BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024673
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1G3L1|TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit
TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1
Length = 269
Score = 209 bits (532), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 131/151 (86%)
Query: 91 DSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 150
++R N + RSFAS+TSK+ ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGA
Sbjct: 72 EARPKNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGA 131
Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
SYSL+ILAGLGVAGAA Y VFKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQ
Sbjct: 132 SYSLVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQ 191
Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVNVCL 241
E+RNRAARQRIPNRV+TDE G+EHVEVN +
Sbjct: 192 ETRNRAARQRIPNRVFTDEDGVEHVEVNFYI 222
>sp|Q5XKA2|TIM21_XENLA Mitochondrial import inner membrane translocase subunit Tim21
OS=Xenopus laevis GN=timm21 PE=2 SV=1
Length = 232
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 134 APTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQD 193
AP N K +Y +++L G+GV G Y VF+EL KI+ +AL++ +
Sbjct: 80 APPQNASHKVKEAGRDFTYFIVVLIGIGVTGGLFYVVFEELFSSSSPSKIYGEALEKCRS 139
Query: 194 DGQVRVRIGSPITGYGQESRNRAARQRI 221
+V G PI GYG+ +R R RQ +
Sbjct: 140 HPEVIGAFGEPIKGYGETTR-RGRRQHV 166
>sp|Q3SZV6|TIM21_BOVIN Mitochondrial import inner membrane translocase subunit Tim21
OS=Bos taurus GN=TIMM21 PE=2 SV=1
Length = 244
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
+Y +++L G+ + G Y +F+EL KI+ KAL++ + +V G P+ GYG+
Sbjct: 109 TYLIVVLIGISITGGLFYTIFRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGE 168
Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVN 238
+R R RQ + Y + G++H+ V
Sbjct: 169 VTR-RGRRQLVSFIEYKKD-GLKHMRVK 194
>sp|Q5U2X7|TIM21_RAT Mitochondrial import inner membrane translocase subunit Tim21
OS=Rattus norvegicus GN=Timm21 PE=2 SV=1
Length = 245
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 150 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 209
+Y +++L G+ + G+ Y +FKEL I+ KAL + + +V G P+ GYG
Sbjct: 107 VTYLIVVLFGVSITGSLLYTIFKELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYG 166
Query: 210 QESRNRAARQRIPNRVYTDEFGIEHVEV 237
+ SR R RQ + Y + G++ + V
Sbjct: 167 EMSR-RGRRQHVSFTEYANN-GLKRIRV 192
>sp|Q9BVV7|TIM21_HUMAN Mitochondrial import inner membrane translocase subunit Tim21
OS=Homo sapiens GN=TIMM21 PE=1 SV=1
Length = 248
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
+Y +++L G+ + G Y +FKEL KI+ +AL++ + +V G + GYG+
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGE 168
Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVN 238
+R R RQ + Y + G++H V
Sbjct: 169 VTR-RGRRQHVRFTEYVKD-GLKHTCVK 194
>sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane translocase subunit TIM21
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM21 PE=3 SV=1
Length = 269
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 145 TFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP 204
F + + Y IILA LG+ G Y + EL+ + +IFN+A K I+ + V +G
Sbjct: 102 VFFQLSWYLGIILAALGLFGLVWYYLIMELVMPSGDVRIFNRAFKEIEKNEDVMRVLGGQ 161
Query: 205 ITGYGQESRNRAARQRIP-NRVYTDEFGIEHVEVN 238
++ G+ R R + P ++ D++G EH+ +N
Sbjct: 162 LSSMGEGGGGRWGRNQPPVSKRGIDKYGREHIWMN 196
>sp|Q4X1I8|TIM21_ASPFU Mitochondrial import inner membrane translocase subunit tim21
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=tim21 PE=3 SV=1
Length = 237
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 154 LIILAGLGVAGAAAYAVFKELIFEPKEYKI-FNKALKRIQDDGQVRVRIGS--PITGYGQ 210
L+I+AG + G Y ++ E +F P F KA++RI+DD + +G I YG+
Sbjct: 87 LVIVAGAVLTGGVFYLLYTE-VFSPNSRTWQFEKAVQRIKDDPRCTDLLGDRREIKAYGE 145
Query: 211 ESRNRAARQR-IPNRVYTDEFGIEHVEVN 238
+ +R R R I ++ D G EH++++
Sbjct: 146 STGSRWERNRPIATSMFKDRQGREHMKMH 174
>sp|Q8CCM6|TIM21_MOUSE Mitochondrial import inner membrane translocase subunit Tim21
OS=Mus musculus GN=Timm21 PE=2 SV=1
Length = 249
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 150 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQV 197
SY +++L G+G+ G YA+FKEL F I+ KAL + + +V
Sbjct: 106 VSYLIVVLFGVGLTGGLLYAIFKELFFSSSPNIIYGKALGKCRTHPEV 153
>sp|Q23670|TOP2_CAEEL Probable DNA topoisomerase 2 OS=Caenorhabditis elegans GN=K12D12.1
PE=3 SV=2
Length = 1520
Score = 36.2 bits (82), Expect = 0.23, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
K I +ED DA T N + + TEG S + ++GL V G Y VF P K
Sbjct: 471 KGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVF------PLRGK 524
Query: 183 IFN---KALKRIQDDGQVRVRI 201
+ N +K+I D+ +V I
Sbjct: 525 LLNVREGNMKQIADNAEVNAMI 546
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 OS=Plasmodium falciparum (isolate K1 /
Thailand) GN=TOP2 PE=3 SV=1
Length = 1398
Score = 35.4 bits (80), Expect = 0.42, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 109 KTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAY 168
K K G+ + E I +ED DA + E + TEG S LAGL + G Y
Sbjct: 460 KKMKAGSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKY 519
Query: 169 AVFKELIFEPKEYKIFNKALKRIQDDGQVR 198
VF + K + + + K++ D+ +++
Sbjct: 520 GVFP---LKGKLLNVRDASFKQLMDNKEIQ 546
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1
Length = 1526
Score = 35.4 bits (80), Expect = 0.47, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
K I ++D DA + N E + TEG S + ++GLGV G Y VF P K
Sbjct: 435 KGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 488
Query: 183 IFN---KALKRIQDDGQV 197
I N + K+I ++ ++
Sbjct: 489 ILNVREASHKQIMENAEI 506
>sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=Top2a PE=2 SV=1
Length = 1526
Score = 35.4 bits (80), Expect = 0.47, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
K I ++D DA + N E + TEG S + ++GLGV G Y VF P K
Sbjct: 434 KGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 487
Query: 183 IFN---KALKRIQDDGQV 197
I N + K+I ++ ++
Sbjct: 488 ILNVREASHKQIMENAEI 505
>sp|Q5REP2|TIM21_PONAB Mitochondrial import inner membrane translocase subunit Tim21
OS=Pongo abelii GN=TIMM21 PE=2 SV=1
Length = 172
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVR 198
+Y +++L G+ + G Y +FKEL KI+ +AL++ + + R
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEGR 156
>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2
Length = 1528
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
K I ++D DA + N E + TEG S + ++GLGV G Y VF P K
Sbjct: 435 KGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 488
Query: 183 IFN---KALKRIQDDGQV 197
I N + K+I ++ ++
Sbjct: 489 ILNVREASHKQIMENAEI 506
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
Length = 1533
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
K I ++D DA N E + TEG S + ++GLGV G Y VF P K
Sbjct: 436 KGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 489
Query: 183 IFN---KALKRIQDDGQV 197
I N + K+I ++ ++
Sbjct: 490 ILNVREASHKQIMENAEI 507
>sp|Q75CX4|TIM21_ASHGO Mitochondrial import inner membrane translocase subunit TIM21
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM21 PE=3 SV=1
Length = 234
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 153 SLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVR 198
+++L GVAG Y + EL + +IFN+A+ ++ D R
Sbjct: 74 GMLVLGAAGVAGIVLYLILSELFSPSGDTQIFNRAVSTVEGDAVAR 119
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3
Length = 1531
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYK 182
K I ++D DA N E + TEG S + ++GLGV G Y VF P K
Sbjct: 436 KGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVF------PLRGK 489
Query: 183 IFN---KALKRIQDDGQV 197
I N + K+I ++ ++
Sbjct: 490 ILNVREASHKQIMENAEI 507
>sp|Q6CW96|TIM21_KLULA Mitochondrial import inner membrane translocase subunit TIM21
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM21
PE=3 SV=1
Length = 234
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 146 FTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDD 194
FT ++++ G+AG Y + EL + +IFN+A+ ++++D
Sbjct: 67 FTTFTFSGILVIGATGLAGVVIYLIGAELFSPSGDTQIFNRAVSKVEND 115
>sp|P90520|TOP2M_DICDI DNA topoisomerase 2, mitochondrial OS=Dictyostelium discoideum
GN=top2mt PE=2 SV=2
Length = 1284
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 111 SKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAV 170
S G ++ + K IS ++D A E + TEG S + LAGL V G +Y V
Sbjct: 529 STSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIITEGDSAKSLALAGLSVVGRNSYGV 588
Query: 171 F 171
F
Sbjct: 589 F 589
>sp|O42130|TOP2A_CHICK DNA topoisomerase 2-alpha OS=Gallus gallus GN=TOP2A PE=2 SV=2
Length = 1553
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 108 SKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAA 167
++ +K+ + K + ++D DA + N + + TEG S + ++GLGV G
Sbjct: 422 TQLNKKCSAVKHTKIKGVPKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK 481
Query: 168 YAVF 171
Y VF
Sbjct: 482 YGVF 485
>sp|Q8GWF1|WRK38_ARATH Probable WRKY transcription factor 38 OS=Arabidopsis thaliana
GN=WRKY38 PE=1 SV=1
Length = 289
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 8 AISSVRSGLSCALKSEKRLLFPVS-----SSASAVENSAKSFSTALRSDFARPASADSK 61
A+ ++R G SCA++ ++RL P++ SS ++ +SFS A+ A+P + D +
Sbjct: 10 AVQAIRYGHSCAMRLKRRLNHPMADGGPLSSYDLAKSIVESFSNAISILSAKPETEDDQ 68
>sp|O16140|TOP2_BOMMO DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1
Length = 1547
Score = 31.6 bits (70), Expect = 6.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 123 KDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVF 171
K I +ED DA T N + TEG S + ++GL V G Y VF
Sbjct: 444 KGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVF 492
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,106,115
Number of Sequences: 539616
Number of extensions: 3344465
Number of successful extensions: 9218
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9181
Number of HSP's gapped (non-prelim): 49
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)