BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024673
MYHLRRSAISSVRSGLSCALKSEKRLLFPVSSSASAVENSAKSFSTALRSDFARPASADS
KQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSE
PKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKE
YKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNVC
LARMVLTEIRSRHLCSFCLCNRRK

High Scoring Gene Products

Symbol, full name Information P value
SD3
AT4G00026 		protein from Arabidopsis thaliana 1.1e-48
CG7382 protein from Drosophila melanogaster 0.00062

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024673
        (264 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1009023383 - symbol:SD3 "AT4G00026" species:37...   508  1.1e-48   1
FB|FBgn0031708 - symbol:CG7382 species:7227 "Drosophila m...   108  0.00062   1


>TAIR|locus:1009023383 [details] [associations]
            symbol:SD3 "AT4G00026" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0090351 "seedling
            development" evidence=IMP] InterPro:IPR013261 Pfam:PF08294
            GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AF069299
            GO:GO:0090351 EMBL:DQ487573 EMBL:AK228629 IPI:IPI00656971
            RefSeq:NP_001031562.1 UniGene:At.50764 ProteinModelPortal:Q1G3L1
            PRIDE:Q1G3L1 EnsemblPlants:AT4G00026.1 GeneID:3770411
            KEGG:ath:AT4G00026 TAIR:At4g00026 OMA:TYLIVEI PhylomeDB:Q1G3L1
            PANTHER:PTHR13032 Uniprot:Q1G3L1
        Length = 269

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 110/198 (55%), Positives = 135/198 (68%)

Query:    44 FSTALRSDFARPASADSKQI-SNGVSAHFRGQCNRGYIVNLRLPFQQM--DSRVANSKTY 100
             FS+A +     P S  SK++ SN   +      N G +   R P   +  ++R  N  + 
Sbjct:    25 FSSATQPCSGIPKS--SKRVFSNSFLSKDSTGAN-GLLFRFRNPQASICTEARPKNINSS 81

Query:   101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSXXXXXXX 160
                RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGASYS       
Sbjct:    82 YFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGASYSLVILAGL 141

Query:   161 XXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
                       FKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQE+RNRAARQR
Sbjct:   142 GVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQETRNRAARQR 201

Query:   221 IPNRVYTDEFGIEHVEVN 238
             IPNRV+TDE G+EHVEVN
Sbjct:   202 IPNRVFTDEDGVEHVEVN 219


>FB|FBgn0031708 [details] [associations]
            symbol:CG7382 species:7227 "Drosophila melanogaster"
            [GO:0005744 "mitochondrial inner membrane presequence translocase
            complex" evidence=IEA] [GO:0030150 "protein import into
            mitochondrial matrix" evidence=IEA] InterPro:IPR013261 Pfam:PF08294
            EMBL:AE014134 PANTHER:PTHR13032 eggNOG:NOG315292
            GeneTree:ENSGT00390000011552 EMBL:AY060901 RefSeq:NP_608929.1
            UniGene:Dm.309 IntAct:Q9VMR0 MINT:MINT-900894
            EnsemblMetazoa:FBtr0079130 GeneID:33772 KEGG:dme:Dmel_CG7382
            UCSC:CG7382-RA FlyBase:FBgn0031708 InParanoid:Q9VMR0 OMA:TDVRPIG
            OrthoDB:EOG4612MG GenomeRNAi:33772 NextBio:785178 Uniprot:Q9VMR0
        Length = 236

 Score = 108 (43.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 30/99 (30%), Positives = 47/99 (47%)

Query:   139 IPEKPVTFTEGASYSXXXXXXXXXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVR 198
             I EK    T+ ASY+                 F+EL        I+  AL+R+ +D +V+
Sbjct:    65 IGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFRELFSSESPNNIYADALRRVVEDPRVQ 124

Query:   199 VRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEV 237
               IG+PI G+G+ SR R  RQ + +  Y +  G  H+ +
Sbjct:   125 DAIGAPIKGFGETSR-RGRRQHVAHSSY-ERNGKPHMRM 161


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       234   0.00087  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  165 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.62u 0.10s 18.72t   Elapsed:  00:00:01
  Total cpu time:  18.62u 0.10s 18.72t   Elapsed:  00:00:01
  Start:  Mon May 20 17:04:27 2013   End:  Mon May 20 17:04:28 2013

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