Query 024673
Match_columns 264
No_of_seqs 132 out of 184
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ciu_A TIM21P, import inner me 100.0 4.6E-30 1.6E-34 212.4 9.4 82 175-256 2-99 (127)
2 1mzw_B U4/U6 snRNP 60KDA prote 43.0 4.2 0.00014 25.9 -0.4 17 199-215 7-23 (31)
3 2dk4_A PRE-mRNA-splicing facto 37.2 6.2 0.00021 29.9 -0.3 27 192-218 27-56 (76)
4 1uzc_A Hypothetical protein FL 20.3 24 0.00083 25.8 0.3 31 170-200 20-52 (71)
5 2dod_A Transcription elongatio 18.1 23 0.0008 26.6 -0.2 31 170-200 22-54 (82)
6 2b7e_A PRE-mRNA processing pro 17.7 28 0.00095 25.1 0.1 31 170-200 8-41 (59)
7 3qby_A Hepatoma-derived growth 15.6 51 0.0018 24.8 1.1 30 168-197 62-91 (94)
8 2lkq_A Immunoglobulin lambda-l 15.6 26 0.00089 21.3 -0.4 11 10-20 3-13 (26)
9 2y69_D Cytochrome C oxidase su 14.7 75 0.0026 27.1 2.1 56 152-211 103-159 (169)
10 1v54_D Cytochrome C oxidase su 14.2 71 0.0024 26.7 1.7 57 152-211 81-137 (147)
No 1
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-30 Score=212.40 Aligned_cols=82 Identities=18% Similarity=0.345 Sum_probs=74.2
Q ss_pred ccCCchhHHHHHHHHHhhcchHHHHHh----C----CCceeecCC-CCcccccCc-ccceEEECCCCceEEEEEEEEE--
Q 024673 175 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNVCLA-- 242 (264)
Q Consensus 175 Ffs~Spt~iFnrAv~rIk~Dprv~~~L----G----~pIkayGe~-t~nRwrRnr-Ias~~~~D~dG~EHmrMkF~Ve-- 242 (264)
|+++|+|++||+||++|++||+|+++| | +|||||||+ +++||+||| |+|++++|+||+|||+|+||||
T Consensus 2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~ 81 (127)
T 2ciu_A 2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK 81 (127)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence 477889999999999999999999999 6 899999999 889999999 9999999999999999999999
Q ss_pred ---EEEEEEEEecC-CCc
Q 024673 243 ---RMVLTEIRSRH-LCS 256 (264)
Q Consensus 243 ---G~V~lEm~k~~-~~~ 256 (264)
|+||+||+|+. ..+
T Consensus 82 ~~~G~V~le~~k~~~~~~ 99 (127)
T 2ciu_A 82 KKIALVHLEAKESKQNYQ 99 (127)
T ss_dssp SCEEEEEEEEECCSSCSS
T ss_pred CCcEEEEEEEEecCCCCc
Confidence 49999999965 444
No 2
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=43.04 E-value=4.2 Score=25.93 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.0
Q ss_pred HHhCCCceeecCCCCcc
Q 024673 199 VRIGSPITGYGQESRNR 215 (264)
Q Consensus 199 ~~LG~pIkayGe~t~nR 215 (264)
..||+||+=|||...+|
T Consensus 7 R~lgePi~lFGE~~~~R 23 (31)
T 1mzw_B 7 RALGEPITLFGEGPAER 23 (31)
T ss_dssp HHTTCCSEETTCCHHHH
T ss_pred HHcCCCeeecCCChHHH
Confidence 46799999999987654
No 3
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=37.20 E-value=6.2 Score=29.91 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=19.4
Q ss_pred hcchHHHHHh---CCCceeecCCCCccccc
Q 024673 192 QDDGQVRVRI---GSPITGYGQESRNRAAR 218 (264)
Q Consensus 192 k~Dprv~~~L---G~pIkayGe~t~nRwrR 218 (264)
-.|.+|+..| |+||+=|||....|..|
T Consensus 27 ~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~R 56 (76)
T 2dk4_A 27 LSRQEVIRRLRERGEPIRLFGETDYDAFQR 56 (76)
T ss_dssp SCHHHHHHHHHHHTCCSSCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCeeecCCChHHHHHH
Confidence 3466676655 99999999987654433
No 4
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.34 E-value=24 Score=25.81 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=23.5
Q ss_pred hhhhhccCC--chhHHHHHHHHHhhcchHHHHH
Q 024673 170 VFKELIFEP--KEYKIFNKALKRIQDDGQVRVR 200 (264)
Q Consensus 170 l~sELFfs~--Spt~iFnrAv~rIk~Dprv~~~ 200 (264)
.|.+|+-.. +|+..+++++++|.+|||-..+
T Consensus 20 ~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al 52 (71)
T 1uzc_A 20 AFKELLKEKRVPSNASWEQAMKMIINDPRYSAL 52 (71)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGC
T ss_pred HHHHHHHHcCcCCCCCHHHHHHHHccCcccccc
Confidence 345554433 6799999999999999998754
No 5
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=18.09 E-value=23 Score=26.62 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=23.9
Q ss_pred hhhhhccC--CchhHHHHHHHHHhhcchHHHHH
Q 024673 170 VFKELIFE--PKEYKIFNKALKRIQDDGQVRVR 200 (264)
Q Consensus 170 l~sELFfs--~Spt~iFnrAv~rIk~Dprv~~~ 200 (264)
.|.||+-. -+|+..+++++.+|.+||+-..+
T Consensus 22 ~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL 54 (82)
T 2dod_A 22 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLL 54 (82)
T ss_dssp HHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTS
T ss_pred HHHHHHHHcCcCCCCCHHHHHHHHccCCccccC
Confidence 44555443 36899999999999999998764
No 6
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=17.73 E-value=28 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=23.9
Q ss_pred hhhhhccCC--chhHHHHHHHHHh-hcchHHHHH
Q 024673 170 VFKELIFEP--KEYKIFNKALKRI-QDDGQVRVR 200 (264)
Q Consensus 170 l~sELFfs~--Spt~iFnrAv~rI-k~Dprv~~~ 200 (264)
.|.+|+-.+ +|+..|++|++.| -+||+-..+
T Consensus 8 aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al 41 (59)
T 2b7e_A 8 EFITMLKENQVDSTWSFSRIISELGTRDPRYWMV 41 (59)
T ss_dssp HHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHS
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHhccCCCccccc
Confidence 356666554 5799999999999 899987643
No 7
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=15.62 E-value=51 Score=24.82 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=24.0
Q ss_pred HhhhhhhccCCchhHHHHHHHHHhhcchHH
Q 024673 168 YAVFKELIFEPKEYKIFNKALKRIQDDGQV 197 (264)
Q Consensus 168 Y~l~sELFfs~Spt~iFnrAv~rIk~Dprv 197 (264)
|.-..|-|..++-...|++||+-|++||.+
T Consensus 62 f~~~~~~~~k~~k~k~F~~Al~Eien~p~~ 91 (94)
T 3qby_A 62 YDKCKDKYGKPNKRKGFNEGLWEIQNNPHA 91 (94)
T ss_dssp HHHHHHHHCSCCSSTTHHHHHHHHHHCTTS
T ss_pred HHHHHHHHccCccHHHHHHHHHHHhhCCCC
Confidence 333466767777799999999999999975
No 8
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=15.62 E-value=26 Score=21.34 Aligned_cols=11 Identities=45% Similarity=0.344 Sum_probs=8.7
Q ss_pred hhhhccccccc
Q 024673 10 SSVRSGLSCAL 20 (264)
Q Consensus 10 ~~~~~~~~~~~ 20 (264)
||||+||-.+|
T Consensus 3 sslrsrwgrfl 13 (26)
T 2lkq_A 3 SSLRSRWGRFL 13 (26)
T ss_dssp TTTTTHHHHHT
T ss_pred hhHHHHHHHHH
Confidence 68899987765
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.74 E-value=75 Score=27.14 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=29.2
Q ss_pred eeeehhhHHHHHHHHHHhhhhhhc-cCCchhHHHHHHHHHhhcchHHHHHhCCCceeecCC
Q 024673 152 YSLIILAGLGVAGAAAYAVFKELI-FEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQE 211 (264)
Q Consensus 152 y~~VIL~Glgltg~v~Y~l~sELF-fs~Spt~iFnrAv~rIk~Dprv~~~LG~pIkayGe~ 211 (264)
-++.+++++|+++++++++ -+| ..|-|. .|++=-. -+.+.+..+.=-.||+|+-..
T Consensus 103 V~ggv~~~i~~s~~~f~~~--r~~v~~p~P~-T~~~Ewq-eaq~erml~~~~NPitG~SSk 159 (169)
T 2y69_D 103 VVGAAMFFIGFTALLLIWE--KHYVYGPIPH-TFEEEWV-AKQTKRMLDMKVAPIQGFSAK 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTCCCCCG-GGSHHHH-HHHHHHHHHTTSSTTTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHccCCCCC-CCCHHHH-HHHHHHHHHcCCCCCcCchhh
Confidence 3555566667666555544 333 334442 2332222 234555566666788877654
No 10
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=14.17 E-value=71 Score=26.68 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=29.0
Q ss_pred eeeehhhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHhhcchHHHHHhCCCceeecCC
Q 024673 152 YSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQE 211 (264)
Q Consensus 152 y~~VIL~Glgltg~v~Y~l~sELFfs~Spt~iFnrAv~rIk~Dprv~~~LG~pIkayGe~ 211 (264)
-++.+++++|+++++++++=.=+ ..|-|. .|++=-. -+.+.+..+.=-.||+|+-..
T Consensus 81 v~g~v~~~i~~s~~~f~~~r~~v-~~p~P~-T~~~Ewq-eaq~erm~~~~~nPi~G~ss~ 137 (147)
T 1v54_D 81 VVGAAMFFIGFTALLLIWEKHYV-YGPIPH-TFEEEWV-AKQTKRMLDMKVAPIQGFSAK 137 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CCCCCG-GGSHHHH-HHHHHHHHHTTSSTTTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-cCCCCC-CCCHHHH-HHHHHHHHHccCCCCcCchhh
Confidence 35555666676665555443222 334442 2332222 234555566666788876553
Done!