BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024672
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTR2|TGD2_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis
thaliana GN=TGD2 PE=1 SV=1
Length = 381
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/264 (72%), Positives = 223/264 (84%), Gaps = 2/264 (0%)
Query: 2 IAQSRSSSNFLPCLPPKPKAKVTRIRALS-ADAGHDRPPSSSEGKNPLTAVMDVPRNIWR 60
IA R S N +P LPPKP+ + +RA S +DA H +P SS GKNPLT V+DVPRNIWR
Sbjct: 20 IACPRVSPNGVPYLPPKPRTRHLVVRAASNSDAAHGQP-SSDGGKNPLTVVLDVPRNIWR 78
Query: 61 RTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQA 120
+TL+PLSDFGFG+RS+WEGGVGLF+VSG LLALS AWLRGFQ+RSKFRKY VFE S A
Sbjct: 79 QTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFELSHA 138
Query: 121 CGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETL 180
GICTGTPVRIRGVTVG +IRVNPSLK+IEAV E+ED+K +IP+N+LVEVNQSGLLMET+
Sbjct: 139 SGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKIIIPRNSLVEVNQSGLLMETM 198
Query: 181 IDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIG 240
IDI PR+PIP P+VGPL PEC +EGLI+CDRQ +KG QGVSLDELVGI TR+GRE+E IG
Sbjct: 199 IDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGVSLDELVGIFTRIGREVEAIG 258
Query: 241 ITNSYLLAERVSSVIEEARPLLTK 264
+ N+Y LAER +SVIEEARPLL K
Sbjct: 259 VANTYSLAERAASVIEEARPLLKK 282
>sp|Q1XDB5|YCF22_PORYE Uncharacterized protein ycf22 OS=Porphyra yezoensis GN=ycf22 PE=4
SV=1
Length = 216
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 74 RSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRG 133
++ ++ +G + LL++SL W K Y A EF A GI GT VR+RG
Sbjct: 6 KNTYKEFLGACFLGSVTLLSISL-W-NIINQAGKNHSYKAFIEFDSAYGIQEGTAVRLRG 63
Query: 134 VTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPI---- 189
+ VG V+ ++ S SI +E++ T+IP+ +L+E NQ+GLL +T+IDI P +
Sbjct: 64 LPVGKVVGISQSSNSILTSIEIKSSSTIIPKTSLIETNQTGLLNDTVIDIIPLSKLSIDY 123
Query: 190 PTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREME 237
+ GPL C I+C+ +KG +G++ D+L+ TR+ + +
Sbjct: 124 SSIKAGPLSGAC-DNSQIICNLNYLKGERGLNYDDLIRATTRISQRFD 170
>sp|P51372|YCF22_PORPU Uncharacterized protein ycf22 OS=Porphyra purpurea GN=ycf22 PE=4
SV=1
Length = 209
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 106 SKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEKTVIPQN 165
SK + Y EF A GI GT VR+RG+ +G V+ ++ S SI +E++ T+IP+
Sbjct: 36 SKNKSYKVFVEFDSAYGIQEGTSVRLRGLPIGKVVGISQSSHSILTRIEIQSCNTIIPKT 95
Query: 166 ALVEVNQSGLLMETLIDITP----RDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVS 221
+L+E NQ+GLL +T+IDI P + GPL C I+C ++G +G++
Sbjct: 96 SLIETNQTGLLNDTIIDIVPFTTLNQEYHSLKEGPLSKTC-DSNQIICHLNYLQGERGLN 154
Query: 222 LDELVGIVTRLGREME 237
D+L+ TR+ + +
Sbjct: 155 YDDLIRATTRISQRFD 170
>sp|P46315|YCF22_ANTSP Uncharacterized protein ycf22 OS=Antithamnion sp. GN=ycf22 PE=4
SV=1
Length = 198
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 95 SLAWLRGFQLRSKFRKYLAVF-EFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVV 153
S+ W F ++ K + ++F EF+ A GI GT V +RGV +G + + + S+ +
Sbjct: 8 SIIW---FIVKYKKKHGYSLFVEFTHAYGIGEGTSVNMRGVNIGYIKNLQINSNSVLVSI 64
Query: 154 EVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTV---GPLDPECVREGLIMCD 210
++ EK +IP+N+++E NQ+ L T+IDI P + I ++ + C + I C+
Sbjct: 65 YIKSEKILIPKNSIIETNQTSLFNNTIIDIIPLEKINNYSIRDFNVFNQNC-YDLQIFCN 123
Query: 211 RQKMKGHQGVSLDELVGIVTRLGREME 237
Q + G +G++ D+L+ TR+ + +
Sbjct: 124 NQYIIGDRGLNYDDLIRATTRIAQRFD 150
>sp|P45029|Y1085_HAEIN Putative ABC transporter-binding protein HI_1085 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_1085 PE=3 SV=1
Length = 167
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 77 WEGGVGLFLVSGT---VLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRG 133
+E VGLFL+ G V L L +A ++GF ++ + Y F G+ P++I G
Sbjct: 7 YEFWVGLFLLLGIGALVFLGLRVANVQGF---AETKSYTVTATFDNIGGLKVRAPLKIGG 63
Query: 134 VTVGNVIRVNPSLKSI--EAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDIT 184
V +G V + KS + + + E IP+N+ + + SGLL E I +T
Sbjct: 64 VVIGRVSAITLDEKSYLPKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALT 116
>sp|P64604|MLAD_ECOLI Probable phospholipid ABC transporter-binding protein MlaD
OS=Escherichia coli (strain K12) GN=mlaD PE=1 SV=1
Length = 183
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 111 YLAVFEFSQACGICTGTPVRIRGVTVGNV--IRVNPSLKSIEAVVEVEDEKTVIPQNALV 168
Y F G+ +PV I GV VG V I ++P +E+E IP + +
Sbjct: 40 YTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSL 99
Query: 169 EVNQSGLLMETLIDITPRDPIPTPTVGPLDPE----CVREGLIMCDRQKMKGHQGVSLDE 224
+ SGLL E + + VG DPE +++G + D + + L++
Sbjct: 100 SIRTSGLLGEQYLAL---------NVGFEDPELGTAILKDGDTIQDTK-----SAMVLED 145
Query: 225 LVG 227
L+G
Sbjct: 146 LIG 148
>sp|P64605|MLAD_ECO57 Probable phospholipid ABC transporter-binding protein MlaD
OS=Escherichia coli O157:H7 GN=mlaD PE=3 SV=1
Length = 183
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 111 YLAVFEFSQACGICTGTPVRIRGVTVGNV--IRVNPSLKSIEAVVEVEDEKTVIPQNALV 168
Y F G+ +PV I GV VG V I ++P +E+E IP + +
Sbjct: 40 YTLYATFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSL 99
Query: 169 EVNQSGLLMETLIDITPRDPIPTPTVGPLDPE----CVREGLIMCDRQKMKGHQGVSLDE 224
+ SGLL E + + VG DPE +++G + D + + L++
Sbjct: 100 SIRTSGLLGEQYLAL---------NVGFEDPELGTAILKDGDTIQDTK-----SAMVLED 145
Query: 225 LVG 227
L+G
Sbjct: 146 LIG 148
>sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana
GN=At5g25050 PE=2 SV=1
Length = 499
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 39 PSSSEGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAW 98
PS S+ +T + + + +W L FGF RR F+++G VL +SL +
Sbjct: 80 PSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPY-------FILAG-VLGVVSLLF 131
Query: 99 LRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKS 148
+ L S YLA+F + + V I T N I+ +PSL S
Sbjct: 132 I---SLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIK-HPSLAS 177
>sp|P18522|POL1_BRSV RNA1 polyprotein OS=Beet ringspot virus PE=3 SV=1
Length = 2264
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 53 DVPRNIWRRT--LRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLRGFQLRSKFRK 110
D+P N + + ++ L G GR + E G G+ +++ ++L L AW GF ++
Sbjct: 1127 DIPENPYSNSAWIKILKAIGMGRTYLAENGCGILMIAAALILILVSAW--GF-----WKL 1179
Query: 111 YLAVFEFSQACG 122
++ +F S + G
Sbjct: 1180 FIGLFSGSMSLG 1191
>sp|P33053|RP147_VAR67 DNA-directed RNA polymerase 147 kDa polypeptide OS=Variola virus
(isolate Human/India/Ind3/1967) GN=RPO147 PE=3 SV=1
Length = 1286
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 135 TVGNVIRVNPSL-KSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPT 193
T G+ I+++P + S A + ++E ++ QN V QS L+ T + D P
Sbjct: 397 TEGDTIKISPGIANSQNADFDGDEEWMILEQNPKAVVEQSILMYPT--TLLKHDIHGAPV 454
Query: 194 VGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITN-------SYL 246
G + E V + Q + LDE++ I+ + GRE + G +YL
Sbjct: 455 YGSIQDEIVAA-------YSLFRIQDLCLDEVLNILGKYGREFDPKGKCKFSGKDIYTYL 507
Query: 247 LAERVS 252
+ E+++
Sbjct: 508 IGEKIN 513
>sp|P07392|RP147_VACCW DNA-directed RNA polymerase 147 kDa polypeptide OS=Vaccinia virus
(strain Western Reserve) GN=RPO147 PE=3 SV=1
Length = 1287
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 135 TVGNVIRVNPSL-KSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPT 193
T G+ I+++P + S A + ++E ++ QN + QS L+ T + D P
Sbjct: 397 TEGDTIKISPGIANSQNADFDGDEEWMILEQNPKAVIEQSILMYPT--TLLKHDIHGAPV 454
Query: 194 VGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITN-------SYL 246
G + E V + Q + LDE++ I+ + GRE + G +YL
Sbjct: 455 YGSIQDEIVAA-------YSLFRIQDLCLDEVLNILGKYGREFDPKGKCKFSGKDIYTYL 507
Query: 247 LAERVS 252
+ E+++
Sbjct: 508 IGEKIN 513
>sp|O57204|RP147_VACCA DNA-directed RNA polymerase 147 kDa polypeptide OS=Vaccinia virus
(strain Ankara) GN=RPO147 PE=3 SV=1
Length = 1286
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 135 TVGNVIRVNPSL-KSIEAVVEVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPT 193
T G+ I+++P + S A + ++E ++ QN + QS L+ T + D P
Sbjct: 397 TEGDTIKISPGIVNSQNADFDGDEEWMILEQNPKAVIEQSILMYPT--TLLKHDIHGAPV 454
Query: 194 VGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIGITN-------SYL 246
G + E V + Q + LDE++ I+ + GRE + G +YL
Sbjct: 455 YGSIQDEIVAA-------YSLFRIQDLCLDEVLNILGKYGREFDPKGKCKFSGKDIYTYL 507
Query: 247 LAERVS 252
+ E+++
Sbjct: 508 IGEKIN 513
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,634,676
Number of Sequences: 539616
Number of extensions: 4019348
Number of successful extensions: 11146
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11133
Number of HSP's gapped (non-prelim): 18
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)