Query 024673
Match_columns 264
No_of_seqs 132 out of 184
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 12:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dk4a1 a.140.6.1 (A:8-70) Pre 33.2 3.7 0.00027 28.5 -0.3 23 193-215 21-46 (63)
2 d2dw4a2 c.3.1.2 (A:274-654,A:7 23.1 7.1 0.00052 28.7 -0.3 19 155-173 8-26 (449)
3 d2bcgg1 c.3.1.3 (G:5-301) Guan 21.8 8.3 0.0006 27.3 -0.2 19 155-173 8-26 (297)
4 d1b5qa1 c.3.1.2 (A:5-293,A:406 18.5 10 0.00074 26.6 -0.3 20 155-174 3-22 (347)
5 d1v54d_ f.23.1.1 (D:) Mitochon 17.8 34 0.0024 26.6 2.6 61 148-211 74-134 (144)
6 d1d5ta1 c.3.1.3 (A:-2-291,A:38 16.7 13 0.00092 27.0 -0.2 20 155-174 9-28 (336)
7 d1ue1a_ b.40.4.3 (A:) ssDNA-bi 16.3 44 0.0032 23.6 2.9 22 221-242 81-102 (118)
8 d1lsta_ c.94.1.1 (A:) Lysine-, 15.2 51 0.0037 24.1 3.0 21 181-201 207-227 (238)
9 d1i8ta1 c.4.1.3 (A:1-244,A:314 15.2 16 0.0012 29.6 0.1 20 155-174 4-23 (298)
10 d2nlua1 b.34.9.2 (A:1-100) Hep 14.4 30 0.0022 24.4 1.4 26 173-198 71-96 (100)
No 1
>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.22 E-value=3.7 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=17.3
Q ss_pred cchHHHHHh---CCCceeecCCCCcc
Q 024673 193 DDGQVRVRI---GSPITGYGQESRNR 215 (264)
Q Consensus 193 ~Dprv~~~L---G~pIkayGe~t~nR 215 (264)
.|.+|+..| |+||+=|||....|
T Consensus 21 ~~~eV~~~LR~lgePI~lFGE~~~~r 46 (63)
T d2dk4a1 21 SRQEVIRRLRERGEPIRLFGETDYDA 46 (63)
T ss_dssp CHHHHHHHHHHHTCCSSCTTCCHHHH
T ss_pred CHHHHHHHHHHcCCCeehhcCChHHH
Confidence 355666655 99999999987654
No 2
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.14 E-value=7.1 Score=28.74 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=14.0
Q ss_pred ehhhHHHHHHHHHHhhhhh
Q 024673 155 IILAGLGVAGAAAYAVFKE 173 (264)
Q Consensus 155 VIL~Glgltg~v~Y~l~sE 173 (264)
|||+|.|++|+..-..+.+
T Consensus 8 ViVIGaG~aGL~aA~~L~~ 26 (449)
T d2dw4a2 8 VIIIGSGVSGLAAARQLQS 26 (449)
T ss_dssp EEEECCBHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHh
Confidence 7788999998877655544
No 3
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.76 E-value=8.3 Score=27.29 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=12.1
Q ss_pred ehhhHHHHHHHHHHhhhhh
Q 024673 155 IILAGLGVAGAAAYAVFKE 173 (264)
Q Consensus 155 VIL~Glgltg~v~Y~l~sE 173 (264)
|||+|.|++|++.=..+++
T Consensus 8 viViGaG~~Gl~~A~~La~ 26 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSV 26 (297)
T ss_dssp EEEECCSHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHH
Confidence 5667777777766555443
No 4
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=18.47 E-value=10 Score=26.62 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=13.7
Q ss_pred ehhhHHHHHHHHHHhhhhhh
Q 024673 155 IILAGLGVAGAAAYAVFKEL 174 (264)
Q Consensus 155 VIL~Glgltg~v~Y~l~sEL 174 (264)
|||+|.|++|+..-..+.+.
T Consensus 3 V~IIGaG~aGL~aA~~L~~~ 22 (347)
T d1b5qa1 3 VIVVGAGMSGISAAKRLSEA 22 (347)
T ss_dssp EEEECCBHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHhC
Confidence 67788888887665555443
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.83 E-value=34 Score=26.59 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=32.6
Q ss_pred ecceeeeehhhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHhhcchHHHHHhCCCceeecCC
Q 024673 148 EGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQE 211 (264)
Q Consensus 148 q~ssy~~VIL~Glgltg~v~Y~l~sELFfs~Spt~iFnrAv~rIk~Dprv~~~LG~pIkayGe~ 211 (264)
+--.-++.+++|+|+++++++++-.=++ +|-| ..|++=- .-+.+.+..+.=-.||+|+-..
T Consensus 74 ewK~v~g~~~~~i~~s~~i~~~~r~~v~-p~~P-~T~~~Ew-qeaq~erm~~~~~nPitG~SSk 134 (144)
T d1v54d_ 74 EWKTVVGAAMFFIGFTALLLIWEKHYVY-GPIP-HTFEEEW-VAKQTKRMLDMKVAPIQGFSAK 134 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCC-GGGSHHH-HHHHHHHHHHTTSSTTTTSGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCC-CCCCHHH-HHHHHHHHHHcCCCCCCCcccc
Confidence 3334456667777887766665544342 3223 2333211 1124555666666889888763
No 6
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.68 E-value=13 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=14.4
Q ss_pred ehhhHHHHHHHHHHhhhhhh
Q 024673 155 IILAGLGVAGAAAYAVFKEL 174 (264)
Q Consensus 155 VIL~Glgltg~v~Y~l~sEL 174 (264)
|||+|.|++|+++=..+.+.
T Consensus 9 vvIIGaG~aGl~aA~~Lak~ 28 (336)
T d1d5ta1 9 VIVLGTGLTECILSGIMSVN 28 (336)
T ss_dssp EEEECCSHHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHC
Confidence 56778888888776665554
No 7
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.33 E-value=44 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=18.6
Q ss_pred ccceEEECCCCceEEEEEEEEE
Q 024673 221 IPNRVYTDEFGIEHVEVNVCLA 242 (264)
Q Consensus 221 Ias~~~~D~dG~EHmrMkF~Ve 242 (264)
+.+..|.|+||.+|..+...++
T Consensus 81 L~~~~~~~~dG~~r~~~~v~a~ 102 (118)
T d1ue1a_ 81 LKQRSFETREGEKRTVIEVEVD 102 (118)
T ss_dssp EEEEEECSSSSSCEEEEEEEEE
T ss_pred eeeceEECCCCCEEEEEEEEEE
Confidence 4556888999999999988887
No 8
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}
Probab=15.24 E-value=51 Score=24.15 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhcchHHHHHh
Q 024673 181 YKIFNKALKRIQDDGQVRVRI 201 (264)
Q Consensus 181 t~iFnrAv~rIk~Dprv~~~L 201 (264)
-..+|+|++.+++|.+..+++
T Consensus 207 ~~~in~~l~~~~~~G~~~~I~ 227 (238)
T d1lsta_ 207 KAAFDKALTELRQDGTYDKMA 227 (238)
T ss_dssp HHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHH
Confidence 577999999999998877665
No 9
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.20 E-value=16 Score=29.56 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.0
Q ss_pred ehhhHHHHHHHHHHhhhhhh
Q 024673 155 IILAGLGVAGAAAYAVFKEL 174 (264)
Q Consensus 155 VIL~Glgltg~v~Y~l~sEL 174 (264)
|||+|+|++|+++-..++|.
T Consensus 4 v~IIGaG~sGl~~A~~L~~~ 23 (298)
T d1i8ta1 4 YIIVGSGLFGAVCANELKKL 23 (298)
T ss_dssp EEEECCSHHHHHHHHHHGGG
T ss_pred EEEECCcHHHHHHHHHHHhC
Confidence 67889999998887766665
No 10
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.37 E-value=30 Score=24.44 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=20.7
Q ss_pred hhccCCchhHHHHHHHHHhhcchHHH
Q 024673 173 ELIFEPKEYKIFNKALKRIQDDGQVR 198 (264)
Q Consensus 173 ELFfs~Spt~iFnrAv~rIk~Dprv~ 198 (264)
|-+..+.....|.+|++-+++||.++
T Consensus 71 ~~~~~~~k~~~f~~Av~e~e~~p~~~ 96 (100)
T d2nlua1 71 EKFGKPNKRKGFSEGLWEIENNPTVK 96 (100)
T ss_dssp HHHSCCSCCHHHHHHHHHHHTCSSCS
T ss_pred HHHhcccchHHHHHHHHHHHhCcccc
Confidence 44456666889999999999998764
Done!