Query 024672
Match_columns 264
No_of_seqs 184 out of 1559
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lnn_A Membrane fusion protein 43.0 1.2E+02 0.0043 26.5 9.3 63 109-171 206-279 (359)
2 3ne5_B Cation efflux system pr 33.9 54 0.0018 30.1 5.5 63 109-171 242-316 (413)
3 3fpp_A Macrolide-specific effl 33.2 1.3E+02 0.0045 26.2 7.8 63 109-171 191-267 (341)
4 1nnx_A Protein YGIW; structura 29.9 42 0.0014 25.7 3.4 55 117-171 28-87 (109)
5 1xe1_A Hypothetical protein PF 29.6 89 0.003 24.2 5.2 24 122-147 59-83 (116)
6 2j5u_A MREC protein; bacterial 27.0 54 0.0019 28.5 4.0 40 116-155 163-210 (255)
7 2lx0_A Membrane fusion protein 26.9 86 0.0029 18.4 3.5 20 73-92 2-21 (32)
8 2j5u_A MREC protein; bacterial 24.2 87 0.003 27.1 4.8 28 118-145 92-119 (255)
9 2qf4_A Cell shape determining 22.6 1.1E+02 0.0037 24.9 4.8 34 112-145 24-57 (172)
10 2qf4_A Cell shape determining 21.5 48 0.0016 27.0 2.4 32 117-148 103-142 (172)
11 1nz9_A Transcription antitermi 21.5 1.7E+02 0.0057 19.1 4.8 33 123-156 5-42 (58)
No 1
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=43.01 E-value=1.2e+02 Score=26.51 Aligned_cols=63 Identities=6% Similarity=0.126 Sum_probs=44.2
Q ss_pred ceEEEEEEec--cCCCCCCCCceEEC-----CeEEEEEEEEeeC----CCeEEEEEEEecCccccCCCcEEEEE
Q 024672 109 RKYLAVFEFS--QACGICTGTPVRIR-----GVTVGNVIRVNPS----LKSIEAVVEVEDEKTVIPQNALVEVN 171 (264)
Q Consensus 109 ~~y~v~~~F~--~a~GL~~Gs~V~~~-----GV~VG~V~~I~l~----~~~v~v~v~i~~~~~~Ip~ds~a~I~ 171 (264)
..+.+.+.++ +...|.+|.+|++. ..--|+|..|... ...+.+.+.+++.+-.+..|..+.+.
T Consensus 206 ~~l~v~~~v~e~~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~v~ 279 (359)
T 3lnn_A 206 SHVFVTANAQEKDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQAT 279 (359)
T ss_dssp SEEEEEEEECGGGSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEEEE
T ss_pred CeEEEEEEeCHHHHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEEEE
Confidence 5677777776 47789999999885 3346999999853 24677888887444456666666554
No 2
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=33.89 E-value=54 Score=30.12 Aligned_cols=63 Identities=8% Similarity=0.091 Sum_probs=41.3
Q ss_pred ceEEEEEEecc--CCCCCCCCceEEC-----CeEE-EEEEEEeeC----CCeEEEEEEEecCccccCCCcEEEEE
Q 024672 109 RKYLAVFEFSQ--ACGICTGTPVRIR-----GVTV-GNVIRVNPS----LKSIEAVVEVEDEKTVIPQNALVEVN 171 (264)
Q Consensus 109 ~~y~v~~~F~~--a~GL~~Gs~V~~~-----GV~V-G~V~~I~l~----~~~v~v~v~i~~~~~~Ip~ds~a~I~ 171 (264)
..+.+.+.++. ...|.+|.+|++. |-.+ |+|..|... .+.+.+++.+++.+-.+..|..+.+.
T Consensus 242 ~~l~v~~~v~e~~~~~i~~G~~v~v~~~~~p~~~~~G~V~~I~p~~d~~t~t~~v~i~l~n~~~~L~pGm~v~v~ 316 (413)
T 3ne5_B 242 DPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQ 316 (413)
T ss_dssp EEEEEEEEEEGGGHHHHTTCCCEEEEETTEEEEEEEECCCEECSCCBTTTTEEEEEEEEECTTCCSCTTCEEEEE
T ss_pred CeEEEEEEECHHHHHhccCCCeEEEEEecCCCcEEEEEEEEEeCccCCCCcEEEEEEEEECCCCccCCCCEEEEE
Confidence 45556666553 5579999998774 4333 999999853 24678888887444456666655544
No 3
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=33.20 E-value=1.3e+02 Score=26.15 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=43.0
Q ss_pred ceEEEEEEec--cCCCCCCCCceEEC--Ce----EEEEEEEEeeCCC------eEEEEEEEecCccccCCCcEEEEE
Q 024672 109 RKYLAVFEFS--QACGICTGTPVRIR--GV----TVGNVIRVNPSLK------SIEAVVEVEDEKTVIPQNALVEVN 171 (264)
Q Consensus 109 ~~y~v~~~F~--~a~GL~~Gs~V~~~--GV----~VG~V~~I~l~~~------~v~v~v~i~~~~~~Ip~ds~a~I~ 171 (264)
..+.+.+.++ +...|.+|.+|++. +. --|+|..|....+ .+.+++.+++.+-.+..|..+.+.
T Consensus 191 ~~l~v~~~v~e~~~~~v~~G~~v~v~~~~~~~~~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~~~l~~G~~~~v~ 267 (341)
T 3fpp_A 191 SAMLVKAQVSEADVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVH 267 (341)
T ss_dssp SEEEEEEECCGGGSTTCCTTCCCEECCSSSSSSCBCCCEEEECSSCCBSSSCBCCEEEEEEECSSSCCCTTCEEEEE
T ss_pred CcEEEEEEECHHHHhhCCCCCEEEEEEecCCCCEEEEEEEEEecCccccCceEEEEEEEEeCCCccccCCCCEEEEE
Confidence 4667777775 47789999998885 22 2599999986432 246777776444456677666554
No 4
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=29.89 E-value=42 Score=25.71 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=40.1
Q ss_pred eccCCCCCCCCceEECCeEEEEE--EEEeeCCCeEEEEEEEecCcc---ccCCCcEEEEE
Q 024672 117 FSQACGICTGTPVRIRGVTVGNV--IRVNPSLKSIEAVVEVEDEKT---VIPQNALVEVN 171 (264)
Q Consensus 117 F~~a~GL~~Gs~V~~~GV~VG~V--~~I~l~~~~v~v~v~i~~~~~---~Ip~ds~a~I~ 171 (264)
..++..+.-+++|.+.|--|-++ +...+.+++-.+.++|+++.+ .|..+.+++|.
T Consensus 28 V~~a~~~~Dd~~V~L~G~Iv~~~~~d~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~ 87 (109)
T 1nnx_A 28 VESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQ 87 (109)
T ss_dssp HHHHTTSCSSEEEEEEEEEEEEEETTEEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEE
T ss_pred HHHHhhCcCCCeEEEEEEEEEEeCCCeEEEECCCccEEEEEChhhcCCcccCCCCEEEEE
Confidence 35677889999999999988888 344466655588899963322 56777788774
No 5
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=29.58 E-value=89 Score=24.25 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=18.5
Q ss_pred CCCCCCceEECCe-EEEEEEEEeeCCC
Q 024672 122 GICTGTPVRIRGV-TVGNVIRVNPSLK 147 (264)
Q Consensus 122 GL~~Gs~V~~~GV-~VG~V~~I~l~~~ 147 (264)
-|++|++| -|= .+|+|.+|+.+.+
T Consensus 59 ~LK~G~~V--Pg~~~vg~VkSIE~~~e 83 (116)
T 1xe1_A 59 MIGVGFKV--KGPSGIGGIVRIERNRE 83 (116)
T ss_dssp EEETTCEE--ECSSCEEEEEEEEETTE
T ss_pred EEcCCCCc--CCCceEEEEEEEEECCc
Confidence 47888888 555 6899999998643
No 6
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=26.99 E-value=54 Score=28.48 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=28.2
Q ss_pred EeccCCCCCCCCceE--------ECCeEEEEEEEEeeCCCeEEEEEEE
Q 024672 116 EFSQACGICTGTPVR--------IRGVTVGNVIRVNPSLKSIEAVVEV 155 (264)
Q Consensus 116 ~F~~a~GL~~Gs~V~--------~~GV~VG~V~~I~l~~~~v~v~v~i 155 (264)
+++.-.-+++|..|. -.|++||+|++|+.+.++....+.+
T Consensus 163 ~i~~~~~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v 210 (255)
T 2j5u_A 163 QLPYDMKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFI 210 (255)
T ss_dssp EEETTSCCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEE
T ss_pred ECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEE
Confidence 356666788887654 4579999999999987554444444
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=26.87 E-value=86 Score=18.35 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=14.2
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 024672 73 RRSVWEGGVGLFLVSGTVLL 92 (264)
Q Consensus 73 rrs~~e~~VGlfvl~~lv~l 92 (264)
+...||...|+..+...+++
T Consensus 2 khtiweviaglvalltflaf 21 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAF 21 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34568999898877666554
No 8
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.22 E-value=87 Score=27.14 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.0
Q ss_pred ccCCCCCCCCceEECCeEEEEEEEEeeC
Q 024672 118 SQACGICTGTPVRIRGVTVGNVIRVNPS 145 (264)
Q Consensus 118 ~~a~GL~~Gs~V~~~GV~VG~V~~I~l~ 145 (264)
-...|+++|++|.-.+=-||+|.++...
T Consensus 92 Gs~dGV~~gm~Vi~~~GlVG~V~~V~~~ 119 (255)
T 2j5u_A 92 GSSDGVKPDMAVTTPSGLIGKVTTTGAK 119 (255)
T ss_dssp CGGGTCCTTCEEEETTEEEEEEEEECSS
T ss_pred CcccCCCCCCEEEECCccEEEEEEECCC
Confidence 3456999999999998889999999753
No 9
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=22.56 E-value=1.1e+02 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=27.5
Q ss_pred EEEEEeccCCCCCCCCceEECCeEEEEEEEEeeC
Q 024672 112 LAVFEFSQACGICTGTPVRIRGVTVGNVIRVNPS 145 (264)
Q Consensus 112 ~v~~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~ 145 (264)
++++.--...|+++|++|.-.+=-||+|.++...
T Consensus 24 ~i~IdkG~~dGv~~gm~Vi~~~GlVG~V~~V~~~ 57 (172)
T 2qf4_A 24 ELTLDAGRSKGASENMLAIANGGLIGSVSKVEEN 57 (172)
T ss_dssp EEEESCCGGGTCCTTCEEEETTEEEEEEEEECSS
T ss_pred EEEEeCCcccCCCCCCEEEECCCcEEEEEEECCC
Confidence 3554445677999999999998899999998754
No 10
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=21.54 E-value=48 Score=27.04 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=23.6
Q ss_pred eccCCCCCCCCceE--------ECCeEEEEEEEEeeCCCe
Q 024672 117 FSQACGICTGTPVR--------IRGVTVGNVIRVNPSLKS 148 (264)
Q Consensus 117 F~~a~GL~~Gs~V~--------~~GV~VG~V~~I~l~~~~ 148 (264)
++.-.-+++|..|. -.|++||+|++|+.+.+.
T Consensus 103 i~~~~~i~~GD~vvTSGl~g~fP~GipVG~V~~v~~~~~~ 142 (172)
T 2qf4_A 103 LNSNSDISAGDKVTTGGLGNFNVADIPVGEVVATTHSTDY 142 (172)
T ss_dssp CSCCCCCCTTCEEEEECCSSSCCEEEEEEEEEEEESTTCS
T ss_pred CCCCCCCCCCCEEEECCCCCcCCCCCEEEEEEEEecCCCC
Confidence 35556788887644 457999999999987543
No 11
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=21.52 E-value=1.7e+02 Score=19.06 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=23.3
Q ss_pred CCCCCceEEC-----CeEEEEEEEEeeCCCeEEEEEEEe
Q 024672 123 ICTGTPVRIR-----GVTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 123 L~~Gs~V~~~-----GV~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
+.+|..|++- |. .|.|.+++.+..++.+.+++-
T Consensus 5 ~~~Gd~V~V~~Gpf~g~-~g~v~~v~~~k~~v~V~v~~~ 42 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADF-TGTVTEINPERGKVKVMVTIF 42 (58)
T ss_dssp CCTTCEEEECSGGGTTC-EEEEEEEETTTTEEEEEEESS
T ss_pred cCCCCEEEEeecCCCCc-EEEEEEEcCCCCEEEEEEEeC
Confidence 5677788765 44 599999987666666666654
Done!