~~~h~e~~~~ 86 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADF-IWGLRRPPP--VVPLDQLAT-----HAD-IVVEAAPASVLRAIVEP 86 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHH-HHhcCCCcc--cCCHHHHhc-----CCC-EEEECCCcHHHHHHHHH
Confidence 68888888763 6899998777543211 111 001111 11 134554432 578 79999999999999999
Q ss_pred HHhcCCCeEEecCC-C-CHHHHHHHHHccCCcEEEccchhHHHH
Q 024671 78 YSKVGVPFVMGTTG-G-DRVRLHETIENSNVYAVISPQMGKQVV 119 (264)
Q Consensus 78 ~~~~g~plViGTTG-~-~~~~~~~l~~~~~~~~v~s~NfSlGv~ 119 (264)
++++|+++++-.+| + ..+++.+.+++.+.++.+.|.|--|..
T Consensus 87 aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~d 130 (271)
T PRK13302 87 VLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGLD 130 (271)
T ss_pred HHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhHH
Confidence 99999999998777 3 234566667777788777777776653
No 16
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.67 E-value=0.49 Score=37.69 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=58.9
Q ss_pred hHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhc
Q 024671 2 GKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKV 81 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~ 81 (264)
|+.+.+.+.+.|+++.+. ..... .+ .|++.+. +++ +. ...+| +++=|+.|+.+.+.++.|.+.
T Consensus 16 g~~v~~~l~~~G~~v~~V-np~~~----~i----~G~~~y~--sl~----e~-p~~iD-lavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPV-NPKGG----EI----LGIKCYP--SLA----EI-PEPID-LAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp HHHHHHHHHHTT-EEEEE-STTCS----EE----TTEE-BS--SGG----GC-SST-S-EEEE-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEE-CCCce----EE----CcEEeec--ccc----CC-CCCCC-EEEEEcCHHHHHHHHHHHHHc
Confidence 677888887888898865 32211 11 1344442 322 21 24678 788899999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 82 GVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 82 g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
|+.-|+-.+|-..+++.+++++.++. ++.|| ++|+
T Consensus 79 g~~~v~~~~g~~~~~~~~~a~~~gi~-vigp~-C~gv 113 (116)
T PF13380_consen 79 GVKAVWLQPGAESEELIEAAREAGIR-VIGPN-CLGV 113 (116)
T ss_dssp T-SEEEE-TTS--HHHHHHHHHTT-E-EEESS--HHH
T ss_pred CCCEEEEEcchHHHHHHHHHHHcCCE-EEeCC-cceE
Confidence 99999999996666777777765554 44555 4444
No 17
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.55 E-value=0.26 Score=44.38 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=70.5
Q ss_pred ChHHHHHHHHh--CCCeEEEEEcCCCcccccc-ccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADA--AGLELVPVSFGTEEESGQK-VEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~--~~~eLv~~~~~~~~~~g~~-~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
.|+.|.+.+.+ .++|+++..|+.....-.. ....... .+++.+.+ ..+| ++|+-.+|+++.+++..
T Consensus 11 IG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~-----~s~ide~~-----~~~D-lvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 11 IGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRC-----VSDIDELI-----AEVD-LVVEAASPEAVREYVPK 79 (255)
T ss_pred HHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCc-----cccHHHHh-----hccc-eeeeeCCHHHHHHHhHH
Confidence 37888888873 4799998877543211100 0111111 13444433 3678 89999999999999999
Q ss_pred HHhcCCCeEEecCC-CCHHH-HHHHHHccC-CcE-EEccchhHHH
Q 024671 78 YSKVGVPFVMGTTG-GDRVR-LHETIENSN-VYA-VISPQMGKQV 118 (264)
Q Consensus 78 ~~~~g~plViGTTG-~~~~~-~~~l~~~~~-~~~-v~s~NfSlGv 118 (264)
++++|+++++=.+| |.++. .+.+.+.++ .+. ++-|.=.+|-
T Consensus 80 ~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGG 124 (255)
T COG1712 80 ILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGG 124 (255)
T ss_pred HHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchh
Confidence 99999999999999 55444 344544444 333 7777767774
No 18
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=94.24 E-value=0.38 Score=45.39 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=80.7
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCC-ccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTE-EESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~-~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
||+.+++.+. .+++||+++++..+ ...+.. ++++...|.++.+ ..+| |++=.+-+..-.+.+..+
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~-------~~v~~~~d~~e~l-----~~iD-VViIctPs~th~~~~~~~ 80 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLDTE-------TPVYAVADDEKHL-----DDVD-VLILCMGSATDIPEQAPY 80 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhc-------CCccccCCHHHhc-----cCCC-EEEEcCCCccCHHHHHHH
Confidence 6899988887 58999999887653 222211 2233333433332 3588 455445444557778888
Q ss_pred HhcCCCeEEecCCCC--HH---HHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCC--EEEEeecCCCC
Q 024671 79 SKVGVPFVMGTTGGD--RV---RLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYS--LQVLESHQAGK 151 (264)
Q Consensus 79 ~~~g~plViGTTG~~--~~---~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~d--ieI~E~HH~~K 151 (264)
++.|+++|.--.=+. ++ .+.+.|++.+...+++.=.-=|..-+.++... ..+|.. ..|. =.-+..+|..=
T Consensus 81 L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~e--a~lp~g-~~yt~wG~g~s~ghs~a 157 (324)
T TIGR01921 81 FAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGE--AVLPKG-QTYTFWGPGLSQGHSDA 157 (324)
T ss_pred HHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHh--ccCCCC-cceeccCCCcCchhhhh
Confidence 999999998632111 22 34445555444456664444444444454422 345521 2222 24567789888
Q ss_pred CCC-cHH
Q 024671 152 LDT-SGT 157 (264)
Q Consensus 152 ~Da-SGT 157 (264)
.|+ .|-
T Consensus 158 ~~~~~Gv 164 (324)
T TIGR01921 158 VRRIDGV 164 (324)
T ss_pred hcccCCc
Confidence 888 885
No 19
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.12 E-value=0.48 Score=43.86 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=62.3
Q ss_pred hHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcC-CCCEEEEECCChHHHHHHHHHHHh
Q 024671 2 GKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK-YPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~-~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
|+.+.+...+.|..++..+.+... +..+ .|++.+. ++++. ... .+| ++|=+..++.+.+.++.|.+
T Consensus 19 ~~~~~~~~~~~g~~~v~~V~p~~~--~~~v----~G~~~y~--sv~dl----p~~~~~D-lavi~vpa~~v~~~l~e~~~ 85 (286)
T TIGR01019 19 GSFHTEQMLAYGTNIVGGVTPGKG--GTTV----LGLPVFD--SVKEA----VEETGAN-ASVIFVPAPFAADAIFEAID 85 (286)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCC--ccee----cCeeccC--CHHHH----hhccCCC-EEEEecCHHHHHHHHHHHHH
Confidence 566666666778777776654310 0111 1455553 33332 222 278 78888999999999999999
Q ss_pred cCCC-eEEecCCCCHHHHHHHHHccC-Cc-EEEccc
Q 024671 81 VGVP-FVMGTTGGDRVRLHETIENSN-VY-AVISPQ 113 (264)
Q Consensus 81 ~g~p-lViGTTG~~~~~~~~l~~~~~-~~-~v~s~N 113 (264)
.|++ +||=|.||.+...+++.+.++ .. -++-||
T Consensus 86 ~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 86 AGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 9986 568899997653344444333 33 367787
No 20
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=93.08 E-value=0.87 Score=42.50 Aligned_cols=103 Identities=15% Similarity=0.063 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcC
Q 024671 3 KAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVG 82 (264)
Q Consensus 3 ~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g 82 (264)
+...+...+.|-.+++++..... +..+ .|++.+. +++++-+. ..+| ++|=+.-++.+.+.++.|.+.|
T Consensus 26 ~~~~~~~~~ygt~~~~gV~p~~~--~~~i----~G~~~y~--sv~dlp~~---~~~D-lAvI~vPa~~v~~al~e~~~~G 93 (300)
T PLN00125 26 TFHTEQAIEYGTKMVGGVTPKKG--GTEH----LGLPVFN--TVAEAKAE---TKAN-ASVIYVPPPFAAAAILEAMEAE 93 (300)
T ss_pred HHHHHHHHHhCCcEEEEECCCCC--CceE----cCeeccC--CHHHHhhc---cCCC-EEEEecCHHHHHHHHHHHHHcC
Confidence 34444555789999998874420 0111 2466663 44433210 1368 7888999999999999999999
Q ss_pred CC-eEEecCCCCHHHH-HHHHHccC-CcE-EEccchhHHH
Q 024671 83 VP-FVMGTTGGDRVRL-HETIENSN-VYA-VISPQMGKQV 118 (264)
Q Consensus 83 ~p-lViGTTG~~~~~~-~~l~~~~~-~~~-v~s~NfSlGv 118 (264)
++ +||-|.||.+..+ +.+.+.++ ..+ |+-|| |+|+
T Consensus 94 vk~~vIisaGf~e~g~~~~~~~~ar~~girviGPN-c~Gi 132 (300)
T PLN00125 94 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPN-CPGI 132 (300)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCC-Ccee
Confidence 98 7788999976533 33333233 444 78888 4443
No 21
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=92.95 E-value=0.86 Score=40.83 Aligned_cols=99 Identities=23% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC-
Q 024671 13 GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG- 91 (264)
Q Consensus 13 ~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG- 91 (264)
+.+|++..+...... +.+ ....+++++ .|+++.++ ..+| +|+.-|.+.+..++...|+++|+++++-.+|
T Consensus 1 ~~eLvaV~D~~~e~a-~~~-a~~~g~~~~--~d~~eLl~----~~vD-aVviatp~~~H~e~a~~aL~aGkhVl~~s~gA 71 (229)
T TIGR03855 1 NFEIAAVYDRNPKDA-KEL-AERCGAKIV--SDFDEFLP----EDVD-IVVEAASQEAVKEYAEKILKNGKDLLIMSVGA 71 (229)
T ss_pred CeEEEEEECCCHHHH-HHH-HHHhCCceE--CCHHHHhc----CCCC-EEEECCChHHHHHHHHHHHHCCCCEEEECCcc
Confidence 467888776543210 111 011123343 35555443 3588 8999999999999999999999999998887
Q ss_pred C-CHH---HHHHHHHccCCcEEEccchhHHHHH
Q 024671 92 G-DRV---RLHETIENSNVYAVISPQMGKQVVA 120 (264)
Q Consensus 92 ~-~~~---~~~~l~~~~~~~~v~s~NfSlGv~l 120 (264)
+ +.+ ++.+.+++++..+.+.|.+--|...
T Consensus 72 lad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~ 104 (229)
T TIGR03855 72 LADRELRERLREVARSSGRKVYIPSGAIGGLDA 104 (229)
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHH
Confidence 4 333 3455566677888888866655533
No 22
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=92.89 E-value=0.31 Score=45.25 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=54.9
Q ss_pred hHHHHHHHH-hCCCeEEEEEcCCCccccccc----cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHH
Q 024671 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKV----EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 2 G~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~----~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (264)
|...++.+. +++++||++++.++...|+|+ +....++.. .++++..++. .+|+++.+--.|+ .+-.+
T Consensus 14 Gv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a--~~~~~avlAt----l~~~~~y~~~~~~--~~~y~ 85 (350)
T COG3804 14 GVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIA--TNSIDAVLAT----LADAVIYAPLLPS--VDEYA 85 (350)
T ss_pred HHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEe--ecccccceec----cccceeeecccch--HHHHH
Confidence 666677775 789999999997776778886 334434444 4566655543 3444778887885 66677
Q ss_pred HHHhcCCCeEE
Q 024671 77 LYSKVGVPFVM 87 (264)
Q Consensus 77 ~~~~~g~plVi 87 (264)
.|+..|+++|.
T Consensus 86 rlL~aGiNVv~ 96 (350)
T COG3804 86 RLLRAGINVVT 96 (350)
T ss_pred HHHHcCCceec
Confidence 88999999885
No 23
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=92.51 E-value=1.3 Score=41.17 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=60.1
Q ss_pred hHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcC-CCCEEEEECCChHHHHHHHHHHHh
Q 024671 2 GKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK-YPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~-~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
|+.+.+.+.+.+.+.+..+.+.. .. ..+ .|++.+. ++++ +.+. .+| ++|=+.-++.+.+.++.|.+
T Consensus 21 g~~~l~~l~~~g~~~v~pVnp~~-~~-~~v----~G~~~y~--sv~d----lp~~~~~D-lAvi~vp~~~v~~~l~e~~~ 87 (291)
T PRK05678 21 GTFHTEQMLAYGTNIVGGVTPGK-GG-TTV----LGLPVFN--TVAE----AVEATGAN-ASVIYVPPPFAADAILEAID 87 (291)
T ss_pred HHHHHHHHHHCCCCEEEEECCCC-CC-CeE----eCeeccC--CHHH----HhhccCCC-EEEEEcCHHHHHHHHHHHHH
Confidence 56667666666665443344320 00 000 1455553 3333 2221 278 67888899999999999999
Q ss_pred cCCCe-EEecCCCCHHHHHHHHHccC-Cc-EEEccc
Q 024671 81 VGVPF-VMGTTGGDRVRLHETIENSN-VY-AVISPQ 113 (264)
Q Consensus 81 ~g~pl-ViGTTG~~~~~~~~l~~~~~-~~-~v~s~N 113 (264)
.|++. ||=|.||..++.+++.+.++ .. -++-||
T Consensus 88 ~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPN 123 (291)
T PRK05678 88 AGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPN 123 (291)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 99875 78899998654334444333 44 378888
No 24
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.44 E-value=0.36 Score=37.45 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=63.9
Q ss_pred hHHHHHHHH-h-CCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 2 GKAVIKAAD-A-AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 2 G~~i~~~~~-~-~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
|+.-...+. . +++++++..+..+... +.. ....+++.+ .|+++.++. ..+| +++-.|.+..=.+.+..|+
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~-~~~~~~~~~--~~~~~ll~~---~~~D-~V~I~tp~~~h~~~~~~~l 83 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERA-EAF-AEKYGIPVY--TDLEELLAD---EDVD-AVIIATPPSSHAEIAKKAL 83 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHH-HHH-HHHTTSEEE--SSHHHHHHH---TTES-EEEEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHH-HHHhcccch--hHHHHHHHh---hcCC-EEEEecCCcchHHHHHHHH
Confidence 555565555 4 7899999887554211 110 111244554 467766653 3688 7999999999999999999
Q ss_pred hcCCCeEEecCC-CCHHHHHHH---HHccCCcE
Q 024671 80 KVGVPFVMGTTG-GDRVRLHET---IENSNVYA 108 (264)
Q Consensus 80 ~~g~plViGTTG-~~~~~~~~l---~~~~~~~~ 108 (264)
+.|+++++=-.- .+.++.+++ ++..+..+
T Consensus 84 ~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 84 EAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 999988886543 355555554 44445443
No 25
>PRK06349 homoserine dehydrogenase; Provisional
Probab=91.77 E-value=0.98 Score=43.93 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=65.8
Q ss_pred ChHHHHHHHH-h---------CCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCCh-H
Q 024671 1 MGKAVIKAAD-A---------AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-A 69 (264)
Q Consensus 1 MG~~i~~~~~-~---------~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p-~ 69 (264)
||+.+++.+. + .+++|+++.++..... ..... .+..++ +|.++.++ +...| ||||-|.+ +
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~~~~--~~~~~~--~d~~~ll~---d~~iD-vVve~tg~~~ 84 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RGVDL--PGILLT--TDPEELVN---DPDID-IVVELMGGIE 84 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cCCCC--ccccee--CCHHHHhh---CCCCC-EEEECCCCch
Confidence 4777776663 2 2688998877543211 11111 112222 45555553 23567 89999754 5
Q ss_pred HHHHHHHHHHhcCCCeEEecCCCCH---HHHHHHHHccCCcEEEccchhHHH
Q 024671 70 AVNGNAELYSKVGVPFVMGTTGGDR---VRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 70 ~~~~~~~~~~~~g~plViGTTG~~~---~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
...+++..|+++|+++|+.--++.. +++.++++++++.+.|.+...-|.
T Consensus 85 ~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggi 136 (426)
T PRK06349 85 PARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGI 136 (426)
T ss_pred HHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccC
Confidence 6689999999999999986444433 356666777777777765444443
No 26
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.97 E-value=1.8 Score=41.91 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=76.4
Q ss_pred hHHHHHHHHhCC-CeEEEEEcCCCcccccccccc--Cc---eeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHH
Q 024671 2 GKAVIKAADAAG-LELVPVSFGTEEESGQKVEVC--GK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNA 75 (264)
Q Consensus 2 G~~i~~~~~~~~-~eLv~~~~~~~~~~g~~~~~~--~~---~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~ 75 (264)
|+.++..+.+++ .++..+ +++.....+..... .. .+++...+.+.++|. ..| +||.---|......+
T Consensus 13 g~~va~~la~~~d~~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~-----~~d-~VIn~~p~~~~~~i~ 85 (389)
T COG1748 13 GSVVAHKLAQNGDGEVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALIK-----DFD-LVINAAPPFVDLTIL 85 (389)
T ss_pred HHHHHHHHHhCCCceEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHHh-----cCC-EEEEeCCchhhHHHH
Confidence 788888877544 777644 33321111111110 11 233333333334443 358 899999999999999
Q ss_pred HHHHhcCCCeEEecCCCCH-HHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcC
Q 024671 76 ELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP 133 (264)
Q Consensus 76 ~~~~~~g~plViGTTG~~~-~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~ 133 (264)
+.|+++|+++|-=+=.-.. -+++..++++++.++...=|+=|+.-+ +++.+++.+.
T Consensus 86 ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv--~a~~a~~~~~ 142 (389)
T COG1748 86 KACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNV--LAAYAAKELF 142 (389)
T ss_pred HHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHH--HHHHHHHHhh
Confidence 9999999999874432222 246667778888899999999995432 3456666664
No 27
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=90.59 E-value=3.8 Score=38.62 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=63.5
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcC
Q 024671 3 KAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVG 82 (264)
Q Consensus 3 ~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g 82 (264)
+.-.+...+.|-.+|+++.+.. -|+.+. ..|+|+++ +++++.+. ..+| +.|=|.-|..+.+.+..|.+.|
T Consensus 43 ~~h~~~~~~ygt~iv~GV~Pgk--gg~~v~--~~Gvpvy~--sv~ea~~~---~~~D-~avI~VPa~~v~dai~Ea~~aG 112 (317)
T PTZ00187 43 TFHTEQAIEYGTKMVGGVNPKK--AGTTHL--KHGLPVFA--TVKEAKKA---TGAD-ASVIYVPPPHAASAIIEAIEAE 112 (317)
T ss_pred HHHHHHHHHhCCcEEEEECCCC--CCceEe--cCCccccC--CHHHHhcc---cCCC-EEEEecCHHHHHHHHHHHHHcC
Confidence 3344455578999999987432 122211 01567764 55544321 2378 7888999999999999999999
Q ss_pred CCe-EEecCCCCHHHHHHHH---HccCCcEEEccc
Q 024671 83 VPF-VMGTTGGDRVRLHETI---ENSNVYAVISPQ 113 (264)
Q Consensus 83 ~pl-ViGTTG~~~~~~~~l~---~~~~~~~v~s~N 113 (264)
+++ ||=|-||.+.+..++. +...-..++-||
T Consensus 113 I~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPN 147 (317)
T PTZ00187 113 IPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPN 147 (317)
T ss_pred CCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCC
Confidence 997 5557778765433332 211233577888
No 28
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=90.57 E-value=0.52 Score=44.65 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=63.6
Q ss_pred ChHHHHHHHHh-CCC-eEEEEEcCCCccccccc---cccCc-eeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHH
Q 024671 1 MGKAVIKAADA-AGL-ELVPVSFGTEEESGQKV---EVCGK-EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN 74 (264)
Q Consensus 1 MG~~i~~~~~~-~~~-eLv~~~~~~~~~~g~~~---~~~~~-~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~ 74 (264)
||+.+++.+.+ .++ +++.+ ++......... ..... .+.++. .|.++ |.++.. ..| |||+..-|......
T Consensus 9 vG~~~~~~L~~~~~~~~v~va-~r~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~-l~~~~~-~~d-vVin~~gp~~~~~v 83 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVA-DRNPEKAERLAEKLLGDRVEAVQVDV-NDPES-LAELLR-GCD-VVINCAGPFFGEPV 83 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEE-ESSHHHHHHHHT--TTTTEEEEE--T-TTHHH-HHHHHT-TSS-EEEE-SSGGGHHHH
T ss_pred HHHHHHHHHhcCCCCCcEEEE-ECCHHHHHHHHhhccccceeEEEEec-CCHHH-HHHHHh-cCC-EEEECCccchhHHH
Confidence 68999998874 455 55532 33221110010 00111 123322 23333 344332 568 89999999999999
Q ss_pred HHHHHhcCCCeEEecCCC-CHH--HHHHHHHccCCcEEEccchhHHHH
Q 024671 75 AELYSKVGVPFVMGTTGG-DRV--RLHETIENSNVYAVISPQMGKQVV 119 (264)
Q Consensus 75 ~~~~~~~g~plViGTTG~-~~~--~~~~l~~~~~~~~v~s~NfSlGv~ 119 (264)
++.|++.|++.|- |.+ .+. ++.+.++++++.+|.+.=|.=|..
T Consensus 84 ~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 84 ARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp HHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred HHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 9999999999999 444 332 344556667788888888887743
No 29
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=89.92 E-value=1.7 Score=40.72 Aligned_cols=112 Identities=18% Similarity=0.077 Sum_probs=69.9
Q ss_pred hHHHHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 2 G~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
|+.....+. .+++++++.++..+...+... ....|++.. .++.++.++.......| +++|.|.+..-.++...+.+
T Consensus 16 Gt~hm~~l~~~~~velvAVvdid~es~gla~-A~~~Gi~~~-~~~ie~LL~~~~~~dID-iVf~AT~a~~H~e~a~~a~e 92 (302)
T PRK08300 16 GTDLMIKILRSEHLEPGAMVGIDPESDGLAR-ARRLGVATS-AEGIDGLLAMPEFDDID-IVFDATSAGAHVRHAAKLRE 92 (302)
T ss_pred HHHHHHHHhcCCCcEEEEEEeCChhhHHHHH-HHHcCCCcc-cCCHHHHHhCcCCCCCC-EEEECCCHHHHHHHHHHHHH
Confidence 555555555 578999988764332122111 112244442 14566666421113467 79999999999999999999
Q ss_pred cCCCeEEecCCCC-----HH-HHHHHHHccCCcEEEccchhH
Q 024671 81 VGVPFVMGTTGGD-----RV-RLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 81 ~g~plViGTTG~~-----~~-~~~~l~~~~~~~~v~s~NfSl 116 (264)
.|+.++.=|.=+. ++ ..+.+.+..+..++-+||=+.
T Consensus 93 aGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 93 AGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred cCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 9999888775541 11 233445555678899999665
No 30
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=89.89 E-value=3.2 Score=37.79 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=46.7
Q ss_pred hHHHHHHHHhCCCeEEEEEcCCCccccccc-cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHH---HHHHHHH
Q 024671 2 GKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAA---VNGNAEL 77 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~~~~~~g~~~-~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~---~~~~~~~ 77 (264)
|+.+++.+.+.|+++++-+...... ..+ ..+...+-... -|.++..+-+.+..+| +|||.|||=+ .....+.
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~--~~~~~~g~~~v~~g~-l~~~~l~~~l~~~~i~-~VIDAtHPfA~~is~~a~~a 87 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGK--HLYPIHQALTVHTGA-LDPQELREFLKRHSID-ILVDATHPFAAQITTNATAV 87 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCcc--ccccccCCceEEECC-CCHHHHHHHHHhcCCC-EEEEcCCHHHHHHHHHHHHH
Confidence 7888888877889888654432110 001 01111111111 1222211222345688 8999999954 5667778
Q ss_pred HHhcCCCeEEe
Q 024671 78 YSKVGVPFVMG 88 (264)
Q Consensus 78 ~~~~g~plViG 88 (264)
|.+.|+|.+==
T Consensus 88 ~~~~~ipylR~ 98 (256)
T TIGR00715 88 CKELGIPYVRF 98 (256)
T ss_pred HHHhCCcEEEE
Confidence 88899998763
No 31
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.55 E-value=2.9 Score=31.80 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=52.5
Q ss_pred hHHHHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 2 G~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
|+++..... ..++.++++.+..++..|+.+. ++|++. +++++.+.. ++| +.|=+.-++.+.+.+..+++
T Consensus 15 G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~----gipV~~--~~~~l~~~~---~i~-iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 15 GRALLYNGFSMRGFGIVAVFDVDPEKIGKEIG----GIPVYG--SMDELEEFI---EID-IAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHHHCECEEEEEEECTTTTTSEET----TEEEES--SHHHHHHHC---TTS-EEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHcCCCCEEEEEcCCCccCcEEC----CEEeec--cHHHhhhhh---CCC-EEEEEcCHHHHHHHHHHHHH
Confidence 667773334 5789999888866656665542 588883 344433322 378 67778888999999999999
Q ss_pred cCCCeEEe
Q 024671 81 VGVPFVMG 88 (264)
Q Consensus 81 ~g~plViG 88 (264)
.|++.|+-
T Consensus 85 ~gIk~i~n 92 (96)
T PF02629_consen 85 AGIKGIVN 92 (96)
T ss_dssp TT-SEEEE
T ss_pred cCCCEEEE
Confidence 99987764
No 32
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.85 E-value=0.41 Score=37.58 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=56.6
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcc--ccccccccCceeEeecCCchhhHHhhhhcC-CCCEEEEECCC-hHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEE--SGQKVEVCGKEIQVHGLSDRESVLASVFDK-YPNMIVVDYTV-PAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~--~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~-~~d~VvIDFS~-p~~~~~~~~ 76 (264)
+|...++.++..|.++++. ++.+.. .-+..+. ..+--+...|+.+.+.++... .+| ++||++. ++.+...++
T Consensus 2 vG~~a~q~ak~~G~~vi~~-~~~~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d-~vid~~g~~~~~~~~~~ 77 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIAT-DRSEEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVD-VVIDCVGSGDTLQEAIK 77 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEE-ESSHHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEE-EEEESSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEE-ECCHHHHHHHHhhcc--cccccccccccccccccccccccce-EEEEecCcHHHHHHHHH
Confidence 4888898888888887754 433211 1111111 112122223345555555433 578 8999998 999999999
Q ss_pred HHHhcCCCeEEecCC
Q 024671 77 LYSKVGVPFVMGTTG 91 (264)
Q Consensus 77 ~~~~~g~plViGTTG 91 (264)
.+.+.|.-+++|.++
T Consensus 78 ~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 78 LLRPGGRIVVVGVYG 92 (130)
T ss_dssp HEEEEEEEEEESSTS
T ss_pred HhccCCEEEEEEccC
Confidence 999999999999998
No 33
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=86.90 E-value=6.9 Score=36.26 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=67.4
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
||+.....+. .+++++++..+..+...+... ....|++... ++.++.+.+ ...| +|+|.|.+..-.++...|.
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~-A~~~Gi~~~~-~~~e~ll~~---~dID-aV~iaTp~~~H~e~a~~al 85 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR-ARELGVKTSA-EGVDGLLAN---PDID-IVFDATSAKAHARHARLLA 85 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH-HHHCCCCEEE-CCHHHHhcC---CCCC-EEEECCCcHHHHHHHHHHH
Confidence 4666655555 688999988764432222111 1112344331 355555532 3467 7999999999999999999
Q ss_pred hcCCCeEEecCCCC-----H-HHHHHHHHccCCcEEEccchh
Q 024671 80 KVGVPFVMGTTGGD-----R-VRLHETIENSNVYAVISPQMG 115 (264)
Q Consensus 80 ~~g~plViGTTG~~-----~-~~~~~l~~~~~~~~v~s~NfS 115 (264)
+.|+++++=|.=+. + -..+++.+..++.++-++|-+
T Consensus 86 ~aGk~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~a 127 (285)
T TIGR03215 86 ELGKIVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQA 127 (285)
T ss_pred HcCCEEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHH
Confidence 99999877554431 1 123444444557788888877
No 34
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=86.80 E-value=6.5 Score=35.63 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=45.4
Q ss_pred hHHHHHHHHhCCCeEEEEEcCCCccc---cccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCCh---HHHHHHH
Q 024671 2 GKAVIKAADAAGLELVPVSFGTEEES---GQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP---AAVNGNA 75 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~~~~~~---g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p---~~~~~~~ 75 (264)
|+.+++.+.+.|..+..-+....+.. +..+-.++.+ +.++++..+ .+...+ .|||-||| +......
T Consensus 14 gr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~----~~~~l~~~l---~~~~i~-~VIDATHPfA~~is~~a~ 85 (248)
T PRK08057 14 ARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFG----GAEGLAAYL---REEGID-LVIDATHPYAAQISANAA 85 (248)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCC----CHHHHHHHH---HHCCCC-EEEECCCccHHHHHHHHH
Confidence 67888887767887765444222111 1111111110 123344333 345678 89999999 4456677
Q ss_pred HHHHhcCCCeEE
Q 024671 76 ELYSKVGVPFVM 87 (264)
Q Consensus 76 ~~~~~~g~plVi 87 (264)
+.|.+.|+|.+=
T Consensus 86 ~ac~~~~ipyiR 97 (248)
T PRK08057 86 AACRALGIPYLR 97 (248)
T ss_pred HHHHHhCCcEEE
Confidence 788889999875
No 35
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=86.67 E-value=8.1 Score=41.98 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=70.0
Q ss_pred ChHHHHHHHH-hCCCe------------EEEEEcCCCccccccc-cccCc-eeEeecCCchhhHHhhhhcCCCCEEEEEC
Q 024671 1 MGKAVIKAAD-AAGLE------------LVPVSFGTEEESGQKV-EVCGK-EIQVHGLSDRESVLASVFDKYPNMIVVDY 65 (264)
Q Consensus 1 MG~~i~~~~~-~~~~e------------Lv~~~~~~~~~~g~~~-~~~~~-~i~i~~~~dl~~~l~~~~~~~~d~VvIDF 65 (264)
||+.+++.+. .++.+ +|.+.+......-+-. ...+. .+.++. .|.++..+.+ ..+| +||--
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv-~D~e~L~~~v--~~~D-aVIsa 655 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDV-SDSESLLKYV--SQVD-VVISL 655 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeec-CCHHHHHHhh--cCCC-EEEEC
Confidence 5788888886 45655 4554443221110000 11111 234432 3444433222 2488 78998
Q ss_pred CChHHHHHHHHHHHhcCCCeEEecCCCCHHHHH---HHHHccCCcEEEccchhHHHHH
Q 024671 66 TVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLH---ETIENSNVYAVISPQMGKQVVA 120 (264)
Q Consensus 66 S~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~---~l~~~~~~~~v~s~NfSlGv~l 120 (264)
+-+..-...++.|+++|+++|+-+ ++.++.+ +.++.++++++...+|.=|+--
T Consensus 656 lP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~ 711 (1042)
T PLN02819 656 LPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDH 711 (1042)
T ss_pred CCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHH
Confidence 888888999999999999998765 6655444 4556677888888889888754
No 36
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=86.39 E-value=6.4 Score=37.52 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=53.5
Q ss_pred hHHhhhhcCCCCEEEEECC---ChHHHHHHHHHHHhcCCCeEEecCCCC--HHHHHHHHHccCCcEEEccch-h-HHHHH
Q 024671 48 SVLASVFDKYPNMIVVDYT---VPAAVNGNAELYSKVGVPFVMGTTGGD--RVRLHETIENSNVYAVISPQM-G-KQVVA 120 (264)
Q Consensus 48 ~~l~~~~~~~~d~VvIDFS---~p~~~~~~~~~~~~~g~plViGTTG~~--~~~~~~l~~~~~~~~v~s~Nf-S-lGv~l 120 (264)
.+.+.+.+..+| |+|.+= +-+++.-+...|++.|+|.|=||.=+. ..+++++.+..++|++ ---+ | +|..+
T Consensus 114 dv~~~lk~~~~d-VlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P~~ia~~p~~a~~f~e~glPi~-GDD~Ksq~GaTi 191 (351)
T TIGR03450 114 DVVQALKDAKVD-VLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDPEWAKKFTDAGVPIV-GDDIKSQVGATI 191 (351)
T ss_pred HHHHHHHhcCCC-EEEECCccchHHHHHHHHHHHHHcCCceEeccCccccCCHHHHHHHHHCCCCEe-cccccccCCCch
Confidence 344555567899 799974 346777778888899999999997654 3467777777777753 2222 4 67777
Q ss_pred HHHHHHH
Q 024671 121 FLAAMEI 127 (264)
Q Consensus 121 l~~~~~~ 127 (264)
+.+.+..
T Consensus 192 ~h~vLa~ 198 (351)
T TIGR03450 192 THRVLAK 198 (351)
T ss_pred HHHHHHH
Confidence 7765433
No 37
>PRK11579 putative oxidoreductase; Provisional
Probab=85.47 E-value=9.3 Score=35.62 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=63.7
Q ss_pred HHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC
Q 024671 5 VIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV 83 (264)
Q Consensus 5 i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~ 83 (264)
....+. .++++|++..+......... . .+++++ .|+++.+++ ...| +|+-.|-+..=.+.+..|++.|+
T Consensus 20 ~~~~~~~~~~~~l~av~d~~~~~~~~~--~--~~~~~~--~~~~ell~~---~~vD-~V~I~tp~~~H~~~~~~al~aGk 89 (346)
T PRK11579 20 HAPLIAGTPGLELAAVSSSDATKVKAD--W--PTVTVV--SEPQHLFND---PNID-LIVIPTPNDTHFPLAKAALEAGK 89 (346)
T ss_pred HHHHHhhCCCCEEEEEECCCHHHHHhh--C--CCCcee--CCHHHHhcC---CCCC-EEEEcCCcHHHHHHHHHHHHCCC
Confidence 344444 47899999877543211110 0 122333 466666642 3577 67777888888999999999999
Q ss_pred CeEEecC-CCCHHHHHH---HHHccCCcEEEccc--hhHHHHHHHHH
Q 024671 84 PFVMGTT-GGDRVRLHE---TIENSNVYAVISPQ--MGKQVVAFLAA 124 (264)
Q Consensus 84 plViGTT-G~~~~~~~~---l~~~~~~~~v~s~N--fSlGv~ll~~~ 124 (264)
++++==. ..+.++.++ +++++++.+....| |.=...-+.++
T Consensus 90 hVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~ 136 (346)
T PRK11579 90 HVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKAL 136 (346)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHH
Confidence 9886311 234444444 45555566555555 44444444443
No 38
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=85.28 E-value=3.7 Score=35.57 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=34.7
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
++.+....+|.+++..+.|+.+.+.++.|.+.|+|+|.--++
T Consensus 48 i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 48 IEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 444444679977889899999999999999999999996665
No 39
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=84.87 E-value=5.8 Score=31.30 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=53.8
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCccccccccc--c----CceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEV--C----GKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNG 73 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~--~----~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~ 73 (264)
+|+.+++.+. .+.++++..+.+.. ..|+.+.. . ...+.+.. .+.+. + ...| +++..+......+
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----~~~D-vvf~a~~~~~~~~ 81 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSR-SAGKPLSEVFPHPKGFEDLSVED-ADPEE-L-----SDVD-VVFLALPHGASKE 81 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTT-TTTSBHHHTTGGGTTTEEEBEEE-TSGHH-H-----TTES-EEEE-SCHHHHHH
T ss_pred HHHHHHHHHhcCCCccEEEeeeecc-ccCCeeehhccccccccceeEee-cchhH-h-----hcCC-EEEecCchhHHHH
Confidence 4899999997 78999998766443 34544411 1 11233322 12221 2 3578 7999999999999
Q ss_pred HHHHHHhcCCCeEEecCCC
Q 024671 74 NAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 74 ~~~~~~~~g~plViGTTG~ 92 (264)
....+.+.|+++|-=++-|
T Consensus 82 ~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 82 LAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHTTSEEEESSSTT
T ss_pred HHHHHhhCCcEEEeCCHHH
Confidence 9999999999666555444
No 40
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=84.66 E-value=5.7 Score=36.88 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=65.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
||+.-.+...+.|..+|+++.+. .-|..+ .++||++ ..++++.+ ..+| +-|=|-.|..+.+.+..|++
T Consensus 20 ~gtfh~~~~l~yGt~~V~GvtPg--kgG~~~----~g~PVf~--tV~EA~~~---~~a~-~svI~Vp~~~aadai~EAid 87 (293)
T COG0074 20 QGTFHTEQMLAYGTKIVGGVTPG--KGGQTI----LGLPVFN--TVEEAVKE---TGAN-ASVIFVPPPFAADAILEAID 87 (293)
T ss_pred cchHHHHHHHHhCCceeecccCC--CCceEE----cCccHHH--HHHHHHHh---hCCC-EEEEecCcHHHHHHHHHHHh
Confidence 46666666677799889887643 223322 2477774 66777654 3578 67889999999999999999
Q ss_pred cCCCeEEecC-CCCHHHHHHHHHccC--CcEEEccc
Q 024671 81 VGVPFVMGTT-GGDRVRLHETIENSN--VYAVISPQ 113 (264)
Q Consensus 81 ~g~plViGTT-G~~~~~~~~l~~~~~--~~~v~s~N 113 (264)
.++++|+.-| |....++-++.+.++ -..++-||
T Consensus 88 a~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPn 123 (293)
T COG0074 88 AGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPN 123 (293)
T ss_pred CCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEEECCC
Confidence 9999887766 455444333333221 23355555
No 41
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=84.31 E-value=12 Score=33.41 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=68.0
Q ss_pred chhhHHhhhhcCCCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecCCCCHH-----HHHHHHHccCCcEEEccchh---
Q 024671 45 DRESVLASVFDKYPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTTGGDRV-----RLHETIENSNVYAVISPQMG--- 115 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTTG~~~~-----~~~~l~~~~~~~~v~s~NfS--- 115 (264)
+.++.|..+ ..+| ++|.++ +|+.+++..+.|.+.|++.||.-+ |+.+ ++++.++..++-+++.-.|.
T Consensus 41 ~pee~Lp~i--~~~D-l~I~y~lHPDl~~~l~~~~~e~g~kavIvp~-~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~ 116 (217)
T PF02593_consen 41 DPEEYLPKI--PEAD-LLIAYGLHPDLTYELPEIAKEAGVKAVIVPS-ESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLE 116 (217)
T ss_pred ChHHHccCC--CCCC-EEEEeccCchhHHHHHHHHHHcCCCEEEEec-CCCccchHHHHHHHHHhcCceeecCccccccC
Confidence 334445542 3577 899987 999999999999999999988765 4333 77777666554343333332
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCCCCEEEEe---ecCCCCCCC-cHHHHHHHHHHHh
Q 024671 116 -KQVVAFLAAMEIMAEQFPGAFSGYSLQVLE---SHQAGKLDT-SGTAKAVISCFQK 167 (264)
Q Consensus 116 -lGv~ll~~~~~~aa~~l~~~~~~~dieI~E---~HH~~K~Da-SGTAl~l~~~i~~ 167 (264)
-|--.+.+++ ++|+. |.+.|++-+ ..=+=+.+| -|++..+|+.+..
T Consensus 117 ~~~~p~i~~F~----~~fGk--P~~ei~v~~~~I~~V~VlR~aPCGsT~~vAk~l~G 167 (217)
T PF02593_consen 117 ENGNPQIDEFA----EYFGK--PKVEIEVENGKIKDVKVLRSAPCGSTWFVAKRLIG 167 (217)
T ss_pred CCCChhHHHHH----HHhCC--ceEEEEecCCcEEEEEEEecCCCccHHHHHHHhcC
Confidence 1222333443 44642 444444321 111224568 8999988887754
No 42
>PRK06392 homoserine dehydrogenase; Provisional
Probab=84.17 E-value=5.1 Score=37.76 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=49.3
Q ss_pred CCCCEEEEECCC--hH--HHHHHHHHHHhcCCCeEEecCCCC---HHHHHHHHHccCCcEEEccchhHHHHHHH
Q 024671 56 KYPNMIVVDYTV--PA--AVNGNAELYSKVGVPFVMGTTGGD---RVRLHETIENSNVYAVISPQMGKQVVAFL 122 (264)
Q Consensus 56 ~~~d~VvIDFS~--p~--~~~~~~~~~~~~g~plViGTTG~~---~~~~~~l~~~~~~~~v~s~NfSlGv~ll~ 122 (264)
..+| |+||-|. .. -...+++.++++|+.+|..--|.- ..++.+++++.+..+.|.++..=|.-++.
T Consensus 80 ~~~D-VvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~ 152 (326)
T PRK06392 80 IKPD-VIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFS 152 (326)
T ss_pred CCCC-EEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhh
Confidence 4678 8999993 21 257888999999999999876642 34666777777788888888777766555
No 43
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=82.15 E-value=9.5 Score=34.54 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=24.8
Q ss_pred cCCCCEEEEECCCh---HHHHHHHHHHHhcCCCeEE
Q 024671 55 DKYPNMIVVDYTVP---AAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 55 ~~~~d~VvIDFS~p---~~~~~~~~~~~~~g~plVi 87 (264)
+...+ .|||-||| +......+.|.+.|+|++=
T Consensus 64 ~~~i~-~vIDATHPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 64 ENGID-AVIDATHPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred hCCCc-EEEECCCchHHHHHHHHHHHHhhcCcceEE
Confidence 35678 89999999 4456667778889998774
No 44
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=82.12 E-value=13 Score=36.28 Aligned_cols=37 Identities=22% Similarity=0.067 Sum_probs=31.5
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCH
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDR 94 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~ 94 (264)
.+| ++|=|..|+.+.+.++.|.+.|++ +|+=|.||.+
T Consensus 64 ~~D-lavi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e 101 (447)
T TIGR02717 64 PVD-LAVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKE 101 (447)
T ss_pred CCC-EEEEecCHHHHHHHHHHHHhcCCCEEEEECCCccc
Confidence 578 788899999999999999999987 4567888864
No 45
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=81.99 E-value=7.3 Score=33.98 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred ChHHHHHHHH--hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAAD--AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~--~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++... ..|+++++.++..+...+..+ .++++...+++++.+. +..+| ++|=-+.+....+..+.|
T Consensus 95 iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i----~g~~v~~~~~l~~li~---~~~iD-~ViIa~P~~~~~~i~~~l 166 (213)
T PRK05472 95 LGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI----GGIPVYHIDELEEVVK---ENDIE-IGILTVPAEAAQEVADRL 166 (213)
T ss_pred HHHHHHHhhhcccCCcEEEEEEECChhhcCCEe----CCeEEcCHHHHHHHHH---HCCCC-EEEEeCCchhHHHHHHHH
Confidence 4677777543 568999998886443333222 1244544455555443 23578 444444455566778889
Q ss_pred HhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHHHHHH
Q 024671 79 SKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFL 122 (264)
Q Consensus 79 ~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~ 122 (264)
.+.|+..|..=+-+.. .-..-..|-.-|+..+...|.
T Consensus 167 ~~~Gi~~il~~~p~~~-------~v~~~~~v~~~~l~~~l~~l~ 203 (213)
T PRK05472 167 VEAGIKGILNFAPVRL-------SVPEDVIVRNVDLTVELQTLS 203 (213)
T ss_pred HHcCCCEEeecCceee-------cCCCCCEEEEechHHHHHHHH
Confidence 9999877765332211 112355677777777654333
No 46
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.68 E-value=3 Score=34.49 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=17.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEc
Q 024671 1 MGKAVIKAADAAGLELVPVSF 21 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~ 21 (264)
+|+.+++.+.++++++.+.+-
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R 30 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVR 30 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEec
Confidence 489999999988899997543
No 47
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=81.20 E-value=6.9 Score=37.07 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=55.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCC-C-cc----------cc----------ccccccCceeEeecCCchhhHHhhhhcCC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGT-E-EE----------SG----------QKVEVCGKEIQVHGLSDRESVLASVFDKY 57 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~-~-~~----------~g----------~~~~~~~~~i~i~~~~dl~~~l~~~~~~~ 57 (264)
|||.+.+.+. +++++|+++.+.. + +. -| +.+.+.+..+.+....++++ +.-..
T Consensus 13 iGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~~----~~w~g 88 (334)
T PRK08955 13 IGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIAD----TDWSG 88 (334)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChhh----CCccC
Confidence 8999999987 5789999887621 1 00 11 11223344566664334332 12236
Q ss_pred CCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
.| ++|+.|-.....+.....++.|...|+=+
T Consensus 89 vD-iVle~tG~~~s~~~a~~hl~aGak~V~iS 119 (334)
T PRK08955 89 CD-VVIEASGVMKTKALLQAYLDQGVKRVVVT 119 (334)
T ss_pred CC-EEEEccchhhcHHHHHHHHHCCCEEEEEC
Confidence 78 89999999999999999999997766654
No 48
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=81.18 E-value=28 Score=30.08 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=27.3
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
+..+....+|.+++.-..+....+.++.+.+.|+|+|.--
T Consensus 48 l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~ 87 (273)
T cd06305 48 IDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFD 87 (273)
T ss_pred HHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEec
Confidence 3333445789655654556666777888999999987654
No 49
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=81.12 E-value=8 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=41.9
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChH-HHHHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchh
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPA-AVNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMG 115 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~-~~~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfS 115 (264)
++.++++..+....||.+++|+..|. ...+.++...+ ..+|+|+=|+=-+........ .++..-++.-+++
T Consensus 30 ~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 30 SSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL-RAGADDYLSKPFS 103 (112)
T ss_dssp SSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH-HTTESEEEESSSS
T ss_pred CCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHH-HCCCCEEEECCCC
Confidence 45556666666678998899988775 33444444444 457777777555555555444 3454333333333
No 50
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=80.93 E-value=12 Score=34.21 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=26.6
Q ss_pred cCCCCEEEEECCCh---HHHHHHHHHHHhcCCCeEE
Q 024671 55 DKYPNMIVVDYTVP---AAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 55 ~~~~d~VvIDFS~p---~~~~~~~~~~~~~g~plVi 87 (264)
+...| ++||-||| ......++.|.+.|+|.+-
T Consensus 64 e~~i~-llIDATHPyAa~iS~Na~~aake~gipy~r 98 (257)
T COG2099 64 EEGID-LLIDATHPYAARISQNAARAAKETGIPYLR 98 (257)
T ss_pred HcCCC-EEEECCChHHHHHHHHHHHHHHHhCCcEEE
Confidence 45678 89999999 4457889999999999875
No 51
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=80.13 E-value=25 Score=31.00 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=49.9
Q ss_pred HHhhhhcCCCCEEEEECCChH---HHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHccCCcE-EEccchhHHHHHHH
Q 024671 49 VLASVFDKYPNMIVVDYTVPA---AVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIENSNVYA-VISPQMGKQVVAFL 122 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p~---~~~~~~~~~~~~--g~plViGTTG~~~~~~~~l~~~~~~~~-v~s~NfSlGv~ll~ 122 (264)
.++.+.+.+||.|.+=|+.+. .+.+.++...+. ++++++|=.+++++--+.++-+..++. .|+.|-.-+|.+..
T Consensus 131 ~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~~v~~~~ 210 (213)
T cd02069 131 ILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASRALGVAN 210 (213)
T ss_pred HHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHHHHHHHH
Confidence 344445568997777777653 445556655555 578888888888765444444455776 89999888886644
Q ss_pred H
Q 024671 123 A 123 (264)
Q Consensus 123 ~ 123 (264)
+
T Consensus 211 ~ 211 (213)
T cd02069 211 K 211 (213)
T ss_pred H
Confidence 3
No 52
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=79.52 E-value=6.3 Score=37.96 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=52.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCcc-------ccc-cc---cc---cCc-----eeEeecCCchhhHHhhhhcCCCCE
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEE-------SGQ-KV---EV---CGK-----EIQVHGLSDRESVLASVFDKYPNM 60 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~-------~g~-~~---~~---~~~-----~i~i~~~~dl~~~l~~~~~~~~d~ 60 (264)
||+-++..+. -+||++++..+..... .|. +. +. +.. .=++..++|-+..+. ....|
T Consensus 28 mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~---~~~Id- 103 (438)
T COG4091 28 MGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIA---NDLID- 103 (438)
T ss_pred cchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhc---CCcce-
Confidence 8999998887 5999999887632211 110 00 00 000 012233445444432 12356
Q ss_pred EEEECC-ChHHHHHHHHHHHhcCCCeEE
Q 024671 61 IVVDYT-VPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 61 VvIDFS-~p~~~~~~~~~~~~~g~plVi 87 (264)
||||-| .|+.--+..-.++.+++.+|+
T Consensus 104 vIIdATG~p~vGA~~~l~Ai~h~KHlVM 131 (438)
T COG4091 104 VIIDATGVPEVGAKIALEAILHGKHLVM 131 (438)
T ss_pred EEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence 899999 788888888889999999998
No 53
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=78.53 E-value=20 Score=34.57 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=50.9
Q ss_pred hhHHhhhh-cCCCCEEEEECC----Ch-HHHHHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 47 ESVLASVF-DKYPNMIVVDYT----VP-AAVNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 47 ~~~l~~~~-~~~~d~VvIDFS----~p-~~~~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
..+++.+. +...|.|+|-+. .. ..+...++.+.+ .++|+|+...|-..++..++.+.+++|++.+.+|.-.+
T Consensus 299 ~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL~~~Gipvf~~~~~~~a~ 378 (392)
T PRK14046 299 AKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILAESGLPIITADTLAEAA 378 (392)
T ss_pred HHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHcCCCeeecCCHHHHH
Confidence 34444433 344575666544 22 233444444545 68999999988666666665566789999999999887
Q ss_pred HHHHHHHH
Q 024671 119 VAFLAAME 126 (264)
Q Consensus 119 ~ll~~~~~ 126 (264)
....++++
T Consensus 379 ~~~v~~~~ 386 (392)
T PRK14046 379 EKAVEAWK 386 (392)
T ss_pred HHHHHHHh
Confidence 65555443
No 54
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=78.46 E-value=10 Score=35.82 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=57.3
Q ss_pred ChHHHHHHHHhC----CCeEEEEEcCCCc---------------------cccccccccCceeEeecCCchhhHHhhhhc
Q 024671 1 MGKAVIKAADAA----GLELVPVSFGTEE---------------------ESGQKVEVCGKEIQVHGLSDRESVLASVFD 55 (264)
Q Consensus 1 MG~~i~~~~~~~----~~eLv~~~~~~~~---------------------~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~ 55 (264)
+||.+.+++.++ ++++++.-+-... ..|+.+.+.+..+.+....++++. ...+
T Consensus 10 IGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~--~w~~ 87 (325)
T TIGR01532 10 IGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTPEAL--PWRA 87 (325)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCChhhc--cccc
Confidence 489999988743 5999987552111 012222233445667644444332 1223
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
..+| ++|+-|-+....+....+++.|...|+-+.=+
T Consensus 88 ~gvD-iVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~ 123 (325)
T TIGR01532 88 LGVD-LVLDCTGVYGNREQGERHIRAGAKRVLFSHPG 123 (325)
T ss_pred cCCC-EEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence 4688 89999999999999999999998777766444
No 55
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.38 E-value=8.5 Score=35.61 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=60.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcccccccc--------ccCcee--EeecCCchhhHHhhhhcCCCCEEEEECCChHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVE--------VCGKEI--QVHGLSDRESVLASVFDKYPNMIVVDYTVPAA 70 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~--------~~~~~i--~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~ 70 (264)
||..++..+...|+++.. +++.+... +.+. ..+..+ .+...+++++++ ..+| +||=...+..
T Consensus 15 mG~~ia~~L~~~G~~V~~-~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-----~~aD-~Vi~~v~~~~ 86 (328)
T PRK14618 15 WGTALAVLAASKGVPVRL-WARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEAL-----AGAD-FAVVAVPSKA 86 (328)
T ss_pred HHHHHHHHHHHCCCeEEE-EeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-----cCCC-EEEEECchHH
Confidence 899999888888888763 34322110 0110 001100 022234554443 2578 6777777777
Q ss_pred HHHHHHHHHhcCCCeEEecCCCCHH-----HHHHHHHc---cCCcEEEccchhHH
Q 024671 71 VNGNAELYSKVGVPFVMGTTGGDRV-----RLHETIEN---SNVYAVISPQMGKQ 117 (264)
Q Consensus 71 ~~~~~~~~~~~g~plViGTTG~~~~-----~~~~l~~~---~~~~~v~s~NfSlG 117 (264)
+.+.++.+ +.+..+|.-+||++.+ .+.+.... .++.++-.||+.--
T Consensus 87 ~~~v~~~l-~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 87 LRETLAGL-PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred HHHHHHhc-CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 77766554 4567889899998632 33333222 23555678886653
No 56
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=77.60 E-value=8.7 Score=38.02 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=51.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccc-c-ccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-E-VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~-~-~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
||+.+++.+.+.|++|.. .++.+... +.+ . ....+..+....+++++.+++. .||+|++=-..++++.+.++..
T Consensus 12 MG~~lA~nL~~~G~~V~v-~dr~~~~~-~~l~~~~~~~g~~i~~~~s~~e~v~~l~--~~d~Iil~v~~~~~v~~vi~~l 87 (470)
T PTZ00142 12 MGQNLALNIASRGFKISV-YNRTYEKT-EEFVKKAKEGNTRVKGYHTLEELVNSLK--KPRKVILLIKAGEAVDETIDNL 87 (470)
T ss_pred HHHHHHHHHHHCCCeEEE-EeCCHHHH-HHHHHhhhhcCCcceecCCHHHHHhcCC--CCCEEEEEeCChHHHHHHHHHH
Confidence 899999999999998774 45433210 011 0 0000222223456666554321 4674444446666776665543
Q ss_pred H---hcCCCeEEecCCCCHH
Q 024671 79 S---KVGVPFVMGTTGGDRV 95 (264)
Q Consensus 79 ~---~~g~plViGTTG~~~~ 95 (264)
. +.|.-+|-++|++..+
T Consensus 88 ~~~L~~g~iIID~gn~~~~d 107 (470)
T PTZ00142 88 LPLLEKGDIIIDGGNEWYLN 107 (470)
T ss_pred HhhCCCCCEEEECCCCCHHH
Confidence 3 4577788888887543
No 57
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=77.36 E-value=9.3 Score=36.24 Aligned_cols=79 Identities=30% Similarity=0.344 Sum_probs=48.7
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCcc-------ccccc---------cccCceeEeecCCchhhHHhhhhcCCCCEEEE
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEE-------SGQKV---------EVCGKEIQVHGLSDRESVLASVFDKYPNMIVV 63 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~-------~g~~~---------~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvI 63 (264)
+||.+++.+. +++++||+..+..+.. .|-+. ...+.++.+. .++++.+ ..+| +|+
T Consensus 9 IGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~--g~~eeLl-----~~vD-iVv 80 (333)
T TIGR01546 9 IGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVA--GTLEDLL-----EKVD-IVV 80 (333)
T ss_pred HHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEec--CCHHHHh-----hcCC-EEE
Confidence 5889999887 6899999887733321 11111 0111134443 2455544 2588 789
Q ss_pred ECCChHHHHHHHHHHHhcCCCeEE
Q 024671 64 DYTVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 64 DFS~p~~~~~~~~~~~~~g~plVi 87 (264)
+.|-...-..+.+...+.|.+.|+
T Consensus 81 e~Tp~~~~~~na~~~~~~GakaVl 104 (333)
T TIGR01546 81 DATPGGIGAKNKPLYEKAGVKAIF 104 (333)
T ss_pred ECCCCCCChhhHHHHHhCCcCEEE
Confidence 988666667788888888866544
No 58
>PLN02522 ATP citrate (pro-S)-lyase
Probab=77.07 E-value=13 Score=38.06 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=46.1
Q ss_pred CceeEeecCCchhhHHhhhhcCCCCEEEEECCCh-HHHHHHHHHHHhcCCC-eEEecCCCCHHHHHHHHHccC-C-cEEE
Q 024671 35 GKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AAVNGNAELYSKVGVP-FVMGTTGGDRVRLHETIENSN-V-YAVI 110 (264)
Q Consensus 35 ~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p-~~~~~~~~~~~~~g~p-lViGTTG~~~~~~~~l~~~~~-~-~~v~ 110 (264)
..++||++ ..+++.+. ...+| +.|=|-.| .+....++.|.+.|++ +||=|.|+.+.+.+++.+.++ . .-++
T Consensus 60 ~~~iPVf~--tv~eA~~~--~~~~~-~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlI 134 (608)
T PLN02522 60 EIAIPVHG--SIEAACKA--HPTAD-VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVI 134 (608)
T ss_pred eeCccccc--hHHHHHHh--CCCCc-EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEE
Confidence 34788985 56666543 12467 67777765 5667778888788987 555577887654444433332 2 2377
Q ss_pred ccc
Q 024671 111 SPQ 113 (264)
Q Consensus 111 s~N 113 (264)
-||
T Consensus 135 GPN 137 (608)
T PLN02522 135 GPA 137 (608)
T ss_pred CCC
Confidence 777
No 59
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=77.05 E-value=17 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=40.1
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCC
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNV 106 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~ 106 (264)
..| +|.=|-.|+.+.+.++.+++.+.++|=.--|...++..+..+.++.
T Consensus 73 ~ID-iVdvFR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea~~~~~~aG~ 121 (140)
T COG1832 73 PID-IVDVFRRSEAAPEVAREALEKGAKVVWLQLGIRNEEAAEKARDAGL 121 (140)
T ss_pred CCc-EEEEecChhhhHHHHHHHHhhCCCeEEEecCcCCHHHHHHHHHhCc
Confidence 457 7788999999999999999999999998888866666666665554
No 60
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=76.94 E-value=13 Score=30.84 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.9
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFG 22 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~ 22 (264)
|||.+++.+. .++++|+++.+.
T Consensus 11 iGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 11 IGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred HHHHHHHHHHhCCCCEEEEeecC
Confidence 8999999887 689999998773
No 61
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=73.66 E-value=48 Score=28.65 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.2
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.++|.-..++...+.++.+.+.++|+|.-
T Consensus 49 i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 49 VENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred HHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEe
Confidence 444444578866776666666778888899999999864
No 62
>PRK06813 homoserine dehydrogenase; Validated
Probab=73.61 E-value=6.9 Score=37.26 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=53.1
Q ss_pred CCCEEEEECCCh-----HHHHHHHHHHHhcCCCeEEecCCCC---HHHHHHHHHccCCcEEEccchhHHHHHHHHH
Q 024671 57 YPNMIVVDYTVP-----AAVNGNAELYSKVGVPFVMGTTGGD---RVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (264)
Q Consensus 57 ~~d~VvIDFS~p-----~~~~~~~~~~~~~g~plViGTTG~~---~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~ 124 (264)
..| |+||-|.. +-.+.+++.++++|+.+|..--+.- .+++.+++++.+..+.|.++..=|+-++.-+
T Consensus 86 ~~d-VvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~l 160 (346)
T PRK06813 86 SGT-VLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDIG 160 (346)
T ss_pred CCC-EEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHHH
Confidence 357 89999753 5778999999999999998766542 3567777877889999999988887776654
No 63
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=71.90 E-value=18 Score=33.99 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=48.8
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCcccccccc----------ccC--ceeEeecCCchhhHHhhhhcCCCCEEEEECCC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVE----------VCG--KEIQVHGLSDRESVLASVFDKYPNMIVVDYTV 67 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~----------~~~--~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~ 67 (264)
||+.+++.+. .++++|++.++... ..|+++. ..+ ..+.+... +.+ . ...+| +++..+-
T Consensus 12 ~G~~L~~~l~~~~~~~l~~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----~~~~D-vVf~a~p 82 (341)
T TIGR00978 12 VGQKFVKLLAKHPYFELAKVVASPR-SAGKRYGEAVKWIEPGDMPEYVRDLPIVEP-EPV-A-----SKDVD-IVFSALP 82 (341)
T ss_pred HHHHHHHHHHhCCCceEEEEEEChh-hcCCcchhhccccccCCCccccceeEEEeC-CHH-H-----hccCC-EEEEeCC
Confidence 7999999887 56799998765332 2343331 000 11222111 111 1 13578 7888887
Q ss_pred hHHHHHHHHHHHhcCCCeEEec
Q 024671 68 PAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~plViGT 89 (264)
+....++.+.+.+.|+.+|.=+
T Consensus 83 ~~~s~~~~~~~~~~G~~VIDls 104 (341)
T TIGR00978 83 SEVAEEVEPKLAEAGKPVFSNA 104 (341)
T ss_pred HHHHHHHHHHHHHCCCEEEECC
Confidence 7888899999999999876533
No 64
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=71.86 E-value=17 Score=34.49 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=57.2
Q ss_pred ChHHHHHHHHh----CCCeEEEEEc--------------CCC-------ccccccccccCceeEeecCCchhhHHhhhhc
Q 024671 1 MGKAVIKAADA----AGLELVPVSF--------------GTE-------EESGQKVEVCGKEIQVHGLSDRESVLASVFD 55 (264)
Q Consensus 1 MG~~i~~~~~~----~~~eLv~~~~--------------~~~-------~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~ 55 (264)
+||.+.+.+.+ ++++|++.=+ +.. ...|+.+.+.+..+.+....++++. ...+
T Consensus 12 IGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~--~w~~ 89 (336)
T PRK13535 12 IGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERDIASL--PWRE 89 (336)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCcccC--cccc
Confidence 48999998864 3688885432 111 1112223344556777744444321 1223
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
..+| ++|+-|-.....+....+++.|...|+=+.=+
T Consensus 90 ~gvD-iVle~tG~~~s~~~a~~~l~aGAk~V~iSap~ 125 (336)
T PRK13535 90 LGVD-VVLDCTGVYGSREDGEAHIAAGAKKVLFSHPG 125 (336)
T ss_pred cCCC-EEEEccchhhhHHHHHHHHHcCCEEEEecCCc
Confidence 4688 89999999999999999999998777766444
No 65
>PRK06091 membrane protein FdrA; Validated
Probab=71.06 E-value=13 Score=37.63 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=49.6
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccC-Cc-EEEccch
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSN-VY-AVISPQM 114 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~-~~-~v~s~Nf 114 (264)
....+++.+ ..+| ++|=+.-++.+.+.++.|.+.|+.+||=|.||..+..+++.+.++ .. .++-||-
T Consensus 107 t~~~a~~~l--pe~D-LAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmGPNC 175 (555)
T PRK06091 107 RWDSACQKL--PDAN-LALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLVMGPDC 175 (555)
T ss_pred cHHHHHhcC--CCCC-EEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEECCCC
Confidence 444444433 2357 667788889999999999999999999999998665555655544 44 5899998
No 66
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=70.37 E-value=58 Score=29.11 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=38.0
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVRL 97 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~~~~ 97 (264)
.|....+.++.+..+| ++|=+..++.+...++.|.+.|.+ .++|+.+|...++
T Consensus 178 ~d~~~~~~~~~~~~~d-~i~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 231 (334)
T cd06347 178 TDFSAQLTKIKAKNPD-VIFLPGYYTEVGLIAKQARELGIKVPILGGDGWDSPKL 231 (334)
T ss_pred CcHHHHHHHHHhcCCC-EEEEcCchhhHHHHHHHHHHcCCCCcEEecccccCHHH
Confidence 3555556666667889 566667788888888999988865 4567778875544
No 67
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=70.30 E-value=27 Score=33.15 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=63.2
Q ss_pred ChHHHHHHHH-hC-CCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEEC--CChH-HHHHHH
Q 024671 1 MGKAVIKAAD-AA-GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDY--TVPA-AVNGNA 75 (264)
Q Consensus 1 MG~~i~~~~~-~~-~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDF--S~p~-~~~~~~ 75 (264)
||+.-++.+. .+ +++|++..+...+.. +.. ....+++.+ .|.++.++ .+|+++|.- +.|. .=.+..
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA-~~~-A~~~gi~~y--~~~eell~-----d~Di~~V~ipt~~P~~~H~e~a 83 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERS-RAL-AHRLGVPLY--CEVEELPD-----DIDIACVVVRSAIVGGQGSALA 83 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHH-HHH-HHHhCCCcc--CCHHHHhc-----CCCEEEEEeCCCCCCccHHHHH
Confidence 5666666665 35 799999887543211 111 011234444 46666653 466556665 3343 337888
Q ss_pred HHHHhcCCCeEEecCCCCHHHHHH---HHHccCCcEEEccchhHHHHHHHHHH
Q 024671 76 ELYSKVGVPFVMGTTGGDRVRLHE---TIENSNVYAVISPQMGKQVVAFLAAM 125 (264)
Q Consensus 76 ~~~~~~g~plViGTTG~~~~~~~~---l~~~~~~~~v~s~NfSlGv~ll~~~~ 125 (264)
..|+++|+++.+=-. +..+|.++ ++++++..+.. ..|.-.+..+.+++
T Consensus 84 ~~aL~aGkHVL~EKP-la~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i 134 (343)
T TIGR01761 84 RALLARGIHVLQEHP-LHPRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFI 134 (343)
T ss_pred HHHHhCCCeEEEcCC-CCHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHH
Confidence 899999998776332 33444444 44444444433 44555555555554
No 68
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=70.04 E-value=23 Score=32.59 Aligned_cols=70 Identities=21% Similarity=0.105 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH-
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS- 79 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~- 79 (264)
||+.+++.+.+.|+++.. .++.. ..++++++. .+| +||=.....++.+.++...
T Consensus 15 ~G~~lA~~l~~~G~~V~~-~~r~~------------------~~~~~~~~~-----~ad-vvi~~vp~~~~~~v~~~l~~ 69 (308)
T PRK14619 15 WGSTLAGLASANGHRVRV-WSRRS------------------GLSLAAVLA-----DAD-VIVSAVSMKGVRPVAEQVQA 69 (308)
T ss_pred HHHHHHHHHHHCCCEEEE-EeCCC------------------CCCHHHHHh-----cCC-EEEEECChHHHHHHHHHHHH
Confidence 799999988888998863 33321 123344332 478 4444433345555555543
Q ss_pred ---hcCCCeEEecCCCCHH
Q 024671 80 ---KVGVPFVMGTTGGDRV 95 (264)
Q Consensus 80 ---~~g~plViGTTG~~~~ 95 (264)
+.+..+|..|+|++++
T Consensus 70 ~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 70 LNLPPETIIVTATKGLDPE 88 (308)
T ss_pred hcCCCCcEEEEeCCcccCC
Confidence 2356678888888754
No 69
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.32 E-value=11 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=29.3
Q ss_pred CCC--EEEEECCChHHHHHHHHHHHhcCCCeEEec-CCCC
Q 024671 57 YPN--MIVVDYTVPAAVNGNAELYSKVGVPFVMGT-TGGD 93 (264)
Q Consensus 57 ~~d--~VvIDFS~p~~~~~~~~~~~~~g~plViGT-TG~~ 93 (264)
.+| +|+.||-+..+....-+.|.++++|++.-- +|++
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 467 346788888888888888888888888877 7775
No 70
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=68.56 E-value=21 Score=32.66 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCC--eEEecCC
Q 024671 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~p--lViGTTG 91 (264)
+.+..+++++.+.|+. +|.||||
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~GstG 45 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTG 45 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCc
Confidence 4455555566665554 3455665
No 71
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=68.35 E-value=75 Score=27.11 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=24.9
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.+++...++.. .+.++.+.+.|+|+|.-
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~-~~~~~~~~~~~ipvV~~ 85 (266)
T cd06282 48 VETLLRQRVDGLILTVADAAT-SPALDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHhcCCCEEEEecCCCCc-hHHHHHHhhCCCCEEEE
Confidence 334434568866776655543 34678888999998654
No 72
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=68.08 E-value=21 Score=30.02 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=52.3
Q ss_pred hhcCCCC--EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHH-------HHHHHHHccCCcEE-EccchhHHHHHHH
Q 024671 53 VFDKYPN--MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRV-------RLHETIENSNVYAV-ISPQMGKQVVAFL 122 (264)
Q Consensus 53 ~~~~~~d--~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~-------~~~~l~~~~~~~~v-~s~NfSlGv~ll~ 122 (264)
+....+| .+|+|-|+.+--...+....+.|+|+|+.-|=++.. +.+.+.+.-++|++ +|+--.-|+.-++
T Consensus 74 l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 74 LLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred HhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 3345788 568999999988888899999999999998877642 24567777788875 5776777765544
Q ss_pred H
Q 024671 123 A 123 (264)
Q Consensus 123 ~ 123 (264)
+
T Consensus 154 ~ 154 (156)
T PF02421_consen 154 D 154 (156)
T ss_dssp H
T ss_pred h
Confidence 3
No 73
>PLN02688 pyrroline-5-carboxylate reductase
Probab=67.68 E-value=34 Score=30.37 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=55.8
Q ss_pred ChHHHHHHHHhCCC----eEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHH
Q 024671 1 MGKAVIKAADAAGL----ELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~~~~~----eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (264)
||+.+++.+.+.++ ++....++.+... +. ....|+.+. ++..++.+ .+| +||=-..|+.+.+.++
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~-~~--~~~~g~~~~--~~~~e~~~-----~aD-vVil~v~~~~~~~vl~ 79 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARR-DV--FQSLGVKTA--ASNTEVVK-----SSD-VIILAVKPQVVKDVLT 79 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHH-HH--HHHcCCEEe--CChHHHHh-----cCC-EEEEEECcHHHHHHHH
Confidence 89999998887676 6653224332111 11 111234332 23333332 578 5555557888888876
Q ss_pred HHHh---cCCCeEEecCCCCHHHHHHHHHccCCcEE-Eccch
Q 024671 77 LYSK---VGVPFVMGTTGGDRVRLHETIENSNVYAV-ISPQM 114 (264)
Q Consensus 77 ~~~~---~g~plViGTTG~~~~~~~~l~~~~~~~~v-~s~Nf 114 (264)
.... .+..+|.-+.|.+.++++++... .+++ ..||.
T Consensus 80 ~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~--~~vvr~mP~~ 119 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAGITLADLQEWAGG--RRVVRVMPNT 119 (266)
T ss_pred HHHhhcCCCCEEEEecCCCcHHHHHHHcCC--CCEEEECCCc
Confidence 5543 34445666678877777654332 2555 46664
No 74
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=67.67 E-value=37 Score=30.93 Aligned_cols=108 Identities=22% Similarity=0.079 Sum_probs=61.0
Q ss_pred HHHHHHHHh-CC-CeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 3 KAVIKAADA-AG-LELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 3 ~~i~~~~~~-~~-~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+.....+.+ ++ +++++..+..+... +.. ....+++ ....|+++.|+. ...| +|+=-|-+..=.+.+..|++
T Consensus 17 ~~~~~~~~~~~~~~~~vav~d~~~~~a-~~~-a~~~~~~-~~~~~~~~ll~~---~~iD-~V~Iatp~~~H~e~~~~AL~ 89 (342)
T COG0673 17 KAHLPALAALGGGLELVAVVDRDPERA-EAF-AEEFGIA-KAYTDLEELLAD---PDID-AVYIATPNALHAELALAALE 89 (342)
T ss_pred HHhHHHHHhCCCceEEEEEecCCHHHH-HHH-HHHcCCC-cccCCHHHHhcC---CCCC-EEEEcCCChhhHHHHHHHHh
Confidence 344445553 44 69998877544211 000 0111332 223577776652 2367 56666666777899999999
Q ss_pred cCCCeEEecCC-CCHHH---HHHHHHccCCcEEEccchhHH
Q 024671 81 VGVPFVMGTTG-GDRVR---LHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 81 ~g~plViGTTG-~~~~~---~~~l~~~~~~~~v~s~NfSlG 117 (264)
+|+++.+=-.= .+.++ +.+++++++..+...-|+-.-
T Consensus 90 aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~ 130 (342)
T COG0673 90 AGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFD 130 (342)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcC
Confidence 99988872221 12333 445566666677777774443
No 75
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=67.57 E-value=19 Score=29.15 Aligned_cols=77 Identities=16% Similarity=0.287 Sum_probs=41.7
Q ss_pred hHHHHHHHH---hCCCeEEEEEcCCCccccccccccCceeEeec-CCchhhHHhhhhcCCCCEEE--EECCChHHHHHHH
Q 024671 2 GKAVIKAAD---AAGLELVPVSFGTEEESGQKVEVCGKEIQVHG-LSDRESVLASVFDKYPNMIV--VDYTVPAAVNGNA 75 (264)
Q Consensus 2 G~~i~~~~~---~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~-~~dl~~~l~~~~~~~~d~Vv--IDFS~p~~~~~~~ 75 (264)
|+.+.+.+. ..|+.++|.++..+...+... .++++.+ .+|+.+.+. +...|.|+ ++.+..+.+.+.+
T Consensus 89 ~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~----~~~~~lg~~~~l~~~~~---~~~id~v~ial~~~~~~~i~~ii 161 (175)
T PF13727_consen 89 GRELAEALRSNPRLGYRVVGFVDDDPSDRGPEI----DGVPVLGDLDDLPELVR---EHDIDEVIIALPWSEEEQIKRII 161 (175)
T ss_dssp HHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EE----TTEEEE--GGGHHHHHH---HHT--EEEE--TTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhhcCceEEEEEeCchhhccCcc----cCceeEcCHHHHHHHHH---hCCCCEEEEEcCccCHHHHHHHH
Confidence 455666664 258899988875543222211 1345543 345555544 34677444 4556678889999
Q ss_pred HHHHhcCCCe
Q 024671 76 ELYSKVGVPF 85 (264)
Q Consensus 76 ~~~~~~g~pl 85 (264)
+.|.++++.+
T Consensus 162 ~~~~~~~v~v 171 (175)
T PF13727_consen 162 EELENHGVRV 171 (175)
T ss_dssp HHHHTTT-EE
T ss_pred HHHHhCCCEE
Confidence 9999988875
No 76
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.52 E-value=65 Score=27.98 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=27.9
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
++.+....+|.++|-...++.+.+.++.+.+.|+|+|.=.
T Consensus 50 i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 50 IEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeC
Confidence 4444445788666666566666677888889999987753
No 77
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=66.80 E-value=25 Score=33.60 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=32.2
Q ss_pred HHhhhhcCCCCEEEEECCCh--HHHHHHHHHHHhcCCCeEEecCCCCHHH
Q 024671 49 VLASVFDKYPNMIVVDYTVP--AAVNGNAELYSKVGVPFVMGTTGGDRVR 96 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p--~~~~~~~~~~~~~g~plViGTTG~~~~~ 96 (264)
+++.+.+..||||.+|-.-| +.+...-+......+|+|+-++ ++.+.
T Consensus 39 a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVimvss-lt~~g 87 (350)
T COG2201 39 AIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMVSS-LTEEG 87 (350)
T ss_pred HHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEEEec-ccccc
Confidence 34555566899999999988 3444444444557999988877 66543
No 78
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=66.73 E-value=1.2e+02 Score=28.66 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=43.7
Q ss_pred hHHHHHHHHhCCCe---EEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 2 GKAVIKAADAAGLE---LVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 2 G~~i~~~~~~~~~e---Lv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
|+++++.+.+++|+ |+.. .+. ...|+.+...+..+.+. +++ ...+ ...| +++..+-.....+.++.+
T Consensus 12 G~eLi~lL~~~~hp~~~l~~~-as~-~~~g~~~~~~~~~~~~~---~~~--~~~~--~~~D-~v~~a~g~~~s~~~a~~~ 81 (339)
T TIGR01296 12 GQEMLKILEERNFPIDKLVLL-ASD-RSAGRKVTFKGKELEVN---EAK--IESF--EGID-IALFSAGGSVSKEFAPKA 81 (339)
T ss_pred HHHHHHHHHhCCCChhhEEEE-ecc-ccCCCeeeeCCeeEEEE---eCC--hHHh--cCCC-EEEECCCHHHHHHHHHHH
Confidence 88999988765554 4322 111 23444443323233332 111 1111 2578 788888888888999988
Q ss_pred HhcCCCeE
Q 024671 79 SKVGVPFV 86 (264)
Q Consensus 79 ~~~g~plV 86 (264)
.+.|+.+|
T Consensus 82 ~~~G~~VI 89 (339)
T TIGR01296 82 AKCGAIVI 89 (339)
T ss_pred HHCCCEEE
Confidence 88898655
No 79
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=66.71 E-value=70 Score=28.99 Aligned_cols=87 Identities=10% Similarity=-0.010 Sum_probs=44.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHH---HH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNA---EL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~---~~ 77 (264)
||..+++.+.+.|+++.. .++..... +. ....++.. .+++.++++ .+|+|++=...++.+.+.+ +.
T Consensus 7 mG~~mA~~L~~~G~~V~v-~dr~~~~~-~~--l~~~g~~~--~~s~~~~~~-----~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRV-FDLFPDAV-EE--AVAAGAQA--AASPAEAAE-----GADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred hHHHHHHHHHhCCCeEEE-EeCCHHHH-HH--HHHcCCee--cCCHHHHHh-----cCCEEEEeCCChHHHHHHHcCcch
Confidence 899999888888998764 45432110 00 11112222 234444432 4675555555556666555 22
Q ss_pred HH---hcCCCeEEecCCCCHHHHHH
Q 024671 78 YS---KVGVPFVMGTTGGDRVRLHE 99 (264)
Q Consensus 78 ~~---~~g~plViGTTG~~~~~~~~ 99 (264)
.. ..|. +||=+|+.+++..++
T Consensus 76 l~~~~~~g~-~vid~st~~p~~~~~ 99 (288)
T TIGR01692 76 ILPKVAKGS-LLIDCSTIDPDSARK 99 (288)
T ss_pred HhhcCCCCC-EEEECCCCCHHHHHH
Confidence 22 2233 555555666654333
No 80
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=66.68 E-value=30 Score=31.39 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=39.7
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--CeEEecCCCCHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDRV 95 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--plViGTTG~~~~ 95 (264)
.|....+..+....+| +||=|..+..+...++.+.+.|. ..+++++||...
T Consensus 204 ~d~~~~l~~l~~~~~~-vvv~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~~~~ 256 (348)
T cd06350 204 EDIKRILKKLKSSTAR-VIVVFGDEDDALRLFCEAYKLGMTGKYWIISTDWDTS 256 (348)
T ss_pred HHHHHHHHHHHhCCCc-EEEEEeCcHHHHHHHHHHHHhCCCCeEEEEEccccCc
Confidence 3666777777777788 67778878888999999999886 467888898654
No 81
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=66.25 E-value=30 Score=32.53 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCCH-HHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEee
Q 024671 68 PAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLES 146 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~plViGTTG~~~-~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~ 146 (264)
++...+.++...+.+.|.+|=|-|++. +++.++|++.++|++.++.-|- .++..+...+.+.|.+.. ...--.++.
T Consensus 68 ~~~r~~~~~~l~~~~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t~--~~i~~l~~~L~~~la~~~-~iHg~~v~V 144 (308)
T PRK05428 68 EEERKERLKKLFSLEPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLSTT--RLISKLTNYLDRKLAPRT-SVHGVLVDI 144 (308)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcHH--HHHHHHHHHHHHHhhhcc-eeeeEEEEE
Confidence 456778899999999999999999975 5788899999999999888543 344455555555554211 111122222
Q ss_pred cC-----CCCCCC--cHHHHHHHH
Q 024671 147 HQ-----AGKLDT--SGTAKAVIS 163 (264)
Q Consensus 147 HH-----~~K~Da--SGTAl~l~~ 163 (264)
+= ..+..+ |.+|+.|.+
T Consensus 145 ~G~GvLi~G~SG~GKSelALeLi~ 168 (308)
T PRK05428 145 YGIGVLITGESGIGKSETALELIK 168 (308)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 22 245555 778887764
No 82
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=66.20 E-value=79 Score=27.33 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=29.1
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.+++.-+.++...+.+..+.+.|+|+|.-
T Consensus 53 ~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 53 IRNLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred HHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE
Confidence 444444578977777777777777888888999999974
No 83
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=66.00 E-value=80 Score=26.56 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=27.1
Q ss_pred hhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 51 ASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
..+....+|.+++.-+.+.... ++.+.+.|+|+|.-.+.
T Consensus 49 ~~~~~~~~d~iii~~~~~~~~~--~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 49 ELLLSRRVDGIILAPSRLDDEL--LEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHHHcCcCEEEEecCCcchHH--HHHHHHcCCCEEEeccc
Confidence 3334457886666666666555 88889999999887654
No 84
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.81 E-value=88 Score=26.98 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=24.9
Q ss_pred HHhhhhcCCCCEEEEECC---ChHHHHHHHHHHHhcCCCeEEe
Q 024671 49 VLASVFDKYPNMIVVDYT---VPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS---~p~~~~~~~~~~~~~g~plViG 88 (264)
.+..+....+|.++|.=+ .+....+.++.+.+.|+|+|.=
T Consensus 47 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 47 YVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE
Confidence 345555567895455322 2334566678888999997654
No 85
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=65.30 E-value=25 Score=32.43 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=4.6
Q ss_pred CCCeEEecC
Q 024671 82 GVPFVMGTT 90 (264)
Q Consensus 82 g~plViGTT 90 (264)
++|+++|+.
T Consensus 76 ~~pvi~gv~ 84 (303)
T PRK03620 76 RVPVIAGAG 84 (303)
T ss_pred CCcEEEecC
Confidence 355555554
No 86
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=65.19 E-value=33 Score=30.88 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=38.0
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCH-HHHHHHHHccCCcEEEccc
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~-~~~~~l~~~~~~~~v~s~N 113 (264)
.+.||-++|+++...++ .|.++|=-.||++. +++-.++...+.|+|+-++
T Consensus 78 piSIDT~~~~v~~aaL~----~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 78 PISVDTFNAEVAEAALK----AGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred eEEEeCCcHHHHHHHHH----hCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECc
Confidence 37999999997765555 56999999999964 5666677777788766553
No 87
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=64.88 E-value=30 Score=31.70 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=5.6
Q ss_pred cCCCeEEecC
Q 024671 81 VGVPFVMGTT 90 (264)
Q Consensus 81 ~g~plViGTT 90 (264)
.++|+|+|+.
T Consensus 73 g~~pvi~gv~ 82 (296)
T TIGR03249 73 GKVPVYTGVG 82 (296)
T ss_pred CCCcEEEecC
Confidence 3456666654
No 88
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.34 E-value=80 Score=30.27 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=54.5
Q ss_pred hHHHHHHHHhCCCeEEEEEcCCC-ccccccc-cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 2 GKAVIKAADAAGLELVPVSFGTE-EESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~~~-~~~g~~~-~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
|..+++.+.+.|.++.+ ++... ....... .+...++.+...+...+. ...+| +||-=+...-....+.+|.
T Consensus 17 G~~~A~~l~~~G~~V~~-~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~d-~vv~~~g~~~~~~~~~~a~ 89 (450)
T PRK14106 17 GLALAKFLKKLGAKVIL-TDEKEEDQLKEALEELGELGIELVLGEYPEEF-----LEGVD-LVVVSPGVPLDSPPVVQAH 89 (450)
T ss_pred HHHHHHHHHHCCCEEEE-EeCCchHHHHHHHHHHHhcCCEEEeCCcchhH-----hhcCC-EEEECCCCCCCCHHHHHHH
Confidence 67778777889998875 45332 1111100 111113333221211111 12478 4554333223344555555
Q ss_pred hcCCCe--------------EEecCCCC-----HHHHHHHHHccCCcEEEccchhHHHHHH
Q 024671 80 KVGVPF--------------VMGTTGGD-----RVRLHETIENSNVYAVISPQMGKQVVAF 121 (264)
Q Consensus 80 ~~g~pl--------------ViGTTG~~-----~~~~~~l~~~~~~~~v~s~NfSlGv~ll 121 (264)
+.|+|+ |||-||=. .+-+..+-+..+.++.+..| +|+.+.
T Consensus 90 ~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~ 148 (450)
T PRK14106 90 KKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLI 148 (450)
T ss_pred HCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHH
Confidence 555543 77888753 33455565555556667777 565543
No 89
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=63.94 E-value=30 Score=30.60 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=55.6
Q ss_pred ChHHHHHHHH--hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAAD--AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~--~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+++..+-- ..+++++++.|-.+..+|..+ .+++|+.-++++..+.+ ...| +.|=-...+.+.+..+..
T Consensus 95 lG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~----~~v~V~~~d~le~~v~~---~dv~-iaiLtVPa~~AQ~vad~L 166 (211)
T COG2344 95 LGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI----GDVPVYDLDDLEKFVKK---NDVE-IAILTVPAEHAQEVADRL 166 (211)
T ss_pred HHHHHhcCcchhhcCceEEEEecCCHHHhCccc----CCeeeechHHHHHHHHh---cCcc-EEEEEccHHHHHHHHHHH
Confidence 5788887663 578999999886554555543 23888888888877653 2455 455444456677788888
Q ss_pred HhcCCCeEEecC
Q 024671 79 SKVGVPFVMGTT 90 (264)
Q Consensus 79 ~~~g~plViGTT 90 (264)
.+.|+.-+.-=|
T Consensus 167 v~aGVkGIlNFt 178 (211)
T COG2344 167 VKAGVKGILNFT 178 (211)
T ss_pred HHcCCceEEecc
Confidence 888887666433
No 90
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=63.94 E-value=29 Score=33.00 Aligned_cols=90 Identities=29% Similarity=0.293 Sum_probs=53.2
Q ss_pred ChHHHHHHHH-hC-CCeEEEEEcCC-C--------------ccccc-----c-ccccCceeEeecCCchhhHHhhhhcCC
Q 024671 1 MGKAVIKAAD-AA-GLELVPVSFGT-E--------------EESGQ-----K-VEVCGKEIQVHGLSDRESVLASVFDKY 57 (264)
Q Consensus 1 MG~~i~~~~~-~~-~~eLv~~~~~~-~--------------~~~g~-----~-~~~~~~~i~i~~~~dl~~~l~~~~~~~ 57 (264)
+||.+.+++. +. ++|+|+.-+.. + .+.+. + +.+.+.+|++.+..+++. |. ..+..
T Consensus 12 IGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~~-l~-w~d~g 89 (335)
T COG0057 12 IGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPAN-LP-WADLG 89 (335)
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCChHH-CC-ccccC
Confidence 4999999998 56 69999886611 1 11111 1 123455788877655432 22 22334
Q ss_pred CCEEEEECCChHHHHHHHHHHHhcC--CCeEEecCCCC
Q 024671 58 PNMIVVDYTVPAAVNGNAELYSKVG--VPFVMGTTGGD 93 (264)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g--~plViGTTG~~ 93 (264)
.| ||||-|--=.-.++.+.-.+.| +.++++..+-+
T Consensus 90 vd-iVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~ 126 (335)
T COG0057 90 VD-IVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD 126 (335)
T ss_pred cc-EEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC
Confidence 67 8999876555666666555554 55666655544
No 91
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=63.32 E-value=31 Score=32.46 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=51.7
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCcccccccc----cc------C--ceeEeecCCchhhHHhhhhcCCCCEEEEECCC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVE----VC------G--KEIQVHGLSDRESVLASVFDKYPNMIVVDYTV 67 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~----~~------~--~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~ 67 (264)
+|+.+++.+. .+.++|++... .....|+.+. .. + ..+.+.. .+.+. + ..+| ++++.+.
T Consensus 15 iG~~l~~~L~~~p~~el~~~~~-s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~----~--~~~D-vVf~a~p 85 (349)
T PRK08664 15 VGQRFVQLLANHPWFEVTALAA-SERSAGKTYGEAVRWQLDGPIPEEVADMEVVS-TDPEA----V--DDVD-IVFSALP 85 (349)
T ss_pred HHHHHHHHHHcCCCceEEEEEc-ChhhcCCcccccccccccccccccccceEEEe-CCHHH----h--cCCC-EEEEeCC
Confidence 5899999887 68899997622 2223444431 10 0 1122321 12221 1 2578 7888888
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCC
Q 024671 68 PAAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
.....++++.+.+.|+.+|.-+.-|
T Consensus 86 ~~~s~~~~~~~~~~G~~vIDls~~f 110 (349)
T PRK08664 86 SDVAGEVEEEFAKAGKPVFSNASAH 110 (349)
T ss_pred hhHHHHHHHHHHHCCCEEEECCchh
Confidence 8888999999989999988766533
No 92
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=62.72 E-value=34 Score=30.37 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccch
Q 024671 67 VPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQM 114 (264)
Q Consensus 67 ~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~Nf 114 (264)
+|..+.+..+.+.+++++.|+...+.+..-.+.+++..+++++...++
T Consensus 184 s~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 184 SPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred CHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 467788888889999999999999888877888888888888888887
No 93
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=62.54 E-value=38 Score=31.19 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=48.8
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCc------ccc---c---c--c-ccc-Cce--eEeecCCchhhHHhhhhc-CCCCEE
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEE------ESG---Q---K--V-EVC-GKE--IQVHGLSDRESVLASVFD-KYPNMI 61 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~------~~g---~---~--~-~~~-~~~--i~i~~~~dl~~~l~~~~~-~~~d~V 61 (264)
||..+++.+.+.++++|+- +..+. ..| - + + .++ +.. +.++..+--.++++++.. ..+.|+
T Consensus 11 MG~n~v~rl~~~ghdvV~y-D~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDi 89 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGY-DVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDI 89 (300)
T ss_pred hhHHHHHHHHhCCCeEEEE-cCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCE
Confidence 8999999999999999963 42110 001 0 0 0 011 111 233333222344444432 123348
Q ss_pred EEECCC--hHHHHHHHHHHHhcCCCeE-EecCC
Q 024671 62 VVDYTV--PAAVNGNAELYSKVGVPFV-MGTTG 91 (264)
Q Consensus 62 vIDFS~--p~~~~~~~~~~~~~g~plV-iGTTG 91 (264)
|||=-+ -.-....-+.+.++|+.++ +||+|
T Consensus 90 vIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 90 VIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred EEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 999754 3444445555778999977 78887
No 94
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.11 E-value=95 Score=30.59 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=29.7
Q ss_pred EEecCCCC-----HHHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecC
Q 024671 86 VMGTTGGD-----RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQ 148 (264)
Q Consensus 86 ViGTTG~~-----~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH 148 (264)
|||-||=+ .+-+..+-+..+.+.....| +|+.++.. ++ ++.|+-|+|.-.
T Consensus 119 vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~p~~~~--------~~---~~~~~~VlE~ss 173 (488)
T PRK03369 119 WLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGSPVLDV--------LD---EPAELLAVELSS 173 (488)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--CchHHHHh--------cc---CCCCEEEEECCh
Confidence 56667653 23455565666666677778 67666332 12 345788888743
No 95
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=61.93 E-value=30 Score=34.25 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=55.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcccccc----------c----c--ccCce-eEeecCCchhhHHhhhhcCCCCEEEE
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQK----------V----E--VCGKE-IQVHGLSDRESVLASVFDKYPNMIVV 63 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~----------~----~--~~~~~-i~i~~~~dl~~~l~~~~~~~~d~VvI 63 (264)
||..++..+...|+++.. .+..+...... . . ....+ +.+ .++++++++ .+| +||
T Consensus 15 MG~~iA~~la~~G~~V~v-~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~--~~~~~ea~~-----~aD-~Vi 85 (495)
T PRK07531 15 IGGGWAARFLLAGIDVAV-FDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF--CASLAEAVA-----GAD-WIQ 85 (495)
T ss_pred HHHHHHHHHHhCCCeEEE-EeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe--eCCHHHHhc-----CCC-EEE
Confidence 899999888888998873 45433211000 0 0 00001 222 345554442 578 677
Q ss_pred ECCChHH-HHH----HHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccc
Q 024671 64 DYTVPAA-VNG----NAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 64 DFS~p~~-~~~----~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~N 113 (264)
.-..+.. ++. -+...++.+.-+++-|+|++..++.+.....+..++-.||
T Consensus 86 eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~ 140 (495)
T PRK07531 86 ESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPY 140 (495)
T ss_pred EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecC
Confidence 6544332 222 2333444556688899999887776544333334455554
No 96
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=61.58 E-value=41 Score=31.59 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCCH-HHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcC
Q 024671 68 PAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP 133 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~plViGTTG~~~-~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~ 133 (264)
++.-.+.++...+.+.|.+|=|-|+.. +++.++|++.++|++.++-.+-. +...+...+.+.|.
T Consensus 68 ~e~~~~~~~~~~~~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~--~~~~l~~~L~~~la 132 (304)
T TIGR00679 68 EEEQKQIIHNLLTLNPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE--LSFRLETYLNEQFA 132 (304)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH--HHHHHHHHHHHhhc
Confidence 455667888999999999999999975 57888999999999988886644 23333333444443
No 97
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=61.35 E-value=51 Score=30.37 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=38.4
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC----eEEecCCCCHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP----FVMGTTGGDRVRLHET 100 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p----lViGTTG~~~~~~~~l 100 (264)
.|....+..+....|| +|+-+..+..+...++.+.+.|.. .+++++ +...++..+
T Consensus 175 ~D~~~~v~~l~~~~pd-~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~ 233 (348)
T cd06355 175 TDFQSIINKIKAAKPD-VVVSTVNGDSNVAFFKQLKAAGITASKVPVLSFS-VAEEELRGI 233 (348)
T ss_pred hhHHHHHHHHHHhCCC-EEEEeccCCchHHHHHHHHHcCCCccCCeeEEcc-ccHHHHhhc
Confidence 4666666677777899 677788888888899999999874 345543 544445444
No 98
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=61.31 E-value=49 Score=28.56 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=46.3
Q ss_pred EEECCChHHHHHHHHHHHh------cCCCeEEecCCCC------HHHHHHH-------HHccCCcE-EEccchhHHHHHH
Q 024671 62 VVDYTVPAAVNGNAELYSK------VGVPFVMGTTGGD------RVRLHET-------IENSNVYA-VISPQMGKQVVAF 121 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~------~g~plViGTTG~~------~~~~~~l-------~~~~~~~~-v~s~NfSlGv~ll 121 (264)
..|.|+|+.+....+.+.. .-+|+.+||- |+ ++....+ ++.-+.+. +.|...||.||-.
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTK-yD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTK-YDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceEEeccc-hHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 4589999988777766654 3579999984 43 2222222 22234565 4577799999999
Q ss_pred HHHHHHHHHhcC
Q 024671 122 LAAMEIMAEQFP 133 (264)
Q Consensus 122 ~~~~~~aa~~l~ 133 (264)
++++ +||.|.
T Consensus 178 FK~v--lAklFn 187 (205)
T KOG1673|consen 178 FKIV--LAKLFN 187 (205)
T ss_pred HHHH--HHHHhC
Confidence 9886 777763
No 99
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=61.26 E-value=42 Score=31.60 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=51.8
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCCcccccccc-----ccCc-eeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHH
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVE-----VCGK-EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNG 73 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~-----~~~~-~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~ 73 (264)
+|+.+++.+. .++++|++..++. ..++.+. ..+. ...+. ++++. ....+| +++-.+-.....+
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~--~~g~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~vD-~Vf~alP~~~~~~ 83 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS--SAGKPLSDVHPHLRGLVDLVLE---PLDPE----ILAGAD-VVFLALPHGVSMD 83 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc--ccCcchHHhCcccccccCceee---cCCHH----HhcCCC-EEEECCCcHHHHH
Confidence 5889998887 5799999876532 1222210 1111 11222 22111 113578 6777888888899
Q ss_pred HHHHHHhcCCCeEEecCCC
Q 024671 74 NAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 74 ~~~~~~~~g~plViGTTG~ 92 (264)
.+..|.+.|+++|--+..|
T Consensus 84 ~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 84 LAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred HHHHHHhCCCEEEECCccc
Confidence 9999999999888888776
No 100
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.18 E-value=89 Score=28.35 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCHHHH
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVRL 97 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~~~~ 97 (264)
..|....+.++....+|.|++.. .+..+...++.|.+.|.. .++|+.|++..++
T Consensus 178 ~~d~~~~v~~i~~~~~d~vi~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 232 (344)
T cd06348 178 DTDFQAQITAVLNSKPDLIVISA-LAADGGNLVRQLRELGYNGLIVGGNGFNTPNV 232 (344)
T ss_pred CCCHHHHHHHHHhcCCCEEEECC-cchhHHHHHHHHHHcCCCCceeccccccCHHH
Confidence 44666777777778899545555 455566889999998754 4678888765444
No 101
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=61.16 E-value=26 Score=32.46 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=52.5
Q ss_pred EECCChHHHHHHHHHHHhcCCC--eEEecCC----CCHHHHHHH----HHcc-C-CcEEE---ccchhHHHHHHHHHHHH
Q 024671 63 VDYTVPAAVNGNAELYSKVGVP--FVMGTTG----GDRVRLHET----IENS-N-VYAVI---SPQMGKQVVAFLAAMEI 127 (264)
Q Consensus 63 IDFS~p~~~~~~~~~~~~~g~p--lViGTTG----~~~~~~~~l----~~~~-~-~~~v~---s~NfSlGv~ll~~~~~~ 127 (264)
||| +++..++++..+.|+. ++.|||| +|.+|..++ .+.. + +|++. +.|+.--+ ++++.
T Consensus 22 vD~---~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai----~lak~ 94 (299)
T COG0329 22 VDE---EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAI----ELAKH 94 (299)
T ss_pred cCH---HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHH----HHHHH
Confidence 555 7899999999999987 7789999 455655443 3333 3 66654 33343333 34333
Q ss_pred HHHhcCCCCCCCCEEEEeecCCCCCCCcHHHHHHHHHHHh
Q 024671 128 MAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQK 167 (264)
Q Consensus 128 aa~~l~~~~~~~dieI~E~HH~~K~DaSGTAl~l~~~i~~ 167 (264)
+. .+ +.|-=.+=..--.|.+..|...-....+++
T Consensus 95 a~-~~-----Gad~il~v~PyY~k~~~~gl~~hf~~ia~a 128 (299)
T COG0329 95 AE-KL-----GADGILVVPPYYNKPSQEGLYAHFKAIAEA 128 (299)
T ss_pred HH-hc-----CCCEEEEeCCCCcCCChHHHHHHHHHHHHh
Confidence 33 22 345544444555666556655544444433
No 102
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=60.42 E-value=50 Score=32.70 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=23.0
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEE
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVI 110 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~ 110 (264)
+.||-..|+.+..-++.+ +.++|+|-+.|.=+-+++..++...+.|+++
T Consensus 158 LSIDT~dpevleaAleag-ad~~plI~Sat~dN~~~m~~la~~yg~pvVv 206 (450)
T PRK04165 158 LILCSEDPAVLKAALEVV-ADRKPLLYAATKENYEEMAELAKEYNCPLVV 206 (450)
T ss_pred EEEeCCCHHHHHHHHHhc-CCCCceEEecCcchHHHHHHHHHHcCCcEEE
Confidence 455655555555555443 2245555555432223333344444555443
No 103
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=60.35 E-value=33 Score=31.24 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=39.7
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCC--HHHHHHHHHccCCcEEEccc
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD--RVRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~--~~~~~~l~~~~~~~~v~s~N 113 (264)
.+.||-+.|+++..-++.|. |.++|=-.||.. .+++-.++...+.|++.-++
T Consensus 71 plsIDT~~~~v~eaaL~~~~--G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 71 PLCIDSPNPAAIEAGLKVAK--GPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CEEEeCCCHHHHHHHHHhCC--CCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec
Confidence 37999999999888887764 999999999975 34555666667778765433
No 104
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=60.09 E-value=23 Score=29.70 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~ 23 (264)
+||.+.+.+. ++++||++.-+..
T Consensus 11 IGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 11 IGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESS
T ss_pred ccHHHHHhhcccceEEEEEEeccc
Confidence 4899999998 7899999876643
No 105
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=60.08 E-value=62 Score=29.12 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=37.4
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVR 96 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~~~ 96 (264)
.|....+..+....|| +|+=+..+......++.+.+.|.+ .+++++|+...+
T Consensus 179 ~d~~~~v~~l~~~~pd-~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 231 (312)
T cd06346 179 SSYSSEVAAAAAGGPD-ALVVIGYPETGSGILRSAYEQGLFDKFLLTDGMKSDS 231 (312)
T ss_pred CCHHHHHHHHHhcCCC-EEEEecccchHHHHHHHHHHcCCCCceEeeccccChH
Confidence 4666667777778899 566667777788889999888864 366677765443
No 106
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=59.88 E-value=96 Score=28.09 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=35.9
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC--eEEecCCCCHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP--FVMGTTGGDRVRLHET 100 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p--lViGTTG~~~~~~~~l 100 (264)
.|....+..+.+..||.|++.+..++. ...++.+.+.|.. ++.+++++++..+..+
T Consensus 174 ~d~~~~v~~l~~~~pd~v~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 231 (333)
T cd06358 174 TDFTSVLERIAASGADAVLSTLVGQDA-VAFNRQFAAAGLRDRILRLSPLMDENMLLAS 231 (333)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCch-HHHHHHHHHcCCCccCceeecccCHHHHHhc
Confidence 456666667777789954445555554 4788888888875 4455566776655444
No 107
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.73 E-value=27 Score=32.35 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=11.1
Q ss_pred hcCCCeEEecCCCCHHH
Q 024671 80 KVGVPFVMGTTGGDRVR 96 (264)
Q Consensus 80 ~~g~plViGTTG~~~~~ 96 (264)
+.++|+++|++..+.++
T Consensus 75 ~grvpvi~Gv~~~~t~~ 91 (309)
T cd00952 75 AGRVPVFVGATTLNTRD 91 (309)
T ss_pred CCCCCEEEEeccCCHHH
Confidence 45577777777766543
No 108
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=59.70 E-value=86 Score=27.83 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=59.6
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCc---cccccc----cc-cCce-eEeec-CCchhhHHhhhhcCCCCEEEEECCChHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEE---ESGQKV----EV-CGKE-IQVHG-LSDRESVLASVFDKYPNMIVVDYTVPAA 70 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~---~~g~~~----~~-~~~~-i~i~~-~~dl~~~l~~~~~~~~d~VvIDFS~p~~ 70 (264)
.|+.+++.+.+.|+.+++..|.... ..|.|. .. ...+ +.-+. ...++ -+++....+| |+|..+.+..
T Consensus 42 VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~--~~~i~~~~~D-vlip~a~~~~ 118 (227)
T cd01076 42 VGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERIT--NEELLELDCD-ILIPAALENQ 118 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecC--Cccceeeccc-EEEecCccCc
Confidence 3888998888889999988774221 112221 00 0000 00000 00000 0112234578 8999997766
Q ss_pred HHHHHHHHHhcCCCeEEecCCC--CHHHHHHHHHccCCcEEEccchhHH
Q 024671 71 VNGNAELYSKVGVPFVMGTTGG--DRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 71 ~~~~~~~~~~~g~plViGTTG~--~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
... +.+.+.+.++|+|-.-. +++..+.|.+ ..++|.|-|...
T Consensus 119 i~~--~~~~~l~a~~I~egAN~~~t~~a~~~L~~---rGi~~~PD~~aN 162 (227)
T cd01076 119 ITA--DNADRIKAKIIVEAANGPTTPEADEILHE---RGVLVVPDILAN 162 (227)
T ss_pred cCH--HHHhhceeeEEEeCCCCCCCHHHHHHHHH---CCCEEEChHHhc
Confidence 532 23335679999987664 4444444543 578888887664
No 109
>PRK08223 hypothetical protein; Validated
Probab=59.69 E-value=22 Score=33.09 Aligned_cols=33 Identities=15% Similarity=0.017 Sum_probs=26.6
Q ss_pred CCCEEEEECCCh---HHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYTVP---AAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS~p---~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+.. ++-+..-++|.++++|+|.|.+
T Consensus 117 ~~D-lVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~ 152 (287)
T PRK08223 117 GVD-VYVDGLDFFEFDARRLVFAACQQRGIPALTAAP 152 (287)
T ss_pred CCC-EEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 578 78998853 6777788899999999999843
No 110
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=59.61 E-value=1.3e+02 Score=26.90 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=43.0
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC---eEEecCCCCHHHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDRVRLHETIE 102 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p---lViGTTG~~~~~~~~l~~ 102 (264)
.|....+.++....+| +|+=++.+......++.+.+.+.. +.++.++++...+..+..
T Consensus 177 ~d~~~~~~~l~~~~~d-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (343)
T PF13458_consen 177 TDFSALVQQLKSAGPD-VVVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSLDDASLQQLGG 237 (343)
T ss_dssp SHHHHHHHHHHHTTTS-EEEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGGSSHHHHHHHG
T ss_pred ccchHHHHHHhhcCCC-EEEEeccchhHHHHHHHHHhhccccccceeeccccCcHHHHHhhh
Confidence 4666667777777899 688888999999999999998776 445555566666666654
No 111
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.57 E-value=22 Score=34.16 Aligned_cols=147 Identities=19% Similarity=0.167 Sum_probs=78.2
Q ss_pred hHHHHHHHH-hCCCeEEEEEcCCCcccc-----ccc--ccc-CceeEeecCC--chhhHHhhhhcCCCCEEEEE------
Q 024671 2 GKAVIKAAD-AAGLELVPVSFGTEEESG-----QKV--EVC-GKEIQVHGLS--DRESVLASVFDKYPNMIVVD------ 64 (264)
Q Consensus 2 G~~i~~~~~-~~~~eLv~~~~~~~~~~g-----~~~--~~~-~~~i~i~~~~--dl~~~l~~~~~~~~d~VvID------ 64 (264)
|+.++..+. .++.+|++...+..+..| ..+ ... ..|+||++.= +..-. .+.. ...|++|+|
T Consensus 14 ~~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~~D~~tglpVySLYG~~~~Pt-~~mL-~~vDvlvfDiQDvG~ 91 (365)
T PF07075_consen 14 GRHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDYIDPRTGLPVYSLYGKTRKPT-PEML-KGVDVLVFDIQDVGV 91 (365)
T ss_pred CcCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCCcCCCCCCeEEECCCCCCCCC-HHHH-hCCCEEEEeCccCCc
Confidence 344566666 458999987664333322 222 111 1256655321 11111 1111 257888899
Q ss_pred --CCChHHHHHHHHHHHhcCCCeEEec-----CCCCHH------HHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHh
Q 024671 65 --YTVPAAVNGNAELYSKVGVPFVMGT-----TGGDRV------RLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQ 131 (264)
Q Consensus 65 --FS~p~~~~~~~~~~~~~g~plViGT-----TG~~~~------~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~ 131 (264)
||--..+...+++|.++|+++||== .|..-+ +.+.+.- ..|+-+--=|.+| ++++...+.
T Consensus 92 R~YTYi~Tl~~~MeAaa~~g~~vvVLDRPNPl~G~~veGp~l~~~~~SFvG--~~~iP~rHGmTiG-----ELA~~~n~e 164 (365)
T PF07075_consen 92 RFYTYISTLYYVMEAAAENGKPVVVLDRPNPLGGRYVEGPILDPEFRSFVG--MYPIPIRHGMTIG-----ELARMFNGE 164 (365)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCCCCccccCCcCcccccccC--CCccccccCCCHH-----HHHHHHHhh
Confidence 5667889999999999999999821 121111 1111111 1333444457777 444444444
Q ss_pred cCCCC-CCCCEEEEeecCCCCCCC-cHHHH
Q 024671 132 FPGAF-SGYSLQVLESHQAGKLDT-SGTAK 159 (264)
Q Consensus 132 l~~~~-~~~dieI~E~HH~~K~Da-SGTAl 159 (264)
.. . ...|.+||.+..-..... .-|.+
T Consensus 165 ~~--~~~~~~L~VI~m~gw~R~m~~~~Tgl 192 (365)
T PF07075_consen 165 FW--LSGKCDLTVIPMEGWRRSMWFDDTGL 192 (365)
T ss_pred cC--CCCCCceEEEeCCCCCCCCCchhcCC
Confidence 42 1 227999999976433333 55555
No 112
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=59.27 E-value=63 Score=29.38 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHhcCC-CeEE---ecCCC-C--H-----HHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCC
Q 024671 67 VPAAVNGNAELYSKVGV-PFVM---GTTGG-D--R-----VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPG 134 (264)
Q Consensus 67 ~p~~~~~~~~~~~~~g~-plVi---GTTG~-~--~-----~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~ 134 (264)
+++-....++++.+.|. .+++ ||+.| . . .-+..+++..+.|+++=|.-|.|.--+...+..+|-.+
T Consensus 144 t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~-- 221 (260)
T TIGR01361 144 TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAA-- 221 (260)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHc--
Confidence 45556667777776665 3555 56655 1 1 23444565566788775556666221112223334444
Q ss_pred CCCCCCEEEEeecCCCC
Q 024671 135 AFSGYSLQVLESHQAGK 151 (264)
Q Consensus 135 ~~~~~dieI~E~HH~~K 151 (264)
+.|--++|.|-.--
T Consensus 222 ---Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 222 ---GADGLMIEVHPDPE 235 (260)
T ss_pred ---CCCEEEEEeCCCcc
Confidence 34666888886543
No 113
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=58.94 E-value=1.1e+02 Score=33.98 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=52.4
Q ss_pred hHHhhhhcCCCCEEEEECC---ChHHHHHHHHHHHhcC--CCeEEecCCCCHHHHHH-HHHccCCcEEEccchhHHHHHH
Q 024671 48 SVLASVFDKYPNMIVVDYT---VPAAVNGNAELYSKVG--VPFVMGTTGGDRVRLHE-TIENSNVYAVISPQMGKQVVAF 121 (264)
Q Consensus 48 ~~l~~~~~~~~d~VvIDFS---~p~~~~~~~~~~~~~g--~plViGTTG~~~~~~~~-l~~~~~~~~v~s~NfSlGv~ll 121 (264)
..++...+.+||.|.+=+. +-....+.++...+.| +|+++|=..++++.-+. +.....-+.+|+.|-+-+|.+.
T Consensus 774 ~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~av~~~ 853 (1178)
T TIGR02082 774 KILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASRAVTVM 853 (1178)
T ss_pred HHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhcCCCceEEEeccccchhHHHhhhhhhccCCeEEecCHHHHHHHH
Confidence 3344445568996566654 3345567777777765 78888888888765443 3222224579999999999888
Q ss_pred HHHHH
Q 024671 122 LAAME 126 (264)
Q Consensus 122 ~~~~~ 126 (264)
.+++.
T Consensus 854 ~~l~~ 858 (1178)
T TIGR02082 854 DTLMS 858 (1178)
T ss_pred HHHhC
Confidence 77663
No 114
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=58.92 E-value=76 Score=26.48 Aligned_cols=68 Identities=9% Similarity=0.144 Sum_probs=37.8
Q ss_pred hhHHhhhhcCCCCEEEEECCChH---HHHHHHHHHHhc--CCCeEEecCCCCH-HHHHHHHHccCCcEEEccchhH
Q 024671 47 ESVLASVFDKYPNMIVVDYTVPA---AVNGNAELYSKV--GVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p~---~~~~~~~~~~~~--g~plViGTTG~~~-~~~~~l~~~~~~~~v~s~NfSl 116 (264)
++++..+....+|.|++|...|. .-.+.++...+. ..|+|+-| +... +...... .++..-++.-.++.
T Consensus 34 ~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls-~~~~~~~~~~~~-~~Ga~~~l~kp~~~ 107 (227)
T TIGR03787 34 PSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT-ARDSDFDTVSGL-RLGADDYLTKDISL 107 (227)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHH-hcCCCEEEECCCCH
Confidence 33444444456898899998885 345666665553 57877766 4443 3332222 34443344444554
No 115
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=58.82 E-value=54 Score=32.40 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=18.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~ 23 (264)
||+.+++.+.+.|++|+. .+++
T Consensus 1 MG~~mA~nL~~~G~~V~v-~nrt 22 (459)
T PRK09287 1 MGKNLALNIASHGYTVAV-YNRT 22 (459)
T ss_pred CcHHHHHHHHhCCCeEEE-ECCC
Confidence 999999999999999873 4543
No 116
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=58.73 E-value=1.1e+02 Score=26.52 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=25.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
+..+....+|.+++-=..++...+.++.+.+.|+|+|.--
T Consensus 49 i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 49 IENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLD 88 (270)
T ss_pred HHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEeC
Confidence 3333345788555543345555677888889999988543
No 117
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=58.59 E-value=55 Score=31.11 Aligned_cols=86 Identities=21% Similarity=0.154 Sum_probs=51.5
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCC--c--------------ccccc--------ccccCceeEeecCCchhhHHhhhhc
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTE--E--------------ESGQK--------VEVCGKEIQVHGLSDRESVLASVFD 55 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~--~--------------~~g~~--------~~~~~~~i~i~~~~dl~~~l~~~~~ 55 (264)
|||...+.+. .++.+|++..+... + ..+.. +.+.+..+.+....|.++. ...+
T Consensus 16 IGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~~p~~~--~w~~ 93 (338)
T PLN02358 16 IGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIRNPEDI--PWGE 93 (338)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcCCcccC--cccc
Confidence 6888888876 57999998766211 0 01101 1122334555544433221 1112
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
...| ++|+.|-.....+.....++.|...|+=+
T Consensus 94 ~gvD-iVie~tG~~~s~~~a~~hl~aGak~ViiS 126 (338)
T PLN02358 94 AGAD-FVVESTGVFTDKDKAAAHLKGGAKKVVIS 126 (338)
T ss_pred cCCC-EEEEcccchhhHHHHHHHHHCCCEEEEeC
Confidence 3577 78998888888888888888887555543
No 118
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=58.33 E-value=1.2e+02 Score=26.23 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=33.3
Q ss_pred hhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHH--hcCCCeEEecCCCCHHHHHHHHH
Q 024671 47 ESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYS--KVGVPFVMGTTGGDRVRLHETIE 102 (264)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~--~~g~plViGTTG~~~~~~~~l~~ 102 (264)
+++++.+....||+|++|.+.|.. -.+.++... .-..++|+=|+--+++......+
T Consensus 36 ~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~ 94 (211)
T COG2197 36 EEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALR 94 (211)
T ss_pred HHHHHHhhhcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHH
Confidence 344555555689999999999952 222222222 23457888777666666555444
No 119
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=58.26 E-value=12 Score=30.13 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCC-HHHHHHHHHccCCcEEEccchhH
Q 024671 68 PAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~plViGTTG~~-~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
++.-.+.++...+.+.|.||=|-|+. ++++.++|+..++|++.++--+-
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~ts 116 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLSTS 116 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS-HH
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcHH
Confidence 45566888899999999999999997 46788899999999999987554
No 120
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=57.68 E-value=22 Score=31.03 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=39.1
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCC-HHHHHHHHHccCCcEEEccch
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQM 114 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~-~~~~~~l~~~~~~~~v~s~Nf 114 (264)
.+-||-+.|+++...+ +.|.+++.=++|+. .+++-.++...+.++|..++-
T Consensus 74 plSIDT~~~~v~~~aL----~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 74 PLSIDTFNPEVAEAAL----KAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEEEEESSHHHHHHHH----HHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred EEEEECCCHHHHHHHH----HcCcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 5899999999877655 45999999999987 556666766677787665443
No 121
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.53 E-value=60 Score=29.64 Aligned_cols=40 Identities=8% Similarity=-0.037 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCc
Q 024671 68 PAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVY 107 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~ 107 (264)
|..+.+.++.+.+.++++|+.-+..+..-.+.|++..+.+
T Consensus 214 ~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~ 253 (286)
T cd01019 214 AKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAK 253 (286)
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCce
Confidence 3444444555555555555555554444444444444433
No 122
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=57.36 E-value=14 Score=34.99 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=19.6
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
.+| -+||+..|+......+++ ..|..+|+-+-|-
T Consensus 202 GAd-~vvdy~~~~~~e~~kk~~-~~~~DvVlD~vg~ 235 (347)
T KOG1198|consen 202 GAD-EVVDYKDENVVELIKKYT-GKGVDVVLDCVGG 235 (347)
T ss_pred CCc-EeecCCCHHHHHHHHhhc-CCCccEEEECCCC
Confidence 355 456666666555555555 5566666655554
No 123
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=57.10 E-value=1.2e+02 Score=28.44 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=39.1
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCHHHHHH
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVRLHE 99 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~~~~~~ 99 (264)
..|....+.++....|| +|+=...+..+...++.+.+.|.. -++|+.++....+..
T Consensus 202 ~~D~~~~v~~l~~~~~d-~v~~~~~~~~~~~~~k~~~~~G~~~~~i~~~~~~~~~~~~ 258 (369)
T PRK15404 202 DKDFSALIAKLKKENVD-FVYYGGYHPEMGQILRQAREAGLKTQFMGPEGVGNKSLSN 258 (369)
T ss_pred CCchHHHHHHHHhcCCC-EEEECCCchHHHHHHHHHHHCCCCCeEEecCcCCCHHHHH
Confidence 34666667777778899 566556566677788999998866 367777765555433
No 124
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=56.87 E-value=23 Score=30.54 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=39.5
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC---CeEEecCCCCH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV---PFVMGTTGGDR 94 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~---plViGTTG~~~ 94 (264)
+....+..+....++ |+|+|+.++.+...++.+.+.|. -..+.++.|..
T Consensus 183 ~~~~~l~~l~~~~~~-viv~~~~~~~~~~~l~~a~~~g~~~~~~~i~~~~~~~ 234 (298)
T cd06269 183 DIRRLLKELKSSTAR-VIVVFSSEEDALRLLEEAVELGMMTGYHWIITDLWLT 234 (298)
T ss_pred HHHHHHHHHHhcCCc-EEEEEechHHHHHHHHHHHHcCCCCCeEEEEEChhhc
Confidence 455566666666778 89999999999999999999987 78888887754
No 125
>PLN03194 putative disease resistance protein; Provisional
Probab=56.75 E-value=61 Score=28.31 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=49.6
Q ss_pred CCCCEEEEECCChHH---HHHHHHHH-HhcCCCeEEecCCCCH-----HHHHHHHHccCCc-EEEccchhHHHHHHHHHH
Q 024671 56 KYPNMIVVDYTVPAA---VNGNAELY-SKVGVPFVMGTTGGDR-----VRLHETIENSNVY-AVISPQMGKQVVAFLAAM 125 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~---~~~~~~~~-~~~g~plViGTTG~~~-----~~~~~l~~~~~~~-~v~s~NfSlGv~ll~~~~ 125 (264)
...| |.|.|..++. ...++..+ .+.|+.+-+--..+.. ..+..-.+.+++. +|+|+|+.-...-|.+++
T Consensus 25 ~~yD-VFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~ 103 (187)
T PLN03194 25 KPCD-VFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA 103 (187)
T ss_pred CCCc-EEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence 4578 8999999874 44555444 5578888776543321 2344445567754 589999998888888887
Q ss_pred HHHH
Q 024671 126 EIMA 129 (264)
Q Consensus 126 ~~aa 129 (264)
+.+.
T Consensus 104 ~I~e 107 (187)
T PLN03194 104 LIME 107 (187)
T ss_pred HHHH
Confidence 7664
No 126
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.03 E-value=1.3e+02 Score=26.30 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=28.1
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.++|.-..++...+.++.+.+.++|+|.=
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 48 IENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred HHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 444445678866775445666778889999999998773
No 127
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=55.82 E-value=45 Score=31.97 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=36.9
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
+++.+.|....+...-+..+++.+.+.+...++.|.+.+.|+++.++-
T Consensus 7 ~~~k~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~ 54 (350)
T PRK09197 7 EDYQEMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSN 54 (350)
T ss_pred HHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCh
Confidence 345555555444455556889999999999999999999999998854
No 128
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=55.62 E-value=1.1e+02 Score=27.44 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=27.2
Q ss_pred hhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 46 RESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 46 l~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
.++.+..+....+|.+++= |.... .+.+....+.++|+|..-.-
T Consensus 45 ~e~~i~~l~~~~vDGiI~~-s~~~~-~~~l~~~~~~~iPvV~~~~~ 88 (279)
T PF00532_consen 45 KEEYIELLLQRRVDGIILA-SSEND-DEELRRLIKSGIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHHTTSSEEEEE-SSSCT-CHHHHHHHHTTSEEEEESS-
T ss_pred HHHHHHHHHhcCCCEEEEe-cccCC-hHHHHHHHHcCCCEEEEEec
Confidence 3355666667789954443 54443 55666666679998876543
No 129
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=55.60 E-value=75 Score=26.24 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=45.5
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+++++.+.+.++++++.+|..+...++.+ .++|+....+ . +..... ..+.++|....+....+.++.+.+
T Consensus 10 ~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i----~g~pvlg~~~--~-l~~~~~-~~~~~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 10 HGRVVADIAEDSGWEIVGFLDDNPALQGTSV----DGLPVLGGDE--D-LLRYPP-DEVDLVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCccccCccc----CCccEECCHH--H-Hhhhcc-cccEEEEEcCCHHHHHHHHHHHHh
Confidence 4788888887789999998885432222221 1455543211 1 222111 223367777777777777777777
Q ss_pred cCCCe
Q 024671 81 VGVPF 85 (264)
Q Consensus 81 ~g~pl 85 (264)
.+.++
T Consensus 82 ~g~~~ 86 (201)
T TIGR03570 82 KGYRF 86 (201)
T ss_pred CCCcc
Confidence 76544
No 130
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=55.53 E-value=76 Score=29.21 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=57.1
Q ss_pred HHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE
Q 024671 8 AADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 8 ~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi 87 (264)
.+.+.|-.+|+++.+.. .| ..-.|.||++ +..++.+ +..+| .-+=|--|..+-.-+..+++.-+|+++
T Consensus 57 q~~eYgTk~VgG~~pkK--~G----t~HLG~PVF~--sV~eA~~---~t~a~-AsvIyVPpp~Aa~aI~eaieaEipLiV 124 (329)
T KOG1255|consen 57 QALEYGTKVVGGVNPKK--GG----TTHLGLPVFN--SVAEAKK---ETGAD-ASVIYVPPPFAAAAIEEAIEAEIPLIV 124 (329)
T ss_pred HHHHhCCceeeccCCCc--Cc----ccccCchhhh--hHHHHHH---hhCCC-ceEEEeCChhHHHHHHHHHhccCCEEE
Confidence 34467888888765321 11 1234667764 4444443 34677 445577788888888999999999998
Q ss_pred ecC-CCCHHHHHHHHHc---cCCcEEEccc
Q 024671 88 GTT-GGDRVRLHETIEN---SNVYAVISPQ 113 (264)
Q Consensus 88 GTT-G~~~~~~~~l~~~---~~~~~v~s~N 113 (264)
+-| |..+.++-+++.. ....=++-||
T Consensus 125 cITEGIPQhDMvrvk~~L~~Q~KtRLvGPN 154 (329)
T KOG1255|consen 125 CITEGIPQHDMVRVKHALNSQSKTRLVGPN 154 (329)
T ss_pred EecCCCchhhHHHHHHHHhhcccceecCCC
Confidence 866 5555555444332 1233355565
No 131
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=55.46 E-value=56 Score=29.31 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=29.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi 87 (264)
+..+....+|.++|.-+.++.+.+.++.+.+.|+|+|+
T Consensus 50 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~ 87 (303)
T cd01539 50 IDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIF 87 (303)
T ss_pred HHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEE
Confidence 44445567897777777777778888999899999986
No 132
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=55.44 E-value=14 Score=28.41 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=17.2
Q ss_pred EEECC-----ChHHHHHHHHHHHhcCCCeEEecCCCCHH
Q 024671 62 VVDYT-----VPAAVNGNAELYSKVGVPFVMGTTGGDRV 95 (264)
Q Consensus 62 vIDFS-----~p~~~~~~~~~~~~~g~plViGTTG~~~~ 95 (264)
+|||| .++.+.+..++|.+.|.=.|++. |.+.+
T Consensus 3 vIDls~~~~~~~~~~~~l~~A~~~~GFf~l~nh-Gi~~~ 40 (116)
T PF14226_consen 3 VIDLSPDPADREEVAEQLRDACEEWGFFYLVNH-GIPQE 40 (116)
T ss_dssp EEEHGGCHHHHHHHHHHHHHHHHHTSEEEEESS-SSSHH
T ss_pred eEECCCCCccHHHHHHHHHHHHHhCCEEEEecc-cccch
Confidence 57777 23444555555555555555544 45443
No 133
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=55.33 E-value=1.5e+02 Score=26.47 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=37.0
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCe-EEecCCCCHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-VMGTTGGDRVRLHE 99 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~pl-ViGTTG~~~~~~~~ 99 (264)
.|....+.++....+|. ||=...+......++.+.+.|... ++|+.++..+.+..
T Consensus 177 ~d~~~~l~~i~~~~~~~-vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 232 (334)
T cd06342 177 TDFSAILTKIKAANPDA-VFFGGYYPEAGPLVRQMRQLGLKAPFMGGDGLCDPEFIK 232 (334)
T ss_pred ccHHHHHHHHHhcCCCE-EEEcCcchhHHHHHHHHHHcCCCCcEEecCccCCHHHHH
Confidence 45666677777778994 554445555667888898888764 67887776555444
No 134
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=55.13 E-value=64 Score=25.26 Aligned_cols=71 Identities=21% Similarity=0.127 Sum_probs=46.8
Q ss_pred CCC--EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHH-------HHHHHHHccCCcE-EEccchhHHHHHHHHHHH
Q 024671 57 YPN--MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRV-------RLHETIENSNVYA-VISPQMGKQVVAFLAAME 126 (264)
Q Consensus 57 ~~d--~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~-------~~~~l~~~~~~~~-v~s~NfSlGv~ll~~~~~ 126 (264)
.+| ..++|.+.++........+.+.++|+++--|-++.. +.+.+.+.-+.++ .+|+.-..|+..++..+.
T Consensus 74 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 74 KPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred CCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 466 457899999887777777888999999999887631 2233443334554 456666666665555443
Q ss_pred H
Q 024671 127 I 127 (264)
Q Consensus 127 ~ 127 (264)
.
T Consensus 154 ~ 154 (158)
T cd01879 154 E 154 (158)
T ss_pred H
Confidence 3
No 135
>PRK06182 short chain dehydrogenase; Validated
Probab=55.00 E-value=63 Score=28.38 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=45.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.++|+++++. .+.. +.+ +++.......+..|.+.++.+...++.+.+
T Consensus 15 iG~~la~~l~~~G~~V~~~-~r~~-------------------~~l----~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGA-ARRV-------------------DKM----EDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHH----HHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 4888998888888888753 2221 011 111111234467899999999888887765
Q ss_pred c--CCCeEEecCCCC
Q 024671 81 V--GVPFVMGTTGGD 93 (264)
Q Consensus 81 ~--g~plViGTTG~~ 93 (264)
. ++.+||-..|..
T Consensus 71 ~~~~id~li~~ag~~ 85 (273)
T PRK06182 71 EEGRIDVLVNNAGYG 85 (273)
T ss_pred hcCCCCEEEECCCcC
Confidence 4 688999888863
No 136
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=54.89 E-value=56 Score=31.00 Aligned_cols=87 Identities=22% Similarity=0.228 Sum_probs=54.5
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCC-----------cccc---cc-------ccccCceeEeecCCchhhHHhhhhcCCC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTE-----------EESG---QK-------VEVCGKEIQVHGLSDRESVLASVFDKYP 58 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~-----------~~~g---~~-------~~~~~~~i~i~~~~dl~~~l~~~~~~~~ 58 (264)
+||.+.+++. ++++|+|+.=+..+ ..-| .+ +.+.+..+.+....|+++. ...+...
T Consensus 13 IGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~--~w~~~gv 90 (331)
T PRK15425 13 IGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANL--KWDEVGV 90 (331)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChhhC--cccccCC
Confidence 4899999876 57899998644110 0001 01 1233445666644444331 1222367
Q ss_pred CEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 59 NMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
| ++|+.|-.....+.....++.|...|+=|.
T Consensus 91 D-iVle~tG~f~s~~~a~~hl~aGak~V~iSa 121 (331)
T PRK15425 91 D-VVAEATGLFLTDETARKHITAGAKKVVMTG 121 (331)
T ss_pred C-EEEEecchhhcHHHHHHHHHCCCEEEEeCC
Confidence 8 899999988888888888888987776553
No 137
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=54.70 E-value=51 Score=29.17 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.5
Q ss_pred hHHHHHHHHhCCCeEEEEEc
Q 024671 2 GKAVIKAADAAGLELVPVSF 21 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~ 21 (264)
|+.|.+.+..+|||+++.+-
T Consensus 13 Gs~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVR 32 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEe
Confidence 88999999999999998654
No 138
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=54.33 E-value=69 Score=27.40 Aligned_cols=74 Identities=8% Similarity=-0.003 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|..++....+... ..++.++++...... .+..|++.++.+.+.++.+
T Consensus 15 iG~~~a~~l~~~G~~vv~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 15 IGTSICQRLHKDGFKVVAGCGPNSP-------------------RRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCChH-------------------HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4888998888888888754321110 111112222222233 1247999999998888877
Q ss_pred Hhc--CCCeEEecCCCC
Q 024671 79 SKV--GVPFVMGTTGGD 93 (264)
Q Consensus 79 ~~~--g~plViGTTG~~ 93 (264)
.+. ++..|+-+.|+.
T Consensus 76 ~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 76 KAEVGEIDVLVNNAGIT 92 (246)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 654 688999888874
No 139
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=54.30 E-value=56 Score=31.15 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=56.1
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCCC--------------ccc-------cccccccCceeEeecCCchhhHHhhhhcCCC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGTE--------------EES-------GQKVEVCGKEIQVHGLSDRESVLASVFDKYP 58 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~~--------------~~~-------g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~ 58 (264)
+||.+.+++. .+++|+|+.=+..+ +.. |..+.+.+..+.+....|+++. ...+...
T Consensus 13 IGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~--~W~~~gv 90 (343)
T PRK07729 13 IGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPKEL--PWTDLGI 90 (343)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChhhC--cccccCC
Confidence 4899999876 57899998643110 000 1112234446777644444332 1222467
Q ss_pred CEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC
Q 024671 59 NMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
| ++++.|-.....+.....++.|...|+=+ ++
T Consensus 91 D-iVle~tG~f~s~~~a~~hl~aGak~V~iS-ap 122 (343)
T PRK07729 91 D-IVIEATGKFNSKEKAILHVEAGAKKVILT-AP 122 (343)
T ss_pred C-EEEEccchhhhHhHHHHHHHcCCeEEEeC-CC
Confidence 8 89999999989999999988898777766 44
No 140
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=54.29 E-value=61 Score=32.09 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.2
Q ss_pred ChHHHHHHHHhCCCeEEEEEcC
Q 024671 1 MGKAVIKAADAAGLELVPVSFG 22 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~ 22 (264)
||+.+++.+.+.|++|.. .++
T Consensus 10 MG~~mA~nL~~~G~~V~v-~dr 30 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSV-YNR 30 (467)
T ss_pred HHHHHHHHHHhcCCeEEE-EeC
Confidence 899999999888998874 443
No 141
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=54.24 E-value=45 Score=33.00 Aligned_cols=50 Identities=4% Similarity=0.106 Sum_probs=36.8
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--CeEEecCCCCH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDR 94 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--plViGTTG~~~ 94 (264)
.|+...+..+....+| |||=|+..+.+...++.+.+.|+ ++.||+.||..
T Consensus 231 ~d~~~~l~klk~~~a~-vVvl~~~~~~~~~ll~qa~~~g~~~~iwI~s~~w~~ 282 (510)
T cd06364 231 EEIQRVVEVIQNSTAK-VIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWAS 282 (510)
T ss_pred HHHHHHHHHHHhcCCe-EEEEEeCcHHHHHHHHHHHHhCCCCcEEEEEchhhc
Confidence 3455566666666788 56667777778888999988776 57789988853
No 142
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=54.07 E-value=58 Score=30.24 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=15.8
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
-.+++.+.+.+...++.|.+.+.|+++.+
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIlq~ 49 (286)
T PRK12738 21 PAFNIHNAETIQAILEVCSEMRSPVILAG 49 (286)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCEEEEc
Confidence 34555555555555555555555555544
No 143
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=54.04 E-value=1.2e+02 Score=28.97 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHhcCCC-eEE---ecCCCC--------HHHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhc
Q 024671 65 YTVPAAVNGNAELYSKVGVP-FVM---GTTGGD--------RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQF 132 (264)
Q Consensus 65 FS~p~~~~~~~~~~~~~g~p-lVi---GTTG~~--------~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l 132 (264)
|++++-...-++++.+.|.+ +++ ||+.|. ..-+..+.+..+.|+++-|--|.|---+...+..+|-.+
T Consensus 235 ~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~ 314 (360)
T PRK12595 235 SATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAI 314 (360)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHc
Confidence 56677777777777776653 333 566432 123445566667888885667777211111222334444
Q ss_pred CCCCCCCCEEEEeecCCCCCCC
Q 024671 133 PGAFSGYSLQVLESHQAGKLDT 154 (264)
Q Consensus 133 ~~~~~~~dieI~E~HH~~K~Da 154 (264)
|.|--++|.|. .|..+
T Consensus 315 -----GAdg~~iE~H~-dp~~a 330 (360)
T PRK12595 315 -----GADGVMAEVHP-DPAVA 330 (360)
T ss_pred -----CCCeEEEEecC-CCCCC
Confidence 35778899988 44444
No 144
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=53.85 E-value=41 Score=31.34 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=23.0
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| ++||.+ .++.+...++.+...|.=+.+|++
T Consensus 259 g~d-~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 259 GVD-YAFEMAGSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred CCC-EEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence 467 788887 356677777777667766667765
No 145
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=53.57 E-value=26 Score=31.34 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+ +++.-...-++|.++++|+|.|.+
T Consensus 114 ~~D-lVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 114 EHD-IVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred cCC-EEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 467 788876 555555566778888888888653
No 146
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=53.38 E-value=39 Score=27.91 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=34.6
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
||+.+++.+...|++|.. .+..+... +. ....++... ++++++.+ .+|+|++=.+.++++.+.+..
T Consensus 12 mG~~~a~~L~~~g~~v~~-~d~~~~~~-~~--~~~~g~~~~--~s~~e~~~-----~~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTV-YDRSPEKA-EA--LAEAGAEVA--DSPAEAAE-----QADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp HHHHHHHHHHHTTTEEEE-EESSHHHH-HH--HHHTTEEEE--SSHHHHHH-----HBSEEEE-SSSHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCeEEe-eccchhhh-hh--hHHhhhhhh--hhhhhHhh-----cccceEeecccchhhhhhhhh
Confidence 899999999888999874 45432111 00 001122221 34444433 246444445666666666554
No 147
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.37 E-value=63 Score=27.92 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=25.3
Q ss_pred hcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 54 ~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
....+|.++|.-..++...+.++.+.+.|+|+|.-
T Consensus 52 ~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 52 IDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred HhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE
Confidence 33578865666555666678889999999998843
No 148
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=53.18 E-value=1e+02 Score=27.47 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=43.0
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec-CCCCHHHHHHHHHccCCcEEEccchhH
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT-TGGDRVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT-TG~~~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
...+.+=|=|++|.+....-..+.+.+ ...||+ |=++.+|.++..+ ++--.++|||+.-
T Consensus 37 gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~-aGa~fiVsP~~~~ 96 (211)
T COG0800 37 GGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIA-AGAQFIVSPGLNP 96 (211)
T ss_pred cCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHH-cCCCEEECCCCCH
Confidence 345545577788888777777777777 788886 3378888776654 5677899999876
No 149
>PRK06139 short chain dehydrogenase; Provisional
Probab=52.91 E-value=73 Score=29.60 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=46.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|..|+.. ++.. +.+++..+++.....+ .+..|+|.++.+.+.++.+
T Consensus 19 IG~aia~~la~~G~~Vvl~-~R~~-------------------~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 19 IGQATAEAFARRGARLVLA-ARDE-------------------EALQAVAEECRALGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCH-------------------HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 4888998888888887743 3221 1122222222222233 3467999999999998887
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++.++|-..|.
T Consensus 79 ~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 79 ASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHhcCCCCEEEECCCc
Confidence 764 57888888884
No 150
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=52.71 E-value=47 Score=31.39 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=40.7
Q ss_pred CchhhHHhhhhcC--CCCEEEEECCCh--HHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHccCCcEE
Q 024671 44 SDRESVLASVFDK--YPNMIVVDYTVP--AAVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIENSNVYAV 109 (264)
Q Consensus 44 ~dl~~~l~~~~~~--~~d~VvIDFS~p--~~~~~~~~~~~~~--g~plViGTTG~~~~~~~~l~~~~~~~~v 109 (264)
++.+++ ..+.+. .+|.++||-|++ +.+.+.++...+. ++|++.|+.+ +.++...+.++ +.-.+
T Consensus 97 ~~~~~~-~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~a-Gad~i 165 (326)
T PRK05458 97 DEYDFV-DQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENA-GADAT 165 (326)
T ss_pred HHHHHH-HHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHc-CcCEE
Confidence 344444 344444 349889999998 5677777777653 4889998777 67666666553 44433
No 151
>PLN02700 homoserine dehydrogenase family protein
Probab=52.49 E-value=1.1e+02 Score=29.66 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=50.8
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC---CHHHHHHHHHccCCcEEEccchhHHHHHHHHH
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG---DRVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~---~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~ 124 (264)
..+ |+||-|.-..+.++++.++++|+.+|..--+. ..+++.++++ .+..+.|.+|..=|.-++..+
T Consensus 109 ~~~-ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-~~~~~~yEatVgaGlPiI~tl 177 (377)
T PLN02700 109 TGL-VVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-HPRRIRHESTVGAGLPVIASL 177 (377)
T ss_pred CCC-EEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-cCCeEEEEeeeeeccchHHHH
Confidence 356 89999988888899999999999999876554 2346666764 467888999888786665543
No 152
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=52.41 E-value=55 Score=29.00 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCC-----------hH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV-----------PA 69 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~-----------p~ 69 (264)
.|+.+++.+.+.|++++....... .++...++++.+++ ...+| +||.+.. |.
T Consensus 9 iG~~l~~~L~~~g~~v~~~~~~~~-------------~Dl~~~~~l~~~~~---~~~~d-~Vih~A~~~~~~~~~~~~~~ 71 (306)
T PLN02725 9 VGSAIVRKLEALGFTNLVLRTHKE-------------LDLTRQADVEAFFA---KEKPT-YVILAAAKVGGIHANMTYPA 71 (306)
T ss_pred ccHHHHHHHHhCCCcEEEeecccc-------------CCCCCHHHHHHHHh---ccCCC-EEEEeeeeecccchhhhCcH
Confidence 488999998877877664322111 11222223333333 23578 7898842 22
Q ss_pred --------HHHHHHHHHHhcCCC-eEEecC
Q 024671 70 --------AVNGNAELYSKVGVP-FVMGTT 90 (264)
Q Consensus 70 --------~~~~~~~~~~~~g~p-lViGTT 90 (264)
.+...++.|.+++++ +|...|
T Consensus 72 ~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 72 DFIRENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHHHHHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 355678888888865 555433
No 153
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=52.22 E-value=30 Score=31.33 Aligned_cols=88 Identities=16% Similarity=0.079 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCc-cccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEE-ESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~-~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
+|+++++.+...|.++++...+..+ ..-+..+. ..-+.....++.++.+........| +++|++-.+.+...++...
T Consensus 151 vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa-~~vi~~~~~~~~~~~~~~~~~~gvd-vv~d~~G~~~~~~~~~~l~ 228 (325)
T TIGR02825 151 VGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF-DVAFNYKTVKSLEETLKKASPDGYD-CYFDNVGGEFSNTVIGQMK 228 (325)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC-CEEEeccccccHHHHHHHhCCCCeE-EEEECCCHHHHHHHHHHhC
Confidence 4777777777778776643221110 00011111 0001111112333333332222356 6788777666666666555
Q ss_pred hcCCCeEEecC
Q 024671 80 KVGVPFVMGTT 90 (264)
Q Consensus 80 ~~g~plViGTT 90 (264)
..|.=+.+|+.
T Consensus 229 ~~G~iv~~G~~ 239 (325)
T TIGR02825 229 KFGRIAICGAI 239 (325)
T ss_pred cCcEEEEecch
Confidence 56665666653
No 154
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=52.18 E-value=51 Score=30.95 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=31.8
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecCCCC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTTGGD 93 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTTG~~ 93 (264)
.+| ++||.| +|.++...++.+...|.-+++|++|-.
T Consensus 238 g~D-~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 238 GAD-VVIEAVGSPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCC-EEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 588 799999 677788999999999999999999876
No 155
>CHL00194 ycf39 Ycf39; Provisional
Probab=52.16 E-value=60 Score=29.55 Aligned_cols=81 Identities=9% Similarity=-0.008 Sum_probs=42.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcccc-ccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCCh-----------
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESG-QKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP----------- 68 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g-~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p----------- 68 (264)
.|+.+++.+.++|+++.+..-+.....- ...++.-...++..++++..++ ..+| +||....+
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al-----~g~d-~Vi~~~~~~~~~~~~~~~~ 85 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSF-----KGVT-AIIDASTSRPSDLYNAKQI 85 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHH-----CCCC-EEEECCCCCCCCccchhhh
Confidence 3899999988889998865422111000 0001000011122222333333 2578 78887532
Q ss_pred --HHHHHHHHHHHhcCCCeEE
Q 024671 69 --AAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 69 --~~~~~~~~~~~~~g~plVi 87 (264)
++....+++|.+.|+.-+|
T Consensus 86 ~~~~~~~l~~aa~~~gvkr~I 106 (317)
T CHL00194 86 DWDGKLALIEAAKAAKIKRFI 106 (317)
T ss_pred hHHHHHHHHHHHHHcCCCEEE
Confidence 2346678888889976443
No 156
>PLN02417 dihydrodipicolinate synthase
Probab=52.09 E-value=49 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCC--eEEecCC----CCHHHHHH
Q 024671 69 AAVNGNAELYSKVGVP--FVMGTTG----GDRVRLHE 99 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~p--lViGTTG----~~~~~~~~ 99 (264)
+++.++++++++.|+. +|.|||| ++.+|..+
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~ 58 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIM 58 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHH
Confidence 5677777777777776 4467877 35554433
No 157
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=52.01 E-value=1.4e+02 Score=26.74 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=38.0
Q ss_pred CCCEEEEECCChHHHHHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccc
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~N 113 (264)
.+| +||=...|..+.+.++.... .+..+|+-..|.+.+.++.+.......+-+-||
T Consensus 57 ~~D-~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn 114 (260)
T PTZ00431 57 TCD-IIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPN 114 (260)
T ss_pred hCC-EEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCC
Confidence 578 56666899998888887654 245789999999988877764322122234555
No 158
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=51.69 E-value=1.4e+02 Score=24.91 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=24.7
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
+..+....+|.+|+-...+.... .++.+.+.++|+|...
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~~ip~v~~~ 86 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT-IVKLARKAGIPVVLVD 86 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh-HHHHhhhcCCCEEEec
Confidence 33344456885455444455444 6888888999998753
No 159
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=51.28 E-value=51 Score=31.65 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=40.0
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
.+++.+.|....+...-+..+++.+.+.+...++.|.+.+.|+++.++-.
T Consensus 12 ~~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~ 61 (357)
T TIGR01520 12 GDDVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNG 61 (357)
T ss_pred HHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 35666666665555555678999999999999999999999999998653
No 160
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=51.20 E-value=70 Score=28.37 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=54.7
Q ss_pred ChHHHHHHHHhCCCeE--EEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLEL--VPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eL--v~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
||+.+++.+.+.++.+ +.+.++..... +.......++.+. ++.+++.+ .+| +||=-+.|+.+.+.++..
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~-~~l~~~~~~~~~~--~~~~~~~~-----~aD-vVilav~p~~~~~vl~~l 81 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIA-ARLAERFPKVRIA--KDNQAVVD-----RSD-VVFLAVRPQIAEEVLRAL 81 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHH-HHHHHHcCCceEe--CCHHHHHH-----hCC-EEEEEeCHHHHHHHHHHh
Confidence 7899998887655433 22333322111 1110000023332 34433332 478 566666688888877654
Q ss_pred H-hcCCCeEEecCCCCHHHHHHHHHccCCcEEEccc
Q 024671 79 S-KVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 79 ~-~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~N 113 (264)
. ..+.-+|.-..|.+.++++.+......++...||
T Consensus 82 ~~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~ 117 (258)
T PRK06476 82 RFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPL 117 (258)
T ss_pred ccCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCC
Confidence 2 2344566655667788888776543344455565
No 161
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=51.20 E-value=70 Score=27.46 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=16.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEc
Q 024671 1 MGKAVIKAADAAGLELVPVSF 21 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~ 21 (264)
.|+.+++.+.+.++++.+.+-
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R 30 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVR 30 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEES
T ss_pred HHHHHHHHHHhCCCCcEEEEe
Confidence 388999998888899887543
No 162
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=51.15 E-value=22 Score=28.31 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=17.1
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+| +|||.+ +++.-...-++|.++++|++.+.
T Consensus 92 ~~d-~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 92 DYD-IVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp TSS-EEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCC-EEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 456 566655 34444455556666666666544
No 163
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=51.06 E-value=1.4e+02 Score=27.21 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~ 23 (264)
||+.+++.+.+.|++|.. .++.
T Consensus 11 MG~~mA~~L~~~g~~v~v-~dr~ 32 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVG-YDRN 32 (301)
T ss_pred HHHHHHHHHHHCCCeEEE-EECC
Confidence 899999998888999864 4543
No 164
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=51.05 E-value=60 Score=29.17 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=6.8
Q ss_pred CCCeEEecCCCCH
Q 024671 82 GVPFVMGTTGGDR 94 (264)
Q Consensus 82 g~plViGTTG~~~ 94 (264)
++|+++|+++.+.
T Consensus 66 ~~~vi~gv~~~~~ 78 (281)
T cd00408 66 RVPVIAGVGANST 78 (281)
T ss_pred CCeEEEecCCccH
Confidence 4555555555443
No 165
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=50.85 E-value=70 Score=29.65 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=17.2
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
..+++.+.+.+...++.|.+.+.|+++.++
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIiq~~ 50 (284)
T PRK09195 21 PAFNIHNLETMQVVVETAAELHSPVIIAGT 50 (284)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 355555555666666666666666665553
No 166
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=50.79 E-value=1.5e+02 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 49 VLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
.+..+....+|.|++--+.+....+.++.+.+.++|+|.-
T Consensus 47 ~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 47 DIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEE
Confidence 3444444568854553233444566778888889998854
No 167
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=50.59 E-value=64 Score=29.36 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=7.1
Q ss_pred CCCeEEecCCCCH
Q 024671 82 GVPFVMGTTGGDR 94 (264)
Q Consensus 82 g~plViGTTG~~~ 94 (264)
++|+++|+++.+.
T Consensus 70 ~~~vi~gv~~~~~ 82 (292)
T PRK03170 70 RVPVIAGTGSNST 82 (292)
T ss_pred CCcEEeecCCchH
Confidence 4566666655543
No 168
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.55 E-value=1.7e+02 Score=26.10 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=25.1
Q ss_pred HhhhhcC--CCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDK--YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+... .+|.++| ++......+.++.+.+.|+|+|+-
T Consensus 49 i~~~~~~~~~vdgiIi-~~~~~~~~~~~~~~~~~giPvV~~ 88 (305)
T cd06324 49 ARTILQRPDKPDALIF-TNEKSVAPELLRLAEGAGVKLFLV 88 (305)
T ss_pred HHHHHHhccCCCEEEE-cCCccchHHHHHHHHhCCCeEEEE
Confidence 3344445 7886566 544334566788899999998854
No 169
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=50.39 E-value=93 Score=27.55 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=52.1
Q ss_pred ChHHHHHHHHhCC---CeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAG---LELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~---~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
||+.+++.+.+.+ .++ ..+++.+... +.+ ....++.+. .+.++.++ .+| +||=-+.|..+.+.++.
T Consensus 13 mG~~la~~l~~~g~~~~~v-~v~~r~~~~~-~~~-~~~~g~~~~--~~~~~~~~-----~ad-vVil~v~~~~~~~v~~~ 81 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDI-IVSDPSPEKR-AAL-AEEYGVRAA--TDNQEAAQ-----EAD-VVVLAVKPQVMEEVLSE 81 (267)
T ss_pred HHHHHHHHHHhCCCCcceE-EEEcCCHHHH-HHH-HHhcCCeec--CChHHHHh-----cCC-EEEEEcCHHHHHHHHHH
Confidence 7888888877555 333 3445432211 000 000123332 34333332 578 66767788888888887
Q ss_pred HHhc-CCCeEEecCCCCHHHHHHHH
Q 024671 78 YSKV-GVPFVMGTTGGDRVRLHETI 101 (264)
Q Consensus 78 ~~~~-g~plViGTTG~~~~~~~~l~ 101 (264)
+... +..+|.-+.|.+.++++.+.
T Consensus 82 l~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 82 LKGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HHhhcCCEEEEecCCCCHHHHHHhc
Confidence 7654 45678888888877777654
No 170
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=49.48 E-value=68 Score=27.81 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=27.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
+..+....+|.++|.-..++...+.++.+.+.++|+|.--+
T Consensus 48 i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 48 IRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEec
Confidence 44444457886677655566556778888899999876543
No 171
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.45 E-value=68 Score=27.85 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=25.7
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi 87 (264)
++.+....+|.++|-=+.++.+.+.++.+.+.|+|+|+
T Consensus 48 i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~ 85 (282)
T cd06318 48 VEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVV 85 (282)
T ss_pred HHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEE
Confidence 44445567895455323456667788888999999884
No 172
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=49.34 E-value=1.9e+02 Score=25.52 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=65.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcccccccc--ccCceeEeecCCchhhHHhhhhcCCCCEEEEECCC-hHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVE--VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV-PAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~--~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~-p~~~~~~~~~ 77 (264)
+|+.+++.+.+.|++++.. +..+...-+... .....+..++ .| +.+|.++--..+|.+++.-.+ .....-+.-.
T Consensus 11 vG~~va~~L~~~g~~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~-t~-~~~L~~agi~~aD~vva~t~~d~~N~i~~~la 87 (225)
T COG0569 11 VGRSVARELSEEGHNVVLI-DRDEERVEEFLADELDTHVVIGDA-TD-EDVLEEAGIDDADAVVAATGNDEVNSVLALLA 87 (225)
T ss_pred HHHHHHHHHHhCCCceEEE-EcCHHHHHHHhhhhcceEEEEecC-CC-HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHH
Confidence 5889999999999999864 432211111000 1111222222 22 334555544567855555555 3334444444
Q ss_pred HHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHHHHHHHH
Q 024671 78 YSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (264)
Q Consensus 78 ~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~ 124 (264)
+.++|+|-|+..+- +++..+.+. .-++-.+++|=...|-.+...+
T Consensus 88 ~~~~gv~~viar~~-~~~~~~~~~-~~g~~~ii~Pe~~~~~~l~~~i 132 (225)
T COG0569 88 LKEFGVPRVIARAR-NPEHEKVLE-KLGADVIISPEKLAAKRLARLI 132 (225)
T ss_pred HHhcCCCcEEEEec-CHHHHHHHH-HcCCcEEECHHHHHHHHHHHHh
Confidence 44589999998863 333333333 3346678899888887554443
No 173
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.27 E-value=1.5e+02 Score=27.13 Aligned_cols=88 Identities=9% Similarity=0.124 Sum_probs=48.6
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcc---ccc---ccc-ccCcee--EeecCCchhhHHhhhhcCCCCEEEEECCChHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEE---SGQ---KVE-VCGKEI--QVHGLSDRESVLASVFDKYPNMIVVDYTVPAAV 71 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~---~g~---~~~-~~~~~i--~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~ 71 (264)
||..++..+.+.|+++. .+.+.... +.. ... ..+..+ .+....++++.+. ..+| ++|=++.+..+
T Consensus 11 ~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~D-liiiavks~~~ 84 (326)
T PRK14620 11 FGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS----DNAT-CIILAVPTQQL 84 (326)
T ss_pred HHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh----CCCC-EEEEEeCHHHH
Confidence 78889888877787775 34432210 000 000 111101 1112245444331 2468 67877777777
Q ss_pred HHHHHHHHh----cCCCeEEecCCCCH
Q 024671 72 NGNAELYSK----VGVPFVMGTTGGDR 94 (264)
Q Consensus 72 ~~~~~~~~~----~g~plViGTTG~~~ 94 (264)
.+.++.... .+.++|+.+-|+..
T Consensus 85 ~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 85 RTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 777776554 35679999999954
No 174
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=49.25 E-value=78 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=15.0
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
-.+++.+.+.+...++.|.+.+.|+++.++
T Consensus 21 ~Afn~~n~e~~~avi~aAe~~~~Pvii~~~ 50 (281)
T PRK06806 21 GAFSVANMEMVMGAIKAAEELNSPIILQIA 50 (281)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 344444555555555555555555555443
No 175
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.98 E-value=92 Score=27.15 Aligned_cols=72 Identities=7% Similarity=0.100 Sum_probs=45.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+++++...++|..|+.. .+.. ..++.++++.......+-.|+|.++.+.+.++.+.+
T Consensus 21 IG~a~a~~la~~G~~Vi~~-~r~~--------------------~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYT-YQND--------------------RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred hHHHHHHHHHHCCCEEEEe-cCch--------------------HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 5888998888888887743 2211 011112222111223356899999999999988776
Q ss_pred c--CCCeEEecCCCC
Q 024671 81 V--GVPFVMGTTGGD 93 (264)
Q Consensus 81 ~--g~plViGTTG~~ 93 (264)
. ++.++|-..|+.
T Consensus 80 ~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 80 RVGKIDGIVHAIAYA 94 (252)
T ss_pred HhCCCCEEEEccccc
Confidence 3 478888877763
No 176
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.55 E-value=87 Score=28.56 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHHHHhcCCC-eEE---ecCCCCHH--------HHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhc
Q 024671 65 YTVPAAVNGNAELYSKVGVP-FVM---GTTGGDRV--------RLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQF 132 (264)
Q Consensus 65 FS~p~~~~~~~~~~~~~g~p-lVi---GTTG~~~~--------~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l 132 (264)
|.+++-....++++.+.|.+ +++ ||+||... .+..+.+..+.|+++-|.-|.|..-+...+..+|-.+
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~ 211 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAV 211 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHh
Confidence 66677777777777776654 332 67777421 2344555566777775557777532222333344344
Q ss_pred CCCCCCCCEEEEeecCCCCC
Q 024671 133 PGAFSGYSLQVLESHQAGKL 152 (264)
Q Consensus 133 ~~~~~~~dieI~E~HH~~K~ 152 (264)
+.|==++|.|..-.+
T Consensus 212 -----GAdGl~IE~H~~P~~ 226 (250)
T PRK13397 212 -----GANGIMMEVHPDPDH 226 (250)
T ss_pred -----CCCEEEEEecCCccc
Confidence 345557888876544
No 177
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.49 E-value=1.8e+02 Score=25.06 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=28.7
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
+..+....+|.++|.-+.++...+.++.+.+.++|+|+--.
T Consensus 50 i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~ 90 (271)
T cd06321 50 IDNFIAAKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDV 90 (271)
T ss_pred HHHHHHhCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecC
Confidence 33434457886677555566667888888899999887654
No 178
>PLN02778 3,5-epimerase/4-reductase
Probab=48.44 E-value=1.2e+02 Score=27.64 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.1
Q ss_pred ChHHHHHHHHhCCCeEEE
Q 024671 1 MGKAVIKAADAAGLELVP 18 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~ 18 (264)
.|+.+++.+.++|++++.
T Consensus 21 iG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 21 IGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 388889888888888763
No 179
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=48.20 E-value=77 Score=29.26 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=24.1
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecCC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTTG 91 (264)
.+| ++||++. ++.+...++.+...|.=+++|.++
T Consensus 245 g~d-~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~ 279 (358)
T TIGR03451 245 GAD-VVIDAVGRPETYKQAFYARDLAGTVVLVGVPT 279 (358)
T ss_pred CCC-EEEECCCCHHHHHHHHHHhccCCEEEEECCCC
Confidence 467 7888886 567777777766677767777653
No 180
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=48.07 E-value=2.3e+02 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=33.8
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCC
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGG 92 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~ 92 (264)
.|....+..+....|| +|+=...+......++.+.+.|.+ .++|+++.
T Consensus 182 ~D~~~~v~~i~~~~pd-~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 230 (351)
T cd06334 182 NDQKAQWLQIRRSGPD-YVILWGWGVMNPVAIKEAKRVGLDDKFIGNWWS 230 (351)
T ss_pred ccHHHHHHHHHHcCCC-EEEEecccchHHHHHHHHHHcCCCceEEEeecc
Confidence 4667777777778899 566666666777889999988874 44454443
No 181
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=47.83 E-value=80 Score=29.88 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=37.2
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--CeEEecCCCCH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDR 94 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--plViGTTG~~~ 94 (264)
.|....+.++....|| +||=++.++.....++.+.+.|. ++.+||.||..
T Consensus 221 ~d~~~~l~~i~~~~~d-vIil~~~~~~~~~il~qa~~~g~~~~~~i~~~~~~~ 272 (410)
T cd06363 221 TDYQQILKQINQTKVN-VIVVFASRQPAEAFFNSVIQQNLTGKVWIASEAWSL 272 (410)
T ss_pred HHHHHHHHHHhcCCCe-EEEEEcChHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 4667777777777889 45556666667788999988776 36789989864
No 182
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=47.55 E-value=31 Score=31.44 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhcCCC--eEEecCC
Q 024671 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~p--lViGTTG 91 (264)
+.+.+++++..+.|+. +|.||||
T Consensus 20 ~~~~~li~~l~~~Gv~Gl~~~GstG 44 (279)
T cd00953 20 EKFKKHCENLISKGIDYVFVAGTTG 44 (279)
T ss_pred HHHHHHHHHHHHcCCcEEEEcccCC
Confidence 3444455555555544 2335555
No 183
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=47.15 E-value=1.5e+02 Score=26.79 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=53.3
Q ss_pred ChHHHHHHHHhCC----CeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHH
Q 024671 1 MGKAVIKAADAAG----LELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~~~~----~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (264)
||+.+++.+.+.+ ++++. +++..+..-+.......++.+ ..+.++++. .+| ++|=-..|..+.+.++
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~-~~r~~~~~~~~l~~~~~~~~~--~~~~~e~~~-----~aD-vVilavpp~~~~~vl~ 82 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIIL-YSSSKNEHFNQLYDKYPTVEL--ADNEAEIFT-----KCD-HSFICVPPLAVLPLLK 82 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEE-EeCCcHHHHHHHHHHcCCeEE--eCCHHHHHh-----hCC-EEEEecCHHHHHHHHH
Confidence 7899998887555 56664 333221100000000001222 124333332 578 6787777888888777
Q ss_pred HHH---hcCCCeEEecCCCCHHHHHHHH
Q 024671 77 LYS---KVGVPFVMGTTGGDRVRLHETI 101 (264)
Q Consensus 77 ~~~---~~g~plViGTTG~~~~~~~~l~ 101 (264)
.+. +.+..+|+-+-|++.+++++..
T Consensus 83 ~l~~~l~~~~~ivS~~aGi~~~~l~~~~ 110 (277)
T PRK06928 83 DCAPVLTPDRHVVSIAAGVSLDDLLEIT 110 (277)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 664 3567889999999988887754
No 184
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=47.06 E-value=1.2e+02 Score=22.72 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=41.7
Q ss_pred hHHhhhhcC-CCCEEEEECCChH-HHHHHHHHHHh--cCCCeEEecCCCCHHHH-HHHHHccCCcEEEccchhHH
Q 024671 48 SVLASVFDK-YPNMIVVDYTVPA-AVNGNAELYSK--VGVPFVMGTTGGDRVRL-HETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 48 ~~l~~~~~~-~~d~VvIDFS~p~-~~~~~~~~~~~--~g~plViGTTG~~~~~~-~~l~~~~~~~~v~s~NfSlG 117 (264)
+++..+... .+|.|++|+..|. .-.+.++...+ ..+| |+-.||...... ....+....+.+.-|.+..-
T Consensus 41 ~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p-vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 114 (130)
T COG0784 41 EALELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIP-VILLTAYADEADRERALAAGADDYLTKPIFLEE 114 (130)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC-EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHH
Confidence 556666555 3898899999993 23555555555 3788 588888876542 22222222556777755443
No 185
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=46.97 E-value=1.3e+02 Score=25.44 Aligned_cols=72 Identities=8% Similarity=0.176 Sum_probs=40.3
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChH----HHHHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPA----AVNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~----~~~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
++.++++..+....||.|++|...|. .-.+.++...+ ..+|+|+=|.--+.+...... ..+.--+++-+++.
T Consensus 36 ~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~-~~Ga~~yl~K~~~~ 113 (216)
T PRK10840 36 EDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVL-DLDIEGIVLKQGAP 113 (216)
T ss_pred CCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHH-HCCCeEEEECCCCH
Confidence 34555565555567898899988775 34555555544 346666665444444333333 34544445555554
No 186
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=46.95 E-value=82 Score=28.90 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCC--eEEecCC
Q 024671 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~p--lViGTTG 91 (264)
+++..+++++.+.|+. +|.||||
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~GstG 45 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVGGTSG 45 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCc
Confidence 4566666666666665 3456666
No 187
>PRK10206 putative oxidoreductase; Provisional
Probab=46.95 E-value=88 Score=29.28 Aligned_cols=104 Identities=12% Similarity=0.021 Sum_probs=60.4
Q ss_pred CCCeEEEEEcCCCccccccccccCc-eeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 12 AGLELVPVSFGTEEESGQKVEVCGK-EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 12 ~~~eLv~~~~~~~~~~g~~~~~~~~-~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
++++|+++.+..+.. ..... .. +++++ +|.++.|++ ..+| +|+=-|-+..=.+.+..|+++|+++.+=-.
T Consensus 26 ~~~~l~av~d~~~~~-~~~~~--~~~~~~~~--~~~~ell~~---~~iD-~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 96 (344)
T PRK10206 26 DSWHVAHIFRRHAKP-EEQAP--IYSHIHFT--SDLDEVLND---PDVK-LVVVCTHADSHFEYAKRALEAGKNVLVEKP 96 (344)
T ss_pred CCEEEEEEEcCChhH-HHHHH--hcCCCccc--CCHHHHhcC---CCCC-EEEEeCCchHHHHHHHHHHHcCCcEEEecC
Confidence 579999887754321 11010 01 13333 466666642 3578 556677777788999999999999987432
Q ss_pred C-CCHHH---HHHHHHccCCcEEEccc--hhHHHHHHHHH
Q 024671 91 G-GDRVR---LHETIENSNVYAVISPQ--MGKQVVAFLAA 124 (264)
Q Consensus 91 G-~~~~~---~~~l~~~~~~~~v~s~N--fSlGv~ll~~~ 124 (264)
= .+.++ +.+++++++..+....| |+=.+..+.++
T Consensus 97 la~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~l 136 (344)
T PRK10206 97 FTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKA 136 (344)
T ss_pred CcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHH
Confidence 2 23343 44456666666666666 44334334443
No 188
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=46.94 E-value=1.2e+02 Score=29.57 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=35.4
Q ss_pred chhhHHhhhhc-CCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCC
Q 024671 45 DRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGD 93 (264)
Q Consensus 45 dl~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~ 93 (264)
|....+.++.. ..+| |||=|+.++.+...++.+.+.|+. ..+||.||.
T Consensus 219 d~~~~l~~l~~~~~a~-vVvl~~~~~~~~~ll~~a~~~g~~~~wigs~~~~ 268 (458)
T cd06375 219 SYDSVIRKLLQKPNAR-VVVLFTRSEDARELLAAAKRLNASFTWVASDGWG 268 (458)
T ss_pred HHHHHHHHHhccCCCE-EEEEecChHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 44455555432 4678 566677788889999999998876 788999995
No 189
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=46.75 E-value=34 Score=32.20 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhh---cCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVF---DKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~---~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
.||+.++....+|+.++- +.++.+ .|+.+-+++. ......+++||+.|+..++.++.
T Consensus 61 IGKayA~eLAkrG~nvvL-IsRt~~-------------------KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~ 120 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVL-ISRTQE-------------------KLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLE 120 (312)
T ss_pred chHHHHHHHHHcCCEEEE-EeCCHH-------------------HHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHH
Confidence 488888888889998764 333322 1221112211 12233579999999987666655
Q ss_pred H-HhcCCCeEEecCCCCH
Q 024671 78 Y-SKVGVPFVMGTTGGDR 94 (264)
Q Consensus 78 ~-~~~g~plViGTTG~~~ 94 (264)
. ....+-+.|=--|-..
T Consensus 121 ~l~~~~VgILVNNvG~~~ 138 (312)
T KOG1014|consen 121 KLAGLDVGILVNNVGMSY 138 (312)
T ss_pred HhcCCceEEEEecccccC
Confidence 4 4456777776666543
No 190
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=46.68 E-value=33 Score=30.76 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=22.0
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+ +++.-...-++|.++++|+|.|.+
T Consensus 122 ~~D-iVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 122 GHD-LVLDCTDNVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred cCC-EEEecCCCHHHHHHHHHHHHHhCCEEEEeee
Confidence 467 677777 444444466677788888887654
No 191
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.40 E-value=47 Score=26.57 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=19.1
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| ++||.+ +++.....-++|.++++|++.+-|
T Consensus 89 ~~d-iVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 89 GVD-LVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 456 566665 334445555666777777665433
No 192
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=46.35 E-value=2.4e+02 Score=26.80 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=59.6
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccc--------cccCc--eeEeecCCchhhHHhhhhcCCCCEEEEECCChHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV--------EVCGK--EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAA 70 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~--------~~~~~--~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~ 70 (264)
+|.+++..+.+.++++.-- ...+. .-.++ .+++. +-.+..+.|++++++ .+|. |=|..|..
T Consensus 12 wGTALA~~la~ng~~V~lw-~r~~~-~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~-----~ad~--iv~avPs~ 82 (329)
T COG0240 12 WGTALAKVLARNGHEVRLW-GRDEE-IVAEINETRENPKYLPGILLPPNLKATTDLAEALD-----GADI--IVIAVPSQ 82 (329)
T ss_pred HHHHHHHHHHhcCCeeEEE-ecCHH-HHHHHHhcCcCccccCCccCCcccccccCHHHHHh-----cCCE--EEEECChH
Confidence 4888888888888777632 21110 00000 11111 223445678888775 4782 33455543
Q ss_pred -HHHHHHH---HHhcCCCeEEecCCCCHHH---HHHH-HHc-cC--CcEEEccchhHHH
Q 024671 71 -VNGNAEL---YSKVGVPFVMGTTGGDRVR---LHET-IEN-SN--VYAVISPQMGKQV 118 (264)
Q Consensus 71 -~~~~~~~---~~~~g~plViGTTG~~~~~---~~~l-~~~-~~--~~~v~s~NfSlGv 118 (264)
+.+.++. ....+.++|+.|=|+.++- +.++ .+. .. +.++--|||+-=|
T Consensus 83 ~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EV 141 (329)
T COG0240 83 ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEV 141 (329)
T ss_pred HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHH
Confidence 3444444 4578999999999997642 2222 222 22 4446678887644
No 193
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=46.29 E-value=1.7e+02 Score=27.89 Aligned_cols=120 Identities=9% Similarity=0.079 Sum_probs=60.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCC-chhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLS-DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~-dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
+|+.+++.+.+.|++++. ++..+... +.+. ...++++...+ .-...+.+..-..+|.|++-....+.-......|.
T Consensus 11 ig~~~a~~L~~~g~~v~v-id~~~~~~-~~~~-~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r 87 (453)
T PRK09496 11 VGYTLAENLSGENNDVTV-IDTDEERL-RRLQ-DRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNMVACQIAK 87 (453)
T ss_pred HHHHHHHHHHhCCCcEEE-EECCHHHH-HHHH-hhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHH
Confidence 588899888878898874 45332111 0000 00112221111 11223443323457844554445454444445566
Q ss_pred hc-CCCeEEecCCCCHH-HHHHHH--HccCCcEEEccchhHHHHHHHH
Q 024671 80 KV-GVPFVMGTTGGDRV-RLHETI--ENSNVYAVISPQMGKQVVAFLA 123 (264)
Q Consensus 80 ~~-g~plViGTTG~~~~-~~~~l~--~~~~~~~v~s~NfSlGv~ll~~ 123 (264)
+. +.+-++..+--.+. +...+. +..+.-.+++|..-.+-.+...
T Consensus 88 ~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~ 135 (453)
T PRK09496 88 SLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARL 135 (453)
T ss_pred HhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHH
Confidence 64 66666665432221 234443 4456777899998877655443
No 194
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=46.00 E-value=1.5e+02 Score=24.55 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=39.3
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
.+.++++..+....+|.|++|...|.. -.+.++...+ ..+|+|+-|.--+.+......+ .+..-++.-.++..
T Consensus 31 ~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~-~Ga~d~l~kp~~~~ 106 (223)
T PRK10816 31 EDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLS-AGADDYVTKPFHIE 106 (223)
T ss_pred CCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHH-cCCCeeEeCCCCHH
Confidence 344445554445568988999888753 2344444433 3678888775544444332222 34333444445553
No 195
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=45.80 E-value=20 Score=32.74 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=25.9
Q ss_pred hcCCCeEEecCC----CCHHHHHHHHHccCCcEEE
Q 024671 80 KVGVPFVMGTTG----GDRVRLHETIENSNVYAVI 110 (264)
Q Consensus 80 ~~g~plViGTTG----~~~~~~~~l~~~~~~~~v~ 110 (264)
..+-.+.||++| |+++.++.+++..+.|+++
T Consensus 104 ~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 104 AAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred hhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence 357889999999 7888898888877888876
No 196
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=45.66 E-value=88 Score=28.85 Aligned_cols=85 Identities=9% Similarity=0.131 Sum_probs=38.2
Q ss_pred CchhhHHhhhhcCCCCEEEEECCCh-------HHHHHHHHH-HHhcCCCeEEecC-CCCHHHHHHHHHccC-CcEEE-cc
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVP-------AAVNGNAEL-YSKVGVPFVMGTT-GGDRVRLHETIENSN-VYAVI-SP 112 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p-------~~~~~~~~~-~~~~g~plViGTT-G~~~~~~~~l~~~~~-~~~v~-s~ 112 (264)
+.+..++......+.. |+|.++.. +.+...++. +.+..+|+++=.= |.+.+.+.+..+ .+ ..+.+ +|
T Consensus 24 e~~~avi~AAe~~~sP-vIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~-~GftSVMiD~S 101 (276)
T cd00947 24 ETLKAILEAAEETRSP-VILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIR-AGFSSVMIDGS 101 (276)
T ss_pred HHHHHHHHHHHHhCCC-EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-hCCCEEEeCCC
Confidence 3333444433333444 56666533 223333333 3334666666321 112333332222 23 44433 67
Q ss_pred chhHHHHHHHHHHHHHHHhc
Q 024671 113 QMGKQVVAFLAAMEIMAEQF 132 (264)
Q Consensus 113 NfSlGv~ll~~~~~~aa~~l 132 (264)
.+++-=|+ +..++++++.
T Consensus 102 ~l~~eeNi--~~t~~vv~~a 119 (276)
T cd00947 102 HLPFEENV--AKTKEVVELA 119 (276)
T ss_pred CCCHHHHH--HHHHHHHHHH
Confidence 77777776 4445555544
No 197
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=45.63 E-value=1e+02 Score=27.71 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=43.8
Q ss_pred EEECCChHHHHHHHHHHHhcCCCe---EEecCCCCHHHHHHHHHccCCcEEE--ccchhHHH
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPF---VMGTTGGDRVRLHETIENSNVYAVI--SPQMGKQV 118 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~pl---ViGTTG~~~~~~~~l~~~~~~~~v~--s~NfSlGv 118 (264)
.=|-....++++.+=+|..+|+++ ++-|||=-..++-.-+..+++|++. |+-.|+++
T Consensus 146 ~EDIGRHNAlDK~iG~~ll~g~~~~~~~l~~SGRis~emv~Ka~~aGIpvlvS~sapT~lav 207 (237)
T TIGR00129 146 MEDVGRHNAVDKLIGSALLNGANLRKGFILYSGRISSEMVQKAARCGVPIIASKSAPTDLAI 207 (237)
T ss_pred EeeCchHHHHHHHHHHHHHcCCCccCcEEEEeCCCcHHHHHHHHHcCCCEEEEcccchHHHH
Confidence 358899999999999999999874 7889995444443444457899987 55688887
No 198
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=45.53 E-value=57 Score=29.74 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCc-ccccc-ccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEE-ESGQK-VEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~-~~g~~-~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+++++.++..|.++++...+..+ ..-+. .+.. .-+......+..+.+........| +++|++....+.+.++..
T Consensus 164 vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvd-~v~d~~g~~~~~~~~~~l 241 (338)
T cd08295 164 VGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD-DAFNYKEEPDLDAALKRYFPNGID-IYFDNVGGKMLDAVLLNM 241 (338)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc-eeEEcCCcccHHHHHHHhCCCCcE-EEEECCCHHHHHHHHHHh
Confidence 3778888888888886654322111 00000 1110 001111111333333333223467 789988777777777777
Q ss_pred HhcCCCeEEecCC
Q 024671 79 SKVGVPFVMGTTG 91 (264)
Q Consensus 79 ~~~g~plViGTTG 91 (264)
...|.=+.+|..+
T Consensus 242 ~~~G~iv~~G~~~ 254 (338)
T cd08295 242 NLHGRIAACGMIS 254 (338)
T ss_pred ccCcEEEEecccc
Confidence 6777766677544
No 199
>PRK05865 hypothetical protein; Provisional
Probab=45.45 E-value=1.8e+02 Score=31.26 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=50.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCCh---------HHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP---------AAV 71 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p---------~~~ 71 (264)
+|+.+++.+.+.|+++++..-........ .+.-...++...++++.++ ..+| +||.+..+ ..+
T Consensus 12 IGs~La~~Ll~~G~~Vv~l~R~~~~~~~~--~v~~v~gDL~D~~~l~~al-----~~vD-~VVHlAa~~~~~~~vNv~GT 83 (854)
T PRK05865 12 LGRGLTARLLSQGHEVVGIARHRPDSWPS--SADFIAADIRDATAVESAM-----TGAD-VVAHCAWVRGRNDHINIDGT 83 (854)
T ss_pred HHHHHHHHHHHCcCEEEEEECCchhhccc--CceEEEeeCCCHHHHHHHH-----hCCC-EEEECCCcccchHHHHHHHH
Confidence 48899998888899988643221111100 0000011222222222222 2578 79998643 345
Q ss_pred HHHHHHHHhcCCC-eEEecCCCCHHHHHHHHHccCCcE
Q 024671 72 NGNAELYSKVGVP-FVMGTTGGDRVRLHETIENSNVYA 108 (264)
Q Consensus 72 ~~~~~~~~~~g~p-lViGTTG~~~~~~~~l~~~~~~~~ 108 (264)
...++.|.+.++. +|.-.|.. ....+.+....++++
T Consensus 84 ~nLLeAa~~~gvkr~V~iSS~~-K~aaE~ll~~~gl~~ 120 (854)
T PRK05865 84 ANVLKAMAETGTGRIVFTSSGH-QPRVEQMLADCGLEW 120 (854)
T ss_pred HHHHHHHHHcCCCeEEEECCcH-HHHHHHHHHHcCCCE
Confidence 6677888888875 44333332 333444544455443
No 200
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=45.26 E-value=1.1e+02 Score=26.94 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=41.9
Q ss_pred hcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC-CCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG-GDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 54 ~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG-~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
.+.....+=|.|++|.+....-+...+.+ .+.+|.=. ++.++.+...+ ++.-.++||||.-.+
T Consensus 30 ~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~-aGA~FivsP~~~~~v 93 (204)
T TIGR01182 30 IEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVD-AGAQFIVSPGLTPEL 93 (204)
T ss_pred HHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHH-cCCCEEECCCCCHHH
Confidence 34456667799999886664444444444 46666633 57777766655 577788999998754
No 201
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.24 E-value=1.7e+02 Score=23.86 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=40.4
Q ss_pred HhhhhcCCCCEEEEECCCh---HHHHHHHHHHHhc---CCCeEEecCCCC----HHHHHHHHHccCCcEEEccchhHH
Q 024671 50 LASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV---GVPFVMGTTGGD----RVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~---g~plViGTTG~~----~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
.....+..||.|.|=++.+ ..+.+.++.+.+. ++++++|=+-.. +++..+-.++.++-.+|.|+-.+-
T Consensus 47 ~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~ 124 (137)
T PRK02261 47 IDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPE 124 (137)
T ss_pred HHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHH
Confidence 3334456789667776443 4566777777776 556777654422 233222233345778999998764
No 202
>PRK08328 hypothetical protein; Provisional
Probab=45.03 E-value=44 Score=29.58 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
..| +|||-+ +++.-...-++|.++++|+|.|.+
T Consensus 118 ~~D-~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 118 GVD-VIVDCLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred cCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 467 678865 455544455677888888887554
No 203
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=44.73 E-value=2.4e+02 Score=25.43 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=35.7
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--CeEEecCCCCHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDRV 95 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--plViGTTG~~~~ 95 (264)
.|....+.++....+| +||-...+..+...++.+.+.|. +++.++.|+..+
T Consensus 183 ~d~~~~v~~l~~~~~d-~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 235 (345)
T cd06338 183 ADLSPLISKAKAAGPD-AVVVAGHFPDAVLLVRQMKELGYNPKALYMTVGPAFP 235 (345)
T ss_pred cchHHHHHHHHhcCCC-EEEECCcchhHHHHHHHHHHcCCCCCEEEEecCCCcH
Confidence 4566666777677799 56667777778888899988875 455566666433
No 204
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.66 E-value=1.3e+02 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=26.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.|+|--+.++...+.++.+.+.++|+|.=
T Consensus 50 i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 50 LENAIARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEe
Confidence 444444578865664445555677888888999999864
No 205
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=44.51 E-value=1.2e+02 Score=29.59 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=54.8
Q ss_pred ChHHHHHHHH-h--CCCeEEEEEc--------------CCCc-c-------ccccccccCceeEeecCCchhhHHhhhhc
Q 024671 1 MGKAVIKAAD-A--AGLELVPVSF--------------GTEE-E-------SGQKVEVCGKEIQVHGLSDRESVLASVFD 55 (264)
Q Consensus 1 MG~~i~~~~~-~--~~~eLv~~~~--------------~~~~-~-------~g~~~~~~~~~i~i~~~~dl~~~l~~~~~ 55 (264)
.||.+.+.+. . +.++|+++=+ +..+ . .|+.+.+.+..|.+....|+++. .+.+
T Consensus 71 IGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~--~w~~ 148 (395)
T PLN03096 71 IGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNL--PWGE 148 (395)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccc--cccc
Confidence 3899999876 3 4688885422 1100 0 12223344556777764454432 1222
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
...| +||+-|-.....+.....++.|...|+=|.
T Consensus 149 ~gvD-iVie~TG~f~s~~~a~~hl~aGAkkV~iSa 182 (395)
T PLN03096 149 LGID-LVIEGTGVFVDREGAGKHIQAGAKKVLITA 182 (395)
T ss_pred cCCC-EEEECcchhhhHHHHHHHHHCCCEEEEeCC
Confidence 4678 899999988888888888888977776553
No 206
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=44.51 E-value=1e+02 Score=26.64 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=56.7
Q ss_pred CchhhHHhhhhc-CCCCEEEEECCCh----HHHHHHHHHHHhc--CCCeEEecCCCCHH-HHHHHHHccCCcEEEccch-
Q 024671 44 SDRESVLASVFD-KYPNMIVVDYTVP----AAVNGNAELYSKV--GVPFVMGTTGGDRV-RLHETIENSNVYAVISPQM- 114 (264)
Q Consensus 44 ~dl~~~l~~~~~-~~~d~VvIDFS~p----~~~~~~~~~~~~~--g~plViGTTG~~~~-~~~~l~~~~~~~~v~s~Nf- 114 (264)
.++...++.+.. .....|++++.+| ....+..+...+. ++|+|.-..|+... .. .++-++. -++.+||-
T Consensus 16 ~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~-~la~aaD-~i~a~p~a~ 93 (207)
T TIGR00706 16 EDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGY-YIAMAAD-EIVANPGTI 93 (207)
T ss_pred HHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHH-HHHhcCC-EEEECCCCe
Confidence 344555555442 2344678888766 3334444443344 59999988887542 22 2333333 35667774
Q ss_pred --hHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeecCCCCCCC
Q 024671 115 --GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT 154 (264)
Q Consensus 115 --SlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~HH~~K~Da 154 (264)
|+|+.......+.+.+ .+.|++.-.|....|++
T Consensus 94 vg~iGv~~~~~~~~~~l~-------k~Gv~~~~~~~g~~K~~ 128 (207)
T TIGR00706 94 TGSIGVILQGANVEKLYE-------KLGIEFEVIKSGEYKDI 128 (207)
T ss_pred EEeeeEEEecCCHHHHHH-------hCCceEEEEEcCCCcCC
Confidence 5666544333333333 34677777777777765
No 207
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=44.48 E-value=59 Score=34.54 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCH------HHHHHHHHccCCcEEEccchhHHHHHHHHH
Q 024671 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR------VRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (264)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~------~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~ 124 (264)
.+ |+||.|.-+....+...++++|+++|..--+.-. .++.+++++.+..+.|.++..=|.-++.-+
T Consensus 548 ~~-vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l 619 (819)
T PRK09436 548 NP-VIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETL 619 (819)
T ss_pred CC-EEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHH
Confidence 46 8999998777788888999999999998766422 356666677778889999888887665544
No 208
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=44.41 E-value=66 Score=30.02 Aligned_cols=61 Identities=10% Similarity=0.173 Sum_probs=41.6
Q ss_pred hHHhhhhcCCCCEEEEECCCh--HHHHHHHHHHHhcCCCeEEecCC----------CCHHHHHHHHHccC-CcEEEccch
Q 024671 48 SVLASVFDKYPNMIVVDYTVP--AAVNGNAELYSKVGVPFVMGTTG----------GDRVRLHETIENSN-VYAVISPQM 114 (264)
Q Consensus 48 ~~l~~~~~~~~d~VvIDFS~p--~~~~~~~~~~~~~g~plViGTTG----------~~~~~~~~l~~~~~-~~~v~s~Nf 114 (264)
+++.++.. -. ++||-||- +.+.+.++.+ ..|+|.-=|+ +++++++.+++..+ +.+.+.|.|
T Consensus 158 ~vv~~mn~--lG-miiDvSH~s~~~~~dv~~~s---~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~~f 231 (309)
T cd01301 158 ELVREMNR--LG-IIIDLSHLSERTFWDVLDIS---NAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAF 231 (309)
T ss_pred HHHHHHHH--cC-CEEEcCCCCHHHHHHHHHhc---CCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeHHH
Confidence 34454433 34 79999964 6667766665 7898877666 46789999998877 556555444
No 209
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=44.30 E-value=71 Score=30.45 Aligned_cols=82 Identities=20% Similarity=0.372 Sum_probs=50.2
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccc--cccccccCceeEeecC-CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEES--GQKVEVCGKEIQVHGL-SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~--g~~~~~~~~~i~i~~~-~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
+|.+.++.+..-+.++++. +.+++.. .+.++. ..-+... +|.-+.+. . .+| ++||+..+..+...++.
T Consensus 178 lGh~avQ~Aka~ga~Via~-~~~~~K~e~a~~lGA---d~~i~~~~~~~~~~~~---~-~~d-~ii~tv~~~~~~~~l~~ 248 (339)
T COG1064 178 LGHMAVQYAKAMGAEVIAI-TRSEEKLELAKKLGA---DHVINSSDSDALEAVK---E-IAD-AIIDTVGPATLEPSLKA 248 (339)
T ss_pred HHHHHHHHHHHcCCeEEEE-eCChHHHHHHHHhCC---cEEEEcCCchhhHHhH---h-hCc-EEEECCChhhHHHHHHH
Confidence 3788888888888998864 4332211 111111 0112211 12111222 1 278 79999998888999998
Q ss_pred HHhcCCCeEEecCC
Q 024671 78 YSKVGVPFVMGTTG 91 (264)
Q Consensus 78 ~~~~g~plViGTTG 91 (264)
+...|.=+++|-.+
T Consensus 249 l~~~G~~v~vG~~~ 262 (339)
T COG1064 249 LRRGGTLVLVGLPG 262 (339)
T ss_pred HhcCCEEEEECCCC
Confidence 88889888888876
No 210
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=44.19 E-value=71 Score=28.65 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=36.3
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--C-eEEecCCCCHH
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--P-FVMGTTGGDRV 95 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--p-lViGTTG~~~~ 95 (264)
..|....+..+.+..|| +|+=+..+......++.+.+.|. . .++|+.++...
T Consensus 175 ~~d~~~~v~~~~~~~pd-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 229 (336)
T cd06360 175 TSDFASYLAQIPDDVPD-AVFVFFAGGDAIKFVKQYDAAGLKAKIPLIGSGFLTDG 229 (336)
T ss_pred CcchHHHHHHHHhcCCC-EEEEecccccHHHHHHHHHHcCCccCCeEEecccccCH
Confidence 45666667777778899 45545556667788999999887 3 56777665443
No 211
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=44.17 E-value=53 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=11.9
Q ss_pred hHHHHHHHHhCCCeEEEEEc
Q 024671 2 GKAVIKAADAAGLELVPVSF 21 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~ 21 (264)
|..+++.+...|+.-...+|
T Consensus 33 Gs~va~~La~~Gvg~i~lvD 52 (228)
T cd00757 33 GSPAAEYLAAAGVGKLGLVD 52 (228)
T ss_pred HHHHHHHHHHcCCCEEEEEc
Confidence 67777777666654333444
No 212
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=44.13 E-value=1e+02 Score=27.84 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=37.8
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCH-HHHHHHHHccCCcEEEccc
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~-~~~~~l~~~~~~~~v~s~N 113 (264)
.+-||-++|+++...++ .|.++|=-.+|+.. +++-.++...+.++|..++
T Consensus 78 plSIDT~~~~v~e~al~----~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 78 LISVDTFRAEVARAALE----AGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred cEEEeCCCHHHHHHHHH----hCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECC
Confidence 47999999997766555 58999999999964 5566666667788776544
No 213
>PRK07680 late competence protein ComER; Validated
Probab=44.04 E-value=2.4e+02 Score=25.24 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=48.9
Q ss_pred ChHHHHHHHHhCCC---eEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGL---ELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~---eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
||+.+++.+.+.+. +-+.++++..... +.+.-...++.+. .+.++++. .+| +||=-..|..+.+.++.
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~-~~~~~~~~g~~~~--~~~~~~~~-----~aD-iVilav~p~~~~~vl~~ 81 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKA-YHIKERYPGIHVA--KTIEEVIS-----QSD-LIFICVKPLDIYPLLQK 81 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHH-HHHHHHcCCeEEE--CCHHHHHH-----hCC-EEEEecCHHHHHHHHHH
Confidence 79999988876553 2233444432111 0010000133332 24333332 578 56666678888887776
Q ss_pred HHh---cCCCeEEecCCCCHHHHHHHH
Q 024671 78 YSK---VGVPFVMGTTGGDRVRLHETI 101 (264)
Q Consensus 78 ~~~---~g~plViGTTG~~~~~~~~l~ 101 (264)
... .+..+|.-+.|.+.++++...
T Consensus 82 l~~~l~~~~~iis~~ag~~~~~L~~~~ 108 (273)
T PRK07680 82 LAPHLTDEHCLVSITSPISVEQLETLV 108 (273)
T ss_pred HHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 543 344455666667766666543
No 214
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=43.94 E-value=2.7e+02 Score=25.95 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=56.7
Q ss_pred hHHHHHHHHhC---CCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 2 GKAVIKAADAA---GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 2 G~~i~~~~~~~---~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
|+++++.+.++ .++|++.... ...|+.+...+..+.+.. ++. ..+ ...| +||..+-.....+.+...
T Consensus 14 G~~l~~lL~~~~hp~~~l~~l~s~--~~~g~~l~~~g~~i~v~d---~~~--~~~--~~vD-vVf~A~g~g~s~~~~~~~ 83 (334)
T PRK14874 14 GREMLNILEERNFPVDKLRLLASA--RSAGKELSFKGKELKVED---LTT--FDF--SGVD-IALFSAGGSVSKKYAPKA 83 (334)
T ss_pred HHHHHHHHHhCCCCcceEEEEEcc--ccCCCeeeeCCceeEEee---CCH--HHH--cCCC-EEEECCChHHHHHHHHHH
Confidence 88999988764 4566764332 233444433333344432 111 111 2578 788776666788888888
Q ss_pred HhcCCCeE-------------EecCCCCHHHHHHHHHccCCcEEEccchhH
Q 024671 79 SKVGVPFV-------------MGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 79 ~~~g~plV-------------iGTTG~~~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
.+.|..+| .|-.+++.++++. ..+..++-.||=.-
T Consensus 84 ~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~---~~~~~iVanp~C~~ 131 (334)
T PRK14874 84 AAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAE---HRKKGIIANPNCST 131 (334)
T ss_pred HhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhh---hhcCCeEECccHHH
Confidence 88888555 2444445554432 10124777777433
No 215
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.82 E-value=81 Score=27.10 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=45.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc--CCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...++|.+++.. ++.... .+++....+.. .+...+-.|++.++.+...++.+
T Consensus 14 iG~~la~~L~~~g~~vi~~-~r~~~~------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 14 IGLGIARALAAAGFDLAIN-DRPDDE------------------ELAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred HHHHHHHHHHHCCCEEEEE-ecCchh------------------HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4888998888888888753 322110 01111111111 12334568999999999999888
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..|+-..|.
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 75 QAAWGRIDCLVNNAGV 90 (256)
T ss_pred HHhcCCCCEEEECCcc
Confidence 764 57888888886
No 216
>PRK12939 short chain dehydrogenase; Provisional
Probab=43.82 E-value=1.4e+02 Score=25.30 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=45.2
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc--CCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...+.|++++.. ++... .++...+.+.. ...+.+..|++.++.+...++.+
T Consensus 19 iG~~la~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFN-DGLAA-------------------EARELAAALEAAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred HHHHHHHHHHHcCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4788888888888887753 32211 11111111111 12334567999999999888877
Q ss_pred Hhc--CCCeEEecCCCC
Q 024671 79 SKV--GVPFVMGTTGGD 93 (264)
Q Consensus 79 ~~~--g~plViGTTG~~ 93 (264)
.+. ++..|+-..|..
T Consensus 79 ~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 79 AAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 663 678888888863
No 217
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=43.66 E-value=80 Score=30.01 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=56.1
Q ss_pred ChHHHHHHHH-hCCCeEEEEEcCC-C-cc----------ccc---c-------ccccCceeEeecCCchhhHHhhhhcCC
Q 024671 1 MGKAVIKAAD-AAGLELVPVSFGT-E-EE----------SGQ---K-------VEVCGKEIQVHGLSDRESVLASVFDKY 57 (264)
Q Consensus 1 MG~~i~~~~~-~~~~eLv~~~~~~-~-~~----------~g~---~-------~~~~~~~i~i~~~~dl~~~l~~~~~~~ 57 (264)
+||.+.+++. ++++++|+.-+.. + +. -|+ . +-+.+..|.+....|+++. . ..+..
T Consensus 13 IGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~~l-p-W~~~g 90 (337)
T PTZ00023 13 IGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPAAI-P-WGKNG 90 (337)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChhhC-C-ccccC
Confidence 4899999887 5789999764411 0 00 010 1 1123445677666665542 1 23346
Q ss_pred CCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.| ++++-|-.....+.....++.|...|+=+.
T Consensus 91 vD-iVle~tG~~~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 91 VD-VVCESTGVFLTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred CC-EEEEecchhcCHHHHHHHhhCCCEEEEeCC
Confidence 78 799989888888888888888987777664
No 218
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.54 E-value=1.4e+02 Score=26.83 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccch
Q 024671 68 PAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQM 114 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~Nf 114 (264)
|..+.+.++.+.+.+++.|+.-+.++....+.+++..+++++.-.++
T Consensus 203 ~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 203 PADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 44555555555556666666665555555555555555555443333
No 219
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=43.48 E-value=1.6e+02 Score=26.53 Aligned_cols=22 Identities=36% Similarity=0.295 Sum_probs=16.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~ 23 (264)
||+.+++.+.+.|+++.+ .++.
T Consensus 13 mG~~~a~~l~~~g~~v~~-~d~~ 34 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVV-YDRN 34 (296)
T ss_pred HHHHHHHHHHHCCCeEEE-EcCC
Confidence 789999888888998874 4543
No 220
>COG2229 Predicted GTPase [General function prediction only]
Probab=43.25 E-value=81 Score=27.58 Aligned_cols=49 Identities=14% Similarity=0.309 Sum_probs=36.6
Q ss_pred EEEEECCChHHH--HHHHHHHHhcC-CCeEEecCCC------CHHHHHHHHHcc--CCcE
Q 024671 60 MIVVDYTVPAAV--NGNAELYSKVG-VPFVMGTTGG------DRVRLHETIENS--NVYA 108 (264)
Q Consensus 60 ~VvIDFS~p~~~--~~~~~~~~~~g-~plViGTTG~------~~~~~~~l~~~~--~~~~ 108 (264)
+++||-|.|... .+.+++..... +|+||+.+-. ++++++++-+.. .+|+
T Consensus 96 ivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~v 155 (187)
T COG2229 96 IVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPV 155 (187)
T ss_pred EEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCce
Confidence 689999999875 77788877777 9999999875 456666655544 4565
No 221
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=42.98 E-value=1.6e+02 Score=23.06 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=42.7
Q ss_pred HhhhhcCCCCEEEEECCCh---HHHHHHHHHHHhc---CCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 50 LASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV---GVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~---g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
.....+..||.|+|=++.+ +.+.+.++.+.+. ++++++|=++. +++.+++.+ +++--++-++.+.--
T Consensus 43 ~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~-~~~~~~~~~-~G~d~~~~~~~~~~~ 115 (122)
T cd02071 43 VEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP-PEDYELLKE-MGVAEIFGPGTSIEE 115 (122)
T ss_pred HHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC-HHHHHHHHH-CCCCEEECCCCCHHH
Confidence 3444456899778877654 4456666666666 55677775554 334555554 457778888888754
No 222
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=42.79 E-value=1.4e+02 Score=24.51 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=26.4
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
+..+....+| .+|=+..........+.+.+.++|+|.-.+.
T Consensus 51 ~~~~~~~~~d-~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~ 91 (269)
T cd01391 51 LRDLIQQGVD-GIIGPPSSSSALAVVELAAAAGIPVVSLDAT 91 (269)
T ss_pred HHHHHHcCCC-EEEecCCCHHHHHHHHHHHHcCCcEEEecCC
Confidence 3444445688 4555555444444778888999999886654
No 223
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.72 E-value=1.2e+02 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=40.6
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--CeEEecCCCCHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDRVRLHET 100 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--plViGTTG~~~~~~~~l 100 (264)
.|....+.++....|| +|+=.+.+......++.+.+.|+ |.+++.++++.+-++..
T Consensus 175 ~d~~~~~~~i~~~~pd-aV~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 232 (341)
T cd06341 175 PDPTPQAQQAAAAGAD-AIITVLDAAVCASVLKAVRAAGLTPKVVLSGTCYDPALLAAP 232 (341)
T ss_pred CCHHHHHHHHHhcCCC-EEEEecChHHHHHHHHHHHHcCCCCCEEEecCCCCHHHHHhc
Confidence 4565667777667899 56766677688999999999876 56777778876644444
No 224
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.69 E-value=47 Score=29.67 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcE-EEccchhHHHHHHHH
Q 024671 67 VPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYA-VISPQMGKQVVAFLA 123 (264)
Q Consensus 67 ~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~-v~s~NfSlGv~ll~~ 123 (264)
+|....+.+++|.++++|++-|. +|+.|+....+..--.+ ++-.+ ++|...+..
T Consensus 97 sP~~~~~v~~~~~~~~i~~iPG~--~TpsEi~~A~~~Ga~~vKlFPA~-~~G~~~ika 151 (222)
T PRK07114 97 TPLFNPDIAKVCNRRKVPYSPGC--GSLSEIGYAEELGCEIVKLFPGS-VYGPGFVKA 151 (222)
T ss_pred CCCCCHHHHHHHHHcCCCEeCCC--CCHHHHHHHHHCCCCEEEECccc-ccCHHHHHH
Confidence 68888899999999999999998 78887766555432333 66666 778654443
No 225
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=42.66 E-value=97 Score=28.13 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=7.5
Q ss_pred CCCeEEecCCCCHH
Q 024671 82 GVPFVMGTTGGDRV 95 (264)
Q Consensus 82 g~plViGTTG~~~~ 95 (264)
++|++.|++..+.+
T Consensus 67 ~~~vi~gv~~~s~~ 80 (285)
T TIGR00674 67 RVPVIAGTGSNATE 80 (285)
T ss_pred CCeEEEeCCCccHH
Confidence 45666665555443
No 226
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=42.62 E-value=98 Score=27.90 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcCCC--eEEecCC
Q 024671 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~p--lViGTTG 91 (264)
+++..+++++.+.|+. +|.||||
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~GstG 45 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTG 45 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc
Confidence 4555555555555554 2345555
No 227
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=42.50 E-value=2.1e+02 Score=24.14 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=25.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
+..+....+|.|++-.+.++...+.++.+.+.++|+|.-.+
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~ 88 (267)
T cd01536 48 IEDLIAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDS 88 (267)
T ss_pred HHHHHHcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecC
Confidence 34444446885445444444445577888889999988543
No 228
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=42.41 E-value=1.1e+02 Score=26.02 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=32.8
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC---CeEEecCCCCH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV---PFVMGTTGGDR 94 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~---plViGTTG~~~ 94 (264)
+....+.++....+| +|+.++.+..+...++.+.+.|+ ..++|+..+..
T Consensus 179 ~~~~~~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~ 230 (299)
T cd04509 179 DFTSLLQKLKAAKPD-VIVLCGSGEDAATILKQAAEAGLTGGYPILGITLGLS 230 (299)
T ss_pred cHHHHHHHHHhcCCC-EEEEcccchHHHHHHHHHHHcCCCCCCcEEecccccC
Confidence 444555555555578 67778887778888888888875 45666655543
No 229
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=42.30 E-value=94 Score=28.13 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=36.2
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEcc
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISP 112 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~ 112 (264)
.+-||-++|+++...++ .|.++|==.||+..+++-.++...+.++|+-+
T Consensus 77 plsiDT~~~~vi~~al~----~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 77 PISVDTYRAEVARAALE----AGADIINDVSGGQDPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred eEEEeCCCHHHHHHHHH----cCCCEEEECCCCCCchhHHHHHHcCCcEEEEe
Confidence 47999999997766554 59999999999854455556666677776543
No 230
>PRK09701 D-allose transporter subunit; Provisional
Probab=42.28 E-value=2.4e+02 Score=25.38 Aligned_cols=42 Identities=12% Similarity=-0.040 Sum_probs=27.1
Q ss_pred HHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 49 VLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.++.+....+|.++|.=..+......+..+.+.|+|+|+-.+
T Consensus 74 ~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~ 115 (311)
T PRK09701 74 LFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDE 115 (311)
T ss_pred HHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEeCC
Confidence 345555557896666544555554556777889999876543
No 231
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=42.18 E-value=69 Score=27.27 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=31.7
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCC-CeEEecCCCCHHHHHHHHHc
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGV-PFVMGTTGGDRVRLHETIEN 103 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~-plViGTTG~~~~~~~~l~~~ 103 (264)
..+|.|.+|=.+|+.+.+.++...+.+. ..+..+-|++.+.+.++++.
T Consensus 99 ~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 99 AGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp TT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred hCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 4678778888888888888887765444 44445555777777777654
No 232
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=42.16 E-value=85 Score=28.45 Aligned_cols=87 Identities=8% Similarity=-0.006 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCCC-eEEEEEcCCCc--cccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGL-ELVPVSFGTEE--ESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~-eLv~~~~~~~~--~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
+|+++++.+...|. ++++...+..+ .+-+..+. ..+-.+...++.+.+.++.....| +++|++....+...++.
T Consensus 167 vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--~~vi~~~~~~~~~~i~~~~~~gvd-~vid~~g~~~~~~~~~~ 243 (345)
T cd08293 167 CGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--DAAINYKTDNVAERLRELCPEGVD-VYFDNVGGEISDTVISQ 243 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--cEEEECCCCCHHHHHHHHCCCCce-EEEECCCcHHHHHHHHH
Confidence 36777777777777 56643221110 00000111 011111112333333333333466 68887766666666666
Q ss_pred HHhcCCCeEEecC
Q 024671 78 YSKVGVPFVMGTT 90 (264)
Q Consensus 78 ~~~~g~plViGTT 90 (264)
+...|.=+.+|.+
T Consensus 244 l~~~G~iv~~G~~ 256 (345)
T cd08293 244 MNENSHIILCGQI 256 (345)
T ss_pred hccCCEEEEEeee
Confidence 6566665556643
No 233
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=42.13 E-value=97 Score=28.07 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=45.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcccc---c---cc-cccC----ceeEeecCCchhhHHhhhhcCCCCEEEEECCChH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESG---Q---KV-EVCG----KEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA 69 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g---~---~~-~~~~----~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~ 69 (264)
||..++..+.+.|+++. .+++.+.... . .. ...+ .++.. ..++++++. .+| ++|=...+.
T Consensus 12 mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~D-~vi~~v~~~ 82 (325)
T PRK00094 12 WGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRA--TTDLAEALA-----DAD-LILVAVPSQ 82 (325)
T ss_pred HHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEE--eCCHHHHHh-----CCC-EEEEeCCHH
Confidence 79999988888888865 3443321110 0 00 0000 01222 234443332 578 677777777
Q ss_pred HHHHHHHHHHh---cCCCeEEecCCCCH
Q 024671 70 AVNGNAELYSK---VGVPFVMGTTGGDR 94 (264)
Q Consensus 70 ~~~~~~~~~~~---~g~plViGTTG~~~ 94 (264)
.+.+.++.... .+..+|.-+.|++.
T Consensus 83 ~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 83 ALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 77776665554 34445555558765
No 234
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=42.09 E-value=2e+02 Score=24.24 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=37.2
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHHH-HHHHHHHH-hcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAAV-NGNAELYS-KVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~~-~~~~~~~~-~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
+.++++..+....+|.|++|...|... .+.++... ....|+|+.|+.-+.+...... ..+..-++...++.
T Consensus 33 ~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~~~~~~~~~~~~~-~~Ga~d~l~kP~~~ 105 (240)
T PRK10701 33 RGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLTSLDSDMNHILAL-EMGACDYILKTTPP 105 (240)
T ss_pred CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCCHHHHHHHH-HcCCCEEEECCCCH
Confidence 334445544455789889998877531 23332222 3467888887655544332222 33433344444444
No 235
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.09 E-value=1.1e+02 Score=28.40 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=18.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEE-EeecCC
Q 024671 111 SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQV-LESHQA 149 (264)
Q Consensus 111 s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI-~E~HH~ 149 (264)
.|++++-=|+ +..+++.++.. .|++.+ .|.-|-
T Consensus 105 gS~l~~eeNi--~~T~~vve~Ah----~~gv~VEaElG~v 138 (283)
T PRK07998 105 GAALPFEENI--AFTKEAVDFAK----SYGVPVEAELGAI 138 (283)
T ss_pred CCCCCHHHHH--HHHHHHHHHHH----HcCCEEEEEeccC
Confidence 5666775454 33444554442 356666 577666
No 236
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=41.99 E-value=1.5e+02 Score=27.39 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=35.4
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC----CeEEecCCCC
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV----PFVMGTTGGD 93 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~----plViGTTG~~ 93 (264)
.|....+.++.... | |+|-+..++.+...++.+.+.|. .+++++.++.
T Consensus 182 ~d~~~~l~~i~~~~-~-vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~~~~~ 233 (389)
T cd06352 182 EDLLEILQDIKRRS-R-IIIMCGSSEDVRELLLAAHDLGLTSGDYVFILIDLFN 233 (389)
T ss_pred hhHHHHHHHhhhcc-e-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEEehhc
Confidence 45555666665544 6 78889888989999999999887 4677765554
No 237
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=41.97 E-value=31 Score=29.86 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=47.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc-CCCCEEEEECCChHHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
+|+.|++...+.|..++.. +.... +++..++++.+ ...+++..|++.++.+...++.+.
T Consensus 8 iG~aia~~l~~~Ga~V~~~-~~~~~-------------------~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILT-DRNEE-------------------KLADALEELAKEYGAEVIQCDLSDEESVEALFDEAV 67 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEE-ESSHH-------------------HHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEE-eCChH-------------------HHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHH
Confidence 5899999999999988753 32211 11111222222 123367899999999999999988
Q ss_pred hc---CCCeEEecCCCC
Q 024671 80 KV---GVPFVMGTTGGD 93 (264)
Q Consensus 80 ~~---g~plViGTTG~~ 93 (264)
+. ++.++|-..|+.
T Consensus 68 ~~~~g~iD~lV~~a~~~ 84 (241)
T PF13561_consen 68 ERFGGRIDILVNNAGIS 84 (241)
T ss_dssp HHHCSSESEEEEEEESC
T ss_pred hhcCCCeEEEEeccccc
Confidence 86 366666555543
No 238
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=41.87 E-value=58 Score=24.83 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=39.6
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHH-HHHHHHHccCCcEEEccchhHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRV-RLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~-~~~~l~~~~~~~~v~s~NfSlG 117 (264)
.+++..++.+.+ -+.||+-..++ +.+..|...+++.+|=|-|..++ ++.++++..++|++.+|.=+.-
T Consensus 29 ~~~~~~~~~~~~--~~lvIt~gdR~----di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~dtf~ 97 (105)
T PF07085_consen 29 MSLSDFLEYLKP--GDLVITPGDRE----DIQLAAIEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYDTFE 97 (105)
T ss_dssp S-HHHHHHCHHT--TEEEEEETT-H----HHHHHHCCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-HHH
T ss_pred CCHHHHHhhcCC--CeEEEEeCCcH----HHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 344555554322 23344447775 46667888899999999888754 5777777778999888865443
No 239
>PRK07877 hypothetical protein; Provisional
Probab=41.87 E-value=41 Score=35.30 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=26.5
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+ +.++=+-.-++|.++|+|+|.|+.
T Consensus 196 ~~D-lVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 196 GLD-VVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 578 899988 455555666889999999999994
No 240
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=41.85 E-value=4.7 Score=27.97 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=16.2
Q ss_pred eEEecCCCCHHHHHHHHHcc-CCcEEEccchhH
Q 024671 85 FVMGTTGGDRVRLHETIENS-NVYAVISPQMGK 116 (264)
Q Consensus 85 lViGTTG~~~~~~~~l~~~~-~~~~v~s~NfSl 116 (264)
+|+.+||+++.+.+.+.+.. ..+.-+++||+-
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~ 33 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTK 33 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSST
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccC
Confidence 57889999765433333322 255556666543
No 241
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=41.62 E-value=1.8e+02 Score=23.76 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=28.0
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh--cCCCeEEecCCCC
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGD 93 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~plViGTTG~~ 93 (264)
+.++++..+....+|.|++|...|.. -.+.++...+ ...|+|+-| +..
T Consensus 32 ~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls-~~~ 82 (222)
T PRK10643 32 TAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILT-ARD 82 (222)
T ss_pred CHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEE-CCC
Confidence 34444444444568988999888753 2344444443 357777765 444
No 242
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=41.40 E-value=1.3e+02 Score=30.04 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~ 23 (264)
||+.+++.+.+.|++|+. .+++
T Consensus 17 MG~~mA~nL~~~G~~V~V-~NRt 38 (493)
T PLN02350 17 MGQNLALNIAEKGFPISV-YNRT 38 (493)
T ss_pred HHHHHHHHHHhCCCeEEE-ECCC
Confidence 999999999999999873 4543
No 243
>PRK12743 oxidoreductase; Provisional
Probab=41.32 E-value=1.6e+02 Score=25.41 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcC--CCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...+.|+.++....+... .++...+++... ....+-.|++.++.+...++.+
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWHSDEE-------------------GAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChH-------------------HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4888888888888888643222110 111111221111 2233458999999999888876
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..|+-..|+
T Consensus 75 ~~~~~~id~li~~ag~ 90 (256)
T PRK12743 75 IQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 653 46788888886
No 244
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=41.20 E-value=1.3e+02 Score=27.92 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=14.1
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+++.+.+.+...++.|.+.+.|+++.++
T Consensus 22 AfNv~n~e~~~avi~AAee~~sPvIlq~~ 50 (284)
T PRK12857 22 AFNCNNMEIVQAIVAAAEAEKSPVIIQAS 50 (284)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 44444445455555555555555554443
No 245
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=41.17 E-value=1.9e+02 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=25.4
Q ss_pred EEEECCChHHHHHHHHHHHhc--CCCeEEecCCCC
Q 024671 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGGD 93 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~plViGTTG~~ 93 (264)
+-.|++.++.+.+.++.+.+. ++..|+-+.|..
T Consensus 60 ~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (248)
T PRK05557 60 VQGDVSDAESVERAVDEAKAEFGGVDILVNNAGIT 94 (248)
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 345999999998888877653 677888888863
No 246
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=41.12 E-value=69 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHc
Q 024671 70 AVNGNAELYSKVGVPFVMGTTGGDRVRLHETIEN 103 (264)
Q Consensus 70 ~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~ 103 (264)
.+.+.++.+.++|+++|+. ||=+..++..+.+.
T Consensus 19 ~~~~ai~~l~~~G~~~vi~-TgR~~~~~~~~~~~ 51 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFV-SSKTRAEQEYYREE 51 (225)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHH
Confidence 4788899999999999998 57776666555443
No 247
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.97 E-value=1.5e+02 Score=25.46 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=26.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.++|--+.+....+.++.+.+.|+|+|.-
T Consensus 48 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 48 VEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred HHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE
Confidence 444444578966664445566677788888899998764
No 248
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=40.92 E-value=1.2e+02 Score=28.00 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=12.6
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+++.+.+.+...++.|.+.+.|+++.+
T Consensus 20 AfN~~n~e~~~avi~AAee~~sPvIlq~ 47 (282)
T TIGR01858 20 AFNIHNLETIQAVVETAAEMRSPVILAG 47 (282)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3444444444444444444444444443
No 249
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=40.90 E-value=73 Score=31.03 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHhcCCCeEEe-cCC--C-CHHHHHHHHHccCCcEEEc
Q 024671 66 TVPAAVNGNAELYSKVGVPFVMG-TTG--G-DRVRLHETIENSNVYAVIS 111 (264)
Q Consensus 66 S~p~~~~~~~~~~~~~g~plViG-TTG--~-~~~~~~~l~~~~~~~~v~s 111 (264)
+.++.+.+.++.+.+.+++..++ |+| + +++.++++.+..=-++.+|
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iS 135 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFT 135 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEe
Confidence 34478899999999999999998 985 4 5667777766522344443
No 250
>PRK05867 short chain dehydrogenase; Provisional
Probab=40.77 E-value=1.4e+02 Score=25.84 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=44.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCC--CCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|.+++.. ++.. +.+++..+.+.... ...+..|++.++.+.+.++.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~-~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIA-ARHL-------------------DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred HHHHHHHHHHHCCCEEEEE-cCCH-------------------HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 4888888888888887643 2221 11111112111111 223568999999999988877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..++-..|.
T Consensus 81 ~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 81 TAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHhCCCCEEEECCCC
Confidence 654 67788877775
No 251
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=40.65 E-value=1.6e+02 Score=23.70 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=35.9
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
++.++++..+....||.|++|...|.. ..+.++.. ....|+|+-|.--+.+......+ .+.--++...++..
T Consensus 34 ~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l-~~~~~vi~~s~~~~~~~~~~~~~-~ga~~~i~kp~~~~ 106 (196)
T PRK10360 34 GSGREALAGLPGRGVQVCICDISMPDISGLELLSQL-PKGMATIMLSVHDSPALVEQALN-AGARGFLSKRCSPD 106 (196)
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH-ccCCCEEEEECCCCHHHHHHHHH-cCCcEEEECCCCHH
Confidence 344555555555568988999876642 22333332 34567666554333333333333 34333444445543
No 252
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=40.60 E-value=1.4e+02 Score=25.54 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.++|.+++....+.+ ..+++..+.+.....+ .+-.|++.++.+.+.++.+
T Consensus 18 iG~~la~~l~~~g~~v~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (247)
T PRK12935 18 IGKAITVALAQEGAKVVINYNSSK-------------------EAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEA 78 (247)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCcH-------------------HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 478888888877888764322111 0111111222111122 3467999999999888877
Q ss_pred Hhc--CCCeEEecCCCC
Q 024671 79 SKV--GVPFVMGTTGGD 93 (264)
Q Consensus 79 ~~~--g~plViGTTG~~ 93 (264)
.+. .+..|+-.+|+.
T Consensus 79 ~~~~~~id~vi~~ag~~ 95 (247)
T PRK12935 79 VNHFGKVDILVNNAGIT 95 (247)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 663 467888888873
No 253
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=40.51 E-value=56 Score=26.85 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=54.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccc------ccc-ccccCc--eeEeecCCchhhHHhhhhcCCCCEEEEECCCh-HH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEES------GQK-VEVCGK--EIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AA 70 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~------g~~-~~~~~~--~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p-~~ 70 (264)
||.+++..+...++++.- ..+..... +.. ....+. .-.+..++|++++++ .+| ++| ++.| .+
T Consensus 10 ~G~AlA~~la~~g~~V~l-~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~-----~ad-~Ii-iavPs~~ 81 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTL-WGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE-----DAD-III-IAVPSQA 81 (157)
T ss_dssp HHHHHHHHHHHCTEEEEE-ETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT-----T-S-EEE-E-S-GGG
T ss_pred HHHHHHHHHHHcCCEEEE-EeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC-----ccc-EEE-ecccHHH
Confidence 588888888788887763 22221110 000 001111 112333568887774 578 566 4555 44
Q ss_pred HHHHHHHHH---hcCCCeEEecCCCCH-------HHHHHHHHccCCcEEEccchhHHH
Q 024671 71 VNGNAELYS---KVGVPFVMGTTGGDR-------VRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 71 ~~~~~~~~~---~~g~plViGTTG~~~-------~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
..+.++... +.+.++|+.|-|+.. +-+++......+.++--|||.--+
T Consensus 82 ~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei 139 (157)
T PF01210_consen 82 HREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI 139 (157)
T ss_dssp HHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred HHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence 444544443 478899998889832 223333332335567789987643
No 254
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=40.45 E-value=1.5e+02 Score=28.11 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=58.3
Q ss_pred hHHHHHHHHh---CCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 2 GKAVIKAADA---AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 2 G~~i~~~~~~---~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
|+++++.+.+ +..+|...... ...|+.+...+..+.+.. ++ .......| +++=..-.+...+.++.+
T Consensus 17 G~ellrlL~~~~hP~~~l~~laS~--~saG~~~~~~~~~~~v~~---~~----~~~~~~~D-vvf~a~p~~~s~~~~~~~ 86 (336)
T PRK08040 17 GEALLELLAERQFPVGELYALASE--ESAGETLRFGGKSVTVQD---AA----EFDWSQAQ-LAFFVAGREASAAYAEEA 86 (336)
T ss_pred HHHHHHHHhcCCCCceEEEEEEcc--CcCCceEEECCcceEEEe---Cc----hhhccCCC-EEEECCCHHHHHHHHHHH
Confidence 8899998875 67787755322 345666644443455532 11 11112467 444444445666888888
Q ss_pred HhcCCCeEEec-------------CCCCHHHHHHHHHccCCcEEEccchhH
Q 024671 79 SKVGVPFVMGT-------------TGGDRVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 79 ~~~g~plViGT-------------TG~~~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
.+.|+.+|--+ ..++.+.++.+. +..++-.||=+-
T Consensus 87 ~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~---~~~iIAnPgC~~ 134 (336)
T PRK08040 87 TNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR---NRNIIAVADSLT 134 (336)
T ss_pred HHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc---cCCEEECCCHHH
Confidence 88888766544 333444444442 245788888443
No 255
>PRK07062 short chain dehydrogenase; Provisional
Probab=40.37 E-value=1.8e+02 Score=25.23 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCC--C--EEEEECCChHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYP--N--MIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~--d--~VvIDFS~p~~~~~~~~ 76 (264)
+|+.+++...+.|..++.. ++... .+++..+++....+ . .+..|++.++.+.+.++
T Consensus 20 iG~~ia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 20 IGLATVELLLEAGASVAIC-GRDEE-------------------RLASAEARLREKFPGARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCHH-------------------HHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHH
Confidence 4788888888788887643 32211 11111222211111 2 24679999999999988
Q ss_pred HHHhc--CCCeEEecCCCC
Q 024671 77 LYSKV--GVPFVMGTTGGD 93 (264)
Q Consensus 77 ~~~~~--g~plViGTTG~~ 93 (264)
.+.+. ++.+||-..|..
T Consensus 80 ~~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHHhcCCCCEEEECCCCC
Confidence 87653 578899888863
No 256
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.31 E-value=77 Score=31.31 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=42.3
Q ss_pred CceeEeecCCchhhHHhhhhcCCCCEEEEEC-----CC------------hHHHHHHHHHHHhcCCCeEE
Q 024671 35 GKEIQVHGLSDRESVLASVFDKYPNMIVVDY-----TV------------PAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 35 ~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDF-----S~------------p~~~~~~~~~~~~~g~plVi 87 (264)
...+.+....+++..++.+.+.+||.||||= |. .+++.+.+++|..+++++++
T Consensus 146 ~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 146 TNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred ccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3456777778899888888888999889993 21 26788999999999999765
No 257
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=40.24 E-value=1.3e+02 Score=26.74 Aligned_cols=38 Identities=11% Similarity=0.280 Sum_probs=24.7
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi 87 (264)
++.+....+|.+++.-+.++.+.+.++.+.+.|+|+|.
T Consensus 75 ~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~ 112 (295)
T PRK10653 75 VQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 (295)
T ss_pred HHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEE
Confidence 33333446785555444455556778888889999885
No 258
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=40.15 E-value=1.2e+02 Score=26.57 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=40.2
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChH-----------
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA----------- 69 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~----------- 69 (264)
.|+.+++.+.+.|+++.+. .+.. .++...+++.++++ ...+| +||++..+.
T Consensus 11 iG~~l~~~l~~~g~~v~~~-~r~~-------------~d~~~~~~~~~~~~---~~~~d-~vi~~a~~~~~~~~~~~~~~ 72 (287)
T TIGR01214 11 LGRELVQQLSPEGRVVVAL-TSSQ-------------LDLTDPEALERLLR---AIRPD-AVVNTAAYTDVDGAESDPEK 72 (287)
T ss_pred HHHHHHHHHHhcCCEEEEe-CCcc-------------cCCCCHHHHHHHHH---hCCCC-EEEECCccccccccccCHHH
Confidence 4889999888889998754 3221 11111233444443 23578 788876431
Q ss_pred -------HHHHHHHHHHhcCCCeEE
Q 024671 70 -------AVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 70 -------~~~~~~~~~~~~g~plVi 87 (264)
.+...++.|.+.+..+|.
T Consensus 73 ~~~~n~~~~~~l~~~~~~~~~~~v~ 97 (287)
T TIGR01214 73 AFAVNALAPQNLARAAARHGARLVH 97 (287)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 245556677777776664
No 259
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=40.00 E-value=99 Score=27.63 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=19.0
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
..| +++|.+..+.+...++.....|.=+.+|+
T Consensus 211 gvd-~vld~~g~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 211 GID-CYFDNVGGEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred CcE-EEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence 356 67777666666666655555555455554
No 260
>PRK12829 short chain dehydrogenase; Provisional
Probab=39.98 E-value=1.6e+02 Score=25.29 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.5
Q ss_pred EEEEECCChHHHHHHHHHHHh--cCCCeEEecCCCC
Q 024671 60 MIVVDYTVPAAVNGNAELYSK--VGVPFVMGTTGGD 93 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~--~g~plViGTTG~~ 93 (264)
.+..|++.++.+.+.++.+.+ .++..|+-..|..
T Consensus 62 ~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 62 ATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred EEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 367899999998888877755 3788888777754
No 261
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=39.89 E-value=97 Score=29.02 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=31.0
Q ss_pred hhhcCCCCEEEEECC--ChHHHHHHHHHHHhcC--CCeEEecCCCCHHHHHHHHH
Q 024671 52 SVFDKYPNMIVVDYT--VPAAVNGNAELYSKVG--VPFVMGTTGGDRVRLHETIE 102 (264)
Q Consensus 52 ~~~~~~~d~VvIDFS--~p~~~~~~~~~~~~~g--~plViGTTG~~~~~~~~l~~ 102 (264)
.+.+..+|.++||++ +++...+.++...+.. +|+++|+. .+.++.+.+.+
T Consensus 101 ~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v-~t~~~A~~l~~ 154 (325)
T cd00381 101 ALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV-VTAEAARDLID 154 (325)
T ss_pred HHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC-CCHHHHHHHHh
Confidence 334456776678887 3455677777777765 66666554 55555555544
No 262
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=39.83 E-value=1.7e+02 Score=28.01 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=16.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcC
Q 024671 1 MGKAVIKAADAAGLELVPVSFG 22 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~ 22 (264)
||..++..+.+.|+++.+ ++.
T Consensus 11 ~G~~lA~~La~~G~~V~~-~d~ 31 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTG-VDI 31 (411)
T ss_pred hhHHHHHHHHhcCCeEEE-EEC
Confidence 788888887788999875 453
No 263
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=39.79 E-value=1.4e+02 Score=28.13 Aligned_cols=48 Identities=10% Similarity=-0.019 Sum_probs=35.1
Q ss_pred CchhhHHhhhhcCC-CCEEEEECCCh-----HHHHHHHHHHHhcCCC----eEEecCCC
Q 024671 44 SDRESVLASVFDKY-PNMIVVDYTVP-----AAVNGNAELYSKVGVP----FVMGTTGG 92 (264)
Q Consensus 44 ~dl~~~l~~~~~~~-~d~VvIDFS~p-----~~~~~~~~~~~~~g~p----lViGTTG~ 92 (264)
.|+...|..+.... +| |||+..+. +.....++.+.+.|.. +.+|+-|+
T Consensus 174 ~d~~~~L~~lk~~~~~~-viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d~~ 231 (382)
T cd06371 174 KGAREALKKVRSADRVR-VVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYDTL 231 (382)
T ss_pred HHHHHHHHHHhcCCCcE-EEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEeccc
Confidence 46667777776655 58 67876654 5667899999999988 67777654
No 264
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=39.75 E-value=66 Score=27.16 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=10.9
Q ss_pred ChHHHHHHHHhCCCe
Q 024671 1 MGKAVIKAADAAGLE 15 (264)
Q Consensus 1 MG~~i~~~~~~~~~e 15 (264)
||..+++.+...|+.
T Consensus 10 lGs~ia~~La~~Gvg 24 (174)
T cd01487 10 LGSNIAVLLARSGVG 24 (174)
T ss_pred HHHHHHHHHHHcCCC
Confidence 588888887766654
No 265
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=39.72 E-value=1.1e+02 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecCC
Q 024671 58 PNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 58 ~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTTG 91 (264)
.|+++||.+- +..+...++.....|.=+++|.++
T Consensus 229 ~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 229 FDQLILETAGVPQTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred CCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCC
Confidence 4546888887 556677777777777767777654
No 266
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=39.70 E-value=2.3e+02 Score=26.86 Aligned_cols=107 Identities=12% Similarity=-0.043 Sum_probs=63.9
Q ss_pred hHHHHHHHHhCCCeEEEE--EcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHH
Q 024671 2 GKAVIKAADAAGLELVPV--SFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~--~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
||.+.+.+.++++.+--. +.......|+.+...+..+.+... ++......| +++= +..+...+....+.
T Consensus 15 G~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l-------~~~~f~~vD-ia~f-ag~~~s~~~ap~a~ 85 (322)
T PRK06901 15 SEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAP-------EEVEWADFN-YVFF-AGKMAQAEHLAQAA 85 (322)
T ss_pred HHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEEC-------CccCcccCC-EEEE-cCHHHHHHHHHHHH
Confidence 899999888887754311 111112345555555556666432 221223577 4443 88899999999999
Q ss_pred hcCCCeEEecCCCCHH--------H--HHHHHHccCCcEEEccchhHH
Q 024671 80 KVGVPFVMGTTGGDRV--------R--LHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 80 ~~g~plViGTTG~~~~--------~--~~~l~~~~~~~~v~s~NfSlG 117 (264)
+.|..+|--+.-|-.+ + -+.+.......++-.||=|.-
T Consensus 86 ~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCsTi 133 (322)
T PRK06901 86 EAGCIVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVS 133 (322)
T ss_pred HCCCEEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHHHH
Confidence 9999888877666211 1 122332223458889996653
No 267
>PRK15447 putative protease; Provisional
Probab=39.60 E-value=1.4e+02 Score=27.59 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=48.2
Q ss_pred chhhHHhhhhcCCCCEEEEE---------CCChHHHHHHHHHHHhcCCCeEEecCCC--CHHHHHHHHHcc--CCcEEEc
Q 024671 45 DRESVLASVFDKYPNMIVVD---------YTVPAAVNGNAELYSKVGVPFVMGTTGG--DRVRLHETIENS--NVYAVIS 111 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvID---------FS~p~~~~~~~~~~~~~g~plViGTTG~--~~~~~~~l~~~~--~~~~v~s 111 (264)
+++.....+.+..+|.|.+. || ++.+.+.++.|.++|+.+++.|.-+ .+++++.+.+.- +...|+.
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~-~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELK-VGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCC-HHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 34444455555568866775 64 4668999999999999999999886 255555544332 2345778
Q ss_pred cchhH
Q 024671 112 PQMGK 116 (264)
Q Consensus 112 ~NfSl 116 (264)
.|++.
T Consensus 95 ~d~g~ 99 (301)
T PRK15447 95 NDLGA 99 (301)
T ss_pred eCHHH
Confidence 88776
No 268
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=39.52 E-value=2.2e+02 Score=23.89 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=39.3
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
.+.++++..+....+|.|++|...|.. -.+.++...+ ..+|+++-|..-+.+..... -..+..-++...++..
T Consensus 36 ~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~-l~~Ga~~~l~kP~~~~ 111 (239)
T PRK09468 36 ANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKGEEVDRIVG-LEIGADDYLPKPFNPR 111 (239)
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHH-HhcCCCeEEECCCCHH
Confidence 445555555555568988999988753 2344444333 35788876654444333222 2334433444455554
No 269
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=39.51 E-value=1e+02 Score=28.22 Aligned_cols=14 Identities=0% Similarity=0.005 Sum_probs=7.8
Q ss_pred CCCeEEecCCCCHH
Q 024671 82 GVPFVMGTTGGDRV 95 (264)
Q Consensus 82 g~plViGTTG~~~~ 95 (264)
++|+++|+++.+.+
T Consensus 70 ~~pvi~gv~~~~t~ 83 (290)
T TIGR00683 70 QIALIAQVGSVNLK 83 (290)
T ss_pred CCcEEEecCCCCHH
Confidence 45666666555443
No 270
>PRK06953 short chain dehydrogenase; Provisional
Probab=39.33 E-value=1.3e+02 Score=25.46 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=44.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.++|.+++.. ++.. +++++ +.. .....+..|+|.++.+...+..+..
T Consensus 13 iG~~la~~L~~~G~~v~~~-~r~~-------------------~~~~~-~~~---~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 13 IGREFVRQYRADGWRVIAT-ARDA-------------------AALAA-LQA---LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred hhHHHHHHHHhCCCEEEEE-ECCH-------------------HHHHH-HHh---ccceEEEecCCCHHHHHHHHHHhcC
Confidence 4888898887788887753 3221 01111 111 1223367899999988887666544
Q ss_pred cCCCeEEecCCCC
Q 024671 81 VGVPFVMGTTGGD 93 (264)
Q Consensus 81 ~g~plViGTTG~~ 93 (264)
.++.+|+-+.|+.
T Consensus 69 ~~~d~vi~~ag~~ 81 (222)
T PRK06953 69 EALDAAVYVAGVY 81 (222)
T ss_pred CCCCEEEECCCcc
Confidence 5688999888874
No 271
>PRK06801 hypothetical protein; Provisional
Probab=39.30 E-value=1.6e+02 Score=27.27 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=13.9
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+.+.+.+.+...++.|.+.+.|+++.+
T Consensus 22 Afn~~n~e~~~avi~AAe~~~~PvIl~~ 49 (286)
T PRK06801 22 AFNVLDSHFLRALFAAAKQERSPFIINI 49 (286)
T ss_pred EEeeCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 4444445555555555555555555444
No 272
>PRK08185 hypothetical protein; Provisional
Probab=39.22 E-value=1.5e+02 Score=27.54 Aligned_cols=10 Identities=0% Similarity=-0.130 Sum_probs=5.8
Q ss_pred ccchhHHHHH
Q 024671 111 SPQMGKQVVA 120 (264)
Q Consensus 111 s~NfSlGv~l 120 (264)
.++++.-=|+
T Consensus 99 ~S~l~~eeNi 108 (283)
T PRK08185 99 GSLLPYEENV 108 (283)
T ss_pred CCCCCHHHHH
Confidence 5566666554
No 273
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=38.95 E-value=2.4e+02 Score=27.15 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=16.6
Q ss_pred HHHHHHHHHccCCcEEEccchhH
Q 024671 94 RVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 94 ~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
.+++.+.++.-+.|++..|=||-
T Consensus 138 ~~e~~~a~~~iGfPcvvKPvMSS 160 (394)
T COG0027 138 LEELRAAVEKIGFPCVVKPVMSS 160 (394)
T ss_pred HHHHHHHHHHcCCCeeccccccc
Confidence 45666677777788888887774
No 274
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=38.93 E-value=1.3e+02 Score=25.75 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=41.8
Q ss_pred hhHHhhhhcCCCCEEEEECCCh----HHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 47 ESVLASVFDKYPNMIVVDYTVP----AAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p----~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
...|++..+...+.+++++.+| .......+...+..+|+|.--+|.-..-=-.++-++. -++.+||..+|.
T Consensus 19 ~~~l~~a~~~~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d-~i~m~p~a~iG~ 93 (178)
T cd07021 19 ERALKEAKEEGADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD-EIYMAPGATIGA 93 (178)
T ss_pred HHHHHHHHhCCCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC-eEEECCCCeEec
Confidence 3444444444455578888877 5556666666667788888777765432222333333 345577777765
No 275
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=38.86 E-value=75 Score=28.69 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=24.0
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
..| ++||++....+...++.+...|.=+.+|++.
T Consensus 212 ~~d-~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~ 245 (324)
T cd08291 212 NAT-IFFDAVGGGLTGQILLAMPYGSTLYVYGYLS 245 (324)
T ss_pred CCc-EEEECCCcHHHHHHHHhhCCCCEEEEEEecC
Confidence 467 7888887777777776666667667777653
No 276
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=38.78 E-value=2.1e+02 Score=27.06 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHhcCCC---eEE--ecCCCC--H-----HHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcC
Q 024671 66 TVPAAVNGNAELYSKVGVP---FVM--GTTGGD--R-----VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP 133 (264)
Q Consensus 66 S~p~~~~~~~~~~~~~g~p---lVi--GTTG~~--~-----~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~ 133 (264)
++.+-+..-++++.+.|.+ +++ ||+++. . ..+..+.+..+.|+-|| -=+.|.. +..+|-.++
T Consensus 143 atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~S-dHt~G~~-----~~~aAvalG 216 (329)
T TIGR03569 143 ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYS-DHTLGIE-----APIAAVALG 216 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEEC-CCCccHH-----HHHHHHHcC
Confidence 4445555556666655654 555 666652 1 12344455455666664 3445531 112232332
Q ss_pred CCCCCCCEEEEeecCCCC
Q 024671 134 GAFSGYSLQVLESHQAGK 151 (264)
Q Consensus 134 ~~~~~~dieI~E~HH~~K 151 (264)
.+ |+|.|-.--
T Consensus 217 -----A~--iIEkH~tld 227 (329)
T TIGR03569 217 -----AT--VIEKHFTLD 227 (329)
T ss_pred -----CC--EEEeCCChh
Confidence 23 888887543
No 277
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=38.69 E-value=62 Score=31.08 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+| +|||.+ +++.-...-++|.++++|+|.|.
T Consensus 132 ~~D-~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 132 QYD-LILDGTDNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred cCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 578 899997 56655666688999999999863
No 278
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=38.68 E-value=3.2e+02 Score=30.67 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=47.5
Q ss_pred HHhhhhcCCCCEEEEECCC---hHHHHHHHHHHHhcC--CCeEEecCCCCHHH-HHHHHHccCCcEEEccchhHHHHHHH
Q 024671 49 VLASVFDKYPNMIVVDYTV---PAAVNGNAELYSKVG--VPFVMGTTGGDRVR-LHETIENSNVYAVISPQMGKQVVAFL 122 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~---p~~~~~~~~~~~~~g--~plViGTTG~~~~~-~~~l~~~~~~~~v~s~NfSlGv~ll~ 122 (264)
.++...+.+||.|.+=+.. .....++++.+.+.+ +|+++|=.=.++.. -.++.....-+.+|+.+-+-+|.+..
T Consensus 794 iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~~~g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA~~~v~~~~ 873 (1229)
T PRK09490 794 ILETAKEENADIIGLSGLITPSLDEMVHVAKEMERQGFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDASRAVGVVS 873 (1229)
T ss_pred HHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHHhcCCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCHHHHHHHHH
Confidence 3444445689966666643 455567777777765 66666643355433 22232222246799999999998887
Q ss_pred HHH
Q 024671 123 AAM 125 (264)
Q Consensus 123 ~~~ 125 (264)
+++
T Consensus 874 ~l~ 876 (1229)
T PRK09490 874 SLL 876 (1229)
T ss_pred HHh
Confidence 765
No 279
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=38.55 E-value=68 Score=27.69 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.0
Q ss_pred ChHHHHHHHHhCCC
Q 024671 1 MGKAVIKAADAAGL 14 (264)
Q Consensus 1 MG~~i~~~~~~~~~ 14 (264)
+|..+++.+...|.
T Consensus 32 lGs~ia~~La~~Gv 45 (202)
T TIGR02356 32 LGSPAALYLAGAGV 45 (202)
T ss_pred HHHHHHHHHHHcCC
Confidence 47788887776665
No 280
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=38.53 E-value=2.4e+02 Score=26.82 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 72 NGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 72 ~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
...++...+ .++|+|+..+|-..++..++-+.+++|+.+-+++.-.+
T Consensus 330 ~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~L~~~Gi~ip~f~~pe~A~ 378 (388)
T PRK00696 330 EGIIAAVKEVGVTVPLVVRLEGTNVELGKKILAESGLNIIAADTLDDAA 378 (388)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHCCCCceecCCHHHHH
Confidence 344444444 68999999999545555554455675544444444444
No 281
>PRK08267 short chain dehydrogenase; Provisional
Probab=38.42 E-value=1.8e+02 Score=25.18 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=45.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.+.|.+++.. ++... .+++....+.......+.+|++.++.+.+.++.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAY-DINEA-------------------GLAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCHH-------------------HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4888998888888877743 32210 111111111111233467899999999998887765
Q ss_pred c---CCCeEEecCCCC
Q 024671 81 V---GVPFVMGTTGGD 93 (264)
Q Consensus 81 ~---g~plViGTTG~~ 93 (264)
. ++..|+-..|..
T Consensus 73 ~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 73 ATGGRLDVLFNNAGIL 88 (260)
T ss_pred HcCCCCCEEEECCCCC
Confidence 3 678888888753
No 282
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=38.38 E-value=1.1e+02 Score=28.44 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=10.0
Q ss_pred hHHHHHHHHhCCCeEEE
Q 024671 2 GKAVIKAADAAGLELVP 18 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~ 18 (264)
|...++.++..|...++
T Consensus 156 G~~aiQlAk~~G~~~v~ 172 (326)
T COG0604 156 GSAAIQLAKALGATVVA 172 (326)
T ss_pred HHHHHHHHHHcCCcEEE
Confidence 56667676666644443
No 283
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=38.19 E-value=1e+02 Score=30.18 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=39.2
Q ss_pred chhhHHhhhhcCCCCEEEEECCCh--HHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHc
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVP--AAVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIEN 103 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p--~~~~~~~~~~~~~--g~plViGTTG~~~~~~~~l~~~ 103 (264)
+++.+ ..+.+..+|++.||.+++ ..+.+.++...+. .+|++.|+ ..+.++.+.+.++
T Consensus 225 ~~~r~-~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~-v~t~~~a~~l~~a 285 (450)
T TIGR01302 225 DKERA-EALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN-VATAEQAKALIDA 285 (450)
T ss_pred HHHHH-HHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHHHh
Confidence 34443 344456789889999865 5677778777765 57777766 5788877777664
No 284
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=38.05 E-value=1.6e+02 Score=27.32 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=5.3
Q ss_pred CCcE-EEccchhH
Q 024671 105 NVYA-VISPQMGK 116 (264)
Q Consensus 105 ~~~~-v~s~NfSl 116 (264)
++++ ++-|+++-
T Consensus 252 ~v~~If~e~~~~~ 264 (311)
T PRK09545 252 KATCVFAEPQFRP 264 (311)
T ss_pred CCCEEEecCCCCh
Confidence 3443 33455544
No 285
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=37.99 E-value=1.6e+02 Score=27.24 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=10.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhc
Q 024671 111 SPQMGKQVVAFLAAMEIMAEQF 132 (264)
Q Consensus 111 s~NfSlGv~ll~~~~~~aa~~l 132 (264)
+|.+++-=|+ +..++++++.
T Consensus 105 gS~lp~eeNi--~~T~~vv~~A 124 (284)
T PRK12737 105 GSHLSFEENI--AIVKEVVEFC 124 (284)
T ss_pred CCCCCHHHHH--HHHHHHHHHH
Confidence 4556666565 3445555544
No 286
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=37.95 E-value=3.5e+02 Score=25.49 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=57.8
Q ss_pred hHHHHHHHHh---CCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHH
Q 024671 2 GKAVIKAADA---AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 2 G~~i~~~~~~---~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
|+++++.+.+ +..+|+..... ...|+.+...+..+++...+. . ++ ...| +++=.+-+....+.++.+
T Consensus 17 G~eLlrlL~~~~hP~~~l~~v~s~--~~aG~~l~~~~~~l~~~~~~~-~----~~--~~vD-~vFla~p~~~s~~~v~~~ 86 (336)
T PRK05671 17 GEALVQILEERDFPVGTLHLLASS--ESAGHSVPFAGKNLRVREVDS-F----DF--SQVQ-LAFFAAGAAVSRSFAEKA 86 (336)
T ss_pred HHHHHHHHhhCCCCceEEEEEECc--ccCCCeeccCCcceEEeeCCh-H----Hh--cCCC-EEEEcCCHHHHHHHHHHH
Confidence 8899998874 45566554322 234555433333344432221 1 11 2578 444445556788888888
Q ss_pred HhcCCCeEEec------------CCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 79 SKVGVPFVMGT------------TGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 79 ~~~g~plViGT------------TG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
.+.|+.+|--+ ..++.++++.+ .+..++-.||=+--
T Consensus 87 ~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~---~~~~iIAnPgC~~t 134 (336)
T PRK05671 87 RAAGCSVIDLSGALPSAQAPNVVPEVNAERLASL---AAPFLVSSPSASAV 134 (336)
T ss_pred HHCCCeEEECchhhcCCCCCEEecccCHHHHccc---cCCCEEECCCcHHH
Confidence 89999877444 33344444322 23468889995443
No 287
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=37.95 E-value=1.5e+02 Score=27.25 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=26.1
Q ss_pred hHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE
Q 024671 48 SVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 48 ~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi 87 (264)
+.+..+....+|.++|--..++...+.++.+.+.++|+|+
T Consensus 72 ~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~ 111 (330)
T PRK10355 72 SQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLA 111 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCeEEE
Confidence 3455555567995555433344456778888899999774
No 288
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=37.90 E-value=62 Score=27.94 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=17.7
Q ss_pred CCCEEEEECCCh-HHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYTVP-AAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS~p-~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+.+ +.....-++|.++++|+|.+.|
T Consensus 113 ~~d-vVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 113 KFT-LVIATEENYERTAKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 355 55665533 3334455566666666665544
No 289
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=37.89 E-value=1.7e+02 Score=26.41 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=34.1
Q ss_pred cCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCH
Q 024671 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR 94 (264)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~ 94 (264)
...+|.++|.=..|.++...++.+.+.|+|+|.=-+....
T Consensus 89 a~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~ 128 (322)
T COG1879 89 AQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPG 128 (322)
T ss_pred HcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCC
Confidence 3578878899999999999999999999999987666543
No 290
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=37.86 E-value=94 Score=28.13 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred HHHhcCCCeE--Ee-cCCC--CHHHHHHH---HHccCCcE-EEccchhH
Q 024671 77 LYSKVGVPFV--MG-TTGG--DRVRLHET---IENSNVYA-VISPQMGK 116 (264)
Q Consensus 77 ~~~~~g~plV--iG-TTG~--~~~~~~~l---~~~~~~~~-v~s~NfSl 116 (264)
++...|+..+ ++ .+|- +..++.++ .+..++++ ++.|+++-
T Consensus 184 ~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~ 232 (282)
T cd01017 184 LARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASS 232 (282)
T ss_pred HHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh
Confidence 4455677743 12 1232 34444443 33345655 55677765
No 291
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=37.85 E-value=1.1e+02 Score=28.31 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=17.4
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +++|++- +..+...++.+.+.|.=+.+|+.
T Consensus 254 ~~d-~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 254 GVD-YALDTTGVPAVIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred CCc-EEEECCCCcHHHHHHHHHhccCCEEEEeCcC
Confidence 455 5666652 44555555555455554445554
No 292
>PRK05993 short chain dehydrogenase; Provisional
Probab=37.71 E-value=1.4e+02 Score=26.32 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.++|.+++.. ++.. +.++ .+.....+.+..|++.++.+...++.+.+
T Consensus 16 iG~~la~~l~~~G~~Vi~~-~r~~-------------------~~~~----~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 16 IGAYCARALQSDGWRVFAT-CRKE-------------------EDVA----ALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCH-------------------HHHH----HHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 4888888887788887753 2221 1111 11111334456899999999888888755
Q ss_pred c---CCCeEEecCCC
Q 024671 81 V---GVPFVMGTTGG 92 (264)
Q Consensus 81 ~---g~plViGTTG~ 92 (264)
. ++.+|+-..|+
T Consensus 72 ~~~g~id~li~~Ag~ 86 (277)
T PRK05993 72 LSGGRLDALFNNGAY 86 (277)
T ss_pred HcCCCccEEEECCCc
Confidence 2 57888887775
No 293
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=37.69 E-value=1.3e+02 Score=28.62 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=35.7
Q ss_pred chhhHHhhhhc-CCCCEEEEECCChHHHHHHHHHHHhcCC---CeEEecCCCCH
Q 024671 45 DRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYSKVGV---PFVMGTTGGDR 94 (264)
Q Consensus 45 dl~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~~~g~---plViGTTG~~~ 94 (264)
|....+.++.. ..++ |||=|+.++.+...++.+.+.|. -..+|+.||..
T Consensus 217 d~~~~l~~l~~~~~a~-viil~~~~~~~~~~~~~a~~~g~~~~~~~i~~~~~~~ 269 (452)
T cd06362 217 EFDNIIRKLLSKPNAR-VVVLFCREDDIRGLLAAAKRLNAEGHFQWIASDGWGA 269 (452)
T ss_pred HHHHHHHHHhhcCCCe-EEEEEcChHHHHHHHHHHHHcCCcCceEEEEeccccc
Confidence 55555665543 3578 56667777888899999999888 36789999864
No 294
>PRK05693 short chain dehydrogenase; Provisional
Probab=37.62 E-value=1.7e+02 Score=25.67 Aligned_cols=68 Identities=28% Similarity=0.290 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.+.|++++.. ++... ++++ +. ......+..|++.++.+.+.++.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~-~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 13 IGRALADAFKAAGYEVWAT-ARKAE-------------------DVEA-LA---AAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHH-HH---HCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 4888898888788887753 32210 1111 11 11234356899999999999988865
Q ss_pred c--CCCeEEecCCC
Q 024671 81 V--GVPFVMGTTGG 92 (264)
Q Consensus 81 ~--g~plViGTTG~ 92 (264)
. ++.+|+=..|.
T Consensus 69 ~~~~id~vi~~ag~ 82 (274)
T PRK05693 69 EHGGLDVLINNAGY 82 (274)
T ss_pred hcCCCCEEEECCCC
Confidence 3 57888888885
No 295
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=37.60 E-value=1.3e+02 Score=25.71 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=29.6
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC-CeEEecCCCCHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV-PFVMGTTGGDRV 95 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~-plViGTTG~~~~ 95 (264)
+....+.++....+| ++|=++.+......++.+.+.|. +.++|+.++..+
T Consensus 178 ~~~~~~~~l~~~~~~-~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 228 (298)
T cd06268 178 DFSPLIAKLKAAGPD-AVFLAGYGGDAALFLKQAREAGLKVPIVGGDGAAAP 228 (298)
T ss_pred cHHHHHHHHHhcCCC-EEEEccccchHHHHHHHHHHcCCCCcEEecCccCCH
Confidence 444445555545677 55666666667777777777773 345555555443
No 296
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.48 E-value=1.7e+02 Score=24.67 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc--CCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...+.|++++..+.+... .+++....+.. .....+-.|++.|+.+...++.+
T Consensus 17 iG~~la~~l~~~g~~v~~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 17 IGRAIAELLAKEGAKVVIAYDINEE-------------------AAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQI 77 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4788888777778887754233211 11111111111 12233457999999988888776
Q ss_pred Hhc--CCCeEEecCCCC
Q 024671 79 SKV--GVPFVMGTTGGD 93 (264)
Q Consensus 79 ~~~--g~plViGTTG~~ 93 (264)
.+. ++..|+-..|..
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 78 VEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHhCCCCEEEECCCcC
Confidence 553 688999888764
No 297
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.47 E-value=1.1e+02 Score=30.17 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcC--CCeEEecCCCCH---HHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEe
Q 024671 71 VNGNAELYSKVG--VPFVMGTTGGDR---VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLE 145 (264)
Q Consensus 71 ~~~~~~~~~~~g--~plViGTTG~~~---~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E 145 (264)
.-.+..|+.+.| +-+|+|-| |-. +|++..++.+++|+.-|..-+==+ +++.+..+.+.+ ++||+=|++
T Consensus 118 c~KlA~y~kkkG~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~ygsyte~dpv----~ia~egv~~fKk--e~fdvIIvD 190 (483)
T KOG0780|consen 118 CTKLAYYYKKKGYKVALVCADT-FRAGAFDQLKQNATKARVPFYGSYTEADPV----KIASEGVDRFKK--ENFDVIIVD 190 (483)
T ss_pred HHHHHHHHHhcCCceeEEeecc-cccchHHHHHHHhHhhCCeeEecccccchH----HHHHHHHHHHHh--cCCcEEEEe
Confidence 445555666655 45788777 533 577777888889887765554444 333344455543 789999999
Q ss_pred ecCCCCCCC
Q 024671 146 SHQAGKLDT 154 (264)
Q Consensus 146 ~HH~~K~Da 154 (264)
+--|+|.++
T Consensus 191 TSGRh~qe~ 199 (483)
T KOG0780|consen 191 TSGRHKQEA 199 (483)
T ss_pred CCCchhhhH
Confidence 988888874
No 298
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=37.38 E-value=50 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=22.8
Q ss_pred EEECCCh--------HHHHHHHHHHHhcCCCeEEecCCCCHHHHHH
Q 024671 62 VVDYTVP--------AAVNGNAELYSKVGVPFVMGTTGGDRVRLHE 99 (264)
Q Consensus 62 vIDFS~p--------~~~~~~~~~~~~~g~plViGTTG~~~~~~~~ 99 (264)
+|||+.. +.+.+..+.|.+.|-=.|+++ |.+.+.++.
T Consensus 40 vIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nh-Gi~~elid~ 84 (120)
T PLN03176 40 VISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDH-GVDAKLVSE 84 (120)
T ss_pred eEECccccCCchHHHHHHHHHHHHHHHCCEEEEECC-CCCHHHHHH
Confidence 7888853 245566666666776666663 666654444
No 299
>PRK07478 short chain dehydrogenase; Provisional
Probab=37.37 E-value=1.9e+02 Score=24.85 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=44.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...+.|..++.. ++.. +++++..+++.....+ .+..|++.++.+...++..
T Consensus 18 iG~~ia~~l~~~G~~v~~~-~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVG-ARRQ-------------------AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4788888887788887643 3221 1112222222111222 3457999999999888877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..||-..|.
T Consensus 78 ~~~~~~id~li~~ag~ 93 (254)
T PRK07478 78 VERFGGLDIAFNNAGT 93 (254)
T ss_pred HHhcCCCCEEEECCCC
Confidence 664 57788877775
No 300
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=37.31 E-value=45 Score=30.26 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCC--eEEecCC----CCHHHHHH
Q 024671 69 AAVNGNAELYSKVGVP--FVMGTTG----GDRVRLHE 99 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~p--lViGTTG----~~~~~~~~ 99 (264)
+++.++++++.+.|+. +|.|||| ++.+|..+
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~ 58 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKE 58 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHH
Confidence 6788888888888876 4457887 35555444
No 301
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.28 E-value=1.3e+02 Score=27.12 Aligned_cols=100 Identities=21% Similarity=0.158 Sum_probs=59.8
Q ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhcCCCeE-EecCC--CCHHHHHHHHHccCCcEE-------EccchhHHHHHHHHH
Q 024671 56 KYPNMIVVDYT-VPAAVNGNAELYSKVGVPFV-MGTTG--GDRVRLHETIENSNVYAV-------ISPQMGKQVVAFLAA 124 (264)
Q Consensus 56 ~~~d~VvIDFS-~p~~~~~~~~~~~~~g~plV-iGTTG--~~~~~~~~l~~~~~~~~v-------~s~NfSlGv~ll~~~ 124 (264)
..+| ++|=++ +|+-++...+.+.+.+...| ++++- +-.+|+++.+++.++-+. +-||= ---+.++
T Consensus 54 ~e~D-i~va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~---~p~i~~F 129 (224)
T COG1810 54 PEAD-IVVAYGLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNE---NPHIDEF 129 (224)
T ss_pred CCCC-EEEEeccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCC---ChHHHHH
Confidence 3567 899995 99999999999888886644 44421 224577777775443332 23443 1122333
Q ss_pred HHHHHHhcCCCCCCCCEEE-----EeecCCCCCCC-cHHHHHHHHHHHh
Q 024671 125 MEIMAEQFPGAFSGYSLQV-----LESHQAGKLDT-SGTAKAVISCFQK 167 (264)
Q Consensus 125 ~~~aa~~l~~~~~~~dieI-----~E~HH~~K~Da-SGTAl~l~~~i~~ 167 (264)
++.|+. |...||+ ... .-+++| -|.+.-+|+.+..
T Consensus 130 ----~e~FG~--P~vevev~~~~i~~V--~V~RsaPCGsT~~vAk~l~G 170 (224)
T COG1810 130 ----AERFGK--PEVEVEVENGKIKDV--DVLRSAPCGSTWYVAKRLVG 170 (224)
T ss_pred ----HHHcCC--ceEEEEecCCeEEEE--EEEecCCCchHHHHHHHhcC
Confidence 344542 3444443 222 245667 9988888887754
No 302
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.26 E-value=1.6e+02 Score=25.04 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=26.4
Q ss_pred EEEECCChHHHHHHHHHHHhc--CCCeEEecCCCC
Q 024671 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGGD 93 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~plViGTTG~~ 93 (264)
+..|++.++.+...++.+.+. ++..|+-+.|..
T Consensus 61 ~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 61 ATADVSDYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 467999999999988877653 688999888863
No 303
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=37.17 E-value=1.8e+02 Score=25.22 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=45.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc-CCCCEEEEECCChHHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYS 79 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~ 79 (264)
+|+.+++...++|..++.. ++... .+++..+++.. .....+-.|.+.++.+.+.++.+.
T Consensus 12 IG~aia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 12 IGFNVARELLKKGARVVIS-SRNEE-------------------NLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred HHHHHHHHHHHcCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 5889998888888887643 32211 11122222211 112235689999999999988876
Q ss_pred hc--CCCeEEecCCC
Q 024671 80 KV--GVPFVMGTTGG 92 (264)
Q Consensus 80 ~~--g~plViGTTG~ 92 (264)
+. ++.+||-..|.
T Consensus 72 ~~~g~id~li~naG~ 86 (259)
T PRK08340 72 ELLGGIDALVWNAGN 86 (259)
T ss_pred HhcCCCCEEEECCCC
Confidence 53 57899988885
No 304
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=37.17 E-value=87 Score=27.02 Aligned_cols=80 Identities=5% Similarity=0.038 Sum_probs=41.8
Q ss_pred chhhHHhhhhcCCCCEEEEE----CCChHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 45 DRESVLASVFDKYPNMIVVD----YTVPAAVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvID----FS~p~~~~~~~~~~~~~--g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
+.+++++.+.+..||+|++| +..|... +.++...+. +.++|+=| +.+..+............+++-+++.-.
T Consensus 35 ~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~-~~i~~i~~~~p~~~iivlt-~~~~~~~~~~~~~~~~~~~~~K~~~~~~ 112 (207)
T PRK15411 35 TVDDLAIACDSLRPSVVFINEDCFIHDASNS-QRIKQIINQHPNTLFIVFM-AIANIHFDEYLLVRKNLLISSKSIKPES 112 (207)
T ss_pred CHHHHHHHHhccCCCEEEEeCcccCCCCChH-HHHHHHHHHCCCCeEEEEE-CCCchhHHHHHHHHhhceeeeccCCHHH
Confidence 34444554455679988999 6667655 566666553 46777766 4443332222111111123455666643
Q ss_pred HHHHHHHHHH
Q 024671 119 VAFLAAMEIM 128 (264)
Q Consensus 119 ~ll~~~~~~a 128 (264)
+.+.++.+
T Consensus 113 --L~~aI~~v 120 (207)
T PRK15411 113 --LDDLLGDI 120 (207)
T ss_pred --HHHHHHHH
Confidence 33444444
No 305
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=37.10 E-value=1.6e+02 Score=27.26 Aligned_cols=28 Identities=7% Similarity=-0.065 Sum_probs=12.4
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+.+.+.+.+...++.|.+.+.|+++.+
T Consensus 22 AfN~~n~e~~~avi~aAe~~~sPvIlq~ 49 (293)
T PRK07315 22 GFNTNNLEWTQAILRAAEAKKAPVLIQT 49 (293)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEEEEc
Confidence 3444444444444444444444444443
No 306
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=37.04 E-value=3.5e+02 Score=25.16 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=35.7
Q ss_pred cCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE-----ecCCC-CHHHHHHHHHccCCcEEEccchhHHH
Q 024671 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM-----GTTGG-DRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi-----GTTG~-~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
+..+|.|.|.. |....+.-+++.+.++|++. |.|++ +.+++ .+ .++..+.-||..+-.
T Consensus 177 eAGAD~ifi~~--~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L---~~-lGv~~v~~~~~~~~a 240 (292)
T PRK11320 177 EAGADMIFPEA--MTELEMYRRFADAVKVPILANITEFGATPLFTTEEL---AS-AGVAMVLYPLSAFRA 240 (292)
T ss_pred HcCCCEEEecC--CCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHH---HH-cCCcEEEEChHHHHH
Confidence 45689778876 44556666667677889854 44442 44444 33 367777777766543
No 307
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=36.96 E-value=1.5e+02 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=26.5
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.+++--+.+....+.++.+.+ ++|+|+-
T Consensus 48 i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~ 85 (271)
T cd06314 48 LEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITT 85 (271)
T ss_pred HHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe
Confidence 4444456788666665666666778888777 9998874
No 308
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.87 E-value=3.2e+02 Score=24.63 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=36.1
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCHHH
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVR 96 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~~~ 96 (264)
..|....+.++....|| +||=+..+..+...++.+.+.|.. -++|++++....
T Consensus 176 ~~d~~~~v~~l~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 229 (340)
T cd06349 176 EKDFRPTITRLRDANPD-AIILISYYNDGAPIARQARAVGLDIPVVASSSVYSPK 229 (340)
T ss_pred CCcHHHHHHHHHhcCCC-EEEEccccchHHHHHHHHHHcCCCCcEEccCCcCCHH
Confidence 34666666777777899 455566677777889998887763 566776664433
No 309
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=36.71 E-value=1.9e+02 Score=26.04 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=17.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~ 23 (264)
||+.+++.+.+.|+++.. .++.
T Consensus 10 mG~~iA~~l~~~G~~V~~-~dr~ 31 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHV-TTIG 31 (291)
T ss_pred HHHHHHHHHHHCCCeEEE-EcCC
Confidence 899999988888999874 4543
No 310
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=36.71 E-value=1.8e+02 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=17.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~ 23 (264)
||..+++.+.+.|+++.. .++.
T Consensus 11 mG~~la~~L~~~g~~V~~-~dr~ 32 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVG-YDHD 32 (298)
T ss_pred HHHHHHHHHHHCCCEEEE-EECC
Confidence 899999888888999875 5543
No 311
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=36.66 E-value=1.1e+02 Score=27.83 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHh-cCCC--eEEecCC
Q 024671 69 AAVNGNAELYSK-VGVP--FVMGTTG 91 (264)
Q Consensus 69 ~~~~~~~~~~~~-~g~p--lViGTTG 91 (264)
+++..+++++.+ .|+. +|.||||
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstG 49 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTG 49 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcc
Confidence 566677777776 6665 4567777
No 312
>PLN02827 Alcohol dehydrogenase-like
Probab=36.62 E-value=1e+02 Score=28.91 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=22.5
Q ss_pred CCCEEEEECCCh-HHHHHHHHHHHhc-CCCeEEecCC
Q 024671 57 YPNMIVVDYTVP-AAVNGNAELYSKV-GVPFVMGTTG 91 (264)
Q Consensus 57 ~~d~VvIDFS~p-~~~~~~~~~~~~~-g~plViGTTG 91 (264)
..| ++||++-. ..+...++.+... |.=+++|.+.
T Consensus 263 g~d-~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~ 298 (378)
T PLN02827 263 GAD-YSFECVGDTGIATTALQSCSDGWGLTVTLGVPK 298 (378)
T ss_pred CCC-EEEECCCChHHHHHHHHhhccCCCEEEEECCcC
Confidence 467 68888763 4566677766665 6666677654
No 313
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=36.62 E-value=3e+02 Score=24.24 Aligned_cols=110 Identities=11% Similarity=0.042 Sum_probs=54.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc-CC-CCEEEEECCC-----hHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD-KY-PNMIVVDYTV-----PAAVNG 73 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~-~~-~d~VvIDFS~-----p~~~~~ 73 (264)
.|+.+++.+.+.|+++.+.+ +.+..... .++.....++..++.+..++..... .. +| .++-.+. ......
T Consensus 11 iG~~vv~~L~~~g~~V~~~~-R~~~~~~~-~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d-~v~~~~~~~~~~~~~~~~ 87 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVAS-RSSSSSAG-PNEKHVKFDWLDEDTWDNPFSSDDGMEPEIS-AVYLVAPPIPDLAPPMIK 87 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEe-CCCccccC-CCCccccccCCCHHHHHHHHhcccCcCCcee-EEEEeCCCCCChhHHHHH
Confidence 48899998888899987653 32211100 1111112233333344444321000 13 56 3443322 245677
Q ss_pred HHHHHHhcCCCeEEecCCCC-------HHHHHHHHHc-cCCcE-EEccc
Q 024671 74 NAELYSKVGVPFVMGTTGGD-------RVRLHETIEN-SNVYA-VISPQ 113 (264)
Q Consensus 74 ~~~~~~~~g~plViGTTG~~-------~~~~~~l~~~-~~~~~-v~s~N 113 (264)
.++.|.+.|++-|+-++... ....++..+. ++++. ++-|+
T Consensus 88 ~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~ 136 (285)
T TIGR03649 88 FIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT 136 (285)
T ss_pred HHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence 88999999987665544321 1123333333 36665 56665
No 314
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=36.62 E-value=89 Score=33.23 Aligned_cols=63 Identities=8% Similarity=0.128 Sum_probs=48.7
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCCC----CH--HHHHHHHHccCCcEEEccchhHHHHHHH
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG----DR--VRLHETIENSNVYAVISPQMGKQVVAFL 122 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~----~~--~~~~~l~~~~~~~~v~s~NfSlGv~ll~ 122 (264)
.|+||.|.-+-.......|+++|+++|..--.. .. +++.+++++.+..+.|.++..=|+-++.
T Consensus 543 ~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~ 611 (810)
T PRK09466 543 LVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINH 611 (810)
T ss_pred cEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHH
Confidence 389999988777777889999999999987753 11 3566667777788899998888876643
No 315
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=36.41 E-value=1.7e+02 Score=27.71 Aligned_cols=12 Identities=0% Similarity=-0.130 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 024671 118 VVAFLAAMEIMA 129 (264)
Q Consensus 118 v~ll~~~~~~aa 129 (264)
+|++.+++..+.
T Consensus 186 ln~ak~L~~~l~ 197 (319)
T PRK04452 186 INLAKQLNILLT 197 (319)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 316
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=36.36 E-value=1.1e+02 Score=27.57 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=35.3
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC---CeEEecCCCCHHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV---PFVMGTTGGDRVRLHETI 101 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~---plViGTTG~~~~~~~~l~ 101 (264)
.|....+.++....||.|++ .+.+..+...++.+.+.|. ..+.+++ +....+..+.
T Consensus 177 ~d~~~~v~~l~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~ 235 (334)
T cd06327 177 SDFSSYLLQAQASGADVLVL-ANAGADTVNAIKQAAEFGLTKGQKLAGLL-LFLTDVHSLG 235 (334)
T ss_pred ccHHHHHHHHHhCCCCEEEE-eccchhHHHHHHHHHHhCCccCCcEEEec-ccHHHHHhhc
Confidence 46666666777778995444 5556666678889988887 3444544 4444554443
No 317
>PF13466 STAS_2: STAS domain
Probab=36.34 E-value=1.3e+02 Score=21.32 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=27.3
Q ss_pred chhhHHhhhhcCCCCEEEEECCChH--------HHHHHHHHHHhcCCCeEEecCCCCHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPA--------AVNGNAELYSKVGVPFVMGTTGGDRV 95 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~--------~~~~~~~~~~~~g~plViGTTG~~~~ 95 (264)
.+...+.+..+...+ |+||||.-+ .+....+.+.+.|.++.+ +|.++.
T Consensus 14 ~l~~~l~~~~~~~~~-v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l--~~~~~~ 69 (80)
T PF13466_consen 14 ELRQALQALLASGRP-VVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRL--TGPSPA 69 (80)
T ss_pred HHHHHHHHHHcCCCe-EEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEE--EcCCHH
Confidence 334444444333334 789998753 345555666667777766 556554
No 318
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.34 E-value=1.9e+02 Score=24.93 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=26.4
Q ss_pred CEEEEECCChHHHHHHHHHHHhc--CCCeEEecCCC
Q 024671 59 NMIVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (264)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~--g~plViGTTG~ 92 (264)
..+..|.+.++.+.+.++.+.+. ++..||-..|.
T Consensus 54 ~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 54 FTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 34578999999999998887664 57788877775
No 319
>PF06074 DUF935: Protein of unknown function (DUF935); InterPro: IPR009279 This entry is represented by Bacteriophage Mu, Gp29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu Gp29 protein Q9T1W5 from SWISSPROT.
Probab=36.26 E-value=64 Score=32.15 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCeEEecCCC--CHHHHHHHHHc----cC-CcEEEccchhH
Q 024671 70 AVNGNAELYSKVGVPFVMGTTGG--DRVRLHETIEN----SN-VYAVISPQMGK 116 (264)
Q Consensus 70 ~~~~~~~~~~~~g~plViGTTG~--~~~~~~~l~~~----~~-~~~v~s~NfSl 116 (264)
.+...+.+|-++|.|+++|+++- ++++.+.+.++ .. ..++++.+++|
T Consensus 222 ~~~~w~~f~E~yG~P~~vgky~~~a~~~e~~~L~~al~~~g~~a~~iip~~~~I 275 (516)
T PF06074_consen 222 GLKDWAEFLEKYGMPIRVGKYPPGASDEEKDALLRALANMGSDAAAIIPEGMEI 275 (516)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHHHhccCeEEEeCCCCeE
Confidence 34667889999999999999986 45555555333 22 34566555543
No 320
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=35.95 E-value=93 Score=27.64 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCeEEec--CCCCHHHHHHHHHccCC--cE--EEccchhHHH
Q 024671 70 AVNGNAELYSKVGVPFVMGT--TGGDRVRLHETIENSNV--YA--VISPQMGKQV 118 (264)
Q Consensus 70 ~~~~~~~~~~~~g~plViGT--TG~~~~~~~~l~~~~~~--~~--v~s~NfSlGv 118 (264)
.+.+.++.+.++|+++++.| ||-+.+++....+.-+. +. +++||.++.-
T Consensus 21 ~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~ 75 (249)
T TIGR01457 21 EAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATAD 75 (249)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHH
Confidence 36788888999999999988 67887776554444443 32 7788877654
No 321
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=35.94 E-value=2e+02 Score=28.04 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=39.4
Q ss_pred CCCCEEEEEC-C-ChH-------HHHHHHHHH-HhcCCCeEEecCCC---CHHHHHHHHHc-cC-CcEEEccchhH
Q 024671 56 KYPNMIVVDY-T-VPA-------AVNGNAELY-SKVGVPFVMGTTGG---DRVRLHETIEN-SN-VYAVISPQMGK 116 (264)
Q Consensus 56 ~~~d~VvIDF-S-~p~-------~~~~~~~~~-~~~g~plViGTTG~---~~~~~~~l~~~-~~-~~~v~s~NfSl 116 (264)
..+|.|.|-. | .|+ ...+.++.. ...++|+|++.||- +.+-+++..+. .+ .|+++|.|.-.
T Consensus 152 ~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~ 227 (389)
T TIGR00381 152 FGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL 227 (389)
T ss_pred hCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh
Confidence 4577444444 3 366 666666665 45899999999975 34445554333 44 78899998764
No 322
>PRK09581 pleD response regulator PleD; Reviewed
Probab=35.89 E-value=2.1e+02 Score=26.56 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=35.1
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHhc----CCCeEEecCCCCHHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSKV----GVPFVMGTTGGDRVRLHETI 101 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~~----g~plViGTTG~~~~~~~~l~ 101 (264)
++.++++..+....+|.|++|...|.. ..+.++...+. .+|+|+-|+.-+.+......
T Consensus 33 ~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~ 95 (457)
T PRK09581 33 SSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGL 95 (457)
T ss_pred CCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHH
Confidence 445555555555678988999998763 34455554442 46777776655554444333
No 323
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.86 E-value=64 Score=30.99 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCCHH----HHHHHHHccC
Q 024671 69 AAVNGNAELYSKVGVPFVMGTTGGDRV----RLHETIENSN 105 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~plViGTTG~~~~----~~~~l~~~~~ 105 (264)
+.+...++.|.++|+|+|+++-|.++. .++++++..+
T Consensus 58 ~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~G 98 (362)
T PF07287_consen 58 RDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELG 98 (362)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 467889999999999999999999875 3555655544
No 324
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=35.82 E-value=2.4e+02 Score=22.99 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=37.6
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh----cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK----VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~----~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
+.++++..+....+|.|++|...|.. -.+.++...+ ...|+++-| +....+...-+-.++..-++..+++..
T Consensus 34 ~~~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 110 (226)
T TIGR02154 34 DGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLT-ARGEEEDRVRGLETGADDYITKPFSPR 110 (226)
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEe-cCCCHHHHHHHHhcCcceEEeCCCCHH
Confidence 44444554445568988999887753 2344444443 246777755 443322222222344444555556554
No 325
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=35.80 E-value=2.6e+02 Score=23.26 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=37.0
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh----cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK----VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~----~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
+.++++..+....+|.|++|...|.. -.+.++...+ ..+|+++-|.--+.+...... .++..-++.-.++.-
T Consensus 34 ~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~ 110 (229)
T PRK10161 34 DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGL-ETGADDYITKPFSPK 110 (229)
T ss_pred CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHH-HcCCCEEEECCCCHH
Confidence 44445554445568988999887752 2344444433 356777755333333332222 334433444455553
No 326
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=35.48 E-value=98 Score=28.72 Aligned_cols=59 Identities=20% Similarity=0.139 Sum_probs=34.1
Q ss_pred chhhHHhhhhcCCCCEEEEEC--------CChHHHHHHHHHHHh-cCCCeEE-ecCCCCHHHHHHHHHc
Q 024671 45 DRESVLASVFDKYPNMIVVDY--------TVPAAVNGNAELYSK-VGVPFVM-GTTGGDRVRLHETIEN 103 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDF--------S~p~~~~~~~~~~~~-~g~plVi-GTTG~~~~~~~~l~~~ 103 (264)
|.+++..=.....+|...|-| ..|.--.+.++...+ .++|||. |+||..++++++..+.
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~ 224 (286)
T PRK12738 156 DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIEL 224 (286)
T ss_pred CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc
Confidence 444443333334567555665 234444444443332 4889887 8999988888766543
No 327
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=35.29 E-value=1.6e+02 Score=27.06 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=13.0
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+++.+.+.+...++.|.+.+.|+++.+
T Consensus 20 Afn~~n~e~~~avi~aAe~~~~PvIl~~ 47 (282)
T TIGR01859 20 AFNFNNLEWTQAILEAAEEENSPVIIQV 47 (282)
T ss_pred EEEECCHHHHHHHHHHHHHhCCCEEEEc
Confidence 4444444444444444444444444443
No 328
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=35.28 E-value=1.4e+02 Score=28.41 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=52.8
Q ss_pred ChHHHHHHHH-h--CCCeEEEEEcCCC--------------ccc-------cccccccCceeEeecCCchhhHHhhhhcC
Q 024671 1 MGKAVIKAAD-A--AGLELVPVSFGTE--------------EES-------GQKVEVCGKEIQVHGLSDRESVLASVFDK 56 (264)
Q Consensus 1 MG~~i~~~~~-~--~~~eLv~~~~~~~--------------~~~-------g~~~~~~~~~i~i~~~~dl~~~l~~~~~~ 56 (264)
+||.+.+++. . .++++|++-+... +.. +..+.+.+..|.+....|+++. ...+.
T Consensus 12 IGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~--~W~~~ 89 (337)
T PRK07403 12 IGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRNPLNL--PWKEW 89 (337)
T ss_pred HHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCCcccC--Chhhc
Confidence 4899999876 4 4799997644110 000 1111233445666543333321 12223
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
..| ++++.|-.....+.....++.|...|+=+
T Consensus 90 gvD-iV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 90 GID-LIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CCC-EEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 678 89999988888888888888898777765
No 329
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=35.28 E-value=1.3e+02 Score=27.61 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=47.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc---CCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD---KYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~---~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
.|+++++....+|+.|+-. .+.. +.|++.-+++.+ ..++++-+|.|.|+.+......
T Consensus 18 IG~~~A~~lA~~g~~liLv-aR~~-------------------~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 18 IGAELAKQLARRGYNLILV-ARRE-------------------DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCcH-------------------HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHH
Confidence 3889999888889888743 2221 112222222222 2356678999999999999988
Q ss_pred HHhc--CCCeEEecCCC
Q 024671 78 YSKV--GVPFVMGTTGG 92 (264)
Q Consensus 78 ~~~~--g~plViGTTG~ 92 (264)
.... .+.+.|=--|+
T Consensus 78 l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 78 LKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHhcCCcccEEEECCCc
Confidence 7776 67788765554
No 330
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=35.24 E-value=1e+02 Score=24.15 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=34.8
Q ss_pred EECCChHHHHHHHHHHHhcCCCeEEecCCCCHH---HHHHHHHccCCcEEE-ccc----hhHHHHHHHHHHHHH
Q 024671 63 VDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRV---RLHETIENSNVYAVI-SPQ----MGKQVVAFLAAMEIM 128 (264)
Q Consensus 63 IDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~---~~~~l~~~~~~~~v~-s~N----fSlGv~ll~~~~~~a 128 (264)
+..+.++.+.+.++.+.+..+.+|+=|..+-+. .++++ +....|+++ -|. ..+|.+-+.+.++.|
T Consensus 26 ~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~~~i~~~-~~~~~P~Il~IP~~~g~~~~g~~~i~~~v~kA 98 (104)
T PRK01395 26 FPVIDEQEAINTLRKLAMEDYGIIYITEQIAADIPETIERY-DNQVLPAIILIPSNQGSLGIGLSRIQDNVEKA 98 (104)
T ss_pred EEecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhHHHHHHh-cCCCCCEEEEeCCCCCCccccHHHHHHHHHHH
Confidence 345666777777777666677777766554322 23333 222366533 222 223455566665554
No 331
>PLN02740 Alcohol dehydrogenase-like
Probab=34.85 E-value=1.4e+02 Score=27.86 Aligned_cols=35 Identities=6% Similarity=-0.019 Sum_probs=24.8
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhc-CCCeEEecCCC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKV-GVPFVMGTTGG 92 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~-g~plViGTTG~ 92 (264)
.+| ++||++- |+.+...++.+... |.-+++|.++.
T Consensus 268 g~d-vvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~ 304 (381)
T PLN02740 268 GVD-YSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPT 304 (381)
T ss_pred CCC-EEEECCCChHHHHHHHHhhhcCCCEEEEEccCCC
Confidence 578 7999987 56667667666553 77777887653
No 332
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=34.69 E-value=89 Score=28.28 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECC----------ChH-
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYT----------VPA- 69 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS----------~p~- 69 (264)
+|+.+.+.+.+.++++++. .+.. +++...+.+...+. +..|| +||... .|+
T Consensus 12 lG~~l~~~l~~~~~~v~~~-~r~~-------------~dl~d~~~~~~~~~---~~~pd-~Vin~aa~~~~~~ce~~p~~ 73 (286)
T PF04321_consen 12 LGSALARALKERGYEVIAT-SRSD-------------LDLTDPEAVAKLLE---AFKPD-VVINCAAYTNVDACEKNPEE 73 (286)
T ss_dssp HHHHHHHHHTTTSEEEEEE-STTC-------------S-TTSHHHHHHHHH---HH--S-EEEE------HHHHHHSHHH
T ss_pred HHHHHHHHHhhCCCEEEEe-Cchh-------------cCCCCHHHHHHHHH---HhCCC-eEeccceeecHHhhhhChhh
Confidence 3888888888888888764 3221 12211122233333 34689 788885 332
Q ss_pred -------HHHHHHHHHHhcCCCeEEecC
Q 024671 70 -------AVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 70 -------~~~~~~~~~~~~g~plViGTT 90 (264)
++....+.|.+.|+++|-=.|
T Consensus 74 a~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 74 AYAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp HHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred hHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 233456788889998876555
No 333
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=34.60 E-value=56 Score=31.09 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=31.2
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHH
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHE 99 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~ 99 (264)
+|||+.++.+.+..++|.+.|-=.|++ .|.+.+.+++
T Consensus 59 vIDl~~~~~~~~l~~Ac~~~GFF~vvn-HGI~~~l~~~ 95 (358)
T PLN02254 59 VIDLSDPNALTLIGHACETWGVFQVTN-HGIPLSLLDD 95 (358)
T ss_pred eEeCCCHHHHHHHHHHHHHCCEEEEEc-CCCCHHHHHH
Confidence 799999999999999999999999998 5887654433
No 334
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=34.58 E-value=82 Score=28.52 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC---eEEecCCCCHHHHHHH
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDRVRLHET 100 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p---lViGTTG~~~~~~~~l 100 (264)
..|....+.++....|| +|+-+..+......++.+.+.|.. +.+.+.++....+..+
T Consensus 173 ~~d~~~~v~~~~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 232 (333)
T cd06331 173 TSDFGSVIEKIKAAGPD-VVLSTLVGDSNVAFYRQFAAAGLDADRIPILSLTLDENELAAI 232 (333)
T ss_pred cccHHHHHHHHHHcCCC-EEEEecCCCChHHHHHHHHHcCCCcCCCeeEEcccchhhhhcc
Confidence 35666666777777899 456555555556889999998885 5555555554444444
No 335
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=34.56 E-value=2.1e+02 Score=27.22 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=30.2
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChH------HHHHHHHHHHh--cCCCeEEecCCCC
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPA------AVNGNAELYSK--VGVPFVMGTTGGD 93 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~------~~~~~~~~~~~--~g~plViGTTG~~ 93 (264)
.+.+++++.+....+|.|++|+..|. .-.+.++...+ ..+|+|+-| +..
T Consensus 27 ~~~~~al~~l~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt-~~~ 83 (445)
T TIGR02915 27 ADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIVIT-GND 83 (445)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEe-cCC
Confidence 45556666666667898899999884 23444444333 246777655 543
No 336
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.48 E-value=92 Score=23.49 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=28.5
Q ss_pred CCCeEEecCCCCH----HHHHHHHHccCCcEEEccchhHH
Q 024671 82 GVPFVMGTTGGDR----VRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 82 g~plViGTTG~~~----~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
...+||--|++-. ...++.|.+.++|++++.+.|+.
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4589999999843 24566777778999999999997
No 337
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.43 E-value=2.5e+02 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=26.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi 87 (264)
++.+....+|.++|.-..+..+.+.++.+.+.|+|+|.
T Consensus 53 ~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 53 QDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 34344456886566544567677788888899999886
No 338
>PRK08643 acetoin reductase; Validated
Probab=34.40 E-value=2.2e+02 Score=24.44 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcC--CCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|.+++.. ++... .++.....+... .+..+-.|++.|+.+.+.++.+
T Consensus 14 iG~~la~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIV-DYNEE-------------------TAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4888898888888887643 32210 111111111111 1222457999999999988887
Q ss_pred Hhc--CCCeEEecCCCC
Q 024671 79 SKV--GVPFVMGTTGGD 93 (264)
Q Consensus 79 ~~~--g~plViGTTG~~ 93 (264)
.+. ++..||-..|..
T Consensus 74 ~~~~~~id~vi~~ag~~ 90 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVA 90 (256)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 663 578888888863
No 339
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=34.29 E-value=2e+02 Score=25.03 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=41.5
Q ss_pred cCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC-CHHHHHHHHHccCCcEEEccchhHHH
Q 024671 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG-DRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~-~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
+.....+=|=+++|.+....-..+.+++.++++|.=.. +.++. +.+..++.-.+.+|++...+
T Consensus 33 ~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~-~~a~~aGA~fivsp~~~~~v 96 (206)
T PRK09140 33 EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQV-DRLADAGGRLIVTPNTDPEV 96 (206)
T ss_pred HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHH-HHHHHcCCCEEECCCCCHHH
Confidence 34455333445788877766666767887888888555 45555 44445677788889888765
No 340
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=34.29 E-value=1.9e+02 Score=26.84 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=12.7
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+++.+.+.+...++.|.+.+.|+++.+
T Consensus 22 AfN~~n~e~~~avi~AAe~~~sPvIiq~ 49 (285)
T PRK07709 22 QFNMNNLEWTQAILAAAEEEKSPVILGV 49 (285)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEEEEc
Confidence 3444444444444444444444444443
No 341
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=34.17 E-value=1.5e+02 Score=26.38 Aligned_cols=87 Identities=14% Similarity=0.258 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc----CCCCEEEEECCC--------h
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD----KYPNMIVVDYTV--------P 68 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~----~~~d~VvIDFS~--------p 68 (264)
+|+.+++.+.+.|.+++..++...... ...... ..++....+.+..+..... ..+| +||.+.. |
T Consensus 11 iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~d-~Vih~A~~~~~~~~~~ 86 (308)
T PRK11150 11 IGSNIVKALNDKGITDILVVDNLKDGT-KFVNLV--DLDIADYMDKEDFLAQIMAGDDFGDIE-AIFHEGACSSTTEWDG 86 (308)
T ss_pred HHHHHHHHHHhCCCceEEEecCCCcch-HHHhhh--hhhhhhhhhHHHHHHHHhcccccCCcc-EEEECceecCCcCCCh
Confidence 489999999888987776665432100 000000 0111101122222222211 2578 7898741 1
Q ss_pred --------HHHHHHHHHHHhcCCCeEEecCC
Q 024671 69 --------AAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 69 --------~~~~~~~~~~~~~g~plViGTTG 91 (264)
..+...++.|.++++++|.-.|.
T Consensus 87 ~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~ 117 (308)
T PRK11150 87 KYMMDNNYQYSKELLHYCLEREIPFLYASSA 117 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEcch
Confidence 22445778888888887765553
No 342
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=34.15 E-value=1.3e+02 Score=27.80 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=24.2
Q ss_pred CCCCEEEEECCC-hHHHHHHHHHHH-hcCCCeEEecCC
Q 024671 56 KYPNMIVVDYTV-PAAVNGNAELYS-KVGVPFVMGTTG 91 (264)
Q Consensus 56 ~~~d~VvIDFS~-p~~~~~~~~~~~-~~g~plViGTTG 91 (264)
..+| ++||++. +..+...++.+. ..|.-+.+|.+.
T Consensus 252 ~~~d-~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 288 (365)
T cd05279 252 GGVD-YAFEVIGSADTLKQALDATRLGGGTSVVVGVPP 288 (365)
T ss_pred CCCc-EEEECCCCHHHHHHHHHHhccCCCEEEEEecCC
Confidence 3577 7899984 567777777766 666666677654
No 343
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.02 E-value=1.4e+02 Score=27.08 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=6.1
Q ss_pred CCCeEEecCCCC
Q 024671 82 GVPFVMGTTGGD 93 (264)
Q Consensus 82 g~plViGTTG~~ 93 (264)
++|+++|+.+.+
T Consensus 70 ~~~viagv~~~~ 81 (288)
T cd00954 70 KVTLIAHVGSLN 81 (288)
T ss_pred CCeEEeccCCCC
Confidence 345555555444
No 344
>PRK07890 short chain dehydrogenase; Provisional
Probab=33.96 E-value=2e+02 Score=24.62 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc--CCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...++|++++.. ++... +++...+++.. .....+..|++.++.+...++.+
T Consensus 17 IG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLA-ARTAE-------------------RLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred HHHHHHHHHHHcCCEEEEE-eCCHH-------------------HHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHH
Confidence 4888998888888887743 33221 11111111111 12234688999999999888877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..|+-..|.
T Consensus 77 ~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 77 LERFGRVDALVNNAFR 92 (258)
T ss_pred HHHcCCccEEEECCcc
Confidence 553 46788888776
No 345
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=33.72 E-value=2e+02 Score=29.16 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCC---HHHHHH---HHHccCCcEEEccchhHHHHHHHHHHHHHHHhcC--CCC-CCC
Q 024671 69 AAVNGNAELYSKVGVPFVMGTTGGD---RVRLHE---TIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP--GAF-SGY 139 (264)
Q Consensus 69 ~~~~~~~~~~~~~g~plViGTTG~~---~~~~~~---l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~--~~~-~~~ 139 (264)
+.+..+++-..++|+|+|+.-.=|. ++|++. .|+..++++.++.-|+-|-.=-..|++...+... ..| .-|
T Consensus 343 ~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e~~s~fk~LY 422 (524)
T cd00477 343 ANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACEQPSEFKFLY 422 (524)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhcCCCCCcccc
Confidence 3456777788889999999999884 445544 5666678899998899886554555555544442 112 112
Q ss_pred CEE--E--------EeecCCCCCCCcHHHHHHHHHHHhcC
Q 024671 140 SLQ--V--------LESHQAGKLDTSGTAKAVISCFQKLG 169 (264)
Q Consensus 140 die--I--------~E~HH~~K~DaSGTAl~l~~~i~~~~ 169 (264)
+.+ | .|+-+...++.|-.|.+=.+.+++.|
T Consensus 423 ~~~~si~eKIetIAk~IYGA~~V~~S~~A~kqLk~ie~~G 462 (524)
T cd00477 423 DLEDPLEDKIETIAKKIYGADGVELSPKAKKKLARYEKQG 462 (524)
T ss_pred CCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHHcC
Confidence 221 1 12355555555666665444555544
No 346
>PRK07825 short chain dehydrogenase; Provisional
Probab=33.51 E-value=1.9e+02 Score=25.27 Aligned_cols=70 Identities=17% Similarity=0.052 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.++|..++.. ++.. +.+++....+. ....+..|++.|+.+.+.++.+.+
T Consensus 17 iG~~la~~l~~~G~~v~~~-~r~~-------------------~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 17 IGLATARALAALGARVAIG-DLDE-------------------ALAKETAAELG--LVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCH-------------------HHHHHHHHHhc--cceEEEccCCCHHHHHHHHHHHHH
Confidence 3788888777778876543 2211 11111111111 234457899999999998888776
Q ss_pred c--CCCeEEecCCC
Q 024671 81 V--GVPFVMGTTGG 92 (264)
Q Consensus 81 ~--g~plViGTTG~ 92 (264)
. ++.++|-..|.
T Consensus 75 ~~~~id~li~~ag~ 88 (273)
T PRK07825 75 DLGPIDVLVNNAGV 88 (273)
T ss_pred HcCCCCEEEECCCc
Confidence 4 67788887775
No 347
>PRK10481 hypothetical protein; Provisional
Probab=33.50 E-value=2.3e+02 Score=25.34 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhcCCC-eEEecCCCCHHHHHHHHHccCCcEEEccchh
Q 024671 68 PAAVNGNAELYSKVGVP-FVMGTTGGDRVRLHETIENSNVYAVISPQMG 115 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~p-lViGTTG~~~~~~~~l~~~~~~~~v~s~NfS 115 (264)
++.+.+..+.....|.. +|.+-|||+.+..+.+.+.-++|++ .||-.
T Consensus 168 ~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI-~~n~a 215 (224)
T PRK10481 168 EEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVL-LSNVL 215 (224)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEE-cHHHH
Confidence 34555555555556665 6788899987555566666666655 44533
No 348
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.50 E-value=2.1e+02 Score=25.96 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCeEEecCCCCHHHHHHH---HHccC-CcE-EEccchhH
Q 024671 70 AVNGNAELYSKVGVPFVMGTTGGDRVRLHET---IENSN-VYA-VISPQMGK 116 (264)
Q Consensus 70 ~~~~~~~~~~~~g~plViGTTG~~~~~~~~l---~~~~~-~~~-v~s~NfSl 116 (264)
...+.++.|.+.|+.=|+= ..+..++.+.+ +++.+ -++ +++||.+-
T Consensus 105 G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~ 155 (258)
T PRK13111 105 GVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTD 155 (258)
T ss_pred CHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 5566788888888765543 46666655444 33344 233 57888865
No 349
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=33.49 E-value=1.3e+02 Score=31.09 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCeEEecCCCC---HHHHHH---HHH-ccC-CcEEEccchhHHHHHHHHHHHHHHHhcC---CCC-CC
Q 024671 71 VNGNAELYSKVGVPFVMGTTGGD---RVRLHE---TIE-NSN-VYAVISPQMGKQVVAFLAAMEIMAEQFP---GAF-SG 138 (264)
Q Consensus 71 ~~~~~~~~~~~g~plViGTTG~~---~~~~~~---l~~-~~~-~~~v~s~NfSlGv~ll~~~~~~aa~~l~---~~~-~~ 138 (264)
+..+++-+.++|+|+|+.-.=|. ++|++. .|+ ..+ +++++|.-|+-|-.=-..|++.+.+... ..| .-
T Consensus 426 L~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~~~s~fk~L 505 (625)
T PTZ00386 426 LQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTENVPSNFKLL 505 (625)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHhcCCCCCccc
Confidence 45567778889999999999884 445544 455 556 6899999999986655555555544431 112 12
Q ss_pred CCEEE----------EeecCCCCCCCcHHHHHHHHHHHhcC
Q 024671 139 YSLQV----------LESHQAGKLDTSGTAKAVISCFQKLG 169 (264)
Q Consensus 139 ~dieI----------~E~HH~~K~DaSGTAl~l~~~i~~~~ 169 (264)
||.+- .|+-....++.|--|.+=.+.+++.|
T Consensus 506 Yd~~~sI~eKIetIAkeIYGA~gVefS~~AkkqLk~ie~~G 546 (625)
T PTZ00386 506 YPLDASLKEKIETICKEIYGAAGVEYLNDADEKLEDFERMG 546 (625)
T ss_pred CCCCCCHHHHHHHHHHHccCCCcEEECHHHHHHHHHHHHcC
Confidence 44321 23455555555666665444555544
No 350
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.46 E-value=2.4e+02 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHHHhc--CCCeEEecCCCC
Q 024671 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGGD 93 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~plViGTTG~~ 93 (264)
+..|+|.++.+...++.+.+. ++.++|-..|+.
T Consensus 61 ~~~Dl~~~~~v~~~~~~~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 61 LPCDVAEDASIDAMFAELGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred eecCCCCHHHHHHHHHHHHhhcCCCCEEEECCccC
Confidence 568999999999999988763 478999888864
No 351
>PRK08862 short chain dehydrogenase; Provisional
Probab=33.43 E-value=2.4e+02 Score=24.29 Aligned_cols=71 Identities=7% Similarity=0.006 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+++++...++|..++.. .+.. +.+++..+.+.....+ .+..|.+.++.+.+.++..
T Consensus 17 IG~aia~~la~~G~~V~~~-~r~~-------------------~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (227)
T PRK08862 17 LGRTISCHFARLGATLILC-DQDQ-------------------SALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAI 76 (227)
T ss_pred HHHHHHHHHHHCCCEEEEE-cCCH-------------------HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHH
Confidence 4888888888889887743 3221 1222222222111223 1346899999999888887
Q ss_pred Hhc---CCCeEEecCC
Q 024671 79 SKV---GVPFVMGTTG 91 (264)
Q Consensus 79 ~~~---g~plViGTTG 91 (264)
.+. ++.+++-..|
T Consensus 77 ~~~~g~~iD~li~nag 92 (227)
T PRK08862 77 EQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHhCCCCCEEEECCc
Confidence 663 5788888876
No 352
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=33.41 E-value=2.7e+02 Score=22.73 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=26.5
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh--cCCCeEEecC
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTT 90 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~plViGTT 90 (264)
+.++++..+....+|.|++|...|.. -.+.++...+ ...|+|+-|.
T Consensus 32 ~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~ 80 (219)
T PRK10336 32 QGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred CHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence 33344444444568988999887752 2344444444 3467777653
No 353
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=33.36 E-value=72 Score=30.11 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+| +|||-+ +++.-+..-++|.++++|+|.|.
T Consensus 116 ~~D-lVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 116 GVD-LIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred CCC-EEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 468 788886 66666667788899999998744
No 354
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=33.26 E-value=2.3e+02 Score=25.40 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=26.3
Q ss_pred HhhhhcCCCCEEEEECCC-hHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~-p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|. +|=++. +....+.++.+.+.++|+|.-
T Consensus 47 i~~l~~~~vDg-IIi~~~~~~~~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 47 IENLIARGVDV-LVIIPQNGQVLSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred HHHHHHcCCCE-EEEeCCChhHHHHHHHHHHHCCCeEEEe
Confidence 44444567894 555654 455678888999999998764
No 355
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=33.09 E-value=73 Score=24.73 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=22.4
Q ss_pred Hhhhhc-CCCCEEEEECCChHH-------HHHHHHHHHhcCCCeEE
Q 024671 50 LASVFD-KYPNMIVVDYTVPAA-------VNGNAELYSKVGVPFVM 87 (264)
Q Consensus 50 l~~~~~-~~~d~VvIDFS~p~~-------~~~~~~~~~~~g~plVi 87 (264)
.+.+.+ .+.| .||.|..|.. -+..-+.|.++++|++.
T Consensus 60 ~~~i~~~g~id-lVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 60 DAAIAEKGKFD-VVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHhCCCCEE-EEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 344445 5666 6777765544 45566666677777654
No 356
>PLN00016 RNA-binding protein; Provisional
Probab=33.09 E-value=2.9e+02 Score=25.78 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcc--c-cccc----cccCceeEeecCCchhhHHhhhhcCCCCEEEEECCC--hHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEE--S-GQKV----EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV--PAAV 71 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~--~-g~~~----~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~--p~~~ 71 (264)
.|+.+++.+.+.|+++.+..-+.... . .... .+...++.+.. .|+....+.+....+| +||++.. .+.+
T Consensus 68 iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-~D~~d~~~~~~~~~~d-~Vi~~~~~~~~~~ 145 (378)
T PLN00016 68 IGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-GDPADVKSKVAGAGFD-VVYDNNGKDLDEV 145 (378)
T ss_pred EhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-ecHHHHHhhhccCCcc-EEEeCCCCCHHHH
Confidence 48999998888899988654322110 0 0000 00011222211 1332211111123588 7899864 4557
Q ss_pred HHHHHHHHhcCCC-eE
Q 024671 72 NGNAELYSKVGVP-FV 86 (264)
Q Consensus 72 ~~~~~~~~~~g~p-lV 86 (264)
...++.|.+.|+. +|
T Consensus 146 ~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 146 EPVADWAKSPGLKQFL 161 (378)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 7888999889985 44
No 357
>CHL00148 orf27 Ycf27; Reviewed
Probab=33.00 E-value=2.9e+02 Score=22.98 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=28.6
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh-cCCCeEEecCCCCH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK-VGVPFVMGTTGGDR 94 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~-~g~plViGTTG~~~ 94 (264)
.+..+++..+....+|.+++|...|.. -.+.++...+ ..+|+|+-|.-.+.
T Consensus 37 ~~~~~~l~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~ 89 (240)
T CHL00148 37 SDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIMLTALGDV 89 (240)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCH
Confidence 345555555555568988999887742 2333333322 45777776543333
No 358
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.00 E-value=1.9e+02 Score=24.78 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=25.0
Q ss_pred hhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 51 ASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
..+....+|.++|-=..++...+.++.+.+.++|+|.-
T Consensus 50 ~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 50 EDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEe
Confidence 33334568855564334555667788888999998763
No 359
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=32.96 E-value=73 Score=30.19 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+| +|||-+ +++.-.-.-+.|.++++|+|.|-
T Consensus 118 ~~D-vVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 118 DAD-VILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 578 899998 45555556678999999999753
No 360
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=32.91 E-value=2e+02 Score=26.15 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=43.7
Q ss_pred EECCChHHHHHHHHHHHhcCCCe---EEecCCCCHHHHHHHHHccCCcEEE--ccchhHHHH
Q 024671 63 VDYTVPAAVNGNAELYSKVGVPF---VMGTTGGDRVRLHETIENSNVYAVI--SPQMGKQVV 119 (264)
Q Consensus 63 IDFS~p~~~~~~~~~~~~~g~pl---ViGTTG~~~~~~~~l~~~~~~~~v~--s~NfSlGv~ 119 (264)
=|-....++++.+=+|+..|+++ ++-|||=-..++-.-+..+++|++. |+-.|+++.
T Consensus 176 EDIGRHNAvDKviG~all~g~~~~~~~l~~SGR~s~emv~Ka~~aGipvivS~saPT~lAVe 237 (263)
T PRK00724 176 EDVGRHNALDKLIGAALRAGIPLRDGALLVSGRASSEMVQKAAMAGIPILVAVSAPTSLAVE 237 (263)
T ss_pred ecCchhHHHHHHHHHHHHcCCCccCcEEEEeCCchHHHHHHHHHcCCcEEEEcccchHHHHH
Confidence 38899999999999999999874 7889996444444444457899987 556888873
No 361
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=32.88 E-value=2.3e+02 Score=26.98 Aligned_cols=41 Identities=7% Similarity=-0.033 Sum_probs=33.2
Q ss_pred hhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCH
Q 024671 53 VFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDR 94 (264)
Q Consensus 53 ~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~ 94 (264)
+....+| |||=|+.++.+...++.+.+.|.. ..|||-||..
T Consensus 230 ik~~~a~-vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w~~ 271 (403)
T cd06361 230 IEENKVN-VIVVFARQFHVFLLFNKAIERNINKVWIASDNWST 271 (403)
T ss_pred HhcCCCe-EEEEEeChHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 3446788 677799999999999999988864 6789999964
No 362
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=32.74 E-value=1.8e+02 Score=26.92 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=10.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhc
Q 024671 111 SPQMGKQVVAFLAAMEIMAEQF 132 (264)
Q Consensus 111 s~NfSlGv~ll~~~~~~aa~~l 132 (264)
.|.+++-=|+ +..++++++.
T Consensus 108 gS~lp~eeNi--~~T~~vv~~A 127 (288)
T TIGR00167 108 GSHEPFEENI--ELTKKVVERA 127 (288)
T ss_pred CCCCCHHHHH--HHHHHHHHHH
Confidence 5556666555 3444444443
No 363
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.72 E-value=2.3e+02 Score=24.15 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc--CCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...++|.+++.. ++.+. .++.....+.. ..+..+..|++.++.+...++.+
T Consensus 16 iG~~la~~l~~~g~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIA-DLNDE-------------------AAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4788888888788887753 32211 11111111111 12223577999999998888877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++.+||-..|.
T Consensus 76 ~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 76 VETFGGVDILVNNAGI 91 (258)
T ss_pred HHHcCCCCEEEECCCC
Confidence 654 67889988875
No 364
>PRK07109 short chain dehydrogenase; Provisional
Probab=32.71 E-value=2.1e+02 Score=26.33 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=44.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|.+++.. ++... .+++..+++.....+ .+..|++.++.+...++.+
T Consensus 20 IG~~la~~la~~G~~Vvl~-~R~~~-------------------~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 20 VGRATARAFARRGAKVVLL-ARGEE-------------------GLEALAAEIRAAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCHH-------------------HHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4788888888788887643 32211 111112222111222 3567999999999988877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++.++|-..|.
T Consensus 80 ~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 80 EEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHCCCCCEEEECCCc
Confidence 653 57888877774
No 365
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=32.64 E-value=71 Score=31.51 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=41.2
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcC
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP 133 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~ 133 (264)
|+.+||. .+..+.++.+-+...++|++-.... .--+.+.+.-++|.+..+ | +|+.-..++++.+++.++
T Consensus 236 v~~~~sg-~~t~~~i~~~~~A~lniv~~~~~~~-~~A~~Le~~fGiP~~~~~-~-~Gi~~T~~~Lr~ia~~~g 304 (466)
T TIGR01282 236 VVAQWSG-DGTLNEMENAPKAKLNLIHCYRSMN-YISRHMEEKYGIPWMEYN-F-FGPTKIAESLRKIAEFFD 304 (466)
T ss_pred EEEEECC-CCCHHHHHhcccCCEEEEEChHHHH-HHHHHHHHHhCCceEeCC-C-CCHHHHHHHHHHHHHHHC
Confidence 4555552 3445555555555556666543221 111235556678887764 5 888888888888888875
No 366
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.58 E-value=91 Score=28.33 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=30.3
Q ss_pred HhhhhcCCCC-EEEEECCChHHHHHHHHHHHhcCCCeEE-ecCCCCHHHHHHHHHccC
Q 024671 50 LASVFDKYPN-MIVVDYTVPAAVNGNAELYSKVGVPFVM-GTTGGDRVRLHETIENSN 105 (264)
Q Consensus 50 l~~~~~~~~d-~VvIDFS~p~~~~~~~~~~~~~g~plVi-GTTG~~~~~~~~l~~~~~ 105 (264)
++.+.+...| +++.|.. ++-..+.++.|.++|+.+|. .|.--+++.++.+++.+.
T Consensus 110 ~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~ 166 (258)
T PRK13111 110 AADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHAS 166 (258)
T ss_pred HHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 3444444555 3444554 35666777777777776666 333334455666655543
No 367
>PRK14851 hypothetical protein; Provisional
Probab=32.56 E-value=77 Score=32.99 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=24.3
Q ss_pred CCCEEEEECCCh---HHHHHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYTVP---AAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS~p---~~~~~~~~~~~~~g~plViGT 89 (264)
.+| +|||-+.. +.-....+.|.++++|+|.++
T Consensus 133 ~~D-vVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 133 GVD-VVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred CCC-EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 578 78998863 333456678999999999876
No 368
>PRK08589 short chain dehydrogenase; Validated
Probab=32.43 E-value=3e+02 Score=24.12 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=44.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcC--CCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...+.|..++.. ++.. .+++...++... ....+..|++.++.+...++.+
T Consensus 18 IG~aia~~l~~~G~~vi~~-~r~~--------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAV-DIAE--------------------AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCcH--------------------HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH
Confidence 4788888887778887753 2211 111112222111 2234679999999999998888
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++.++|-..|.
T Consensus 77 ~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 77 KEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHcCCcCEEEECCCC
Confidence 763 46788877775
No 369
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=32.39 E-value=69 Score=31.10 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCh-HHHHHHHHHHHh-cCCCeEEecCCCCHHHHHHHHHccC--CcEEEccc
Q 024671 66 TVP-AAVNGNAELYSK-VGVPFVMGTTGGDRVRLHETIENSN--VYAVISPQ 113 (264)
Q Consensus 66 S~p-~~~~~~~~~~~~-~g~plViGTTG~~~~~~~~l~~~~~--~~~v~s~N 113 (264)
+.| +...+.++...+ .++|+|++++ +.+-+++..+..+ .|++++.|
T Consensus 80 ~DPae~fa~~vk~V~~a~~~PLIL~~~--D~evl~aale~~~~~kpLL~aAt 129 (386)
T PF03599_consen 80 GDPAEEFAKAVKKVAEAVDVPLILCGC--DPEVLKAALEACAGKKPLLYAAT 129 (386)
T ss_dssp GSTHHHHHHHHHHHHHC-SSEEEEESS--HHHHHHHHHHHTTTS--EEEEEB
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEeC--CHHHHHHHHHHhCcCCcEEeEcC
No 370
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.38 E-value=2e+02 Score=25.23 Aligned_cols=37 Identities=16% Similarity=0.446 Sum_probs=24.6
Q ss_pred HhhhhcCCCCEEEEECCC-hHHHHHHHHHHHhcCCCeEE
Q 024671 50 LASVFDKYPNMIVVDYTV-PAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~-p~~~~~~~~~~~~~g~plVi 87 (264)
+..+....+|.++| ++. ++...+.++.+.+.|+|+|.
T Consensus 49 l~~~~~~~~dgiii-~~~~~~~~~~~i~~~~~~~iPvV~ 86 (294)
T cd06316 49 IETTISQKPDIIIS-IPVDPVSTAAAYKKVAEAGIKLVF 86 (294)
T ss_pred HHHHHHhCCCEEEE-cCCCchhhhHHHHHHHHcCCcEEE
Confidence 33434457895444 553 34457788889999999876
No 371
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=32.37 E-value=2.6e+02 Score=25.13 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=41.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCC----------hH-
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV----------PA- 69 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~----------p~- 69 (264)
.|+.+++.+.+.| ++++ ++...... ..++...+.++++++ ...|| +||.+.. |+
T Consensus 12 iGs~l~~~L~~~g-~V~~-~~~~~~~~---------~~Dl~d~~~~~~~~~---~~~~D-~Vih~Aa~~~~~~~~~~~~~ 76 (299)
T PRK09987 12 VGWELQRALAPLG-NLIA-LDVHSTDY---------CGDFSNPEGVAETVR---KIRPD-VIVNAAAHTAVDKAESEPEF 76 (299)
T ss_pred HHHHHHHHhhccC-CEEE-eccccccc---------cCCCCCHHHHHHHHH---hcCCC-EEEECCccCCcchhhcCHHH
Confidence 3888998887777 5543 44321110 011211112222222 23588 7887642 32
Q ss_pred -------HHHHHHHHHHhcCCCeEEecC
Q 024671 70 -------AVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 70 -------~~~~~~~~~~~~g~plViGTT 90 (264)
++...++.|.+.|+++|.-+|
T Consensus 77 ~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 77 AQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 245677888889999887776
No 372
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.29 E-value=4.5e+02 Score=25.04 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=62.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccc-cccCceeEeecCCchhhHHhhhhcCCCCEEEE----ECCChHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVV----DYTVPAAVNGNA 75 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~-~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvI----DFS~p~~~~~~~ 75 (264)
+|..+++.+.+.|.++++. +.......... .+...++.+....+....++ ..+|.||+ .+++|. +
T Consensus 16 ~G~s~a~~l~~~G~~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~----~~~d~vV~s~gi~~~~~~-----~ 85 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLD----EDFDLMVKNPGIPYTNPM-----V 85 (447)
T ss_pred HHHHHHHHHHHCCCEEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhc----CcCCEEEECCCCCCCCHH-----H
Confidence 4788888878899988753 53221100010 11122344432222222221 12673332 555553 4
Q ss_pred HHHHhcCCCe--------------EEecCCCC-----HHHHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcCCCC
Q 024671 76 ELYSKVGVPF--------------VMGTTGGD-----RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAF 136 (264)
Q Consensus 76 ~~~~~~g~pl--------------ViGTTG~~-----~~~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~ 136 (264)
+.|.+.|+|+ +||-||=. .+-+..+-+..+..+....| +|..+.. +. ...
T Consensus 86 ~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~-~~----~~~---- 154 (447)
T PRK02472 86 EKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE-VA----QKA---- 154 (447)
T ss_pred HHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-HH----hcC----
Confidence 4555555554 47777753 23455555555655577777 4544322 11 111
Q ss_pred CCCCEEEEeecC
Q 024671 137 SGYSLQVLESHQ 148 (264)
Q Consensus 137 ~~~dieI~E~HH 148 (264)
...|+-|+|.=+
T Consensus 155 ~~~~~~V~E~ss 166 (447)
T PRK02472 155 TADDTLVMELSS 166 (447)
T ss_pred CCCCEEEEEcCc
Confidence 245788888843
No 373
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=32.27 E-value=1.8e+02 Score=25.25 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=36.2
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHhc---CCCeEEecCCCCHHHHHHHHHccCC-cEEEccchhH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSKV---GVPFVMGTTGGDRVRLHETIENSNV-YAVISPQMGK 116 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~~---g~plViGTTG~~~~~~~~l~~~~~~-~~v~s~NfSl 116 (264)
+.++++..+....+|.|++|...|.. -.+.++...+. +.|.|+-.|+........-+...+. ..+.-| |+.
T Consensus 36 ~~~eal~~l~~~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP-~~~ 111 (262)
T TIGR02875 36 NGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKP-FDL 111 (262)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECC-CCH
Confidence 44455555555678988999988752 12333333332 2244555567655443332233443 344444 444
No 374
>PRK07411 hypothetical protein; Validated
Probab=32.27 E-value=72 Score=30.67 Aligned_cols=35 Identities=20% Similarity=-0.029 Sum_probs=25.6
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhcCCCeEEe-cCCC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMG-TTGG 92 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~plViG-TTG~ 92 (264)
.+| +|||-+. ++.-.-.-+.|.+.++|+|.| +.||
T Consensus 128 ~~D-~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 128 PYD-VVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 578 8999985 444455557889999999986 3444
No 375
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=32.26 E-value=89 Score=29.70 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=20.8
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+. ++.-...-++|.++++|+|.|.+
T Consensus 225 ~~D-~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 225 DVD-VVVDGADNFPTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 466 6777764 44444455667777777777644
No 376
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=32.23 E-value=1.1e+02 Score=30.91 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCC---c-EEEccc
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNV---Y-AVISPQ 113 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~---~-~v~s~N 113 (264)
..+.+.++| |....+......+.+.|..+|||= +.++.++.+...... + ++++-|
T Consensus 253 ~~~~l~~~D-t~~~~~~~~~~~a~~~ga~~ViGP--L~k~~V~~l~~~~~~~~~~vp~LaLN 311 (536)
T PF04348_consen 253 SRPELRFYD-TNADSADALYQQAVADGADFVIGP--LLKSNVEALAQLPQLQAQPVPVLALN 311 (536)
T ss_dssp --S-EEEEE-TTTS-HHHHHHHHHHTT--EEE-----SHHHHHHHHH-GG-GGTT-EEEES-
T ss_pred CCCceEEec-CCCCCHHHHHHHHHHcCCCEEEcC--CCHHHHHHHHhcCcccccCCceeecc
Confidence 345667899 888888899999999999999987 888899888776543 3 355554
No 377
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=32.18 E-value=3.3e+02 Score=23.40 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=25.1
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
++.+....+|.++|.=..++...+.++.+.+.++|+|.--
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 50 AENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred HHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 4444445688545532233445667888889999988653
No 378
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.15 E-value=3.9e+02 Score=24.28 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=36.7
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC-CeEEecCCCC-HHH-HHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV-PFVMGTTGGD-RVR-LHET 100 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~-plViGTTG~~-~~~-~~~l 100 (264)
.|....+.++....+| +|+=+..+......++.+.+.|. +.++++.++. ... +..+
T Consensus 186 ~d~~~~v~~i~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (362)
T cd06343 186 PDFDSQVAKLKAAGAD-VVVLATTPKFAAQAIRKAAELGWKPTFLLSSVSASVASVLKPA 244 (362)
T ss_pred ccHHHHHHHHHhcCCC-EEEEEcCcHHHHHHHHHHHHcCCCceEEEEecccccHHHHHHh
Confidence 3555556666677899 45556677678889999999885 4455555553 333 4444
No 379
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=32.13 E-value=89 Score=26.97 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=20.7
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC-CC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT-GG 92 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT-G~ 92 (264)
.+| ++||-+ .++.....-++|.++++|+|.+-+ ||
T Consensus 110 ~~d-vVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~ 146 (197)
T cd01492 110 QFD-VVVATELSRAELVKINELCRKLGVKFYATGVHGL 146 (197)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 456 566654 445555566667777777665443 44
No 380
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=32.12 E-value=87 Score=29.96 Aligned_cols=33 Identities=27% Similarity=0.213 Sum_probs=25.5
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+ ++++-.-.-++|.++++|+|.|.+
T Consensus 131 ~~D-lVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 131 GVD-LVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 588 799987 456555666789999999998754
No 381
>PRK06114 short chain dehydrogenase; Provisional
Probab=32.11 E-value=3.3e+02 Score=23.42 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcC--CCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|.+++.. ++..+ ..+++..+.+... ....+..|++.++.+.+.++.+
T Consensus 20 IG~~ia~~l~~~G~~v~~~-~r~~~------------------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 20 IGQRIAIGLAQAGADVALF-DLRTD------------------DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCcc------------------hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4888898888888887743 32210 0111111222111 2233567999999999988887
Q ss_pred Hh--cCCCeEEecCCC
Q 024671 79 SK--VGVPFVMGTTGG 92 (264)
Q Consensus 79 ~~--~g~plViGTTG~ 92 (264)
.+ -++..||-..|.
T Consensus 81 ~~~~g~id~li~~ag~ 96 (254)
T PRK06114 81 EAELGALTLAVNAAGI 96 (254)
T ss_pred HHHcCCCCEEEECCCC
Confidence 66 357788888886
No 382
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=32.10 E-value=1.6e+02 Score=25.44 Aligned_cols=15 Identities=7% Similarity=0.260 Sum_probs=8.1
Q ss_pred HHHHHHHhcCCCeEE
Q 024671 73 GNAELYSKVGVPFVM 87 (264)
Q Consensus 73 ~~~~~~~~~g~plVi 87 (264)
+.++.|.+.|..+|+
T Consensus 79 ~~v~~a~~aGad~I~ 93 (221)
T PRK01130 79 KEVDALAAAGADIIA 93 (221)
T ss_pred HHHHHHHHcCCCEEE
Confidence 345566666665443
No 383
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=31.96 E-value=1.8e+02 Score=25.27 Aligned_cols=39 Identities=5% Similarity=-0.163 Sum_probs=25.9
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.++|--+.++...+.++.+.+.|+|+|.-
T Consensus 47 i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 47 IDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEe
Confidence 344444578855553333455677788999999999854
No 384
>PRK07063 short chain dehydrogenase; Provisional
Probab=31.85 E-value=1.9e+02 Score=24.92 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc----CCCCEEEEECCChHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD----KYPNMIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~----~~~d~VvIDFS~p~~~~~~~~ 76 (264)
+|+.+++...+.|..++.. ++... .+++....+.. .....+..|++.++.+...++
T Consensus 19 IG~~~a~~l~~~G~~vv~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 19 IGAAIARAFAREGAAVALA-DLDAA-------------------LAERAAAAIARDVAGARVLAVPADVTDAASVAAAVA 78 (260)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHH
Confidence 4888888888888887643 32211 11111122111 112235679999999999888
Q ss_pred HHHhc--CCCeEEecCCC
Q 024671 77 LYSKV--GVPFVMGTTGG 92 (264)
Q Consensus 77 ~~~~~--g~plViGTTG~ 92 (264)
.+.+. ++..+|-..|.
T Consensus 79 ~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 79 AAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHhCCCcEEEECCCc
Confidence 87664 57788888885
No 385
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=31.80 E-value=1.9e+02 Score=27.61 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=34.4
Q ss_pred hHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCC
Q 024671 48 SVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 48 ~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
+.|....+...-+-.+.+.+.+.+...++.|.+.+.|+++.++-.
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~ 50 (345)
T cd00946 6 KLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNG 50 (345)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 334444444444568899999999999999999999999988543
No 386
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=31.74 E-value=3.8e+02 Score=25.46 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE--------------------ecCCCC-----HHHHHHH
Q 024671 46 RESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM--------------------GTTGGD-----RVRLHET 100 (264)
Q Consensus 46 l~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi--------------------GTTG~~-----~~~~~~l 100 (264)
......++....+| |+|=-++|.+ ..+..+.+. +|+|+ .-||++ .++++.+
T Consensus 77 a~~iarql~~~~~d-viv~i~tp~A--q~~~s~~~~-iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~li 152 (322)
T COG2984 77 AAQIARQLVGDKPD-VIVAIATPAA--QALVSATKT-IPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELI 152 (322)
T ss_pred HHHHHHHhhcCCCc-EEEecCCHHH--HHHHHhcCC-CCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHH
Q ss_pred HHc---cC-CcEEEccchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEee
Q 024671 101 IEN---SN-VYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLES 146 (264)
Q Consensus 101 ~~~---~~-~~~v~s~NfSlGv~ll~~~~~~aa~~l~~~~~~~dieI~E~ 146 (264)
.+. .+ ++++|+|+.---+-++-.+-+.|-+. -++++|.
T Consensus 153 k~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~--------Gl~vve~ 194 (322)
T COG2984 153 KALLPNAKSIGVLYNPGEANSVSLVEELKKEARKA--------GLEVVEA 194 (322)
T ss_pred HHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHC--------CCEEEEE
No 387
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=31.66 E-value=1.5e+02 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecCC
Q 024671 58 PNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 58 ~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTTG 91 (264)
+| ++||.+- |+.+...++.+...|.=+.+|.++
T Consensus 236 ~D-~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~ 269 (343)
T PRK09880 236 FD-VSFEVSGHPSSINTCLEVTRAKGVMVQVGMGG 269 (343)
T ss_pred CC-EEEECCCCHHHHHHHHHHhhcCCEEEEEccCC
Confidence 67 7888886 355666776666667666677643
No 388
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=31.50 E-value=3.4e+02 Score=24.60 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV 83 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~ 83 (264)
..|....+..+....|| +|+-...+......++.+.+.|.
T Consensus 173 ~~d~~~~v~~l~~~~pd-~v~~~~~~~~~~~~~~~~~~~G~ 212 (334)
T cd06356 173 VSDFGSTIQKIQAAKPD-FVMSILVGANHLSFYRQWAAAGL 212 (334)
T ss_pred chhHHHHHHHHHhcCCC-EEEEeccCCcHHHHHHHHHHcCC
Confidence 34666667777777899 45544444456678888888887
No 389
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=31.37 E-value=1.4e+02 Score=27.81 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=42.6
Q ss_pred eeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHH
Q 024671 37 EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE 102 (264)
Q Consensus 37 ~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~ 102 (264)
+|++.+.++++++++ ..+|.|..|==.|+.+.+.++.+..++-.++-.+=|.+.+.+..+++
T Consensus 192 EVEvesle~~~eAl~----agaDiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~ 253 (280)
T COG0157 192 EVEVESLEEAEEALE----AGADIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAE 253 (280)
T ss_pred EEEcCCHHHHHHHHH----cCCCEEEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhh
Confidence 456655555555543 47897888988899999999887555555666666678777666654
No 390
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=31.28 E-value=3.2e+02 Score=23.23 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=38.1
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh--cCCCeEEecCCCCH-HHHHHHHHccCCcEEEccchhHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~plViGTTG~~~-~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
+.++++..+....||+|++|...|.. -.+.++...+ ...|+|+-| +... +...... .++.--++.-+++.-
T Consensus 38 ~~~~al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivls-~~~~~~~~~~al-~~Ga~~yl~Kp~~~~ 112 (225)
T PRK10046 38 NLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTT-AASDMETVSEAV-RCGVFDYLIKPIAYE 112 (225)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEE-cCCCHHHHHHHH-HcCccEEEECCcCHH
Confidence 34445555555679988999998853 3344444444 245666654 5543 3333322 234333444555543
No 391
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=31.15 E-value=1.6e+02 Score=27.32 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCcccc--c-cccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESG--Q-KVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g--~-~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
+|+.+++.++..|.++++. +..+.... + ..+.. .-+.....++..+.+........| +++|++....+...++.
T Consensus 171 vG~~aiqlAk~~G~~Vi~~-~~~~~k~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvD-~v~d~vG~~~~~~~~~~ 247 (348)
T PLN03154 171 VGQLVGQLAKLHGCYVVGS-AGSSQKVDLLKNKLGFD-EAFNYKEEPDLDAALKRYFPEGID-IYFDNVGGDMLDAALLN 247 (348)
T ss_pred HHHHHHHHHHHcCCEEEEE-cCCHHHHHHHHHhcCCC-EEEECCCcccHHHHHHHHCCCCcE-EEEECCCHHHHHHHHHH
Confidence 4778888887788876653 32211100 0 11110 011111112344434333223467 78898887777777776
Q ss_pred HHhcCCCeEEecC
Q 024671 78 YSKVGVPFVMGTT 90 (264)
Q Consensus 78 ~~~~g~plViGTT 90 (264)
....|.=+++|..
T Consensus 248 l~~~G~iv~~G~~ 260 (348)
T PLN03154 248 MKIHGRIAVCGMV 260 (348)
T ss_pred hccCCEEEEECcc
Confidence 6666766667653
No 392
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=31.09 E-value=1.9e+02 Score=26.29 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCc-cccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCCh-HHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEE-ESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~-~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p-~~~~~~~~~~ 78 (264)
+|+.+++.+...|..++... +..+ ..-+..+.. .-+... ..++.+.+........| +++|++.. +...+.++.+
T Consensus 167 vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~-~v~~~~-~~~~~~~l~~~~~~~~d-~vl~~~g~~~~~~~~~~~l 242 (339)
T cd08249 167 VGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGAD-AVFDYH-DPDVVEDIRAATGGKLR-YALDCISTPESAQLCAEAL 242 (339)
T ss_pred HHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCC-EEEECC-CchHHHHHHHhcCCCee-EEEEeeccchHHHHHHHHH
Confidence 46777777777888877644 2211 000111110 001111 12233333333334467 78998764 7777777777
Q ss_pred Hh--cCCCeEEecCC
Q 024671 79 SK--VGVPFVMGTTG 91 (264)
Q Consensus 79 ~~--~g~plViGTTG 91 (264)
.. .|.=+.+|.+.
T Consensus 243 ~~~~~g~~v~~g~~~ 257 (339)
T cd08249 243 GRSGGGKLVSLLPVP 257 (339)
T ss_pred hccCCCEEEEecCCC
Confidence 66 66666666554
No 393
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=31.00 E-value=1e+02 Score=26.94 Aligned_cols=31 Identities=19% Similarity=0.040 Sum_probs=20.8
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhc-CCCeEEe
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKV-GVPFVMG 88 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~-g~plViG 88 (264)
.+| +|||-+ +++.-....+.|.++ ++|+|.|
T Consensus 117 ~~D-vVI~a~D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 117 DCD-IVVEAFDNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 467 677764 555555666777777 8888775
No 394
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.94 E-value=2e+02 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHc
Q 024671 71 VNGNAELYSKVGVPFVMGTTGGDRVRLHETIEN 103 (264)
Q Consensus 71 ~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~ 103 (264)
+.+.++.+.+.++++|+--.+++....+.+++.
T Consensus 215 l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~ 247 (287)
T cd01137 215 VATLIEQVKKEKVPAVFVESTVNDRLMKQVAKE 247 (287)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHH
Confidence 333333333344444443333333333333333
No 395
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=30.92 E-value=2e+02 Score=22.21 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=42.1
Q ss_pred ChHHHHHHHHh-CCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHH---
Q 024671 1 MGKAVIKAADA-AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE--- 76 (264)
Q Consensus 1 MG~~i~~~~~~-~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~--- 76 (264)
+|+.+++.+.+ +++++++.+.+. ...++.+......+.-....+.+ ...+....+| +++--+.++...+.++
T Consensus 11 ~g~~~~~~l~~~~~~~l~av~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D-vV~~~~~~~~~~~~~~~~~ 86 (122)
T smart00859 11 VGQELLRLLAEHPDFEVVALAASA-RSAGKRVSEAGPHLKGEVVLELE--PEDFEELAVD-IVFLALPHGVSKEIAPLLP 86 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEEech-hhcCcCHHHHCcccccccccccc--cCChhhcCCC-EEEEcCCcHHHHHHHHHHH
Confidence 46777777774 799999875532 22333321111101000000110 0111112567 6777677777777543
Q ss_pred HHHhcCCCeEEecCCCC
Q 024671 77 LYSKVGVPFVMGTTGGD 93 (264)
Q Consensus 77 ~~~~~g~plViGTTG~~ 93 (264)
.+.+.|+-+|--++=+.
T Consensus 87 ~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 87 KAAEAGVKVIDLSSAFR 103 (122)
T ss_pred hhhcCCCEEEECCcccc
Confidence 33456765554443343
No 396
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=30.91 E-value=2.9e+02 Score=26.74 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=43.3
Q ss_pred hHHHHHHHH-h--CCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEEC--CChHHHHHHHH
Q 024671 2 GKAVIKAAD-A--AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDY--TVPAAVNGNAE 76 (264)
Q Consensus 2 G~~i~~~~~-~--~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDF--S~p~~~~~~~~ 76 (264)
|+.+++.+. + .+++++|.++..+...|..+ .++++.+.+++.+.+. +...|.|+|-- ..++...+.++
T Consensus 137 ~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i----~g~pVlg~~~l~~~i~---~~~id~ViIAip~~~~~~~~~ll~ 209 (456)
T TIGR03022 137 AAILYRALQSNPQLGLRPLAVVDTDPAASGRLL----TGLPVVGADDALRLYA---RTRYAYVIVAMPGTQAEDMARLVR 209 (456)
T ss_pred HHHHHHHHhhCccCCcEEEEEEeCCcccccccc----CCCcccChhHHHHHHH---hCCCCEEEEecCCccHHHHHHHHH
Confidence 456666665 2 37899998875332222221 2456654444443332 24566445433 35677888899
Q ss_pred HHHhcCC
Q 024671 77 LYSKVGV 83 (264)
Q Consensus 77 ~~~~~g~ 83 (264)
.|.+.++
T Consensus 210 ~l~~~~v 216 (456)
T TIGR03022 210 KLGALHF 216 (456)
T ss_pred HHHhCCC
Confidence 9988888
No 397
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=30.85 E-value=2.1e+02 Score=24.85 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.+.|.+++.. ++.. +.++.....+ ......+..|.+.++.+...++.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~-~r~~-------------------~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 18 IGRALVERFLAEGARVAVL-ERSA-------------------EKLASLRQRF-GDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 4888888888788887643 3221 0111111111 11223356799999999888887766
Q ss_pred c--CCCeEEecCCCC
Q 024671 81 V--GVPFVMGTTGGD 93 (264)
Q Consensus 81 ~--g~plViGTTG~~ 93 (264)
. ++.+++-..|..
T Consensus 77 ~~g~id~li~~ag~~ 91 (263)
T PRK06200 77 AFGKLDCFVGNAGIW 91 (263)
T ss_pred hcCCCCEEEECCCCc
Confidence 4 577999888863
No 398
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.84 E-value=1.6e+02 Score=30.26 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=53.8
Q ss_pred hHHHHHHHH-hCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 2 G~~i~~~~~-~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
|..+++... .+.+..|+.+|+.+...|..+ .|++|.++.+.++.++.. ..+ .+.|=.-.++...+.++.|
T Consensus 128 g~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i----~Gv~V~g~~~i~~~v~~~---~~~~iiiAips~~~~~~~~i~~~l 200 (588)
T COG1086 128 GDLLLRALRRDPEYTPVAFLDDDPDLTGMKI----RGVPVLGRIEIERVVEEL---GIQLILIAIPSASQEERRRILLRL 200 (588)
T ss_pred HHHHHHHHHhCCCcceEEEECCChhhcCCEE----eceeeechhHHHHHHHHc---CCceEEEecCCCCHHHHHHHHHHH
Confidence 677888886 566999999886554444432 258888877766665543 344 3455566778889999999
Q ss_pred HhcCCCeE
Q 024671 79 SKVGVPFV 86 (264)
Q Consensus 79 ~~~g~plV 86 (264)
.++|+++=
T Consensus 201 ~~~~~~v~ 208 (588)
T COG1086 201 ARTGIAVR 208 (588)
T ss_pred HhcCCcEE
Confidence 99986543
No 399
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=30.76 E-value=4.4e+02 Score=24.40 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=33.9
Q ss_pred cCCCCEEEEECCChHHHHHHHHHHHhcCCCeEE-----ecCC-CCHHHHHHHHHccCCcEEEccchhHHH
Q 024671 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM-----GTTG-GDRVRLHETIENSNVYAVISPQMGKQV 118 (264)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plVi-----GTTG-~~~~~~~~l~~~~~~~~v~s~NfSlGv 118 (264)
+..+|.|.|.... ...+.-+++.+.++|+++ |+|+ ++.+++. + .++..+.-||..+-.
T Consensus 172 ~AGAD~vfi~g~~--~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~---~-lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 172 EAGADMIFPEALT--SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELR---E-AGYKMVIYPVTAFRA 235 (285)
T ss_pred HcCCCEEEeCCCC--CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHH---H-cCCcEEEEchHHHHH
Confidence 3568977887643 344555666666788843 4444 3455543 3 366666666665543
No 400
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=30.72 E-value=3.6e+02 Score=24.81 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=33.8
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC----eEEecCCCCHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP----FVMGTTGGDRVRLHET 100 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p----lViGTTG~~~~~~~~l 100 (264)
.|....+..+....|| +|+=..........++.|.+.|.. .++|++ .....+..+
T Consensus 176 ~D~s~~v~~l~~~~pD-av~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~ 234 (359)
T TIGR03407 176 TDFQTIINKIKAFKPD-VVFNTLNGDSNVAFFKQLKNAGITAKDVPVVSFS-VAEEEIRGI 234 (359)
T ss_pred HhHHHHHHHHHHhCCC-EEEEeccCCCHHHHHHHHHHcCCCccCCcEEEee-cCHHHHhhc
Confidence 4666666777777899 454333444456778899999874 256665 334444444
No 401
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=30.71 E-value=1.1e+02 Score=27.97 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=18.6
Q ss_pred hcCCCeEEecCCCC--HHHHHHHHHccCCcEEEc
Q 024671 80 KVGVPFVMGTTGGD--RVRLHETIENSNVYAVIS 111 (264)
Q Consensus 80 ~~g~plViGTTG~~--~~~~~~l~~~~~~~~v~s 111 (264)
..+..+||-+++-- ...+.+.|...++|++.+
T Consensus 119 ~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 119 SAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34567777777641 124555566666777655
No 402
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=30.66 E-value=2.7e+02 Score=26.99 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=35.4
Q ss_pred chhhHHhhhhcCCCCE-EEEECCChHHHHHHHHHHHhcCCC---eEEecCCCCH
Q 024671 45 DRESVLASVFDKYPNM-IVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDR 94 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~-VvIDFS~p~~~~~~~~~~~~~g~p---lViGTTG~~~ 94 (264)
|....+..+....+|. |||=|..+..+...++.+.+.|.. +.|||.||..
T Consensus 231 d~~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~~~~~ 284 (472)
T cd06374 231 SFDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVGGEFQLIGSDGWAD 284 (472)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEechHHHHHHHHHHHHhcCCCceEEEEeccccc
Confidence 5555666665545662 345467777788888999888875 6789999964
No 403
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=30.50 E-value=2.2e+02 Score=26.74 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=13.7
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
.+.+.+.+.+...++.|.+.+.|+++.+
T Consensus 21 AfN~~n~e~~~avi~AAe~~~sPvIlq~ 48 (307)
T PRK05835 21 AFNFVNFEMLNAIFEAGNEENSPLFIQA 48 (307)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEEEEc
Confidence 4444444445555555555555555444
No 404
>PRK07814 short chain dehydrogenase; Provisional
Probab=30.49 E-value=2.8e+02 Score=24.10 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=44.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcC--CCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...++|.+++.. ++..+ .+++....+... ....+-+|++.++.+...++.+
T Consensus 22 IG~~~a~~l~~~G~~Vi~~-~r~~~-------------------~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIA-ARTES-------------------QLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4788888887778887753 32211 111111111111 1222458999999999988888
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..|+-..|.
T Consensus 82 ~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 82 VEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHcCCCCEEEECCCC
Confidence 764 67889887774
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=30.48 E-value=88 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.6
Q ss_pred CCCEEEEECCChHHH-HHHHHHHHhcCCCeEEec
Q 024671 57 YPNMIVVDYTVPAAV-NGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~-~~~~~~~~~~g~plViGT 89 (264)
.+| +|||-+....+ .-.-++|.++++|+|.|.
T Consensus 116 ~~D-lVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 116 EVD-LIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred CCC-EEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 578 78888754444 444467888999998763
No 406
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=30.48 E-value=3.6e+02 Score=23.72 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCCCEEEEECCChHH-HHHHHHHHHhcCCCeEEecCCCCHH-HHHHHHHc
Q 024671 56 KYPNMIVVDYTVPAA-VNGNAELYSKVGVPFVMGTTGGDRV-RLHETIEN 103 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~-~~~~~~~~~~~g~plViGTTG~~~~-~~~~l~~~ 103 (264)
..||+|++|--.|.- ..+.+..|.++-.+.++-=|+++.. -+++..++
T Consensus 49 ~~pDvVildie~p~rd~~e~~~~~~~~~~~piv~lt~~s~p~~i~~a~~~ 98 (194)
T COG3707 49 LQPDVVILDIEMPRRDIIEALLLASENVARPIVALTAYSDPALIEAAIEA 98 (194)
T ss_pred cCCCEEEEecCCCCccHHHHHHHhhcCCCCCEEEEEccCChHHHHHHHHc
Confidence 479988999988843 5777777877666666777788754 45544443
No 407
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=30.47 E-value=1.4e+02 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=15.2
Q ss_pred CCEEEEEC-CChHHHHHHHHHHHhcCCCeEE
Q 024671 58 PNMIVVDY-TVPAAVNGNAELYSKVGVPFVM 87 (264)
Q Consensus 58 ~d~VvIDF-S~p~~~~~~~~~~~~~g~plVi 87 (264)
+| +|||- -++++-....++|.++++|+|.
T Consensus 103 ~D-~VvdaiD~~~~k~~L~~~c~~~~ip~I~ 132 (231)
T cd00755 103 PD-FVVDAIDSIRAKVALIAYCRKRKIPVIS 132 (231)
T ss_pred CC-EEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 45 45554 2444445555555555666554
No 408
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=30.44 E-value=2.9e+02 Score=23.92 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=56.3
Q ss_pred ChHHHHHHHHhCC---Ce-EEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHH
Q 024671 1 MGKAVIKAADAAG---LE-LVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~~~~---~e-Lv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (264)
||+.+++.+.+.+ .+ ++ ..++......+.+. ...++.+. .+.+++++ .+| +||=-+-|....+.++
T Consensus 15 mg~ala~~l~~~~~~~~~~i~-~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~-----~~D-iViiavp~~~~~~v~~ 84 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEII-VSNRSNVEKLDQLQ-ARYNVSTT--TDWKQHVT-----SVD-TIVLAMPPSAHEELLA 84 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEE-EECCCCHHHHHHHH-HHcCcEEe--CChHHHHh-----cCC-EEEEecCHHHHHHHHH
Confidence 7888888776433 33 33 23332111011110 01123332 35554443 578 6777777777777777
Q ss_pred HHHh--cCCCeEEecCCCCHHHHHHHHHccCCcE-EEccchhHH
Q 024671 77 LYSK--VGVPFVMGTTGGDRVRLHETIENSNVYA-VISPQMGKQ 117 (264)
Q Consensus 77 ~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~-v~s~NfSlG 117 (264)
.... .+..+|.-+-|++.+.++..... +.++ ..=||+..-
T Consensus 85 ~l~~~~~~~~vis~~~gi~~~~l~~~~~~-~~~v~r~~Pn~a~~ 127 (245)
T PRK07634 85 ELSPLLSNQLVVTVAAGIGPSYLEERLPK-GTPVAWIMPNTAAE 127 (245)
T ss_pred HHHhhccCCEEEEECCCCCHHHHHHHcCC-CCeEEEECCcHHHH
Confidence 6543 24567788888988877765422 1233 344776543
No 409
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=30.34 E-value=2.3e+02 Score=28.92 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCCeEEecCC
Q 024671 70 AVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 70 ~~~~~~~~~~~~g~plViGTTG 91 (264)
.+...++.|.+.|+++|+-+|+
T Consensus 461 gt~~l~~a~~~~g~~~v~~Ss~ 482 (668)
T PLN02260 461 GTLTLADVCRENGLLMMNFATG 482 (668)
T ss_pred HHHHHHHHHHHcCCeEEEEccc
Confidence 4556788888888888877665
No 410
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=30.33 E-value=2.2e+02 Score=27.13 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=55.8
Q ss_pred hHHHHHHHH-hCCCe---EEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCCh-HHHHHHHH
Q 024671 2 GKAVIKAAD-AAGLE---LVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AAVNGNAE 76 (264)
Q Consensus 2 G~~i~~~~~-~~~~e---Lv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p-~~~~~~~~ 76 (264)
|+++++.+. +++++ |.... +....|+.+...+..+.+... +.+ .+ ...| + +=|+.| +...+...
T Consensus 18 G~ell~lL~~h~~f~v~~l~~~a--S~~saGk~~~~~~~~l~v~~~-~~~----~~--~~~D-i-vf~a~~~~~s~~~~~ 86 (347)
T PRK06728 18 GQKIIELLEKETKFNIAEVTLLS--SKRSAGKTVQFKGREIIIQEA-KIN----SF--EGVD-I-AFFSAGGEVSRQFVN 86 (347)
T ss_pred HHHHHHHHHHCCCCCcccEEEEE--CcccCCCCeeeCCcceEEEeC-CHH----Hh--cCCC-E-EEECCChHHHHHHHH
Confidence 899999998 79998 44322 223456665444434555432 211 11 2467 3 335444 56677777
Q ss_pred HHHhcCCCeEEecC-------------CCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 77 LYSKVGVPFVMGTT-------------GGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 77 ~~~~~g~plViGTT-------------G~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
.+.+.|+++|-=+. .++.+++ ... ..++-.||=+.-
T Consensus 87 ~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i---~~~--~~iIanPnC~tt 135 (347)
T PRK06728 87 QAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTL---KEH--KGIIAVPNCSAL 135 (347)
T ss_pred HHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHH---hcc--CCEEECCCCHHH
Confidence 77788876664333 3333333 222 357889995553
No 411
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=30.07 E-value=2e+02 Score=25.52 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=28.9
Q ss_pred hhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCHHHH
Q 024671 47 ESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVRL 97 (264)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~~~~ 97 (264)
...+.++....|| +||=.+.+......++.+.+.|+. .++|+.|+....+
T Consensus 178 ~~~~~~l~~~~pd-aIi~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~~~~~ 228 (312)
T cd06333 178 TAQLLKIRAARPD-AVLIWGSGTPAALPAKNLRERGYKGPIYQTHGVASPDF 228 (312)
T ss_pred HHHHHHHHhCCCC-EEEEecCCcHHHHHHHHHHHcCCCCCEEeecCcCcHHH
Confidence 3333444344678 566666555555677777777654 3666666654443
No 412
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=30.03 E-value=3.5e+02 Score=23.77 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCc--ccccccc-----c-cCceeEeecC-C--chhhHHhhhhcCCCCEEEEECCChH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEE--ESGQKVE-----V-CGKEIQVHGL-S--DRESVLASVFDKYPNMIVVDYTVPA 69 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~--~~g~~~~-----~-~~~~i~i~~~-~--dl~~~l~~~~~~~~d~VvIDFS~p~ 69 (264)
.|+.+++.+.+.|..+|++.|.... +.|.|+. . ...++..+.. + +.++ +...++| |+|..+...
T Consensus 34 VG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~D-VlipaA~~~ 108 (217)
T cd05211 34 VGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEA----ILGLDVD-IFAPCALGN 108 (217)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccc----ceecccc-EEeeccccC
Confidence 3788898888889999998884331 0133320 0 0001111110 0 1111 2223678 789888665
Q ss_pred HHHHHHHHHHhcCCCeEEecCC--CCHHHHHHHHHccCCcEEEccchhH
Q 024671 70 AVNGNAELYSKVGVPFVMGTTG--GDRVRLHETIENSNVYAVISPQMGK 116 (264)
Q Consensus 70 ~~~~~~~~~~~~g~plViGTTG--~~~~~~~~l~~~~~~~~v~s~NfSl 116 (264)
.+ +-+-+.+.+.++|++-.- ++++..+.|.+ ..+++.|-+-.
T Consensus 109 ~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~---~Gi~v~Pd~~~ 152 (217)
T cd05211 109 VI--DLENAKKLKAKVVAEGANNPTTDEALRILHE---RGIVVAPDIVA 152 (217)
T ss_pred cc--ChhhHhhcCccEEEeCCCCCCCHHHHHHHHH---CCcEEEChHHh
Confidence 43 333455678999985443 34544444443 34777776654
No 413
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.84 E-value=3.6e+02 Score=23.10 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=36.9
Q ss_pred hHHhhhhcCCCCEEEEECCCh---HHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHccCCcE-EEccchhHHH
Q 024671 48 SVLASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV----GVPFVMGTTGGDRVRLHETIENSNVYA-VISPQMGKQV 118 (264)
Q Consensus 48 ~~l~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~----g~plViGTTG~~~~~~~~l~~~~~~~~-v~s~NfSlGv 118 (264)
+..+.+.+..||.|.+=++.+ ..+.+.++.+.+. ++++++|=..++++ +++ .++. .|++|-.-++
T Consensus 124 ~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~----~~~--~~GaD~~~~da~~av 196 (201)
T cd02070 124 EFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE----FAD--EIGADGYAEDAAEAV 196 (201)
T ss_pred HHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH----HHH--HcCCcEEECCHHHHH
Confidence 334444456788656666433 4455556666555 35778887777763 222 2344 6777766555
No 414
>PF13941 MutL: MutL protein
Probab=29.81 E-value=2.7e+02 Score=27.64 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=31.3
Q ss_pred HhhhhcCCCCEEE----EECCChHHHHHHHHHHHhcC--CCeEEecCCCCHHHHHHHHHccCCcEEEccc
Q 024671 50 LASVFDKYPNMIV----VDYTVPAAVNGNAELYSKVG--VPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 50 l~~~~~~~~d~Vv----IDFS~p~~~~~~~~~~~~~g--~plViGTTG~~~~~~~~l~~~~~~~~v~s~N 113 (264)
++.+...+||.|+ .|.-..+.+..|.+...+.+ +|+|..=-=--.++++++-+.++.++++.+|
T Consensus 117 l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~N 186 (457)
T PF13941_consen 117 LEEIREIRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITEN 186 (457)
T ss_pred HHHHhccCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 3444445666322 25666666666666655543 3433321111123455554445566666666
No 415
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=29.65 E-value=1.4e+02 Score=28.33 Aligned_cols=84 Identities=17% Similarity=0.079 Sum_probs=47.0
Q ss_pred hHHHHHHHHhCCCeEEEEEcCCCc--cccccccccCceeEeecC--CchhhHHhhhhc-CCCCEEEEECCCh--------
Q 024671 2 GKAVIKAADAAGLELVPVSFGTEE--ESGQKVEVCGKEIQVHGL--SDRESVLASVFD-KYPNMIVVDYTVP-------- 68 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~~~~--~~g~~~~~~~~~i~i~~~--~dl~~~l~~~~~-~~~d~VvIDFS~p-------- 68 (264)
|..+++.+...|..++.+++..+. ..-+..+. . .+... .++.+.+..+.. ..+| ++||++-.
T Consensus 198 G~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga---~-~v~~~~~~~~~~~v~~~~~~~g~D-vvid~~G~~~~~~~~~ 272 (393)
T TIGR02819 198 GLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC---E-TVDLSKDATLPEQIEQILGEPEVD-CAVDCVGFEARGHGHD 272 (393)
T ss_pred HHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC---e-EEecCCcccHHHHHHHHcCCCCCc-EEEECCCCcccccccc
Confidence 677777777778775544443221 11111111 1 12211 133333333222 2468 79999974
Q ss_pred -------HHHHHHHHHHHhcCCCeEEecC
Q 024671 69 -------AAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 69 -------~~~~~~~~~~~~~g~plViGTT 90 (264)
.++...++.+...|.-+++|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 273 GKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred ccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 3788888888888888888885
No 416
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=29.64 E-value=2.3e+02 Score=29.08 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCCeEEecCCCC---HHHHHH---HHHccCCcEEEccchhHHHHHHHHHHHHHHHhcC--CCC-CCCCE
Q 024671 71 VNGNAELYSKVGVPFVMGTTGGD---RVRLHE---TIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP--GAF-SGYSL 141 (264)
Q Consensus 71 ~~~~~~~~~~~g~plViGTTG~~---~~~~~~---l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~--~~~-~~~di 141 (264)
+..+++-..++|+|+|+.-.=|. ++|++. +++..++++.+|.-|+-|-.=-..|++.+.+... ..| .-||.
T Consensus 390 L~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e~~s~fk~LYd~ 469 (587)
T PRK13507 390 LLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACNEPNDFKFLYPL 469 (587)
T ss_pred HHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhhCcCCCcccCCC
Confidence 55677778889999999998884 445544 4555668888899999986544555555544332 112 12443
Q ss_pred EE----------EeecCCCCCCCcHHHHHHHHHHHhc
Q 024671 142 QV----------LESHQAGKLDTSGTAKAVISCFQKL 168 (264)
Q Consensus 142 eI----------~E~HH~~K~DaSGTAl~l~~~i~~~ 168 (264)
+. .|+-+...++.|-.|.+=.+.+++.
T Consensus 470 ~~sI~EKIetIAkeIYGAdgVe~S~~A~kqLk~le~~ 506 (587)
T PRK13507 470 EMPLRERIETIAREVYGADGVSYTPEAEAKLKRLESD 506 (587)
T ss_pred CCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHhc
Confidence 32 2456666665566676655555554
No 417
>PRK07074 short chain dehydrogenase; Provisional
Probab=29.62 E-value=3.2e+02 Score=23.43 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
.|+.+++...+.|.+++.. ++.+. .++.....+.......+-.|++.++.+...+..+.+
T Consensus 14 iG~~la~~L~~~g~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 14 IGQALARRFLAAGDRVLAL-DIDAA-------------------ALAAFADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3788888877778887653 32211 111111111111234457899999998888877655
Q ss_pred c--CCCeEEecCCCC
Q 024671 81 V--GVPFVMGTTGGD 93 (264)
Q Consensus 81 ~--g~plViGTTG~~ 93 (264)
. ++..|+-..|..
T Consensus 74 ~~~~~d~vi~~ag~~ 88 (257)
T PRK07074 74 ERGPVDVLVANAGAA 88 (257)
T ss_pred HcCCCCEEEECCCCC
Confidence 3 578888888864
No 418
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=29.57 E-value=2.6e+02 Score=25.53 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=33.3
Q ss_pred EECCCh---HHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcE-EEccchhH
Q 024671 63 VDYTVP---AAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYA-VISPQMGK 116 (264)
Q Consensus 63 IDFS~p---~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~-v~s~NfSl 116 (264)
-+|.+| +++...++.|.++|+++ |+...+.++.+.+.+. +... +++.-.++
T Consensus 188 ~~~~~pev~~ai~~v~~a~~~~Gk~~--G~~~~~~~~a~~~~~~-G~~~v~~g~D~~~ 242 (267)
T PRK10128 188 DNAGHPEVQRIIETSIRRIRAAGKAA--GFLAVDPDMAQKCLAW-GANFVAVGVDTML 242 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeE--EEcCCCHHHHHHHHHc-CCcEEEEChHHHH
Confidence 356677 67788888999999986 6555667766666553 4444 44444443
No 419
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.54 E-value=2.4e+02 Score=25.23 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=4.8
Q ss_pred CCcE-EEccchh
Q 024671 105 NVYA-VISPQMG 115 (264)
Q Consensus 105 ~~~~-v~s~NfS 115 (264)
++++ ++.|+++
T Consensus 206 ~v~~if~e~~~~ 217 (264)
T cd01020 206 QIDALIVNPQQA 217 (264)
T ss_pred CCCEEEeCCCCC
Confidence 3443 3455544
No 420
>PRK07677 short chain dehydrogenase; Provisional
Probab=29.54 E-value=3.2e+02 Score=23.42 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=43.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++...++|..++.. ++... .+++..+.+.....+ .+-.|.|.++.+...+..+
T Consensus 13 iG~~ia~~l~~~G~~Vi~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVIT-GRTKE-------------------KLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4888998888888887653 32210 111111111111112 2446999999999988887
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..||-..|.
T Consensus 73 ~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 73 DEKFGRIDALINNAAG 88 (252)
T ss_pred HHHhCCccEEEECCCC
Confidence 653 57788877764
No 421
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=29.44 E-value=1.9e+02 Score=22.41 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCEEEEECCCh---HHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEE
Q 024671 58 PNMIVVDYTVP---AAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVI 110 (264)
Q Consensus 58 ~d~VvIDFS~p---~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~ 110 (264)
.| ++|=||.. ..+.+.++.|.++|+++|.=| +.+ ++..++...+.+++.
T Consensus 44 ~d-l~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT-~~~--~l~~~~~~~~~~~~~ 95 (119)
T cd05017 44 KT-LVIAVSYSGNTEETLSAVEQAKERGAKIVAIT-SGG--KLLEMAREHGVPVII 95 (119)
T ss_pred CC-EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe-CCc--hHHHHHHHcCCcEEE
Confidence 45 56666643 557888889999998776544 544 477777766666655
No 422
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.30 E-value=1.8e+02 Score=19.96 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=19.2
Q ss_pred CCCC-EEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 56 KYPN-MIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 56 ~~~d-~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
...+ +.+-|-.+.....+..+.+.+.|++++.|.
T Consensus 27 ~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 27 LGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred cCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 3444 334555555555666666666666666653
No 423
>PRK05876 short chain dehydrogenase; Provisional
Probab=29.25 E-value=2.6e+02 Score=24.78 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=44.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|..++.. +... +.+++..+.+.....+ .+..|++.++.+.+.++.+
T Consensus 18 IG~ala~~La~~G~~Vv~~-~r~~-------------------~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 18 IGLATGTEFARRGARVVLG-DVDK-------------------PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4788888888788887643 2211 1122222222111222 2467999999999988877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++.+||=..|.
T Consensus 78 ~~~~g~id~li~nAg~ 93 (275)
T PRK05876 78 FRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHcCCCCEEEECCCc
Confidence 653 47788887775
No 424
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=29.24 E-value=1.3e+02 Score=27.35 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=32.5
Q ss_pred CCCEEEEECCChH-HHHHHHHHHHhcCCCeEEecCCCC--HHHHHHHHHccCCcEE
Q 024671 57 YPNMIVVDYTVPA-AVNGNAELYSKVGVPFVMGTTGGD--RVRLHETIENSNVYAV 109 (264)
Q Consensus 57 ~~d~VvIDFS~p~-~~~~~~~~~~~~g~plViGTTG~~--~~~~~~l~~~~~~~~v 109 (264)
+||+|+.+=+.|+ ......+.+.+..+=+||||+.-- ..++-..+...+.|++
T Consensus 180 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi 235 (260)
T cd01409 180 KPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIA 235 (260)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEE
Confidence 5785454445666 455556666667899999999752 2344444444556654
No 425
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=29.21 E-value=2e+02 Score=21.22 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=37.1
Q ss_pred EEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCH-------HHHHHHHHccCCcEEEcc
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDR-------VRLHETIENSNVYAVISP 112 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~-------~~~~~l~~~~~~~~v~s~ 112 (264)
..+-..........++++.+.+.. +|+|+++.+. .--+.+...+..|+++.|
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 81 IEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred eEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 455555667788889999998887 6789998432 235567777788887643
No 426
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=29.21 E-value=1.9e+02 Score=26.09 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=32.3
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--C-eEEecCCCCH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--P-FVMGTTGGDR 94 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--p-lViGTTG~~~ 94 (264)
.|....+.++....+|. +|=+..+......++.+.+.|. . .+++++++..
T Consensus 182 ~d~~~~v~~i~~~~~d~-ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (346)
T cd06330 182 PDYGSEITALLAAKPDA-IFSSLWGGDLVTFVRQANARGLFDGTTVVLTLTGAP 234 (346)
T ss_pred cccHHHHHHHHhcCCCE-EEEecccccHHHHHHHHHhcCcccCceEEeeccchh
Confidence 45555666666678994 5545455666788888888876 2 4555665544
No 427
>TIGR03586 PseI pseudaminic acid synthase.
Probab=29.11 E-value=3.2e+02 Score=25.84 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=5.7
Q ss_pred EEeecCCCC
Q 024671 143 VLESHQAGK 151 (264)
Q Consensus 143 I~E~HH~~K 151 (264)
|+|.|-.--
T Consensus 218 iIEkH~tld 226 (327)
T TIGR03586 218 VIEKHFTLD 226 (327)
T ss_pred EEEeCCChh
Confidence 777776543
No 428
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=29.09 E-value=92 Score=24.52 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=30.1
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCeEEecCCCCH
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR 94 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~ 94 (264)
+++--++.+.+.+.+++|.++++|+.+-..|.+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~ 36 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSW 36 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTS
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Confidence 5778888999999999999999999998888764
No 429
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=29.06 E-value=1.2e+02 Score=26.65 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccC-CcEEEccc
Q 024671 67 VPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQ 113 (264)
Q Consensus 67 ~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~-~~~v~s~N 113 (264)
.++.+.+.++.+.+.|+++++.| |-+...+..+.+.-+ ...+++.|
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaT-GR~~~~~~~~~~~l~~~~~~I~~N 67 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLAT-GRPLPDVLSILEELGLDGPLITFN 67 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEC-CCChHHHHHHHHHcCCCccEEEeC
Confidence 47788999999999999999976 766555555544434 33566666
No 430
>PRK11173 two-component response regulator; Provisional
Probab=29.02 E-value=3.1e+02 Score=23.08 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=29.6
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh-cCCCeEEecCCCCHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK-VGVPFVMGTTGGDRV 95 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~-~g~plViGTTG~~~~ 95 (264)
.+..+++..+....+|.|++|...|.. -.+.++...+ ...|+|+-|.-.+.+
T Consensus 34 ~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt~~~~~~ 87 (237)
T PRK11173 34 TDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEV 87 (237)
T ss_pred CCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEECCCCHH
Confidence 344445555555568988999988753 2333333333 367777766444433
No 431
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=29.01 E-value=2.3e+02 Score=26.83 Aligned_cols=86 Identities=23% Similarity=0.186 Sum_probs=50.3
Q ss_pred ChHHHHHHHH-h--CCCeEEEEEcCCC-----------cccc----------c-cccccCc-eeEeecCCchhhHHhhhh
Q 024671 1 MGKAVIKAAD-A--AGLELVPVSFGTE-----------EESG----------Q-KVEVCGK-EIQVHGLSDRESVLASVF 54 (264)
Q Consensus 1 MG~~i~~~~~-~--~~~eLv~~~~~~~-----------~~~g----------~-~~~~~~~-~i~i~~~~dl~~~l~~~~ 54 (264)
+||.+.+++. . .++++|++-+..+ ..-| . .+.+.+. .+.+....++++. ...
T Consensus 10 IGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~dp~~~--~w~ 87 (327)
T TIGR01534 10 IGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERDPSDL--PWK 87 (327)
T ss_pred HHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCCcccC--chh
Confidence 4899999876 4 3799997654111 0001 1 0122333 4555432233221 122
Q ss_pred cCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEec
Q 024671 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (264)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGT 89 (264)
+...| ++++.|-.....+.....++.|...|+=|
T Consensus 88 ~~gvD-iVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 88 ALGVD-IVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred hcCCC-EEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 23578 78998888888888888888887766655
No 432
>PRK06196 oxidoreductase; Provisional
Probab=28.96 E-value=2.5e+02 Score=25.34 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=43.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.+.|++++.. .+.. +.+++...++. ....+..|++.++.+...++.+.+
T Consensus 38 IG~~~a~~L~~~G~~Vv~~-~R~~-------------------~~~~~~~~~l~--~v~~~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVP-ARRP-------------------DVAREALAGID--GVEVVMLDLADLESVRAFAERFLD 95 (315)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHhh--hCeEEEccCCCHHHHHHHHHHHHh
Confidence 4777777777777776643 2221 11112222221 133357899999999998888766
Q ss_pred --cCCCeEEecCCC
Q 024671 81 --VGVPFVMGTTGG 92 (264)
Q Consensus 81 --~g~plViGTTG~ 92 (264)
.++.+||-..|.
T Consensus 96 ~~~~iD~li~nAg~ 109 (315)
T PRK06196 96 SGRRIDILINNAGV 109 (315)
T ss_pred cCCCCCEEEECCCC
Confidence 467888888775
No 433
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=28.95 E-value=65 Score=30.40 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=31.4
Q ss_pred EEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHH
Q 024671 62 VVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHE 99 (264)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~ 99 (264)
+||++.++...+..++|.+.|.=.|++. |.+.+.+++
T Consensus 29 vIDls~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~ 65 (335)
T PLN02156 29 VIDLTDSDAKTQIVKACEEFGFFKVINH-GVRPDLLTQ 65 (335)
T ss_pred cccCCChHHHHHHHHHHHHCCEEEEECC-CCCHHHHHH
Confidence 7999998888899999999999999986 888764444
No 434
>PRK15456 universal stress protein UspG; Provisional
Probab=28.94 E-value=2.3e+02 Score=22.19 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=30.9
Q ss_pred EEEECCChHHHHHHHHHHHhcCCC-eEEecCCCCHHH------HHHHHHccCCcEEE
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVR------LHETIENSNVYAVI 110 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~p-lViGTTG~~~~~------~~~l~~~~~~~~v~ 110 (264)
..+....| ....++++.+.+.. +|+||.|-+... -+.+...++.|+++
T Consensus 86 ~~v~~G~~--~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 86 QHVRFGSV--RDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLV 140 (142)
T ss_pred EEEcCCCh--HHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEE
Confidence 45555554 45577788888887 678999965321 23456667777754
No 435
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=28.90 E-value=1.7e+02 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=20.6
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| ++||++ .+..+...++.....|.=+.+|..
T Consensus 187 g~d-~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 187 GVD-VALEFSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCC-EEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence 356 677777 455566666666566666666653
No 436
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=28.86 E-value=1.6e+02 Score=26.10 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=44.4
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCc-cccccccccCceeEeecCCchhhHHhhhh-cCCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEE-ESGQKVEVCGKEIQVHGLSDRESVLASVF-DKYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~-~~g~~~~~~~~~i~i~~~~dl~~~l~~~~-~~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.++..|..++....+..+ ..-+..+.. .-+.... .+....+.... ....| +++|++........++.+
T Consensus 151 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~d-~vl~~~g~~~~~~~~~~l 227 (323)
T cd05282 151 VGRMLIQLAKLLGFKTINVVRRDEQVEELKALGAD-EVIDSSP-EDLAQRVKEATGGAGAR-LALDAVGGESATRLARSL 227 (323)
T ss_pred HHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCC-EEecccc-hhHHHHHHHHhcCCCce-EEEECCCCHHHHHHHHhh
Confidence 3677777777788887654332211 000111110 0011110 11212222221 23467 789998877777777655
Q ss_pred HhcCCCeEEecCCCC
Q 024671 79 SKVGVPFVMGTTGGD 93 (264)
Q Consensus 79 ~~~g~plViGTTG~~ 93 (264)
...|.=+.+|++...
T Consensus 228 ~~~g~~v~~g~~~~~ 242 (323)
T cd05282 228 RPGGTLVNYGLLSGE 242 (323)
T ss_pred CCCCEEEEEccCCCC
Confidence 555665557777553
No 437
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=28.85 E-value=1.9e+02 Score=26.78 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=20.6
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhc-CCCeEEecCC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKV-GVPFVMGTTG 91 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~-g~plViGTTG 91 (264)
.+| ++||++- +..+...++.+... |.-+.+|.++
T Consensus 257 ~~d-~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~ 292 (369)
T cd08301 257 GVD-YSFECTGNIDAMISAFECVHDGWGVTVLLGVPH 292 (369)
T ss_pred CCC-EEEECCCChHHHHHHHHHhhcCCCEEEEECcCC
Confidence 467 6888873 55556666555443 5556667654
No 438
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.83 E-value=81 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCeEEecCCCCHHHHHH
Q 024671 72 NGNAELYSKVGVPFVMGTTGGDRVRLHE 99 (264)
Q Consensus 72 ~~~~~~~~~~g~plViGTTG~~~~~~~~ 99 (264)
...++++.+.|+|+++.|=+-+.++++.
T Consensus 103 ~~lL~~~A~tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 103 LPLLEYIAKTGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp HHHHHHHHTT-S-EEEE-TT--HHHHHH
T ss_pred HHHHHHHHHhCCcEEEECCCCCHHHHHH
Confidence 5688999999999998876666666655
No 439
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.81 E-value=3.8e+02 Score=24.15 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=26.9
Q ss_pred EEECCCh---HHHHHHHHHHHhcCCCeEEecCCCCHHHHHH---HHHccC-C-cEEEccchhH
Q 024671 62 VVDYTVP---AAVNGNAELYSKVGVPFVMGTTGGDRVRLHE---TIENSN-V-YAVISPQMGK 116 (264)
Q Consensus 62 vIDFS~p---~~~~~~~~~~~~~g~plViGTTG~~~~~~~~---l~~~~~-~-~~v~s~NfSl 116 (264)
+.=+.+| -...+.++.|.+.|+.-|+=- -+..++..+ .+++.+ - .++++|+.+.
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip-Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~ 153 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA-DLPLEESGDLVEAAKKHGVKPIFLVAPNADD 153 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC-CCChHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 4444555 133556777777777654422 222233322 233334 2 2367888776
No 440
>PRK12937 short chain dehydrogenase; Provisional
Probab=28.75 E-value=2.7e+02 Score=23.51 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc--CCCCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (264)
.|+.+++.+.+.|..++....+..+ ..++..+.+.. .....+-+|++.++.+.+.++.+
T Consensus 17 iG~~la~~l~~~g~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (245)
T PRK12937 17 IGAAIARRLAADGFAVAVNYAGSAA-------------------AADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAA 77 (245)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3788888888888887643221110 01111111111 11233567999999999988877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++.+|+-..|.
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 78 ETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 653 57788888775
No 441
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.74 E-value=3e+02 Score=24.03 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+++++...++|..++.. .+.... .+.+++..+++.....-.+..|.+.++.+...++.+.+
T Consensus 21 IG~aia~~la~~G~~v~~~-~r~~~~----------------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 21 IAWGIARSLHNAGAKLVFT-YAGERL----------------EKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred HHHHHHHHHHHCCCEEEEe-cCcccc----------------hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 5888998888888887643 221100 01222222221111122346799999999999988876
Q ss_pred c--CCCeEEecCCC
Q 024671 81 V--GVPFVMGTTGG 92 (264)
Q Consensus 81 ~--g~plViGTTG~ 92 (264)
. ++.+++-..|+
T Consensus 84 ~~g~ld~lv~nag~ 97 (257)
T PRK08594 84 EVGVIHGVAHCIAF 97 (257)
T ss_pred hCCCccEEEECccc
Confidence 2 47788866665
No 442
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=28.66 E-value=3.1e+02 Score=23.32 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCC--CCEEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (264)
.|+.+++.+.+.|.+++.. .+.. ..+++....+.... ...+..|++.++.+.+.+..+
T Consensus 12 iG~~la~~l~~~G~~v~~~-~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 12 IGKGIAERLAKDGFAVAVA-DLNE-------------------ETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3788888887888887643 2211 01111112211111 223467999999999988877
Q ss_pred Hhc--CCCeEEecCCCC
Q 024671 79 SKV--GVPFVMGTTGGD 93 (264)
Q Consensus 79 ~~~--g~plViGTTG~~ 93 (264)
.+. ++..|+-..|..
T Consensus 72 ~~~~~~id~vi~~ag~~ 88 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGVA 88 (254)
T ss_pred HHHcCCCCEEEECCCcC
Confidence 653 578888888864
No 443
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=28.61 E-value=1.1e+02 Score=29.53 Aligned_cols=49 Identities=6% Similarity=0.146 Sum_probs=36.1
Q ss_pred chhhHHhhhhc-CCCCEEEEECCChHHHHHHHHHHHhcCCC---eEEecCCCCH
Q 024671 45 DRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDR 94 (264)
Q Consensus 45 dl~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~~~g~p---lViGTTG~~~ 94 (264)
|....+.++.. ..+| |||=|+.++.+...++.+.+.|.. +.+||.||..
T Consensus 218 d~~~~l~~ik~~~~~~-vIvl~~~~~~~~~ll~~a~~~~~~g~~~wig~d~~~~ 270 (463)
T cd06376 218 EFDKIIKRLLETPNAR-AVIIFANEDDIRRVLEAAKRANQVGHFLWVGSDSWGA 270 (463)
T ss_pred HHHHHHHHHhccCCCe-EEEEecChHHHHHHHHHHHhcCCcCceEEEEeccccc
Confidence 45556666643 4788 667777888888999999887764 5689999954
No 444
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.60 E-value=3.2e+02 Score=22.10 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=45.2
Q ss_pred hHHhhhhcCCCCEEEE---ECCChHHHHHHHHHHHhcC---CCeEEecCC-CCHHHHHHHHHccCCcEEEccchhHHHHH
Q 024671 48 SVLASVFDKYPNMIVV---DYTVPAAVNGNAELYSKVG---VPFVMGTTG-GDRVRLHETIENSNVYAVISPQMGKQVVA 120 (264)
Q Consensus 48 ~~l~~~~~~~~d~VvI---DFS~p~~~~~~~~~~~~~g---~plViGTTG-~~~~~~~~l~~~~~~~~v~s~NfSlGv~l 120 (264)
+..+...+..+|.|+| +-++.+.+.+.++.+.+.+ +++++| | ...++.+.+.+ .++--++.|...+.- .
T Consensus 44 ~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG--G~~~~~~~~~l~~-~Gvd~~~~~gt~~~~-i 119 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG--GVIPPQDFDELKE-MGVAEIFGPGTPIPE-S 119 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe--CCCChHhHHHHHH-CCCCEEECCCCCHHH-H
Confidence 3344444567885444 3356677888888887765 345554 3 33445555544 567778888877764 3
Q ss_pred HHHHHHHH
Q 024671 121 FLAAMEIM 128 (264)
Q Consensus 121 l~~~~~~a 128 (264)
+..+.+..
T Consensus 120 ~~~l~~~~ 127 (132)
T TIGR00640 120 AIFLLKKL 127 (132)
T ss_pred HHHHHHHH
Confidence 33344433
No 445
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.53 E-value=3.6e+02 Score=22.76 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=24.6
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
+..+....+|.++|..+.+.. ..++.+.+.|+|+|.=
T Consensus 47 i~~~~~~~vdgiii~~~~~~~--~~~~~~~~~~ipvV~~ 83 (266)
T cd06278 47 LRQLLQYRVDGVIVTSGTLSS--ELAEECRRNGIPVVLI 83 (266)
T ss_pred HHHHHHcCCCEEEEecCCCCH--HHHHHHhhcCCCEEEE
Confidence 344444578867777665543 3477888899998764
No 446
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.46 E-value=2.7e+02 Score=21.30 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=26.3
Q ss_pred hhhhcCCCCEEEEECCCh---HHHHHHHHHHHhc---CCCeEEecCCCCH
Q 024671 51 ASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV---GVPFVMGTTGGDR 94 (264)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~---g~plViGTTG~~~ 94 (264)
+.+.+..||+|.|=+|.. ..+.+.++.+.+. ++++++|=...+.
T Consensus 44 ~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 334456788667766533 4445555555555 4667777766664
No 447
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=28.43 E-value=2.8e+02 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=12.8
Q ss_pred ChHHHHHHHHhCC--CeEE
Q 024671 1 MGKAVIKAADAAG--LELV 17 (264)
Q Consensus 1 MG~~i~~~~~~~~--~eLv 17 (264)
+|+.|++.+.+.| .++.
T Consensus 9 lG~~iv~~Ll~~g~~~~Vr 27 (280)
T PF01073_consen 9 LGSHIVRQLLERGYIYEVR 27 (280)
T ss_pred HHHHHHHHHHHCCCceEEE
Confidence 4889999988766 5554
No 448
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=28.42 E-value=1.9e+02 Score=25.73 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=34.4
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCC--C-eEEecCCCCHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--P-FVMGTTGGDRV 95 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--p-lViGTTG~~~~ 95 (264)
.|....+..+.+..|| +|+=++.+......++.+.+.|. . .++|+..+...
T Consensus 173 ~d~~~~i~~l~~~~~d-~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 226 (333)
T cd06332 173 LDFSAELAQIRAAKPD-AVFVFLPGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQ 226 (333)
T ss_pred cchHHHHHHHHhcCCC-EEEEecccchHHHHHHHHHHcCcccCCceeccCCCCCH
Confidence 4555556666667799 45556665667788999999887 3 46677666544
No 449
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=28.41 E-value=2e+02 Score=26.16 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=21.1
Q ss_pred CCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecCC
Q 024671 58 PNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 58 ~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTTG 91 (264)
.| ++||++. +..+...++.+...|.-+.+|..+
T Consensus 242 ~d-~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 275 (351)
T cd08233 242 VD-VSFDCAGVQATLDTAIDALRPRGTAVNVAIWE 275 (351)
T ss_pred CC-EEEECCCCHHHHHHHHHhccCCCEEEEEccCC
Confidence 67 6888774 556666666665566656666544
No 450
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=28.29 E-value=1.1e+02 Score=23.70 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhcCCC-e---EEecCCCCHHHHHHHHH
Q 024671 68 PAAVNGNAELYSKVGVP-F---VMGTTGGDRVRLHETIE 102 (264)
Q Consensus 68 p~~~~~~~~~~~~~g~p-l---ViGTTG~~~~~~~~l~~ 102 (264)
++.+.++++.+.+.|++ . ++|..|.++++++++.+
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~ 164 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIR 164 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhC
Confidence 45667888999999887 4 44555566667666543
No 451
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.22 E-value=1.3e+02 Score=27.78 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=17.9
Q ss_pred cCCCeEE-ecCCCCHHHHHHHHHc
Q 024671 81 VGVPFVM-GTTGGDRVRLHETIEN 103 (264)
Q Consensus 81 ~g~plVi-GTTG~~~~~~~~l~~~ 103 (264)
.++|+|+ |+||.+++++++..+.
T Consensus 201 ~~vPLVlHGgSG~~~e~~~~ai~~ 224 (284)
T PRK12857 201 VNIPIVLHGSSGVPDEAIRKAISL 224 (284)
T ss_pred hCCCEEEeCCCCCCHHHHHHHHHc
Confidence 3788887 8999998888776554
No 452
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=28.14 E-value=2.9e+02 Score=25.99 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=42.0
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCe-----EEecCCCCHHHHHHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-----VMGTTGGDRVRLHET 100 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~pl-----ViGTTG~~~~~~~~l 100 (264)
.|....|.++....+|.|++|-+ |+.+...++.+.+.|... ++|+-||...++..+
T Consensus 165 ~d~~~~L~~ik~~~~~~iil~~~-~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l~~~ 225 (371)
T cd06388 165 ASYRRLLEDLDRRQEKKFVIDCE-IERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERF 225 (371)
T ss_pred HHHHHHHHHhcccccEEEEEECC-HHHHHHHHHHHHhcCccccceEEEEccCccccccHHHH
Confidence 36666778777778886666665 566789999999999864 888889876666554
No 453
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=28.09 E-value=3.3e+02 Score=22.10 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=29.6
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh--cCCCeEEecCCCCHHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGDRVR 96 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~plViGTTG~~~~~ 96 (264)
+.++++..+....+|.|++|...|.. ..+.++...+ ...|+|+-|.--+.+.
T Consensus 30 ~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~~~ 84 (218)
T TIGR01387 30 NGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSVAD 84 (218)
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCHHH
Confidence 33444444445578988999887742 2344444443 4578777664333333
No 454
>PRK08339 short chain dehydrogenase; Provisional
Probab=27.99 E-value=2.8e+02 Score=24.32 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=43.8
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhc---CCCCEEEEECCChHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD---KYPNMIVVDYTVPAAVNGNAEL 77 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~---~~~d~VvIDFS~p~~~~~~~~~ 77 (264)
+|+++++.+.+.|..++.. ++... ++++..+.+.. .....+..|.+.++.+...++.
T Consensus 20 IG~aia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 20 IGFGVARVLARAGADVILL-SRNEE-------------------NLKKAREKIKSESNVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4888988888888887643 32210 11111111111 1122356799999999888887
Q ss_pred HHhcC-CCeEEecCCC
Q 024671 78 YSKVG-VPFVMGTTGG 92 (264)
Q Consensus 78 ~~~~g-~plViGTTG~ 92 (264)
..+.| +.+++-..|.
T Consensus 80 ~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 80 LKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHhhCCCcEEEECCCC
Confidence 76544 6688877775
No 455
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=27.98 E-value=3.4e+02 Score=22.33 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=35.7
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHHH-HHHHHHHHh-cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAAV-NGNAELYSK-VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~~-~~~~~~~~~-~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
+.++++..+....+|.|++|...|... .+.++...+ ...|+|+-|.-.+.+...... ..+.--++.-.++..
T Consensus 33 ~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~-~~ga~~~l~kP~~~~ 106 (225)
T PRK10529 33 TLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSARSEESDKIAAL-DAGADDYLSKPFGIG 106 (225)
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHH-HcCCCEEEeCCCCHH
Confidence 334444444445689889998887531 233333222 457777765433443333222 233333344445543
No 456
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=27.98 E-value=3.5e+02 Score=22.39 Aligned_cols=72 Identities=10% Similarity=0.061 Sum_probs=37.6
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHH-HHHHHHHHHh--cCCCeEEecCCCCHHHHHHHHHccCCcEEEccchhHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
+.++++..+....+|.|++|...|.. -.+.++...+ ..+|+|+-|.--+.+..... -.++..-++.-.++..
T Consensus 32 ~~~~~~~~~~~~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~ 106 (227)
T PRK09836 32 NGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKG-LELGADDYLVKPFAFA 106 (227)
T ss_pred CHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHH-HhCCCCEEEeCCCCHH
Confidence 33444444444568988999888753 2333443333 35787776643333333222 2345444454555554
No 457
>PRK12744 short chain dehydrogenase; Provisional
Probab=27.97 E-value=3.5e+02 Score=23.26 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=25.9
Q ss_pred EEEECCChHHHHHHHHHHHhc--CCCeEEecCCC
Q 024671 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~plViGTTG~ 92 (264)
+-.|++.++.+...++.+.+. ++.+++-+.|.
T Consensus 66 ~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 66 FQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred EecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 467999999999988887653 57788888885
No 458
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=27.90 E-value=1.5e+02 Score=27.15 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=14.3
Q ss_pred ChHHHHHHHHhCCCeEEE
Q 024671 1 MGKAVIKAADAAGLELVP 18 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~ 18 (264)
||+.+++.+...|+++..
T Consensus 162 iG~avA~~L~~~G~~V~v 179 (287)
T TIGR02853 162 TGMTIARTFSALGARVFV 179 (287)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 688899888888887663
No 459
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.89 E-value=1.2e+02 Score=27.80 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=35.7
Q ss_pred CCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCe-EEecCCCCHHH
Q 024671 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-VMGTTGGDRVR 96 (264)
Q Consensus 43 ~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~pl-ViGTTG~~~~~ 96 (264)
..|....+.++.+..||. ||=+..+......++.+.+.|... +++..++....
T Consensus 179 ~~d~s~~i~~i~~~~~d~-v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (347)
T cd06335 179 DKDMTAQLLRAKAAGADA-IIIVGNGPEGAQIANGMAKLGWKVPIISHWGLSGGN 232 (347)
T ss_pred CccHHHHHHHHHhCCCCE-EEEEecChHHHHHHHHHHHcCCCCcEecccCCcCch
Confidence 346667777777778995 444556666777889999888763 45655554433
No 460
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=27.86 E-value=2.6e+02 Score=26.79 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=20.8
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
+-.+++.+.+.+...++.|.+.+.|+++.++-
T Consensus 20 V~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~ 51 (347)
T PRK13399 20 VPAFNVNNMEQILAIMEAAEATDSPVILQASR 51 (347)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEEEECCc
Confidence 34666666666666676666677776666643
No 461
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.84 E-value=1.4e+02 Score=27.23 Aligned_cols=93 Identities=13% Similarity=0.086 Sum_probs=46.5
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccc--c-----ccc-cCcee------EeecCCchhhHHhhhhcCCCCEEEEECC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQ--K-----VEV-CGKEI------QVHGLSDRESVLASVFDKYPNMIVVDYT 66 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~--~-----~~~-~~~~i------~i~~~~dl~~~l~~~~~~~~d~VvIDFS 66 (264)
||..++..+...|+++.. ++........ . .+. ...++ .+....+.++++ ..+| +||...
T Consensus 15 mG~~iA~~l~~~g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~aD-lVi~av 87 (311)
T PRK06130 15 MGSGIAALFARKGLQVVL-IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV-----SGAD-LVIEAV 87 (311)
T ss_pred HHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh-----ccCC-EEEEec
Confidence 799999888888888775 4432211100 0 000 00000 011123444333 2578 677776
Q ss_pred ChHH--HHHHHH---HHHhcCCCeEEecCCCCHHHHHHH
Q 024671 67 VPAA--VNGNAE---LYSKVGVPFVMGTTGGDRVRLHET 100 (264)
Q Consensus 67 ~p~~--~~~~~~---~~~~~g~plViGTTG~~~~~~~~l 100 (264)
.|.. ....+. .+++.+.-+++-|+|++..+++..
T Consensus 88 ~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~ 126 (311)
T PRK06130 88 PEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQA 126 (311)
T ss_pred cCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhh
Confidence 5532 333333 333344445578889887666554
No 462
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.81 E-value=1.4e+02 Score=23.05 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=24.0
Q ss_pred CCEEEEECCCh---HHHHHHHHHHHhcCCCeEEecCCC
Q 024671 58 PNMIVVDYTVP---AAVNGNAELYSKVGVPFVMGTTGG 92 (264)
Q Consensus 58 ~d~VvIDFS~p---~~~~~~~~~~~~~g~plViGTTG~ 92 (264)
.| ++|=||.+ ..+.+.++.|.++|+|+|.=|...
T Consensus 48 ~d-~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 48 GD-VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CC-EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35 55555544 678899999999998866655443
No 463
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.51 E-value=3.3e+02 Score=24.13 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=39.2
Q ss_pred chhhHHhhhhcCCCCEEEE-E--CCChHHHHHHHHHHHhcCCCeEEecCCCC-HHHHHHHHHccCCcEEEccc
Q 024671 45 DRESVLASVFDKYPNMIVV-D--YTVPAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvI-D--FS~p~~~~~~~~~~~~~g~plViGTTG~~-~~~~~~l~~~~~~~~v~s~N 113 (264)
+.+..+..+.+..+|.++| | +-.++-..+.++.|.++|+..++-.+=-+ .+.++.+.+.+..-++++.|
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 3444444455556774344 3 33346677888888888887766554333 45566666554433333544
No 464
>PRK07806 short chain dehydrogenase; Provisional
Probab=27.50 E-value=3.8e+02 Score=22.71 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.+.|++++.. .+..... ...+...+... ......+..|.+.|+.+...++...+
T Consensus 18 iG~~l~~~l~~~G~~V~~~-~r~~~~~---------------~~~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 18 IGADTAKILAGAGAHVVVN-YRQKAPR---------------ANKVVAEIEAA-GGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCchHh---------------HHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4888888888788887753 2221000 00111111110 01122345699999999888877654
Q ss_pred c--CCCeEEecCCCC
Q 024671 81 V--GVPFVMGTTGGD 93 (264)
Q Consensus 81 ~--g~plViGTTG~~ 93 (264)
. ++.+|+-..|..
T Consensus 81 ~~~~~d~vi~~ag~~ 95 (248)
T PRK07806 81 EFGGLDALVLNASGG 95 (248)
T ss_pred hCCCCcEEEECCCCC
Confidence 3 577888777764
No 465
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=27.43 E-value=37 Score=29.85 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHhcCCCeEEecCC--CCHHHHHHHHHccCCcEEEccchhHH
Q 024671 76 ELYSKVGVPFVMGTTG--GDRVRLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 76 ~~~~~~g~plViGTTG--~~~~~~~~l~~~~~~~~v~s~NfSlG 117 (264)
+.+.+.|+|++=|+++ -+.++..++++.-+.|+++=|.+..|
T Consensus 7 ~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggG 50 (211)
T PF02786_consen 7 KLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGG 50 (211)
T ss_dssp HHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSST
T ss_pred HHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeeccccc
Confidence 4677889999999998 67778878888778898887777665
No 466
>PRK14852 hypothetical protein; Provisional
Probab=27.42 E-value=1e+02 Score=33.54 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=24.8
Q ss_pred CCCEEEEECCC---hHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYTV---PAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS~---p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +|||-+. -+.-......|.++|+|+|.++.
T Consensus 422 ~~D-iVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 422 DVD-LLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred CCC-EEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 578 7888443 34446667789999999998877
No 467
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.40 E-value=2e+02 Score=26.23 Aligned_cols=33 Identities=6% Similarity=-0.131 Sum_probs=17.8
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTT 90 (264)
.+| +++|++. ++.+...++.....|.=+.+|..
T Consensus 235 ~~d-~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 235 GVD-AVIIAGGGQDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred CCc-EEEECCCCHHHHHHHHHHhhcCCEEEEeccc
Confidence 356 6777765 34555555555455544445543
No 468
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=27.38 E-value=3.2e+02 Score=26.39 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=45.9
Q ss_pred hHHHHHHHH-h--CCCeEEEEEcCCCccccccccccCceeEeecC-CchhhHHhhhhcCCCCEEEEE--CCChHHHHHHH
Q 024671 2 GKAVIKAAD-A--AGLELVPVSFGTEEESGQKVEVCGKEIQVHGL-SDRESVLASVFDKYPNMIVVD--YTVPAAVNGNA 75 (264)
Q Consensus 2 G~~i~~~~~-~--~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~-~dl~~~l~~~~~~~~d~VvID--FS~p~~~~~~~ 75 (264)
|+.+++.+. + .++.++|.++..+...+.. .++++.+. +++.+.+. +...|.|+|- ...++...+.+
T Consensus 140 ~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-----~gvpVlg~~~dl~~~i~---~~~vd~ViIA~p~~~~~~~~~ll 211 (451)
T TIGR03023 140 GRRLAERLARNPELGYRVVGFFDDRPDARTGV-----RGVPVLGKLDDLEELIR---EGEVDEVYIALPLAAEDRILELL 211 (451)
T ss_pred HHHHHHHHHhCccCCcEEEEEEeCCCcccccc-----CCCCccCCHHHHHHHHH---hcCCCEEEEeeCcccHHHHHHHH
Confidence 456666665 2 3688999887433221111 23555432 33444333 3456744443 44566788899
Q ss_pred HHHHhcCCCeEEe
Q 024671 76 ELYSKVGVPFVMG 88 (264)
Q Consensus 76 ~~~~~~g~plViG 88 (264)
+.|.+.|+++.+-
T Consensus 212 ~~~~~~gv~V~vv 224 (451)
T TIGR03023 212 DALEDLTVDVRLV 224 (451)
T ss_pred HHHHhcCCEEEEe
Confidence 9999999877664
No 469
>PRK13753 dihydropteroate synthase; Provisional
Probab=27.33 E-value=2e+02 Score=26.59 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=40.7
Q ss_pred HHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEE
Q 024671 49 VLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVI 110 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~ 110 (264)
+++.+.....- +-||=.+|+.+. .|++.|..+|-=.+|++..++..++...+.|+|+
T Consensus 68 vI~~l~~~~~~-ISIDT~~~~va~----~al~aGadiINDVsg~~d~~~~~vva~~~~~vVl 124 (279)
T PRK13753 68 LLDALSDQMHR-VSIDSFQPETQR----YALKRGVGYLNDIQGFPDPALYPDIAEADCRLVV 124 (279)
T ss_pred HHHHHHhCCCc-EEEECCCHHHHH----HHHHcCCCEEEeCCCCCchHHHHHHHHcCCCEEE
Confidence 34444433333 789988888655 6667899999999999876776766667777755
No 470
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=27.32 E-value=4.5e+02 Score=23.49 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=57.0
Q ss_pred ChHHHHHHHHhCC----CeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHH
Q 024671 1 MGKAVIKAADAAG----LELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (264)
Q Consensus 1 MG~~i~~~~~~~~----~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (264)
||+.+++.+.+.+ .++.. +++.++..-+.+ ....++.+. .+..++.+ .+| |||=-..|..+.+.++
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v-~~r~~~~~~~~l-~~~~g~~~~--~~~~e~~~-----~aD-vVilav~p~~~~~vl~ 83 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITV-SNRSNETRLQEL-HQKYGVKGT--HNKKELLT-----DAN-ILFLAMKPKDVAEALI 83 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEE-ECCCCHHHHHHH-HHhcCceEe--CCHHHHHh-----cCC-EEEEEeCHHHHHHHHH
Confidence 8999999887655 55553 444321100110 011123332 34333332 578 5666667877777666
Q ss_pred HHHh---cCCCeEEecCCCCHHHHHHHHHccCCcEEEc-cchh
Q 024671 77 LYSK---VGVPFVMGTTGGDRVRLHETIENSNVYAVIS-PQMG 115 (264)
Q Consensus 77 ~~~~---~g~plViGTTG~~~~~~~~l~~~~~~~~v~s-~NfS 115 (264)
.... .+.-+|.-..|.+.++++++.. .+.|++.+ ||+.
T Consensus 84 ~l~~~~~~~~liIs~~aGi~~~~l~~~~~-~~~~v~r~mPn~~ 125 (279)
T PRK07679 84 PFKEYIHNNQLIISLLAGVSTHSIRNLLQ-KDVPIIRAMPNTS 125 (279)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHcC-CCCeEEEECCCHH
Confidence 5543 3444555568999888877643 23566654 6655
No 471
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.30 E-value=2.6e+02 Score=26.17 Aligned_cols=54 Identities=6% Similarity=0.119 Sum_probs=39.5
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHccCCcEEEccchh
Q 024671 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMG 115 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~~~~~~~v~s~NfS 115 (264)
|.+--.....+...++.+.++|+++++.-.++..+.++.+++ +++++++.|.+.
T Consensus 195 v~vHa~~~~~i~~~l~~~~e~g~~~~i~H~~~~~~~~~~la~-~gv~v~~~P~~~ 248 (359)
T cd01309 195 VRIHAHRADDILTAIRIAKEFGIKITIEHGAEGYKLADELAK-HGIPVIYGPTLT 248 (359)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEECchhHHHHHHHHHH-cCCCEEECcccc
Confidence 678888888888899999999999665443333555666655 578888888653
No 472
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=27.19 E-value=2.2e+02 Score=25.25 Aligned_cols=34 Identities=21% Similarity=-0.059 Sum_probs=26.7
Q ss_pred CCCEEEEECCChHHHHHHHHHHHhcCCCeEEecCC
Q 024671 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG 91 (264)
.+| +++|++....+...++.....|.=+.+|+++
T Consensus 213 ~~d-~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~ 246 (326)
T cd08289 213 RWA-GAVDPVGGKTLAYLLSTLQYGGSVAVSGLTG 246 (326)
T ss_pred CcC-EEEECCcHHHHHHHHHHhhcCCEEEEEeecC
Confidence 467 7899887777888888777788888888764
No 473
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.16 E-value=3.6e+02 Score=25.84 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHhcCC-CeEEe-------cCCCCHH-----HHHHHHHccCCcEEEccchhHHHHHHHHHHHHHHHhcC
Q 024671 67 VPAAVNGNAELYSKVGV-PFVMG-------TTGGDRV-----RLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP 133 (264)
Q Consensus 67 ~p~~~~~~~~~~~~~g~-plViG-------TTG~~~~-----~~~~l~~~~~~~~v~s~NfSlGv~ll~~~~~~aa~~l~ 133 (264)
+++-...-++++.+.|. .++++ +|+++.. -+..+++..+.|+++=|.-|.|--=+...+..+|-.+
T Consensus 220 t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~- 298 (352)
T PRK13396 220 TIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAA- 298 (352)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhh-
Confidence 56667777777777766 46666 3355422 3444666667888888888888322222334444444
Q ss_pred CCCCCCCEEEEeecCCCCC
Q 024671 134 GAFSGYSLQVLESHQAGKL 152 (264)
Q Consensus 134 ~~~~~~dieI~E~HH~~K~ 152 (264)
+.|==++|.|-.-.+
T Consensus 299 ----GAdGliIE~H~~pd~ 313 (352)
T PRK13396 299 ----GTDSLMIEVHPNPAK 313 (352)
T ss_pred ----CCCeEEEEecCCccc
Confidence 356668999876544
No 474
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=27.05 E-value=1.9e+02 Score=26.07 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=36.8
Q ss_pred EEEEECCChHHHHHHHHHHHhcCCCeEEecCCCC----HHHHHHHHHccCCcEEEcc
Q 024671 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD----RVRLHETIENSNVYAVISP 112 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~plViGTTG~~----~~~~~~l~~~~~~~~v~s~ 112 (264)
.+.||-++|+++..-++.| .|.++|=-.+|.. .+.+-.++...+.++|.-+
T Consensus 72 piSIDT~~~~v~e~aL~~~--~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~ 126 (252)
T cd00740 72 PLMLDSTNWEVIEAGLKCC--QGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLA 126 (252)
T ss_pred cEEeeCCcHHHHHHHHhhC--CCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEec
Confidence 4799999999988888776 4999999999986 2234344555667765433
No 475
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.04 E-value=2.4e+02 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=23.0
Q ss_pred CCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
...| ++||++..+.+...++.....|.=+.+|.+
T Consensus 242 ~~~d-~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~ 275 (350)
T cd08274 242 EPVD-VVADVVGGPLFPDLLRLLRPGGRYVTAGAI 275 (350)
T ss_pred CCCc-EEEecCCHHHHHHHHHHhccCCEEEEeccc
Confidence 3467 788988777777777666566665556654
No 476
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=27.03 E-value=1.6e+02 Score=27.41 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=32.8
Q ss_pred chhhHHhhhhcCCCCEEEEECCC--------hHHHHHHHHH-HHhcCCCeEE-ecCCCCHHHHHHHHHc
Q 024671 45 DRESVLASVFDKYPNMIVVDYTV--------PAAVNGNAEL-YSKVGVPFVM-GTTGGDRVRLHETIEN 103 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~--------p~~~~~~~~~-~~~~g~plVi-GTTG~~~~~~~~l~~~ 103 (264)
|++++..=+....+|...|-|-+ |.-=.+.++. ..+.++|||+ |+||.+++++++..+.
T Consensus 157 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~ 225 (286)
T PRK08610 157 DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPF 225 (286)
T ss_pred CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHC
Confidence 44554333334456755566632 2221222222 2235899887 9999998888776553
No 477
>PRK07831 short chain dehydrogenase; Provisional
Probab=26.98 E-value=2.8e+02 Score=24.01 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=26.0
Q ss_pred EEEECCChHHHHHHHHHHHhc--CCCeEEecCCCC
Q 024671 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGGD 93 (264)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~plViGTTG~~ 93 (264)
+..|.+.++.+...++.+.+. ++.+|+-..|..
T Consensus 74 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 108 (262)
T PRK07831 74 VVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGLG 108 (262)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 457999999999988887664 567888888863
No 478
>PRK06180 short chain dehydrogenase; Provisional
Probab=26.97 E-value=3.4e+02 Score=23.79 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (264)
+|+.+++.+.+.|+++++. ++... +++. +..........+..|++.++.+...++.+.+
T Consensus 16 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~-l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGT-VRSEA-------------------ARAD-FEALHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred HHHHHHHHHHhCcCEEEEE-eCCHH-------------------HHHH-HHhhcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 4889998888889987753 32211 1111 1111001122356799999999998888766
Q ss_pred c--CCCeEEecCCCC
Q 024671 81 V--GVPFVMGTTGGD 93 (264)
Q Consensus 81 ~--g~plViGTTG~~ 93 (264)
. ++..|+=+.|..
T Consensus 75 ~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 75 TFGPIDVLVNNAGYG 89 (277)
T ss_pred HhCCCCEEEECCCcc
Confidence 3 577888887763
No 479
>PRK06841 short chain dehydrogenase; Provisional
Probab=26.97 E-value=3.8e+02 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.8
Q ss_pred EEEEECCChHHHHHHHHHHHhc--CCCeEEecCCCC
Q 024671 60 MIVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGGD 93 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~--g~plViGTTG~~ 93 (264)
.+..|++.++.+...++.+.+. ++..||-..|..
T Consensus 65 ~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 65 GLVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVA 100 (255)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3578999999998888877653 678888888863
No 480
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.96 E-value=3.2e+02 Score=23.88 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=25.1
Q ss_pred HHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEe
Q 024671 49 VLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (264)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViG 88 (264)
.+..+....+|.++|=-+.++...+.++.+.+.++|+|.-
T Consensus 48 ~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~ 87 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGW 87 (280)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 3455555678955553234454556677777889997654
No 481
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=26.95 E-value=3.5e+02 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=16.6
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCC
Q 024671 1 MGKAVIKAADAAGLELVPVSFGT 23 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~ 23 (264)
||..+++.+.+.|+++.. .++.
T Consensus 12 mG~~mA~~l~~~G~~V~v-~d~~ 33 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQV-FDVN 33 (296)
T ss_pred HHHHHHHHHHHCCCeEEE-EcCC
Confidence 899999888888888763 4543
No 482
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.90 E-value=3.2e+02 Score=27.30 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHhhhhcCCCCEEE----EECCChHHHHHHHHHHHhcC--CCeEEe-cCCCCHHHHHHHHHccCCcEEEccc
Q 024671 49 VLASVFDKYPNMIV----VDYTVPAAVNGNAELYSKVG--VPFVMG-TTGGDRVRLHETIENSNVYAVISPQ 113 (264)
Q Consensus 49 ~l~~~~~~~~d~Vv----IDFS~p~~~~~~~~~~~~~g--~plViG-TTG~~~~~~~~l~~~~~~~~v~s~N 113 (264)
-++++....||.|+ +|.-.-+.+..|.+...+.+ +|+|.. -+- -.++++++-..++.++.+.+|
T Consensus 112 ~l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyAGN~~-a~~~V~~il~~~~~~~~i~eN 182 (463)
T TIGR01319 112 DIEAIEESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVAGNKD-IQDEVQEIFDHADIFYRITDN 182 (463)
T ss_pred HHHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEeCCHH-HHHHHHHHHhcCCceEEecCC
Confidence 34444555677322 36666666677666666543 454432 111 123455544444566666666
No 483
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.71 E-value=5.9e+02 Score=24.62 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=15.1
Q ss_pred hHHHHHHHHhCCCeEEEEEcC
Q 024671 2 GKAVIKAADAAGLELVPVSFG 22 (264)
Q Consensus 2 G~~i~~~~~~~~~eLv~~~~~ 22 (264)
|+.+++.+.+.|+++.+ .|.
T Consensus 26 G~a~a~~L~~~G~~V~~-~D~ 45 (458)
T PRK01710 26 NIPLIKFLVKLGAKVTA-FDK 45 (458)
T ss_pred HHHHHHHHHHCCCEEEE-ECC
Confidence 67788888889998764 563
No 484
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=26.69 E-value=2.2e+02 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhc-CCCeEEecCC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKV-GVPFVMGTTG 91 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~-g~plViGTTG 91 (264)
.+| ++||++- |.++...++.+... |.-+++|.++
T Consensus 255 g~d-~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~ 290 (368)
T TIGR02818 255 GVD-YSFECIGNVNVMRAALECCHKGWGESIIIGVAG 290 (368)
T ss_pred CCC-EEEECCCCHHHHHHHHHHhhcCCCeEEEEeccC
Confidence 577 7899886 56666676655453 6667788753
No 485
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=26.68 E-value=3.7e+02 Score=26.12 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=29.4
Q ss_pred hhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHh-cCC-CeEEecCCCCH
Q 024671 46 RESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK-VGV-PFVMGTTGGDR 94 (264)
Q Consensus 46 l~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~-~g~-plViGTTG~~~ 94 (264)
....+.++.+..++ |||=|+.++.+...+..+.+ .+. ...|||.||..
T Consensus 220 ~~~~l~~i~~~~ar-vIvl~~~~~~~~~l~~~~~~~~~~~~~wi~s~~w~~ 269 (469)
T cd06365 220 AEKYYNQIMTSSAK-VIIIYGDTDSLLEVSFRLWQYLLIGKVWITTSQWDV 269 (469)
T ss_pred HHHHHHHhhcCCCe-EEEEEcCcHHHHHHHHHHHHhccCceEEEeeccccc
Confidence 34455566566788 56666667666655444444 433 36779989953
No 486
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=26.65 E-value=1.5e+02 Score=28.77 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHhcCCCeEEecC
Q 024671 67 VPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 67 ~p~~~~~~~~~~~~~g~plViGTT 90 (264)
.|+-..+.++...+.+.|++++|+
T Consensus 144 dpekfa~ave~v~~~~~pv~l~s~ 167 (467)
T COG1456 144 DPEKFAEAVEKVAEAGLPVILCSF 167 (467)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeC
Confidence 577777888888888888888884
No 487
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=26.54 E-value=3e+02 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=12.7
Q ss_pred CcEEE-ccchhHHHHHHHHHHHHHHHhc
Q 024671 106 VYAVI-SPQMGKQVVAFLAAMEIMAEQF 132 (264)
Q Consensus 106 ~~~v~-s~NfSlGv~ll~~~~~~aa~~l 132 (264)
..+.+ .|.+++-=|+ +..++++++.
T Consensus 102 tSVM~DgS~l~~eeNi--~~T~~vve~A 127 (286)
T PRK08610 102 TSVMIDASHSPFEENV--ATTKKVVEYA 127 (286)
T ss_pred CEEEEeCCCCCHHHHH--HHHHHHHHHH
Confidence 34433 5666766665 3344444443
No 488
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=26.46 E-value=1.2e+02 Score=31.60 Aligned_cols=36 Identities=17% Similarity=-0.051 Sum_probs=29.4
Q ss_pred CCCEEEEECC-ChHHHHHHHHHHHhcCCCeEEecCCCC
Q 024671 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTTGGD 93 (264)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~plViGTTG~~ 93 (264)
..| ||+|-+ +.++=.-.-..|.++++|+|.|.-||+
T Consensus 448 ~~D-vV~d~tDn~esR~L~n~~c~~~~kplI~aAlGfd 484 (664)
T TIGR01381 448 DHD-VVFLLLDSREARWLPTVLCSRHKKIAISAALGFD 484 (664)
T ss_pred hCC-EEEECCCCHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 578 899988 566656666789999999999998985
No 489
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=26.44 E-value=2e+02 Score=22.71 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=29.7
Q ss_pred chhhHHhhhhcCCCCEEEEECCChHHH-HHHHHHHHh--cCCCeEEecCCCCHHH
Q 024671 45 DRESVLASVFDKYPNMIVVDYTVPAAV-NGNAELYSK--VGVPFVMGTTGGDRVR 96 (264)
Q Consensus 45 dl~~~l~~~~~~~~d~VvIDFS~p~~~-~~~~~~~~~--~g~plViGTTG~~~~~ 96 (264)
+..+++..+....+|.+++|...|... .+.++...+ ..+|+++-|..-+.+.
T Consensus 35 ~~~~~~~~~~~~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~ 89 (202)
T PRK09390 35 SAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDVPL 89 (202)
T ss_pred CHHHHHHHhccCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHH
Confidence 334444444445688889998876532 333333333 3578888775544443
No 490
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=26.41 E-value=4.1e+02 Score=22.73 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=43.1
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCC--EEEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.++|.+++.. ++... ..+..+++.....+ .+..|++.++.+...++.+
T Consensus 20 IG~~la~~l~~~G~~v~~~-~r~~~--------------------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 20 IGRGVALRAAAEGARVVLV-DRSEL--------------------VHEVAAELRAAGGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCchH--------------------HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHH
Confidence 4888888888888887643 32210 01111111111222 2467999999999888887
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++..|+-..|.
T Consensus 79 ~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 79 VEAFGRIDVLINNVGG 94 (260)
T ss_pred HHHcCCCeEEEECCcc
Confidence 663 57788877763
No 491
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=26.39 E-value=4.3e+02 Score=22.87 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=35.6
Q ss_pred hhhHHhhhhcCCCCEEEEECCC---hH-HHHHHHHHHHh--cCCCeEEecCCCCHH-HHHHHHHccCCcEEEccchhHH
Q 024671 46 RESVLASVFDKYPNMIVVDYTV---PA-AVNGNAELYSK--VGVPFVMGTTGGDRV-RLHETIENSNVYAVISPQMGKQ 117 (264)
Q Consensus 46 l~~~l~~~~~~~~d~VvIDFS~---p~-~~~~~~~~~~~--~g~plViGTTG~~~~-~~~~l~~~~~~~~v~s~NfSlG 117 (264)
.+++++.+....||+|++|+.. |. .-.+.++...+ -+.|+|+=| +.+.+ ........++.--+++-|++..
T Consensus 26 ~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt-~~~~~~~~~~~~~~~Ga~gyl~K~~~~~ 103 (207)
T PRK11475 26 QSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIA-DDDIEARLIGSLSPSPLDGVLSKASTLE 103 (207)
T ss_pred HHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEe-CCCCHHHHHHHHHHcCCeEEEecCCCHH
Confidence 3444555444568966655544 43 22334444433 356777765 45433 2222221345444666677765
No 492
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=26.35 E-value=1.7e+02 Score=24.93 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCeEEecCCCCHHHHHHHHH
Q 024671 71 VNGNAELYSKVGVPFVMGTTGGDRVRLHETIE 102 (264)
Q Consensus 71 ~~~~~~~~~~~g~plViGTTG~~~~~~~~l~~ 102 (264)
+.+.++.+.+.|+++|+.| |=+...++.+.+
T Consensus 21 ~~~~l~~l~~~gi~~~i~T-gR~~~~~~~~~~ 51 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCT-SKTAAEVEYLQK 51 (221)
T ss_pred HHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHH
Confidence 7789999999999999987 444444444433
No 493
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.28 E-value=1.9e+02 Score=26.11 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=19.1
Q ss_pred CCCEEEEECCC-hHHHHHHHHHHHhcCCCeEEecCC
Q 024671 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTTG 91 (264)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~plViGTTG 91 (264)
..| +++|++. +..+...++.....|.=+.+|+++
T Consensus 237 ~~d-~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~ 271 (345)
T cd08287 237 GAD-AVLECVGTQESMEQAIAIARPGGRVGYVGVPH 271 (345)
T ss_pred CCC-EEEECCCCHHHHHHHHHhhccCCEEEEecccC
Confidence 466 6788774 455555555554555545555444
No 494
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.24 E-value=4.2e+02 Score=22.70 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=24.0
Q ss_pred HhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCeEEecC
Q 024671 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (264)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~plViGTT 90 (264)
++.+....+|.+++-.+.++ ....++.+.+.++|+|.--+
T Consensus 48 i~~l~~~~vdgii~~~~~~~-~~~~~~~~~~~~ipvV~i~~ 87 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDER-DPELVDALASLDLPIVLLDR 87 (269)
T ss_pred HHHHHHcCCCEEEEecCCCC-cHHHHHHHHhCCCCEEEEec
Confidence 34444456885566444332 24566777788999877643
No 495
>PRK05872 short chain dehydrogenase; Provisional
Probab=26.20 E-value=3.3e+02 Score=24.31 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=44.0
Q ss_pred ChHHHHHHHHhCCCeEEEEEcCCCccccccccccCceeEeecCCchhhHHhhhhcCCCCE--EEEECCChHHHHHHHHHH
Q 024671 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM--IVVDYTVPAAVNGNAELY 78 (264)
Q Consensus 1 MG~~i~~~~~~~~~eLv~~~~~~~~~~g~~~~~~~~~i~i~~~~dl~~~l~~~~~~~~d~--VvIDFS~p~~~~~~~~~~ 78 (264)
+|+.+++.+.+.|..++.. ++.. +.+++..+++. ...++ +..|++.++.+.+.++.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~-~r~~-------------------~~l~~~~~~l~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 21 IGAELARRLHARGAKLALV-DLEE-------------------AELAALAAELG-GDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHhc-CCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4788888887788877643 2211 11222222221 12232 237999999999988877
Q ss_pred Hhc--CCCeEEecCCC
Q 024671 79 SKV--GVPFVMGTTGG 92 (264)
Q Consensus 79 ~~~--g~plViGTTG~ 92 (264)
.+. ++.+||-..|.
T Consensus 80 ~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 80 VERFGGIDVVVANAGI 95 (296)
T ss_pred HHHcCCCCEEEECCCc
Confidence 653 58899988885
No 496
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=26.19 E-value=2.5e+02 Score=25.54 Aligned_cols=51 Identities=6% Similarity=-0.065 Sum_probs=34.3
Q ss_pred CchhhHHhhhhcCCCCEEEEECCChHHHHHHHHHHHhcCCCe-EEecCCCCHH
Q 024671 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-VMGTTGGDRV 95 (264)
Q Consensus 44 ~dl~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~pl-ViGTTG~~~~ 95 (264)
.|....+.++....||.|++..+.++ ....++.+.+.|... ++++++++..
T Consensus 188 ~d~~~~i~~l~~~~~d~v~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (342)
T cd06329 188 KDFSPYVAKIKASGADTVITGNWGND-LLLLVKQAADAGLKLPFYTPYLDQPG 239 (342)
T ss_pred CchHHHHHHHHHcCCCEEEEcccCch-HHHHHHHHHHcCCCceEEeccccchh
Confidence 35555566666778996667665554 568889998887763 5566666554
No 497
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=26.11 E-value=1.1e+02 Score=23.35 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=21.7
Q ss_pred hhhhcCCCCEEEEECCChHH----HHHHHHHHHhcCCCeE
Q 024671 51 ASVFDKYPNMIVVDYTVPAA----VNGNAELYSKVGVPFV 86 (264)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p~~----~~~~~~~~~~~g~plV 86 (264)
+.+.+...| .||.+..+.. -+..-+.|.++|+|++
T Consensus 61 ~~i~~~~id-~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 61 DLIKNGEIQ-LVINTPSGKRAIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred HHHHcCCeE-EEEECCCCCccCccHHHHHHHHHHhCCCEE
Confidence 333345566 6777765432 4566677777777777
No 498
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=26.10 E-value=4e+02 Score=22.87 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=16.8
Q ss_pred CCCeEEecCCCCH--HHHHHHHHccCCcEEEccch
Q 024671 82 GVPFVMGTTGGDR--VRLHETIENSNVYAVISPQM 114 (264)
Q Consensus 82 g~plViGTTG~~~--~~~~~l~~~~~~~~v~s~Nf 114 (264)
+..+|+.+|.--+ ..+.+++...++|++.+.+.
T Consensus 111 ~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~ 145 (202)
T TIGR02356 111 NVDLVLDCTDNFATRYLINDACVALGTPLISAAVV 145 (202)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4556666654322 13444555555666665543
No 499
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=25.96 E-value=1.2e+02 Score=23.91 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=12.5
Q ss_pred HHHHHHHHHhc-CCCeEEec
Q 024671 71 VNGNAELYSKV-GVPFVMGT 89 (264)
Q Consensus 71 ~~~~~~~~~~~-g~plViGT 89 (264)
.....+...+. |+++|.||
T Consensus 87 ~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 87 IDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred HHHHHHHHHHHhCCCEeeec
Confidence 44455555555 88888887
No 500
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.91 E-value=3.8e+02 Score=22.62 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=26.1
Q ss_pred EEEEECCChHHHHHHHHHHHh--cCCCeEEecCCC
Q 024671 60 MIVVDYTVPAAVNGNAELYSK--VGVPFVMGTTGG 92 (264)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~--~g~plViGTTG~ 92 (264)
.+-+|++.++.+.+.++...+ -++..|+-..|.
T Consensus 58 ~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 58 GYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 357899999999888887665 357899988885
Done!