Query 024672
Match_columns 264
No_of_seqs 184 out of 1559
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03094 Substrate binding sub 100.0 4.6E-57 1E-61 425.9 27.3 262 1-262 7-269 (370)
2 TIGR00996 Mtu_fam_mce virulenc 99.9 1.6E-24 3.6E-29 198.1 16.7 144 80-240 4-150 (291)
3 COG1463 Ttg2C ABC-type transpo 99.9 1.8E-22 3.8E-27 191.0 20.2 148 77-240 6-159 (359)
4 PF02470 MCE: mce related prot 99.8 5E-18 1.1E-22 127.9 11.1 76 110-186 2-81 (81)
5 PRK10807 paraquat-inducible pr 99.2 6.6E-10 1.4E-14 110.9 15.9 117 113-240 289-433 (547)
6 PRK10807 paraquat-inducible pr 98.9 1.5E-08 3.3E-13 101.2 13.2 102 80-188 19-136 (547)
7 COG3008 PqiB Paraquat-inducibl 98.8 3.2E-08 6.9E-13 97.5 11.6 102 80-187 22-138 (553)
8 COG3008 PqiB Paraquat-inducibl 96.4 0.0089 1.9E-07 59.6 7.3 59 109-168 160-222 (553)
9 PRK13254 cytochrome c-type bio 84.3 5.5 0.00012 33.6 7.6 30 124-157 49-79 (148)
10 PRK13159 cytochrome c-type bio 82.1 12 0.00027 31.9 8.8 47 123-178 48-95 (155)
11 PRK13165 cytochrome c-type bio 82.1 14 0.0003 31.7 9.2 48 123-179 54-102 (160)
12 PRK06531 yajC preprotein trans 79.9 0.9 2E-05 36.7 1.2 34 120-155 34-67 (113)
13 PF03100 CcmE: CcmE; InterPro 68.4 2.5 5.3E-05 34.7 1.0 34 122-158 46-80 (131)
14 PRK13150 cytochrome c-type bio 67.8 52 0.0011 28.2 9.0 46 124-178 55-101 (159)
15 PF14578 GTP_EFTU_D4: Elongati 67.0 13 0.00028 28.3 4.6 33 122-156 29-68 (81)
16 COG2332 CcmE Cytochrome c-type 65.7 51 0.0011 28.0 8.4 30 124-156 49-79 (153)
17 PF12911 OppC_N: N-terminal TM 61.4 8.3 0.00018 26.3 2.5 24 77-100 16-39 (56)
18 TIGR00156 conserved hypothetic 59.2 58 0.0013 26.8 7.5 56 116-171 47-107 (126)
19 PRK05886 yajC preprotein trans 58.2 12 0.00026 30.0 3.2 33 120-156 36-68 (109)
20 COG1862 YajC Preprotein transl 53.1 3.4 7.5E-05 32.5 -0.6 27 119-145 40-66 (97)
21 PF13437 HlyD_3: HlyD family s 47.9 1.1E+02 0.0024 22.9 7.2 49 109-157 34-95 (105)
22 PRK05585 yajC preprotein trans 46.9 17 0.00037 28.9 2.5 33 120-156 50-82 (106)
23 PRK10476 multidrug resistance 46.2 96 0.0021 28.9 7.8 36 109-144 243-286 (346)
24 PRK10053 hypothetical protein; 44.5 1.8E+02 0.0039 24.0 8.3 56 116-171 51-111 (130)
25 PF02699 YajC: Preprotein tran 44.3 5.5 0.00012 30.1 -0.7 33 120-156 34-66 (82)
26 TIGR00739 yajC preprotein tran 43.6 28 0.00061 26.5 3.1 33 120-156 35-67 (84)
27 COG3065 Slp Starvation-inducib 42.0 1.8E+02 0.0039 25.6 8.1 27 117-147 44-70 (191)
28 PF08669 GCV_T_C: Glycine clea 40.3 1.5E+02 0.0033 22.0 10.3 58 112-171 22-82 (95)
29 COG1792 MreC Cell shape-determ 39.1 1.9E+02 0.0041 26.8 8.5 34 112-145 133-166 (284)
30 TIGR00998 8a0101 efflux pump m 38.3 1.6E+02 0.0034 27.0 7.9 37 109-145 239-284 (334)
31 PF08113 CoxIIa: Cytochrome c 36.9 53 0.0011 21.0 3.0 23 80-102 5-27 (34)
32 TIGR01843 type_I_hlyD type I s 36.6 1.4E+02 0.0031 28.0 7.5 48 109-156 308-374 (423)
33 PF04085 MreC: rod shape-deter 35.7 60 0.0013 27.0 4.2 34 112-145 13-46 (152)
34 PF06679 DUF1180: Protein of u 34.8 1.3E+02 0.0029 25.8 6.2 36 58-100 80-115 (163)
35 KOG3970 Predicted E3 ubiquitin 30.8 73 0.0016 29.1 4.1 40 52-97 229-269 (299)
36 PRK13922 rod shape-determining 30.7 1.2E+02 0.0026 27.5 5.7 33 116-148 208-248 (276)
37 PF09890 DUF2117: Uncharacteri 30.1 43 0.00093 30.1 2.5 27 117-143 93-119 (215)
38 PRK03598 putative efflux pump 30.1 2.9E+02 0.0062 25.5 8.2 63 109-171 238-323 (331)
39 COG1566 EmrA Multidrug resista 28.8 3E+02 0.0064 26.5 8.1 25 136-160 61-89 (352)
40 PRK10559 p-hydroxybenzoic acid 27.5 3.8E+02 0.0083 24.7 8.6 36 109-144 189-231 (310)
41 PF12700 HlyD_2: HlyD family s 27.4 4.5E+02 0.0098 23.5 9.0 63 109-171 194-266 (328)
42 PRK15136 multidrug efflux syst 26.6 2.7E+02 0.0058 26.7 7.5 63 109-171 250-344 (390)
43 PF09871 DUF2098: Uncharacteri 26.5 1.3E+02 0.0028 23.4 4.3 31 123-153 3-34 (91)
44 PF04085 MreC: rod shape-deter 25.0 97 0.0021 25.7 3.7 33 116-148 87-127 (152)
45 TIGR02161 napC_nirT periplasmi 24.0 75 0.0016 27.7 2.9 8 55-62 2-9 (185)
46 PF02706 Wzz: Chain length det 23.1 52 0.0011 26.2 1.7 9 109-117 39-47 (152)
47 TIGR02971 heterocyst_DevB ABC 22.7 4.1E+02 0.009 24.2 7.8 35 109-143 238-279 (327)
48 TIGR03794 NHPM_micro_HlyD NHPM 22.1 4.2E+02 0.0092 25.4 8.0 36 111-146 294-340 (421)
49 PRK13922 rod shape-determining 22.0 4.5E+02 0.0098 23.7 7.8 34 112-145 135-168 (276)
50 PF14155 DUF4307: Domain of un 21.9 3.9E+02 0.0085 21.1 6.5 39 145-186 45-87 (112)
51 PF11947 DUF3464: Protein of u 21.9 1.7E+02 0.0036 25.0 4.5 38 49-97 48-85 (153)
52 PRK10617 cytochrome c-type pro 21.0 93 0.002 27.5 2.9 8 55-62 11-18 (200)
53 TIGR00219 mreC rod shape-deter 20.9 2.5E+02 0.0054 26.0 5.9 33 113-145 134-167 (283)
54 COG1792 MreC Cell shape-determ 20.6 2.1E+02 0.0045 26.5 5.3 41 116-156 206-254 (284)
No 1
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=100.00 E-value=4.6e-57 Score=425.90 Aligned_cols=262 Identities=73% Similarity=1.217 Sum_probs=246.7
Q ss_pred CCcCCCCCCCCCCCCCCCchhhhhhhhhcccCCCCCCCCCCC-CCCCccccccccchhhhhhccccCccccccccchhhH
Q 024672 1 MIAQSRSSSNFLPCLPPKPKAKVTRIRALSADAGHDRPPSSS-EGKNPLTAVMDVPRNIWRRTLRPLSDFGFGRRSVWEG 79 (264)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~m~rrs~~e~ 79 (264)
++.+++.+.+++||+|+|+++|...+|+.++++++++.+++. ++|||+++++++||++|||++|||+||||+||++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrsvrEg 86 (370)
T PLN03094 7 MISSLPSSSNGLPFLPPKPQTRLLLVRAMSNATAAAASPPSSEGSKNPLAVVLEVPRNIWRQTLKPLSDFGFGKRSVWEG 86 (370)
T ss_pred ccccCCCCCCCCCCCCCchHHHHHHHHHhcccccCCCCCcccccCCCcchhhhhhhHHHHHHhhcchhhcCCcchhHHHH
Confidence 467889999999999999999999999999999998885554 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEecCc
Q 024672 80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEK 159 (264)
Q Consensus 80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~~~~ 159 (264)
+||+|++++++++++++.|+.++.++..+.+|+++++|++++||++|++|+|+||+||+|++|++++++++|+++|++++
T Consensus 87 ~VGlfvL~gi~ll~~~~~~L~g~~~~~~~~~Y~~~a~F~~a~GL~~Gs~Vr~~GV~VG~V~~I~l~~~~V~V~~~I~~~~ 166 (370)
T PLN03094 87 GVGLFLLSGAALLALTLAWLRGFQLRSKFRKYQAVFEFPQACGICVGTPVRIRGVTVGNVVRVRPSLEKIDVVVEVEDDK 166 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEecCCCCCCCCCCceEEcCEEeeEEEEEEecCCeEEEEEEEecCc
Confidence 99999999999999999999998876666899999999999999999999999999999999999999999999997567
Q ss_pred cccCCCcEEEEEeCCcccceEEEEecCCCCCCCCCCCCCccccccCceecCCCeecccCCCCHHHHHHHHHHHHhhcCCC
Q 024672 160 TVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGI 239 (264)
Q Consensus 160 ~~Ip~ds~a~I~~~~llG~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~~~~~~sld~Ll~~l~~l~~~l~~~ 239 (264)
++||+|+.|.|.+.||+|++||+|+|+.+.|....+|++++|..++.++|+|++|++++++++++|+++++++.++++++
T Consensus 167 ~~Ip~ds~A~I~~~gLLG~~~I~I~P~~~~p~~~~gpl~~dc~~~~~Ilcdg~~I~g~~~vsld~L~~~ltrL~~~~~~~ 246 (370)
T PLN03094 167 IVIPRNSLVEVNQSGLIMETLIDITPRDPIPKPSVGPLDPECEKEGLIVCDRERIKGEQGVSLDELVGICTRLAREMEAI 246 (370)
T ss_pred eecCCCCEEEEeeCCcccceeEEEecCCCCCcccCCCCCccCCccceeecCCCeeccCCCCCHHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999999999998888899999999977778999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcccc
Q 024672 240 GITNSYLLAERVSSVIEEARPLL 262 (264)
Q Consensus 240 ~l~~l~~~~e~~~~~l~ea~p~l 262 (264)
+++++.+.++.+++.++++++++
T Consensus 247 ~v~~l~~~~~~~a~~~~~~~~ll 269 (370)
T PLN03094 247 GVAKMYALAERAADLMEEARPLL 269 (370)
T ss_pred chhHHHHHHHHHHHHHhhcHHHH
Confidence 99999999999999999888764
No 2
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=99.92 E-value=1.6e-24 Score=198.14 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEecCc
Q 024672 80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVEDEK 159 (264)
Q Consensus 80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~~~~ 159 (264)
.++++++++++++++.+.|+.+.. ++ ..+|+++++|+++.||.+|++|+|+||+||+|++|++++++++|+++++ ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~f~~~~GL~~g~~V~~~Gv~VG~V~~i~~~~~~v~v~~~i~-~~ 80 (291)
T TIGR00996 4 VFAAVVLAAVVVLGVVFLRLPFRG-FG-PGTYTVYAYFTDAGGLYPGSKVRVRGVPVGKVTAISLPGNGARVTFSLD-RG 80 (291)
T ss_pred hhHHHHHHHHHHHhheeecccccc-CC-CCCeEEEEEECCCcCCCCCCceEEcceEEEEEEEEEecCCEEEEEEEec-CC
Confidence 345555555555555555666544 33 2578999999999999999999999999999999999999999999995 77
Q ss_pred cccCCCcEEEEEeCCcccceEEEEecCCCCCCCCCCCCCccccccCceecCCCeecc---cCCCCHHHHHHHHHHHHhhc
Q 024672 160 TVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKG---HQGVSLDELVGIVTRLGREM 236 (264)
Q Consensus 160 ~~Ip~ds~a~I~~~~llG~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~~---~~~~sld~Ll~~l~~l~~~l 236 (264)
++||+|++|.|.+.+++|++||+|.|+.. +.++.|++|++|+. ..+.+++++++++.++++++
T Consensus 81 ~~i~~~~~a~i~~~~l~G~~~i~l~~~~~--------------~~~~~L~~g~~ip~~~t~~~~~l~~ll~~~~~ll~~~ 146 (291)
T TIGR00996 81 VTIPANATAAIRSTTLLGSRYVELTPPKG--------------PGGPPLPPGGVIPLARTSVPPEIDDLLGSLTRLLNGL 146 (291)
T ss_pred cccCCCCEEEEeeccccceeEEEeeCCCC--------------CCCCcCCCcCEeChhhCCCCccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999852 12467999999994 46889999999999999988
Q ss_pred CCCc
Q 024672 237 EGIG 240 (264)
Q Consensus 237 ~~~~ 240 (264)
++..
T Consensus 147 ~~~~ 150 (291)
T TIGR00996 147 DPEK 150 (291)
T ss_pred CHHH
Confidence 7643
No 3
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.8e-22 Score=190.98 Aligned_cols=148 Identities=27% Similarity=0.409 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeC--CCeEEEEE
Q 024672 77 WEGGVGLFLVSGTVLLALSLAWLRGFQLR-SKFRKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPS--LKSIEAVV 153 (264)
Q Consensus 77 ~e~~VGlfvl~~lv~l~~~~~~l~g~~~~-~~~~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~--~~~v~v~v 153 (264)
.+.++|+|+++++++++++.+|+...... ....+|+++++|++++||.+|++|+|+||+||+|++|.++ +..++|++
T Consensus 6 ~~~~v~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~a~f~~~~GL~~gs~V~~~GV~VG~V~~I~~~~~~~~~~v~~ 85 (359)
T COG1463 6 NRVLVGLFLLLGLLAVLLFVLWLATLPGLPGGTGTYTVTAYFDDAGGLYVGSPVRYRGVKVGKVASISLDPKPNGARVTL 85 (359)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccCCCceEEEEEecccccCCCCCceEEcCEEeEEEEEEEecCCCCceEEEE
Confidence 55899999999998887777777755432 1347899999999999999999999999999999999996 56788888
Q ss_pred EEecCccccCCCcEEEEEeCCcccceEEEEecCCCCCCCCCCCCCccccccCceecCCCeec---ccCCCCHHHHHHHHH
Q 024672 154 EVEDEKTVIPQNALVEVNQSGLLMETLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMK---GHQGVSLDELVGIVT 230 (264)
Q Consensus 154 ~i~~~~~~Ip~ds~a~I~~~~llG~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~---~~~~~sld~Ll~~l~ 230 (264)
+| +.+++||+|++|.|.+.|++|++||+|.|+.+ .+..+.+++.++ ++.+.++++++..+.
T Consensus 86 ~i-d~~~~Ip~~s~A~I~~~gL~G~~yIeL~~~~~---------------~~~~l~~~~~~~~~~t~~~~~~~~l~~~~~ 149 (359)
T COG1463 86 EI-DSDYPIPADSTASIRTTGLLGEKYIELTPGDA---------------GGPKLRLGATIPLERTQVPIDLEDLLGDLL 149 (359)
T ss_pred Ee-cCCcccCCCceeeeeeccccceeEEEeccCCC---------------CCCccCCCCCccccCCcCcccHHHHHHHHH
Confidence 88 47889999999999999999999999999842 112344444444 246788999998888
Q ss_pred HHHhhcCCCc
Q 024672 231 RLGREMEGIG 240 (264)
Q Consensus 231 ~l~~~l~~~~ 240 (264)
.+..+.+...
T Consensus 150 ~~~~~~~~~~ 159 (359)
T COG1463 150 LLLGGLDPDR 159 (359)
T ss_pred HHhccCCchh
Confidence 8888777653
No 4
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=99.77 E-value=5e-18 Score=127.86 Aligned_cols=76 Identities=30% Similarity=0.564 Sum_probs=69.7
Q ss_pred eEEEEEEeccCCCCCCCCceEECCeEEEEEEEEee--CCCeEEEEEEEecCcc--ccCCCcEEEEEeCCcccceEEEEec
Q 024672 110 KYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNP--SLKSIEAVVEVEDEKT--VIPQNALVEVNQSGLLMETLIDITP 185 (264)
Q Consensus 110 ~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l--~~~~v~v~v~i~~~~~--~Ip~ds~a~I~~~~llG~~~I~L~p 185 (264)
+|+++++|+++.||.+|++|+|+|++||+|++|++ +.+++.++++++ +++ .||+|+++.|.+.+++|++||+|.|
T Consensus 2 ~~~v~~~~~~~~GL~~gs~V~~~Gv~VG~V~~i~l~~~~~~v~v~~~i~-~~~~~~i~~~s~a~i~~~~llG~~~i~l~p 80 (81)
T PF02470_consen 2 GYTVTVYFDDAGGLSVGSPVRYRGVEVGKVTSIELDPDGNRVRVTLRID-PDYWHRIPDDSRASIRSSGLLGEKYIELIP 80 (81)
T ss_pred CEEEEEEECCcCCCCCcCEEEECCEEEEEEEEEEEcCCCCEEEEEEEEc-CCcceecCCCcEEEEEeCCchhheEEEEeC
Confidence 68899999999999999999999999999999965 456788888884 777 9999999999999999999999999
Q ss_pred C
Q 024672 186 R 186 (264)
Q Consensus 186 g 186 (264)
|
T Consensus 81 G 81 (81)
T PF02470_consen 81 G 81 (81)
T ss_pred C
Confidence 7
No 5
>PRK10807 paraquat-inducible protein B; Provisional
Probab=99.17 E-value=6.6e-10 Score=110.89 Aligned_cols=117 Identities=17% Similarity=0.282 Sum_probs=79.0
Q ss_pred EEEEec-cCCCCCCCCceEECCeEEEEEEEEeeCCC----------eEEEEEEEecCcc----------------ccCCC
Q 024672 113 AVFEFS-QACGICTGTPVRIRGVTVGNVIRVNPSLK----------SIEAVVEVEDEKT----------------VIPQN 165 (264)
Q Consensus 113 v~~~F~-~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~----------~v~v~v~i~~~~~----------------~Ip~d 165 (264)
+.+.|+ ++.||.+|+||+|+||+||+|++|.++.+ .+.|.++|+.+.+ .|.+|
T Consensus 289 ~~~~~~~sv~GL~~GapV~~rGv~VG~V~~i~l~~~~~~~~~~~~~~i~V~i~I~p~r~~~~~~~~~~~~~~l~~~v~~G 368 (547)
T PRK10807 289 YLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPGMRQRFNDDYRIPVLIRIEPERLKMQLGENFDVEQHLKELLKRG 368 (547)
T ss_pred EEEEecCCcCCCCCCCcEEECCceEEEEEEEEeecccccccccCCceEEEEEEEEhhhhcccccccccHHHHHHHHHhCC
Confidence 344576 49999999999999999999999998522 4567777752111 26789
Q ss_pred cEEEEEeCCcc-cceEEEEecCCCCCCCCCCCCCccccccCceecCCCeecccCCCCHHHHHHHHHHHHhhcCCCc
Q 024672 166 ALVEVNQSGLL-METLIDITPRDPIPTPTVGPLDPECVREGLIMCDRQKMKGHQGVSLDELVGIVTRLGREMEGIG 240 (264)
Q Consensus 166 s~a~I~~~~ll-G~~~I~L~pg~p~~~~~~~p~~~~~~~~g~~L~dg~~I~~~~~~sld~Ll~~l~~l~~~l~~~~ 240 (264)
.+|++++.++| |..||+|.-.. .+++...+.+ ...--.|++ .+..+++|.+++..++++++...
T Consensus 369 LRA~L~s~~lLTG~lyV~Ld~~p-~a~~~~~~~~---------~~~~pvIPt-~ps~l~~l~~~~~~il~kin~lp 433 (547)
T PRK10807 369 LRASLKTGNLLTGALYVDLDFYP-NAKPWTGPRE---------FNGYPIIPT-VSGGLAQIQQKLMEALDKINNLP 433 (547)
T ss_pred cEEEEccCCcccccEEEEEecCC-CCCcccCccC---------CCCCceeec-CCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999965 99999996331 1111100000 001133443 34468899999888888888754
No 6
>PRK10807 paraquat-inducible protein B; Provisional
Probab=98.91 E-value=1.5e-08 Score=101.19 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCC-CceEECCeEEEEEEEEeeCCC--eEEEEEEEe
Q 024672 80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTG-TPVRIRGVTVGNVIRVNPSLK--SIEAVVEVE 156 (264)
Q Consensus 80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~G-s~V~~~GV~VG~V~~I~l~~~--~v~v~v~i~ 156 (264)
.|+++-++++++..++++.. +.. ++.+|++.|+++.||.+| ++|+|+||+||+|++|+++++ +|.+++.|+
T Consensus 19 ~iWlvP~~a~~i~~~l~~~~----~~~--~G~~itl~~~~a~gl~~GkT~I~yrgv~VG~V~~v~l~~d~~~V~~~~~i~ 92 (547)
T PRK10807 19 PVWIFPIVTALIGAWILFYH----FSH--QGPEVTLITTNAEGIEAGKTTIKSRSVDVGVVESVTLSDDLTHVEIKARLN 92 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHc--CCeEEEEEECCCCCcCcCCceeEECCceEEEEEEEEECCCCCeEEEEEEEC
Confidence 67788777777665554422 112 456788889999999999 999999999999999999864 578888885
Q ss_pred cCcc--ccCCCcE-----EEEEeCC------cccceEEEEecCCC
Q 024672 157 DEKT--VIPQNAL-----VEVNQSG------LLMETLIDITPRDP 188 (264)
Q Consensus 157 ~~~~--~Ip~ds~-----a~I~~~~------llG~~~I~L~pg~p 188 (264)
..+ .+.+||+ ++|...| |+...||++.||.+
T Consensus 93 -~~~~~ll~~~trFWvv~p~is~~GvsgL~tLlsG~yi~~~pG~~ 136 (547)
T PRK10807 93 -SGMEKLLHKDSVFWVVKPQIGREGISGLGTLLSGAYIELQPGSK 136 (547)
T ss_pred -ccHHHhhcCCCEEEEeeeeEcCCCCcChHHhhccceEEecCCCC
Confidence 444 6899999 4555555 78788999999853
No 7
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=98.82 E-value=3.2e-08 Score=97.46 Aligned_cols=102 Identities=27% Similarity=0.361 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCceEEEEEEeccCCCCCCC-CceEECCeEEEEEEEEeeCC--CeEEEEEEEe
Q 024672 80 GVGLFLVSGTVLLALSLAWLRGFQLRSKFRKYLAVFEFSQACGICTG-TPVRIRGVTVGNVIRVNPSL--KSIEAVVEVE 156 (264)
Q Consensus 80 ~VGlfvl~~lv~l~~~~~~l~g~~~~~~~~~y~v~~~F~~a~GL~~G-s~V~~~GV~VG~V~~I~l~~--~~v~v~v~i~ 156 (264)
-++++-++++++.+++++.. ++ . ++-.|++.|.++.||.+| ++|||.||+||.|++|++++ ++|+|+++|.
T Consensus 22 piWllPivAl~igawL~~~~--~~--~--~G~~Itl~f~saeGIeaGKT~Iry~gvdVG~V~~v~LsdDl~~V~V~a~i~ 95 (553)
T COG3008 22 PIWLLPIVALLIGAWLLFQH--VQ--D--RGPEITLTFESAEGIEAGKTPIRYQGVDVGVVTDIKLSDDLKGVEVTAQIN 95 (553)
T ss_pred chHHHHHHHHHHHHHHHHHH--HH--h--cCCeEEEEecCccccccCcceEEecceeeeEEEEEEeccCccceEEEEEeC
Confidence 34566666666554443322 11 2 344677789999999999 89999999999999999976 5889999997
Q ss_pred -cCccccCCCcEEEEEe-----------CCcccceEEEEecCC
Q 024672 157 -DEKTVIPQNALVEVNQ-----------SGLLMETLIDITPRD 187 (264)
Q Consensus 157 -~~~~~Ip~ds~a~I~~-----------~~llG~~~I~L~pg~ 187 (264)
+-+-.+.+|+++=+-. .+|++..||.+.||.
T Consensus 96 ~da~~~L~~dT~FWvVkPr~slaGiSGLdtLlSG~YI~lqPG~ 138 (553)
T COG3008 96 SDAKDLLREDTRFWVVKPRASLAGISGLDTLLSGNYIGLQPGK 138 (553)
T ss_pred hhHHHHhhcCcEEEEEecccccccccccchhhcCceEEecCCC
Confidence 3334788888775443 236789999999994
No 8
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=96.41 E-value=0.0089 Score=59.65 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=45.9
Q ss_pred ceEEEEEEeccCCCCCCCCceEECCeEEEEEEEEeeCCC--eEEEEEEEecCcc--ccCCCcEE
Q 024672 109 RKYLAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPSLK--SIEAVVEVEDEKT--VIPQNALV 168 (264)
Q Consensus 109 ~~y~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~--~v~v~v~i~~~~~--~Ip~ds~a 168 (264)
...+++..-++.+.|.+|+||.|++++||+|.+-.++++ +|.+.+-|+ ..| .|.++|++
T Consensus 160 ~gL~i~L~a~dlGsL~~GspVyfr~i~VGqV~sy~~d~d~~~V~i~vfI~-~py~~lV~~~sRF 222 (553)
T COG3008 160 GGLRIHLDAKDLGSLNVGSPVYFRKIPVGQVESYQFDPDKQGVTIQVFIE-APYDRLVKKDSRF 222 (553)
T ss_pred CCeEEEEecCccCCcCCCCeeEEeceeeeeEEEEEEcCCCCeEEEEEEec-ChhhhhhccCcee
Confidence 345666666789999999999999999999999998764 677777775 333 56666665
No 9
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=84.30 E-value=5.5 Score=33.62 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=19.2
Q ss_pred CCCCceEECCeEE-EEEEEEeeCCCeEEEEEEEec
Q 024672 124 CTGTPVRIRGVTV-GNVIRVNPSLKSIEAVVEVED 157 (264)
Q Consensus 124 ~~Gs~V~~~GV~V-G~V~~I~l~~~~v~v~v~i~~ 157 (264)
..|..||+.|.-+ |.|. -+ +.-.+++.|.|
T Consensus 49 ~~g~~vrvgG~V~~gSi~---~~-~~~~~~F~ltD 79 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQ---RG-DGLTVRFVVTD 79 (148)
T ss_pred cCCCeEEEeEEEecCcEE---eC-CCCEEEEEEEe
Confidence 5788999998764 5444 32 33356777754
No 10
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=82.14 E-value=12 Score=31.87 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=29.5
Q ss_pred CCCCCceEECCe-EEEEEEEEeeCCCeEEEEEEEecCccccCCCcEEEEEeCCcccc
Q 024672 123 ICTGTPVRIRGV-TVGNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLME 178 (264)
Q Consensus 123 L~~Gs~V~~~GV-~VG~V~~I~l~~~~v~v~v~i~~~~~~Ip~ds~a~I~~~~llG~ 178 (264)
-..+..+|+.|. .-|.|.. ++++..+.+.+.|. ...+.|.-.|++=|
T Consensus 48 ~~~~~~~RlGG~V~~GSv~r---~~~~~~v~F~vtD~------~~~v~V~Y~GilPD 95 (155)
T PRK13159 48 AAGYQQFRLGGMVKAGSIQR---AADSLKVSFTVIDK------NAATQVEYTGILPD 95 (155)
T ss_pred cccCCeEEEccEEecCcEEE---cCCCcEEEEEEEcC------CcEEEEEEccCCCc
Confidence 345688999987 5577655 55666788888743 34555555555433
No 11
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=82.07 E-value=14 Score=31.71 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=30.7
Q ss_pred CCCCCceEECCeEE-EEEEEEeeCCCeEEEEEEEecCccccCCCcEEEEEeCCcccce
Q 024672 123 ICTGTPVRIRGVTV-GNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLMET 179 (264)
Q Consensus 123 L~~Gs~V~~~GV~V-G~V~~I~l~~~~v~v~v~i~~~~~~Ip~ds~a~I~~~~llG~~ 179 (264)
...|..+|+.|.-+ |.|. -+++...+.+.+.|. ...+.|.-.|++=+.
T Consensus 54 ~~~g~~iRvgG~V~~GSi~---r~~~~l~v~F~vtD~------~~~v~V~Y~GilPDl 102 (160)
T PRK13165 54 PEVGQRLRVGGMVMPGSVQ---RDPNSLKVSFTLYDA------GGSVTVTYEGILPDL 102 (160)
T ss_pred cCCCCEEEEeeEEeCCcEE---ECCCCeEEEEEEEcC------CeEEEEEEcccCCcc
Confidence 35789999998654 5554 356666788888743 334566555555443
No 12
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=79.91 E-value=0.9 Score=36.73 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=26.4
Q ss_pred CCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEE
Q 024672 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEV 155 (264)
Q Consensus 120 a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i 155 (264)
.+.|++|+.|.-.|=-+|+|.+|+-+.+. +.+++
T Consensus 34 ~~sLk~GD~VvT~GGi~G~V~~I~~~~~~--v~le~ 67 (113)
T PRK06531 34 LNAIQKGDEVVTIGGLYGTVDEVDTEAKT--IVLDV 67 (113)
T ss_pred HHhcCCCCEEEECCCcEEEEEEEecCCCE--EEEEE
Confidence 67999999999888889999999865443 44444
No 13
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=68.40 E-value=2.5 Score=34.71 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=20.9
Q ss_pred CCCCCCceEECCeEE-EEEEEEeeCCCeEEEEEEEecC
Q 024672 122 GICTGTPVRIRGVTV-GNVIRVNPSLKSIEAVVEVEDE 158 (264)
Q Consensus 122 GL~~Gs~V~~~GV~V-G~V~~I~l~~~~v~v~v~i~~~ 158 (264)
.-..|..||+.|.-+ | +|..+++...+++.|.|.
T Consensus 46 ~~~~~~~vrv~G~V~~g---Sv~~~~~~~~~~F~i~D~ 80 (131)
T PF03100_consen 46 PQKVGRKVRVGGLVVEG---SVEYDPDGNTLTFTITDG 80 (131)
T ss_dssp ST-TTSEEEEEEEEECT---TEEE-TTSSEEEEEEE-S
T ss_pred cccCCceEEEeeEEccC---CEEEcCCCCEEEEEEEEC
Confidence 335789999987654 3 555554555677888643
No 14
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=67.84 E-value=52 Score=28.18 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=29.1
Q ss_pred CCCCceEECCeEE-EEEEEEeeCCCeEEEEEEEecCccccCCCcEEEEEeCCcccc
Q 024672 124 CTGTPVRIRGVTV-GNVIRVNPSLKSIEAVVEVEDEKTVIPQNALVEVNQSGLLME 178 (264)
Q Consensus 124 ~~Gs~V~~~GV~V-G~V~~I~l~~~~v~v~v~i~~~~~~Ip~ds~a~I~~~~llG~ 178 (264)
..|..+|+.|.-+ |.|. -++++..+.+.+.|. ...+.|.-.|++=+
T Consensus 55 ~~g~~iRvgG~V~~GSv~---r~~~~~~v~F~vtD~------~~~v~V~Y~GilPD 101 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVR---RDPDSLKVNFSLYDA------EGSVTVSYEGILPD 101 (159)
T ss_pred CCCCEEEEeeEEeCCcEE---ECCCCcEEEEEEEcC------CcEEEEEEeccCCc
Confidence 4588999998654 5554 345566788888743 23566665555543
No 15
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=67.00 E-value=13 Score=28.33 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCCCCCceEECCeEEEEEEEEeeCCCeE-------EEEEEEe
Q 024672 122 GICTGTPVRIRGVTVGNVIRVNPSLKSI-------EAVVEVE 156 (264)
Q Consensus 122 GL~~Gs~V~~~GV~VG~V~~I~l~~~~v-------~v~v~i~ 156 (264)
-|++|.++ .|..+|+|.+|+.+.+.+ +|-+.|+
T Consensus 29 ~ik~G~~l--~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ie 68 (81)
T PF14578_consen 29 IIKPGYPL--DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIE 68 (81)
T ss_dssp EEETT-EE--CSSCEEEEEEEEETTEEESEEETT-EEEEEEE
T ss_pred EEeCCCcc--CCEEEEEEEEeEECCcCccccCCCCEEEEEEe
Confidence 47899999 999999999999875432 4555564
No 16
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=65.74 E-value=51 Score=28.03 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=17.8
Q ss_pred CCCCceEECCe-EEEEEEEEeeCCCeEEEEEEEe
Q 024672 124 CTGTPVRIRGV-TVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 124 ~~Gs~V~~~GV-~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
..|..+|+.|+ .-|.|.+ +++.-.+.+.+.
T Consensus 49 ~~G~rlR~GGlV~~GSv~R---~~~~~~v~F~vt 79 (153)
T COG2332 49 ETGQRLRLGGLVEAGSVQR---DPGSLKVSFVVT 79 (153)
T ss_pred cCCcEEEEeeeEeeceEEe---cCCCcEEEEEEe
Confidence 44899999985 3344443 344445555555
No 17
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=61.43 E-value=8.3 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 024672 77 WEGGVGLFLVSGTVLLALSLAWLR 100 (264)
Q Consensus 77 ~e~~VGlfvl~~lv~l~~~~~~l~ 100 (264)
+-..+|+++++.+++++++.-++.
T Consensus 16 k~a~~gl~il~~~vl~ai~~p~~~ 39 (56)
T PF12911_consen 16 KLAVIGLIILLILVLLAIFAPFIS 39 (56)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcC
Confidence 555777777777776665544443
No 18
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=59.19 E-value=58 Score=26.83 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=41.0
Q ss_pred EeccCCCCCCCCceEECCeEEEEEEE--EeeCCCeEEEEEEEec---CccccCCCcEEEEE
Q 024672 116 EFSQACGICTGTPVRIRGVTVGNVIR--VNPSLKSIEAVVEVED---EKTVIPQNALVEVN 171 (264)
Q Consensus 116 ~F~~a~GL~~Gs~V~~~GV~VG~V~~--I~l~~~~v~v~v~i~~---~~~~Ip~ds~a~I~ 171 (264)
...++..+.-+++|.+.|--|-++.+ ..+.++.-.+.++|++ ....+..+.+++|.
T Consensus 47 tV~~a~~~~Ddt~V~L~G~Iv~~l~~d~Y~F~D~TG~I~VeId~~~w~G~~v~p~d~V~I~ 107 (126)
T TIGR00156 47 TVDFAKSMHDGASVTLRGNIISHIGDDRYVFRDKSGEINVVIPAAVWNGREVQPKDMVNIS 107 (126)
T ss_pred eHHHHhhCCCCCEEEEEEEEEEEeCCceEEEECCCCCEEEEECHHHcCCCcCCCCCEEEEE
Confidence 45667788999999999998888853 3455655578888864 23367788888874
No 19
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=58.15 E-value=12 Score=30.04 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=26.5
Q ss_pred CCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEe
Q 024672 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 120 a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
.+.|++|+.|.-.|=-+|+|.+|+ ++ .+.+++.
T Consensus 36 ~~~Lk~GD~VvT~gGi~G~V~~I~--d~--~v~leia 68 (109)
T PRK05886 36 HESLQPGDRVHTTSGLQATIVGIT--DD--TVDLEIA 68 (109)
T ss_pred HHhcCCCCEEEECCCeEEEEEEEe--CC--EEEEEEC
Confidence 679999999999988899999986 34 3566663
No 20
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=53.06 E-value=3.4 Score=32.50 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.1
Q ss_pred cCCCCCCCCceEECCeEEEEEEEEeeC
Q 024672 119 QACGICTGTPVRIRGVTVGNVIRVNPS 145 (264)
Q Consensus 119 ~a~GL~~Gs~V~~~GV~VG~V~~I~l~ 145 (264)
--+.|.+|+.|.-.|=-+|+|++|.-+
T Consensus 40 ml~sL~kGD~VvT~gGi~G~V~~v~d~ 66 (97)
T COG1862 40 LLNSLKKGDEVVTIGGIVGTVTKVGDD 66 (97)
T ss_pred HHHhccCCCEEEEcCCeEEEEEEEecC
Confidence 367899999998888889999999754
No 21
>PF13437 HlyD_3: HlyD family secretion protein
Probab=47.92 E-value=1.1e+02 Score=22.90 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=35.8
Q ss_pred ceEEEEEEecc--CCCCC-CCCceEEC---C---eEEEEEEEEeeC----CCeEEEEEEEec
Q 024672 109 RKYLAVFEFSQ--ACGIC-TGTPVRIR---G---VTVGNVIRVNPS----LKSIEAVVEVED 157 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~-~Gs~V~~~---G---V~VG~V~~I~l~----~~~v~v~v~i~~ 157 (264)
...++.++++. ...|. +|.+|++. | .--|+|++|... .+.+.+++++++
T Consensus 34 ~~~~v~~~v~~~~~~~i~~~g~~v~v~~~~~~~~~~~g~V~~I~~~~~~~~~~~~v~~~i~~ 95 (105)
T PF13437_consen 34 DDLWVEAYVPEKDIARIKDPGQKVTVRLDPGPEKTIEGKVSSISPSPDPQGGTYRVEISIDN 95 (105)
T ss_pred ceEEEEEEEChHhhcceEeCCCEEEEEECCCCCcEEEEEEEEEeCcccCCCcEEEEEEEECC
Confidence 45667777764 77897 99998877 3 558999999963 246777777763
No 22
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=46.89 E-value=17 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=25.4
Q ss_pred CCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEe
Q 024672 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 120 a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
...|++|+.|.-.|=-+|+|.+|+ ++ .+.+++.
T Consensus 50 ~~~Lk~Gd~VvT~gGi~G~Vv~i~--~~--~v~lei~ 82 (106)
T PRK05585 50 LSSLAKGDEVVTNGGIIGKVTKVS--ED--FVIIELN 82 (106)
T ss_pred HHhcCCCCEEEECCCeEEEEEEEe--CC--EEEEEEC
Confidence 679999999977777799999985 34 4555653
No 23
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=46.23 E-value=96 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=26.5
Q ss_pred ceEEEEEEecc--CCCCCCCCceEEC------CeEEEEEEEEee
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRIR------GVTVGNVIRVNP 144 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~~------GV~VG~V~~I~l 144 (264)
+.+++.++++. ...+.+|.+|.+. +.-=|+|..|..
T Consensus 243 ~~l~v~~~v~e~~~~~v~~Gq~v~i~~~~~~~~~~~G~V~~Is~ 286 (346)
T PRK10476 243 DHWYAIANFRETDLKNIRVGDCATVYSMIDRGRPFEGKVDSIGW 286 (346)
T ss_pred CCEEEEEEEcHHHHhhCCCCCEEEEEEecCCCceEEEEEEEECC
Confidence 46777777764 6679999998873 344588998875
No 24
>PRK10053 hypothetical protein; Provisional
Probab=44.47 E-value=1.8e+02 Score=24.03 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=40.5
Q ss_pred EeccCCCCCCCCceEECCeEEEEEE--EEeeCCCeEEEEEEEecCc---cccCCCcEEEEE
Q 024672 116 EFSQACGICTGTPVRIRGVTVGNVI--RVNPSLKSIEAVVEVEDEK---TVIPQNALVEVN 171 (264)
Q Consensus 116 ~F~~a~GL~~Gs~V~~~GV~VG~V~--~I~l~~~~v~v~v~i~~~~---~~Ip~ds~a~I~ 171 (264)
...++....-+++|.+.|--|-++. ...+.++.-.+.++|+++. ..|..+.+++|.
T Consensus 51 tV~~a~~~~Dd~~V~L~G~Iv~~lg~d~Y~F~D~tG~I~VeID~~~w~G~~v~p~~kV~I~ 111 (130)
T PRK10053 51 TVEQAKTMHDGATVSLRGNLIDHKGDDRYVFRDKSGEINVIIPAAVFDGREVQPDQMININ 111 (130)
T ss_pred EHHHhhcCcCCCeEEEEEEEEEEeCCceEEEECCCCcEEEEeCHHHcCCCcCCCCCEEEEE
Confidence 3456777899999999999888874 3345565557888996332 267788888774
No 25
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=44.30 E-value=5.5 Score=30.09 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=1.4
Q ss_pred CCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEe
Q 024672 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 120 a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
.+.|++|+.|...|=-.|+|.++ +++ .+.+++.
T Consensus 34 ~~~Lk~Gd~VvT~gGi~G~V~~i--~~~--~v~lei~ 66 (82)
T PF02699_consen 34 LASLKPGDEVVTIGGIYGTVVEI--DDD--TVVLEIA 66 (82)
T ss_dssp GG-----------------------------------
T ss_pred HHcCCCCCEEEECCcEEEEEEEE--eCC--EEEEEEC
Confidence 67999999999888789999999 444 3555554
No 26
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=43.62 E-value=28 Score=26.45 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=25.6
Q ss_pred CCCCCCCCceEECCeEEEEEEEEeeCCCeEEEEEEEe
Q 024672 120 ACGICTGTPVRIRGVTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 120 a~GL~~Gs~V~~~GV~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
-+.|++|+.|...|=-.|+|.+|+ ++. +.+++.
T Consensus 35 ~~~L~~Gd~VvT~gGi~G~V~~i~--d~~--v~vei~ 67 (84)
T TIGR00739 35 IESLKKGDKVLTIGGIIGTVTKIA--ENT--IVIELN 67 (84)
T ss_pred HHhCCCCCEEEECCCeEEEEEEEe--CCE--EEEEEC
Confidence 668999999999988899999886 343 455553
No 27
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=42.04 E-value=1.8e+02 Score=25.59 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=20.1
Q ss_pred eccCCCCCCCCceEECCeEEEEEEEEeeCCC
Q 024672 117 FSQACGICTGTPVRIRGVTVGNVIRVNPSLK 147 (264)
Q Consensus 117 F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~~ 147 (264)
..+..+++.|++||+.|. |.++.-..+
T Consensus 44 ~~~~~~~~~gq~aR~GGk----Vvnv~n~~~ 70 (191)
T COG3065 44 VMSQPQLYVGQQARFGGK----VVNVINQKG 70 (191)
T ss_pred eccCCcccccceeeeCcE----EEEEecCCC
Confidence 457889999999999975 555554444
No 28
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=40.35 E-value=1.5e+02 Score=21.99 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=38.1
Q ss_pred EEEEEeccCCCCCCCCceEE-CCeEEEEEEEEeeCC--CeEEEEEEEecCccccCCCcEEEEE
Q 024672 112 LAVFEFSQACGICTGTPVRI-RGVTVGNVIRVNPSL--KSIEAVVEVEDEKTVIPQNALVEVN 171 (264)
Q Consensus 112 ~v~~~F~~a~GL~~Gs~V~~-~GV~VG~V~~I~l~~--~~v~v~v~i~~~~~~Ip~ds~a~I~ 171 (264)
.+.+.++...-+..|++|.. +|-.||.|++-..++ ++..+..-|+ .+ ....|..+.|.
T Consensus 22 lv~l~~~~~~~~~~g~~v~~~~g~~vG~vTS~~~sp~~~~~Iala~v~-~~-~~~~g~~l~v~ 82 (95)
T PF08669_consen 22 LVGLTLDGDAPPRGGEPVYDEDGKPVGRVTSGAYSPTLGKNIALAYVD-RE-YAEPGTELEVE 82 (95)
T ss_dssp EEEEEESSSS--STTCEEEETTTEEEEEEEEEEEETTTTEEEEEEEEE-GG-GGSTTSEEEEE
T ss_pred EEEEEECCccCCCCCCEEEECCCcEEeEEEEEeECCCCCceEEEEEEC-HH-HcCCCCEEEEE
Confidence 34445565667899999999 999999999998654 4544555553 22 34446666665
No 29
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=39.08 E-value=1.9e+02 Score=26.78 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=26.5
Q ss_pred EEEEEeccCCCCCCCCceEECCeEEEEEEEEeeC
Q 024672 112 LAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPS 145 (264)
Q Consensus 112 ~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~ 145 (264)
++++.--.-.|+.+|.+|...|--||+|..|.-.
T Consensus 133 ~ivId~Gs~~GV~~~~~Vi~~~GLVG~V~~V~~~ 166 (284)
T COG1792 133 TIVIDKGSNDGIKKGMPVVAEGGLVGKVVEVSKN 166 (284)
T ss_pred EEEEecCcccCccCCCeEEECCceEEEEEEEcCc
Confidence 3443334456999999999998899999999854
No 30
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=38.30 E-value=1.6e+02 Score=26.97 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=26.1
Q ss_pred ceEEEEEEecc--CCCCCCCCceEEC------C-eEEEEEEEEeeC
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRIR------G-VTVGNVIRVNPS 145 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~~------G-V~VG~V~~I~l~ 145 (264)
+.+++.+.++. +..|.+|.+|++. + .--|+|.+|...
T Consensus 239 ~~~~v~~~v~e~~~~~i~~G~~v~v~~~~~~~~~~~~G~V~~Is~~ 284 (334)
T TIGR00998 239 EQMYVEANFKETQLKNVRIGQPVTIRSDLYGSDVVFEGKVTGISMG 284 (334)
T ss_pred CcEEEEEecCHHHHhhCCCCCEEEEEEecCCCCCEEEEEEEEECCC
Confidence 45677777764 6678999888875 2 235888888763
No 31
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=36.95 E-value=53 Score=20.96 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCc
Q 024672 80 GVGLFLVSGTVLLALSLAWLRGF 102 (264)
Q Consensus 80 ~VGlfvl~~lv~l~~~~~~l~g~ 102 (264)
-+|.+.+++++.+.++++|++-+
T Consensus 5 p~Gal~vv~iLt~~ILvFWfgvf 27 (34)
T PF08113_consen 5 PKGALGVVMILTAFILVFWFGVF 27 (34)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeHHHHHHHHHHHHHHHH
Confidence 46777777777777777777643
No 32
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=36.55 E-value=1.4e+02 Score=27.95 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=29.9
Q ss_pred ceEEEEEEecc--CCCCCCCCceEEC--Ce-------EEEEEEEEeeCC----C----eEEEEEEEe
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRIR--GV-------TVGNVIRVNPSL----K----SIEAVVEVE 156 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~~--GV-------~VG~V~~I~l~~----~----~v~v~v~i~ 156 (264)
+.+.+.++++. ...+..|.+|++. +. --|+|..|..+. + .+.|++.++
T Consensus 308 ~~~~v~~~v~~~~~~~i~~G~~v~v~~~~~~~~~~~~~~g~V~~i~~~~~~~~~~~~~~~~v~i~l~ 374 (423)
T TIGR01843 308 DPLEIEAKLSPKDIGFVHVGQPAEIKFSAFPYRRYGILNGKVKSISPDTFTDERGGGPYYRVRISID 374 (423)
T ss_pred CcEEEEEEEChhhhhhhCCCCceEEEEecCCCcccCCccEEEEEECCCcccCccCCcceEEEEEEEC
Confidence 35667777754 6678888887753 32 258888887531 1 255666664
No 33
>PF04085 MreC: rod shape-determining protein MreC; InterPro: IPR007221 MreC (murein formation C) is involved in the rod shape determination in Escherichia coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.; GO: 0008360 regulation of cell shape; PDB: 2J5U_B 2QF4_B 2QF5_A.
Probab=35.73 E-value=60 Score=27.00 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=23.5
Q ss_pred EEEEEeccCCCCCCCCceEECCeEEEEEEEEeeC
Q 024672 112 LAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPS 145 (264)
Q Consensus 112 ~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~ 145 (264)
++++..-...|+++|++|.-.+--||+|.++...
T Consensus 13 ~i~Id~G~~dGi~~g~~Vv~~~glVG~V~~V~~~ 46 (152)
T PF04085_consen 13 SITIDKGSNDGIKPGMPVVSGGGLVGRVTEVGPN 46 (152)
T ss_dssp EEEES--GGGT--TT-EEEETTEEEEEEEEE-SS
T ss_pred EEEEeCchhhcCCCCCEEEeCCCcEEEEEEECCC
Confidence 4555667788999999999999999999988753
No 34
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=34.78 E-value=1.3e+02 Score=25.76 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=16.2
Q ss_pred hhhhccccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 024672 58 IWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLAWLR 100 (264)
Q Consensus 58 ~~~~~~~p~~~~~m~rrs~~e~~VGlfvl~~lv~l~~~~~~l~ 100 (264)
+|-+.-....|..|.+|. ++|++++.+++++++.++
T Consensus 80 l~~~~s~~~~d~~~l~R~-------~~Vl~g~s~l~i~yfvir 115 (163)
T PF06679_consen 80 LASRPSPSSPDSPMLKRA-------LYVLVGLSALAILYFVIR 115 (163)
T ss_pred cccccCCCcCCccchhhh-------HHHHHHHHHHHHHHHHHH
Confidence 344444444555555444 444444444443333333
No 35
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.82 E-value=73 Score=29.09 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=20.0
Q ss_pred cccchhhhhhccccCccccccccch-hhHHHHHHHHHHHHHHHHHHH
Q 024672 52 MDVPRNIWRRTLRPLSDFGFGRRSV-WEGGVGLFLVSGTVLLALSLA 97 (264)
Q Consensus 52 ~~~~~~~~~~~~~p~~~~~m~rrs~-~e~~VGlfvl~~lv~l~~~~~ 97 (264)
++.+|.+||+.- |-.+|.. ...+.++++++|+++++.+++
T Consensus 229 ~~w~~rl~R~~~------g~s~rP~~~~~ra~fli~lgvLafi~~i~ 269 (299)
T KOG3970|consen 229 MDWMRRLWRAKH------GGSGRPQEAKKRALFLIFLGVLAFITIIM 269 (299)
T ss_pred HHHHHHHHHHhh------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667787763 2222331 233445555666665544333
No 36
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.66 E-value=1.2e+02 Score=27.46 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=24.5
Q ss_pred EeccCCCCCCCCceEEC--------CeEEEEEEEEeeCCCe
Q 024672 116 EFSQACGICTGTPVRIR--------GVTVGNVIRVNPSLKS 148 (264)
Q Consensus 116 ~F~~a~GL~~Gs~V~~~--------GV~VG~V~~I~l~~~~ 148 (264)
+++.-..+++|+.|.=. |++||+|++|+.+.+.
T Consensus 208 ~i~~~~~i~~GD~VvTSGl~g~fP~Gi~VG~V~~v~~~~~~ 248 (276)
T PRK13922 208 FIPRSADIKVGDLVVTSGLGGIFPAGLPVGKVTSVERDDYG 248 (276)
T ss_pred ecCCCCCCCCCCEEEECCCCCcCCCCCEEEEEEEEEeCCCC
Confidence 34555678888776544 6899999999887654
No 37
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.06 E-value=43 Score=30.11 Aligned_cols=27 Identities=19% Similarity=0.560 Sum_probs=23.3
Q ss_pred eccCCCCCCCCceEECCeEEEEEEEEe
Q 024672 117 FSQACGICTGTPVRIRGVTVGNVIRVN 143 (264)
Q Consensus 117 F~~a~GL~~Gs~V~~~GV~VG~V~~I~ 143 (264)
+....|+.+|..+.++|+-||+.++=+
T Consensus 93 ~R~i~Gv~pGE~I~VNGiVIG~A~s~~ 119 (215)
T PF09890_consen 93 FRKISGVSPGENIFVNGIVIGRATSSE 119 (215)
T ss_pred EEEEeccCCCCCEEEeeEEEEEEcCCe
Confidence 456889999999999999999987544
No 38
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=30.05 E-value=2.9e+02 Score=25.48 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=37.3
Q ss_pred ceEEEEEEecc--CCCCCCCCceEE--CC----eEEEEEEEEeeCCC---------------eEEEEEEEecCccccCCC
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRI--RG----VTVGNVIRVNPSLK---------------SIEAVVEVEDEKTVIPQN 165 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~--~G----V~VG~V~~I~l~~~---------------~v~v~v~i~~~~~~Ip~d 165 (264)
..+++.+.++. ..-|.+|.+|++ .+ .-=|+|++|....+ .+++++.+++.+-.+..|
T Consensus 238 ~~~~v~~~V~e~~~~~i~~Gq~v~v~~~~~~~~~~~g~V~~Is~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~l~pG 317 (331)
T PRK03598 238 RPVWVRAYVDERNLGQAQPGRKVLLYTDGRPDKPYHGQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQG 317 (331)
T ss_pred CceEEEEEECHHHHhhCCCCCEEEEEEcCCCCcEEEEEEEEEcCccccCCccccCcccceeEEEEEEEEecCcccccCCC
Confidence 45667777764 667899988776 33 33688888885321 134555554333455556
Q ss_pred cEEEEE
Q 024672 166 ALVEVN 171 (264)
Q Consensus 166 s~a~I~ 171 (264)
..+.+.
T Consensus 318 m~~~v~ 323 (331)
T PRK03598 318 MPVTVR 323 (331)
T ss_pred CeEEEE
Confidence 555543
No 39
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=28.81 E-value=3e+02 Score=26.53 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=15.8
Q ss_pred EEEEEEEeeCCC-eE---EEEEEEecCcc
Q 024672 136 VGNVIRVNPSLK-SI---EAVVEVEDEKT 160 (264)
Q Consensus 136 VG~V~~I~l~~~-~v---~v~v~i~~~~~ 160 (264)
-|.|.+|..+++ .| .+.++||+.+|
T Consensus 61 sG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y 89 (352)
T COG1566 61 SGRVTEVNVKDNQLVKKGDVLFRIDPRDY 89 (352)
T ss_pred ceEEEEEEecCCCEecCCCeEEEECcHHH
Confidence 377888887653 22 46777765555
No 40
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=27.52 E-value=3.8e+02 Score=24.73 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=24.5
Q ss_pred ceEEEEEEecc--CCCCCCCCceEEC-----CeEEEEEEEEee
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRIR-----GVTVGNVIRVNP 144 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~~-----GV~VG~V~~I~l 144 (264)
+..++.+.++. ...+.+|.+|++. ..--|+|..|..
T Consensus 189 ~~l~v~~~V~e~~i~~v~~G~~v~v~~~~~~~~~~G~V~~I~~ 231 (310)
T PRK10559 189 NSFYVLAYMEETKLEGVRPGYRAEITPLGSNKVLKGTVDSVAA 231 (310)
T ss_pred CCEEEEEEEChHHhhhCCCCCEEEEEEeCCCcEEEEEEEEECc
Confidence 45566666654 6679999988774 234678888863
No 41
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=27.44 E-value=4.5e+02 Score=23.51 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=39.7
Q ss_pred ceEEEEEEec--cCCCCCCCCc--eEEC----C-eEEEEEEEEeeC-CCeEEEEEEEecCccccCCCcEEEEE
Q 024672 109 RKYLAVFEFS--QACGICTGTP--VRIR----G-VTVGNVIRVNPS-LKSIEAVVEVEDEKTVIPQNALVEVN 171 (264)
Q Consensus 109 ~~y~v~~~F~--~a~GL~~Gs~--V~~~----G-V~VG~V~~I~l~-~~~v~v~v~i~~~~~~Ip~ds~a~I~ 171 (264)
..+++.+.++ ++..+.+|.+ |++. + .--|+|..|... .+...+.+.+++..-.+..|..+.+.
T Consensus 194 ~~~~v~~~v~e~~~~~i~~g~~~~v~~~~~~~~~~~~g~v~~i~~~~~~~~~v~~~~~~~~~~l~~g~~v~v~ 266 (328)
T PF12700_consen 194 SNLYVEAYVPESDASKIKVGQKVEVTIDAPDNGKSFTGKVSSISPSASRTFKVRVSLDNPNGNLRPGMFVEVS 266 (328)
T ss_dssp SEEEEEEEEECCGTTTHTTTGEEEEEETTSS-SSEEEEEEEEEESSETTEEEEEEEEE-SSS-S-TT-EEEEE
T ss_pred CcceeeeccCHHHHHhccCCcEEEEEEEeecCCCceeeEEeecCCccceeeEEEEEeccccchhhhcccccce
Confidence 5677777765 4779999999 5555 3 445999999876 45557777776434455556555443
No 42
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=26.65 E-value=2.7e+02 Score=26.72 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred ceEEEEEEecc--CCCCCCCCceEE-------CCeEEEEEEEEeeC--------------------CCeEEEEEEEecC-
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRI-------RGVTVGNVIRVNPS--------------------LKSIEAVVEVEDE- 158 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~-------~GV~VG~V~~I~l~--------------------~~~v~v~v~i~~~- 158 (264)
+.+++.++|+. ...+.+|.+|++ ..+=-|+|++|... ...+.|++.+++.
T Consensus 250 ~~l~V~a~v~E~~l~~v~~Gq~V~I~~da~p~~~~~~G~V~~I~~~~~~~~~~lp~~~~~g~~~~~~qr~~Vri~l~~~~ 329 (390)
T PRK15136 250 TNLWVDANFKETQLANMRIGQPATITSDIYGDDVVYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDAKQ 329 (390)
T ss_pred CcEEEEEecCHHHHhcCCCCCEEEEEEecCCCCceEEEEEEEECCcccccccCCCCccCCCCeEEEEEEEeEEEEECCCc
Q ss_pred --ccccCCCcEEEEE
Q 024672 159 --KTVIPQNALVEVN 171 (264)
Q Consensus 159 --~~~Ip~ds~a~I~ 171 (264)
+..++.|..+.+.
T Consensus 330 ~~~~~Lr~Gm~~~v~ 344 (390)
T PRK15136 330 LAQHPLRIGLSTLVT 344 (390)
T ss_pred cccCCccCCceEEEE
No 43
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=26.50 E-value=1.3e+02 Score=23.39 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCCCceEECC-eEEEEEEEEeeCCCeEEEEE
Q 024672 123 ICTGTPVRIRG-VTVGNVIRVNPSLKSIEAVV 153 (264)
Q Consensus 123 L~~Gs~V~~~G-V~VG~V~~I~l~~~~v~v~v 153 (264)
|.+|+-|||-+ =.+|+|.+|..+++..-|.+
T Consensus 3 I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~L 34 (91)
T PF09871_consen 3 IKVGSYVRYINTGTVGKVVDIKEEDGETWVLL 34 (91)
T ss_pred ceeCCEEEECCCCeEEEEEEEEEeCCCeEEEE
Confidence 67899999975 37899999987766543433
No 44
>PF04085 MreC: rod shape-determining protein MreC; InterPro: IPR007221 MreC (murein formation C) is involved in the rod shape determination in Escherichia coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.; GO: 0008360 regulation of cell shape; PDB: 2J5U_B 2QF4_B 2QF5_A.
Probab=25.02 E-value=97 Score=25.74 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=22.6
Q ss_pred EeccCCCCCCCCceEE--------CCeEEEEEEEEeeCCCe
Q 024672 116 EFSQACGICTGTPVRI--------RGVTVGNVIRVNPSLKS 148 (264)
Q Consensus 116 ~F~~a~GL~~Gs~V~~--------~GV~VG~V~~I~l~~~~ 148 (264)
+++.-..+++|..|.- .|++||+|++++.+...
T Consensus 87 ~i~~~~~i~~GD~V~TSG~~~~fP~Gi~VG~V~~v~~~~~~ 127 (152)
T PF04085_consen 87 YIPKDADIKKGDIVVTSGLGGIFPPGIPVGTVSSVEPDKSG 127 (152)
T ss_dssp EECTTS---TT-EEEEE-TTSSS-CCEEEEEEEEEECTTTC
T ss_pred ECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEEEEEeCCCC
Confidence 4577778888877654 58999999999987653
No 45
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=24.00 E-value=75 Score=27.71 Aligned_cols=8 Identities=13% Similarity=0.655 Sum_probs=4.9
Q ss_pred chhhhhhc
Q 024672 55 PRNIWRRT 62 (264)
Q Consensus 55 ~~~~~~~~ 62 (264)
++.+|+..
T Consensus 2 ~~~~~~~~ 9 (185)
T TIGR02161 2 LKRFWKWL 9 (185)
T ss_pred hHHHHHHH
Confidence 35677763
No 46
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=23.13 E-value=52 Score=26.16 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=4.3
Q ss_pred ceEEEEEEe
Q 024672 109 RKYLAVFEF 117 (264)
Q Consensus 109 ~~y~v~~~F 117 (264)
+.|...+.+
T Consensus 39 ~~Y~ssa~l 47 (152)
T PF02706_consen 39 PQYESSAQL 47 (152)
T ss_dssp --EEEEEEE
T ss_pred ccceEEEEE
Confidence 567666554
No 47
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=22.65 E-value=4.1e+02 Score=24.24 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=25.1
Q ss_pred ceEEEEEEecc--CCCCCCCCceEEC-----CeEEEEEEEEe
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRIR-----GVTVGNVIRVN 143 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~~-----GV~VG~V~~I~ 143 (264)
+.+.+.+.++. ..-|.+|.+|++. |.--|+|..|.
T Consensus 238 ~~~~v~~~v~e~~~~~i~~G~~v~i~~~~~~~~~~g~V~~Is 279 (327)
T TIGR02971 238 SQMYAVAEVYETDINRVRVGQRATITSTALSGPLRGTVRRIG 279 (327)
T ss_pred CcEEEEEEEcHHHHhhCCCCCEEEEEEcCCCCcEEEEEEEec
Confidence 45667777764 5678999888874 45568888884
No 48
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=22.13 E-value=4.2e+02 Score=25.41 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=25.2
Q ss_pred EEEEEEecc--CCCCCCCCceEEC---------CeEEEEEEEEeeCC
Q 024672 111 YLAVFEFSQ--ACGICTGTPVRIR---------GVTVGNVIRVNPSL 146 (264)
Q Consensus 111 y~v~~~F~~--a~GL~~Gs~V~~~---------GV~VG~V~~I~l~~ 146 (264)
..+.++++. +.-+.+|.+|++. |.--|+|.+|....
T Consensus 294 l~v~~~v~e~~~~~v~~G~~v~v~~~~~~~~~~~~~~g~V~~Is~~~ 340 (421)
T TIGR03794 294 LEGVAYFPVAEGKKIRPGMSVQITPSTVKAERDGYIRGTVTSVSEYP 340 (421)
T ss_pred EEEEEEECHHHHhhCCCCCEEEEEEcccccceeeeEEEEEEEecCCC
Confidence 556666654 5678999988774 44568898888653
No 49
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.99 E-value=4.5e+02 Score=23.67 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=26.4
Q ss_pred EEEEEeccCCCCCCCCceEECCeEEEEEEEEeeC
Q 024672 112 LAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPS 145 (264)
Q Consensus 112 ~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~ 145 (264)
++++.-....|+.+|++|.-.+=-||+|.++...
T Consensus 135 ~i~Id~G~~~Gv~~g~~Vv~~~GlVG~V~~v~~~ 168 (276)
T PRK13922 135 QVTIDKGSNDGVKKGMPVIDPGGLVGRVIEVSPN 168 (276)
T ss_pred EEEEccCcccCCCCCCceEcCCCCeEEEEEECCC
Confidence 3444445577999999998877789999998764
No 50
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=21.93 E-value=3.9e+02 Score=21.13 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=23.9
Q ss_pred CCCeEEEEEEEecCccccCCCcEEEEEeCC----cccceEEEEecC
Q 024672 145 SLKSIEAVVEVEDEKTVIPQNALVEVNQSG----LLMETLIDITPR 186 (264)
Q Consensus 145 ~~~~v~v~v~i~~~~~~Ip~ds~a~I~~~~----llG~~~I~L~pg 186 (264)
+++.+.+++++. .+ =...+.+.++..+ -.|.+.+.+-|+
T Consensus 45 ~d~~v~v~f~Vt-r~--~~~~a~C~VrA~~~d~aeVGrreV~vp~~ 87 (112)
T PF14155_consen 45 DDSTVEVTFDVT-RD--PGRPAVCIVRALDYDGAEVGRREVLVPPS 87 (112)
T ss_pred CCCEEEEEEEEE-EC--CCCCEEEEEEEEeCCCCEEEEEEEEECCC
Confidence 566788888886 22 2344555555433 368888888553
No 51
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.92 E-value=1.7e+02 Score=24.96 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=22.1
Q ss_pred ccccccchhhhhhccccCccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 024672 49 TAVMDVPRNIWRRTLRPLSDFGFGRRSVWEGGVGLFLVSGTVLLALSLA 97 (264)
Q Consensus 49 ~~~~~~~~~~~~~~~~p~~~~~m~rrs~~e~~VGlfvl~~lv~l~~~~~ 97 (264)
..-..||..+-+|-+|++. ..+|+-+++|+.+++++++
T Consensus 48 ~~~~~IP~~Vs~RM~rRm~-----------~~~GiP~~lG~~~f~~~y~ 85 (153)
T PF11947_consen 48 EDDSAIPEVVSNRMLRRMA-----------VFVGIPTALGVAVFVVFYY 85 (153)
T ss_pred ccccccCHHHHHHHHHHHH-----------HHhchHHHHHHHHHHHHHH
Confidence 3445677777777665443 2456666666666554443
No 52
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=21.05 E-value=93 Score=27.55 Aligned_cols=8 Identities=13% Similarity=0.626 Sum_probs=5.1
Q ss_pred chhhhhhc
Q 024672 55 PRNIWRRT 62 (264)
Q Consensus 55 ~~~~~~~~ 62 (264)
++.+|+..
T Consensus 11 ~~~~~~~~ 18 (200)
T PRK10617 11 IKRLWKWW 18 (200)
T ss_pred HHHHHHHH
Confidence 35688774
No 53
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.93 E-value=2.5e+02 Score=25.95 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.3
Q ss_pred EEEEeccCCCCCCCCceEEC-CeEEEEEEEEeeC
Q 024672 113 AVFEFSQACGICTGTPVRIR-GVTVGNVIRVNPS 145 (264)
Q Consensus 113 v~~~F~~a~GL~~Gs~V~~~-GV~VG~V~~I~l~ 145 (264)
+++.--...|+++|++|.-. +=-||+|.++...
T Consensus 134 i~IdkGs~dGV~~g~~Vi~~~~GLVG~V~~V~~~ 167 (283)
T TIGR00219 134 VVINKGFNDGVYKDMPVIADGKGLVGKVVSVGSN 167 (283)
T ss_pred EEEcCccccCCCCCCEEEcCCCceEEEEEEECCC
Confidence 44444456799999999999 7789999998864
No 54
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=20.62 E-value=2.1e+02 Score=26.52 Aligned_cols=41 Identities=27% Similarity=0.227 Sum_probs=30.9
Q ss_pred EeccCCCCCCCCceE--------ECCeEEEEEEEEeeCCCeEEEEEEEe
Q 024672 116 EFSQACGICTGTPVR--------IRGVTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 116 ~F~~a~GL~~Gs~V~--------~~GV~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
.+.....+.+|+.|. -.|++||+|++++.+..+....+.++
T Consensus 206 ~~~~~~~i~~GD~vvTSGlgg~fP~Gl~Vg~V~~v~~~~~~~~~~v~~~ 254 (284)
T COG1792 206 YLPPNSDIKEGDLVVTSGLGGVFPAGLPVGEVSSVKLDDYGLFKVVIVK 254 (284)
T ss_pred eccCCCCccCCCEEEecCCCCcCCCCcEEEEEEEEEeCCCceeEEEEEe
Confidence 455677888887654 45889999999999886666666664
Done!