Query 024672
Match_columns 264
No_of_seqs 184 out of 1559
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 12:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024672.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024672hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmec1 f.23.9.1 (C:2-34) Bact 44.7 8.7 0.00064 21.5 2.6 21 81-101 5-25 (33)
2 d1pj5a1 b.44.2.1 (A:743-830) N 39.3 48 0.0035 22.0 8.0 57 113-172 5-64 (88)
3 d1v5va1 b.44.2.1 (A:313-401) G 28.4 76 0.0055 21.0 10.1 55 115-171 6-62 (89)
4 d1wosa1 b.44.2.1 (A:279-361) G 25.9 79 0.0058 20.3 8.6 41 116-156 7-49 (83)
5 d1vp7a_ a.7.13.1 (A:) Exonucle 20.8 74 0.0054 20.5 4.7 23 218-240 4-26 (68)
6 d2vv5a1 b.38.1.3 (A:113-179) M 20.7 26 0.0019 22.4 2.2 22 123-145 18-39 (67)
7 d1h9ra1 b.40.6.2 (A:123-199) C 18.9 54 0.0039 21.3 3.7 23 134-156 8-30 (77)
8 d1guta_ b.40.6.1 (A:) Molybdat 17.2 78 0.0057 19.8 4.1 23 134-156 7-29 (67)
9 d1h9ma2 b.40.6.2 (A:74-141) Cy 16.3 84 0.0061 19.6 4.1 23 134-156 7-29 (68)
10 d1whja_ b.34.10.1 (A:) Restin- 13.7 1.8E+02 0.013 19.9 5.7 58 120-187 22-82 (102)
No 1
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=44.69 E-value=8.7 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 024672 81 VGLFLVSGTVLLALSLAWLRG 101 (264)
Q Consensus 81 VGlfvl~~lv~l~~~~~~l~g 101 (264)
+|.+.++.++.+.++++|++-
T Consensus 5 ~gal~vi~il~l~ilvfw~gv 25 (33)
T d1xmec1 5 KGALAVILVLTLTILVFWLGV 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 466666666666666677653
No 2
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=39.35 E-value=48 Score=22.02 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=38.7
Q ss_pred EEEEeccCCCCCCC-CceEECCeEEEEEEEEeeCC--CeEEEEEEEecCccccCCCcEEEEEe
Q 024672 113 AVFEFSQACGICTG-TPVRIRGVTVGNVIRVNPSL--KSIEAVVEVEDEKTVIPQNALVEVNQ 172 (264)
Q Consensus 113 v~~~F~~a~GL~~G-s~V~~~GV~VG~V~~I~l~~--~~v~v~v~i~~~~~~Ip~ds~a~I~~ 172 (264)
+.+.+++...+..| .+|..+|-.||.|++-...+ ++..+..-|+ .++ ..+.+++|..
T Consensus 5 v~l~~d~~~~~~~g~epI~~~g~~VG~vTS~~~Sp~l~k~Iala~v~-~~~--~~g~~~~V~~ 64 (88)
T d1pj5a1 5 RCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLP-GTV--SVGDSVDIEY 64 (88)
T ss_dssp EEEEETTSCCCCCSCCEEEETTEEEEECCSEEEETTTTEEEEEEEEE-TTC--CTTCEEEEEE
T ss_pred EEEEEECCCcCcCCCCeEEECCEEEEEEECCeECchhccceEEEEEe-cCc--CCCCEEEEEE
Confidence 44556765555454 68999999999999988664 5555555554 333 3578888864
No 3
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.44 E-value=76 Score=20.98 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=36.0
Q ss_pred EEeccCCCCCCCCceEECCeEEEEEEEEeeCC--CeEEEEEEEecCccccCCCcEEEEE
Q 024672 115 FEFSQACGICTGTPVRIRGVTVGNVIRVNPSL--KSIEAVVEVEDEKTVIPQNALVEVN 171 (264)
Q Consensus 115 ~~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~--~~v~v~v~i~~~~~~Ip~ds~a~I~ 171 (264)
+.+++-.=...|.+|..+|-.||.|++-...+ ++-.+-.-++ .+ ....|..+.|.
T Consensus 6 l~~~~~~i~~~g~~I~~~g~~VG~vTSg~~Sp~l~~~Iala~v~-~~-~~~~g~~v~v~ 62 (89)
T d1v5va1 6 FKMIDKGIPREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVK-EE-YAKPGIEIEVE 62 (89)
T ss_dssp EEESSSCCCCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEE-GG-GCSTTCEEEEE
T ss_pred EEECCCccCCCCCEEEECCEEEEEEecCcCCCcCCceEEEEEEC-HH-HcCCCCEEEEE
Confidence 34455334568899999999999999999765 4434444553 22 23455666665
No 4
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=25.89 E-value=79 Score=20.34 Aligned_cols=41 Identities=27% Similarity=0.118 Sum_probs=29.4
Q ss_pred EeccCCCCCCCCceEECCeEEEEEEEEeeCC--CeEEEEEEEe
Q 024672 116 EFSQACGICTGTPVRIRGVTVGNVIRVNPSL--KSIEAVVEVE 156 (264)
Q Consensus 116 ~F~~a~GL~~Gs~V~~~GV~VG~V~~I~l~~--~~v~v~v~i~ 156 (264)
.+++-.-...|.+|..+|-.||.|++-..++ ++-.+...|+
T Consensus 7 ~i~~~~~~~~g~~I~~~g~~VG~vTSg~~Sp~l~k~Iala~i~ 49 (83)
T d1wosa1 7 ELSGKRIARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVS 49 (83)
T ss_dssp EESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred EECCCcCCCCCCEEEECCEEEEEEeCccCCCCCCceEEEEEEC
Confidence 3444334567899999999999999998765 5544555553
No 5
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=20.77 E-value=74 Score=20.49 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCc
Q 024672 218 QGVSLDELVGIVTRLGREMEGIG 240 (264)
Q Consensus 218 ~~~sld~Ll~~l~~l~~~l~~~~ 240 (264)
.+.++++.+..+..++++|+..+
T Consensus 4 ~p~sfEe~l~~LE~IV~~LE~g~ 26 (68)
T d1vp7a_ 4 LPQDFETALAELESLVSAMENGT 26 (68)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC
Confidence 45689999999999999998865
No 6
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=20.72 E-value=26 Score=22.39 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=16.7
Q ss_pred CCCCCceEECCeEEEEEEEEeeC
Q 024672 123 ICTGTPVRIRGVTVGNVIRVNPS 145 (264)
Q Consensus 123 L~~Gs~V~~~GV~VG~V~~I~l~ 145 (264)
..+|+-|++.|. .|+|.+|.+.
T Consensus 18 f~vGD~I~i~~~-~G~V~~I~l~ 39 (67)
T d2vv5a1 18 FRAGEYVDLGGV-AGTVLSVQIF 39 (67)
T ss_dssp SCTTCEEESSSC-EEEEEEECSS
T ss_pred ccCCCEEEECCE-EEEEEEEece
Confidence 356666777776 8999999984
No 7
>d1h9ra1 b.40.6.2 (A:123-199) C-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=18.90 E-value=54 Score=21.28 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=17.1
Q ss_pred eEEEEEEEEeeCCCeEEEEEEEe
Q 024672 134 VTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 134 V~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
.=-|+|++|..++...+|.+++.
T Consensus 8 ~l~g~V~~I~~~~~~~~V~v~l~ 30 (77)
T d1h9ra1 8 QWFGTITARDHDDVQQHVDVLLA 30 (77)
T ss_dssp EEEEEEEEECCCSSEEEEEEEET
T ss_pred EEEEEEEEEEECCCcEEEEEEEC
Confidence 34589999987776667777775
No 8
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Clostridium pasteurianum, MOP II [TaxId: 1501]}
Probab=17.19 E-value=78 Score=19.79 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=17.2
Q ss_pred eEEEEEEEEeeCCCeEEEEEEEe
Q 024672 134 VTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 134 V~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
.=-|+|++|..++...+|.+++.
T Consensus 7 ~l~g~V~~I~~~~~~~~V~l~l~ 29 (67)
T d1guta_ 7 QLKGKVVGLKKGVVTAEVVLEIA 29 (67)
T ss_dssp EEEEEEEEEEECSSEEEEEEEET
T ss_pred EEEEEEEEEEECCCcEEEEEEeC
Confidence 44589999998777777777774
No 9
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=16.33 E-value=84 Score=19.64 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=16.8
Q ss_pred eEEEEEEEEeeCCCeEEEEEEEe
Q 024672 134 VTVGNVIRVNPSLKSIEAVVEVE 156 (264)
Q Consensus 134 V~VG~V~~I~l~~~~v~v~v~i~ 156 (264)
.=-|+|++|+.++...+|.+.+.
T Consensus 7 ~l~g~V~~I~~~~~~~~V~l~~~ 29 (68)
T d1h9ma2 7 ILTGTVKTIETGAVNAEVTLALQ 29 (68)
T ss_dssp EEEEEEEEEEECSSEEEEEEEET
T ss_pred EEEEEEEEEEECCCcEEEEEEeC
Confidence 33589999988776667777774
No 10
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.74 E-value=1.8e+02 Score=19.93 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=39.0
Q ss_pred CCCCCCCCceEECCeEEEEEEEEeeCC--CeEEEEEEEecCccccCCCcEEEEEeCCc-ccceEEEEecCC
Q 024672 120 ACGICTGTPVRIRGVTVGNVIRVNPSL--KSIEAVVEVEDEKTVIPQNALVEVNQSGL-LMETLIDITPRD 187 (264)
Q Consensus 120 a~GL~~Gs~V~~~GV~VG~V~~I~l~~--~~v~v~v~i~~~~~~Ip~ds~a~I~~~~l-lG~~~I~L~pg~ 187 (264)
..+|.+|+.|.+.|-..|.|.=|..-+ ..+-+-++++ + ++.+ ..+- -|.+|-.-.|+.
T Consensus 22 ~~~l~vG~rV~v~~~~~G~VryvG~~~~~~g~~vGVeld-e--p~Gk-------ndGt~~G~~YF~C~~~~ 82 (102)
T d1whja_ 22 SLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELD-E--PEGK-------NNGSVGRVQYFKCAPKY 82 (102)
T ss_dssp HHTCCTTCEEEETTTEEEEEEEEEECSSSCSEEEEEEES-S--SCCS-------BSSEETTEECCCCCTTT
T ss_pred ccCCccCCEEEECCCCeEEEEEeeecCCCCCcEEEEEEC-C--CCCC-------CCCEECCEEEeecCCCc
Confidence 457999999999999999999888543 3456777774 3 1222 2333 377776555443
Done!