Query 024675
Match_columns 264
No_of_seqs 296 out of 1485
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vi6_A Homeobox protein nanog; 99.8 5.4E-19 1.9E-23 126.1 6.2 61 53-113 2-62 (62)
2 2h1k_A IPF-1, pancreatic and d 99.8 1.1E-18 3.8E-23 124.9 7.8 60 53-112 2-61 (63)
3 2dmu_A Homeobox protein goosec 99.8 1.4E-18 4.8E-23 126.8 7.4 62 52-113 5-66 (70)
4 2ecc_A Homeobox and leucine zi 99.8 1.4E-18 4.8E-23 129.7 7.1 60 54-113 3-62 (76)
5 2cue_A Paired box protein PAX6 99.8 2.9E-18 9.8E-23 128.4 8.8 63 52-114 5-67 (80)
6 2cra_A Homeobox protein HOX-B1 99.8 1.1E-18 3.7E-23 127.5 6.4 62 52-113 5-66 (70)
7 1nk2_P Homeobox protein VND; h 99.7 2E-18 6.7E-23 128.4 7.5 64 54-117 9-72 (77)
8 2e1o_A Homeobox protein PRH; D 99.7 2.3E-18 7.8E-23 125.8 7.6 61 53-113 6-66 (70)
9 1ig7_A Homeotic protein MSX-1; 99.7 2.9E-18 1E-22 120.5 7.8 57 55-111 1-57 (58)
10 2hdd_A Protein (engrailed home 99.7 2.3E-18 8E-23 122.4 7.2 58 54-111 3-60 (61)
11 2dmq_A LIM/homeobox protein LH 99.7 2.8E-18 9.6E-23 128.2 7.9 61 53-113 6-66 (80)
12 2dmt_A Homeobox protein BARH-l 99.7 1.6E-18 5.6E-23 129.8 6.6 61 53-113 16-76 (80)
13 2da2_A Alpha-fetoprotein enhan 99.7 2.2E-18 7.4E-23 125.7 6.6 62 52-113 5-66 (70)
14 2da3_A Alpha-fetoprotein enhan 99.7 9.7E-19 3.3E-23 130.5 4.8 61 53-113 16-76 (80)
15 1zq3_P PRD-4, homeotic bicoid 99.7 4.7E-18 1.6E-22 123.5 8.1 60 54-113 2-61 (68)
16 2dms_A Homeobox protein OTX2; 99.7 2.6E-18 9E-23 128.6 6.9 61 53-113 6-66 (80)
17 1puf_A HOX-1.7, homeobox prote 99.7 6.2E-18 2.1E-22 125.7 8.7 61 53-113 12-72 (77)
18 2da1_A Alpha-fetoprotein enhan 99.7 2.6E-18 8.8E-23 125.3 6.4 61 53-113 6-66 (70)
19 1yz8_P Pituitary homeobox 2; D 99.7 2E-18 6.7E-23 125.4 5.8 61 53-113 2-62 (68)
20 1fjl_A Paired protein; DNA-bin 99.7 5.5E-18 1.9E-22 127.1 8.3 61 53-113 17-77 (81)
21 2djn_A Homeobox protein DLX-5; 99.7 2.1E-18 7E-23 126.0 5.8 61 53-113 6-66 (70)
22 1uhs_A HOP, homeodomain only p 99.7 5.8E-18 2E-22 124.3 8.1 59 55-113 2-61 (72)
23 3a01_A Homeodomain-containing 99.7 2.4E-18 8.1E-23 132.7 6.3 64 53-116 16-79 (93)
24 1jgg_A Segmentation protein EV 99.7 5.3E-18 1.8E-22 120.2 7.3 58 55-112 2-59 (60)
25 1ahd_P Antennapedia protein mu 99.7 5.2E-18 1.8E-22 123.4 7.4 59 55-113 3-61 (68)
26 2r5y_A Homeotic protein sex co 99.7 4.6E-18 1.6E-22 129.5 7.1 61 52-112 26-86 (88)
27 1bw5_A ISL-1HD, insulin gene e 99.7 3.9E-18 1.3E-22 123.1 6.2 60 54-113 3-62 (66)
28 2kt0_A Nanog, homeobox protein 99.7 2.7E-18 9.4E-23 129.4 5.5 61 53-113 21-81 (84)
29 3rkq_A Homeobox protein NKX-2. 99.7 8.3E-18 2.8E-22 117.7 7.4 57 54-110 2-58 (58)
30 2hi3_A Homeodomain-only protei 99.7 1.1E-17 3.6E-22 123.3 8.2 59 55-113 3-62 (73)
31 2l7z_A Homeobox protein HOX-A1 99.7 7.3E-18 2.5E-22 124.2 7.3 61 53-113 6-66 (73)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 9E-18 3.1E-22 122.0 7.6 59 55-113 3-61 (68)
33 2da5_A Zinc fingers and homeob 99.7 5.8E-18 2E-22 125.5 6.4 60 54-113 7-66 (75)
34 3a03_A T-cell leukemia homeobo 99.7 9.5E-18 3.3E-22 117.4 7.2 54 59-112 2-55 (56)
35 1b8i_A Ultrabithorax, protein 99.7 6.4E-18 2.2E-22 127.0 6.7 61 53-113 19-79 (81)
36 3a02_A Homeobox protein arista 99.7 8.1E-18 2.8E-22 119.2 6.6 57 57-113 2-58 (60)
37 2k40_A Homeobox expressed in E 99.7 9.3E-18 3.2E-22 121.4 7.1 60 55-114 2-61 (67)
38 3nar_A ZHX1, zinc fingers and 99.7 8.4E-18 2.9E-22 130.2 6.5 63 53-115 24-86 (96)
39 1wh5_A ZF-HD homeobox family p 99.7 4.1E-18 1.4E-22 128.1 4.6 59 53-111 16-78 (80)
40 1akh_A Protein (mating-type pr 99.7 1E-17 3.5E-22 118.9 6.4 57 54-110 5-61 (61)
41 2da4_A Hypothetical protein DK 99.7 7.8E-18 2.7E-22 126.0 5.6 61 53-113 7-71 (80)
42 2m0c_A Homeobox protein arista 99.7 2E-17 6.9E-22 121.7 7.3 61 53-113 8-68 (75)
43 2ly9_A Zinc fingers and homeob 99.7 2E-17 7E-22 121.7 7.0 60 54-113 6-65 (74)
44 2ecb_A Zinc fingers and homeob 99.7 1.9E-17 6.6E-22 127.0 7.0 58 56-113 13-70 (89)
45 1b72_A Protein (homeobox prote 99.7 2E-17 7E-22 128.2 7.3 62 52-113 32-93 (97)
46 1k61_A Mating-type protein alp 99.7 3.2E-17 1.1E-21 116.0 7.3 56 57-112 1-59 (60)
47 1puf_B PRE-B-cell leukemia tra 99.7 2.4E-17 8.1E-22 121.2 6.6 61 55-115 2-65 (73)
48 2dn0_A Zinc fingers and homeob 99.7 2.3E-17 8E-22 122.3 6.5 60 54-113 8-67 (76)
49 1wh7_A ZF-HD homeobox family p 99.7 6.7E-18 2.3E-22 127.1 3.6 58 53-111 16-78 (80)
50 1x2n_A Homeobox protein pknox1 99.7 2.6E-17 8.8E-22 121.0 6.6 61 53-113 6-69 (73)
51 2cqx_A LAG1 longevity assuranc 99.7 1E-17 3.6E-22 123.5 4.1 59 54-112 8-67 (72)
52 1du6_A PBX1, homeobox protein 99.7 2.6E-17 8.7E-22 118.0 5.0 58 54-111 3-63 (64)
53 1b72_B Protein (PBX1); homeodo 99.7 7.8E-17 2.7E-21 122.1 7.6 59 55-113 2-63 (87)
54 2dmp_A Zinc fingers and homeob 99.7 8.2E-17 2.8E-21 123.1 7.4 58 56-113 15-72 (89)
55 1le8_B Mating-type protein alp 99.7 8.2E-17 2.8E-21 121.4 6.4 61 55-115 3-66 (83)
56 2cuf_A FLJ21616 protein; homeo 99.7 1.3E-16 4.3E-21 123.2 7.5 61 53-113 6-81 (95)
57 1mnm_C Protein (MAT alpha-2 tr 99.7 1.6E-16 5.6E-21 120.6 7.7 59 53-111 26-87 (87)
58 3nau_A Zinc fingers and homeob 99.7 1.7E-16 5.9E-21 115.0 7.1 53 61-113 11-63 (66)
59 2dmn_A Homeobox protein TGIF2L 99.7 1.6E-16 5.6E-21 119.9 7.2 62 53-114 6-70 (83)
60 2l9r_A Homeobox protein NKX-3. 99.7 9.4E-17 3.2E-21 117.6 5.4 55 60-114 10-64 (69)
61 2e19_A Transcription factor 8; 99.6 2E-16 6.7E-21 114.1 6.5 55 57-111 6-60 (64)
62 1x2m_A LAG1 longevity assuranc 99.6 9.7E-17 3.3E-21 116.0 4.5 51 62-112 8-59 (64)
63 1au7_A Protein PIT-1, GHF-1; c 99.6 2E-16 6.8E-21 131.3 6.2 60 53-112 86-145 (146)
64 3d1n_I POU domain, class 6, tr 99.6 3.8E-16 1.3E-20 130.0 7.1 59 53-111 92-150 (151)
65 1e3o_C Octamer-binding transcr 99.6 3.4E-16 1.2E-20 131.6 6.7 60 53-112 100-159 (160)
66 1wi3_A DNA-binding protein SAT 99.6 8E-16 2.7E-20 112.0 6.8 58 53-110 6-64 (71)
67 2da6_A Hepatocyte nuclear fact 99.6 1.5E-15 5E-20 119.1 8.6 61 53-113 5-86 (102)
68 2xsd_C POU domain, class 3, tr 99.6 5.1E-16 1.8E-20 131.3 6.5 61 53-113 98-158 (164)
69 3l1p_A POU domain, class 5, tr 99.6 1E-15 3.5E-20 128.1 7.1 60 53-112 95-154 (155)
70 3k2a_A Homeobox protein MEIS2; 99.6 9.6E-16 3.3E-20 111.3 5.9 59 60-118 4-65 (67)
71 2d5v_A Hepatocyte nuclear fact 99.6 1.7E-15 5.8E-20 127.5 6.2 61 53-113 96-156 (164)
72 1lfb_A Liver transcription fac 99.6 1.4E-15 5E-20 118.7 5.1 60 54-113 9-89 (99)
73 2da7_A Zinc finger homeobox pr 99.4 2.7E-13 9.2E-18 99.1 6.2 46 63-108 14-59 (71)
74 2lk2_A Homeobox protein TGIF1; 99.4 6.4E-13 2.2E-17 101.7 7.5 56 60-115 11-69 (89)
75 1ic8_A Hepatocyte nuclear fact 99.4 3.5E-13 1.2E-17 116.9 4.5 58 54-111 115-193 (194)
76 1mh3_A Maltose binding-A1 home 99.2 3.3E-12 1.1E-16 118.7 4.9 55 56-110 367-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 1.2E-11 4.2E-16 108.8 6.1 55 55-109 143-218 (221)
78 2nzz_A Penetratin conjugated G 98.9 7.1E-11 2.4E-15 76.1 -2.0 27 96-122 1-27 (37)
79 2ys9_A Homeobox and leucine zi 94.3 0.058 2E-06 39.0 4.6 43 62-104 14-56 (70)
80 2yy0_A C-MYC-binding protein; 89.8 0.6 2.1E-05 31.8 5.0 32 123-154 19-50 (53)
81 1hjb_A Ccaat/enhancer binding 89.3 1.4 4.7E-05 33.0 7.1 47 105-154 28-74 (87)
82 2wt7_B Transcription factor MA 89.0 3.5 0.00012 31.0 9.2 63 92-154 17-86 (90)
83 1t2k_D Cyclic-AMP-dependent tr 88.5 2 6.8E-05 29.6 7.1 37 117-153 23-59 (61)
84 1ci6_A Transcription factor AT 87.7 2.5 8.5E-05 29.5 7.3 37 117-153 24-60 (63)
85 1gd2_E Transcription factor PA 87.4 2.2 7.5E-05 30.6 6.9 37 117-153 30-66 (70)
86 2wt7_A Proto-oncogene protein 87.1 2.7 9.1E-05 29.2 7.1 37 117-153 24-60 (63)
87 1gu4_A CAAT/enhancer binding p 87.1 1.4 4.8E-05 32.3 5.9 46 105-153 28-73 (78)
88 2jn6_A Protein CGL2762, transp 85.1 0.5 1.7E-05 34.8 2.6 44 58-104 3-46 (97)
89 1jnm_A Proto-oncogene C-JUN; B 83.5 1.9 6.4E-05 29.9 4.8 36 118-153 24-59 (62)
90 2dgc_A Protein (GCN4); basic d 82.7 2.5 8.5E-05 29.5 5.3 31 124-154 31-61 (63)
91 1gd2_E Transcription factor PA 82.4 2.3 7.7E-05 30.5 5.0 51 99-150 20-70 (70)
92 2glo_A Brinker CG9653-PA; prot 81.2 2.7 9.1E-05 28.1 4.9 46 57-103 2-47 (59)
93 1hlv_A CENP-B, major centromer 78.6 5.2 0.00018 30.5 6.4 50 56-108 3-52 (131)
94 1dh3_A Transcription factor CR 74.7 11 0.00039 25.4 6.5 32 123-154 22-53 (55)
95 1a93_B MAX protein, coiled coi 71.4 3.9 0.00013 25.3 3.1 27 123-149 7-33 (34)
96 1tc3_C Protein (TC3 transposas 69.7 11 0.00039 22.6 5.3 41 59-104 4-44 (51)
97 2elh_A CG11849-PA, LD40883P; s 69.7 9.8 0.00034 27.3 5.6 43 56-103 18-60 (87)
98 2yy0_A C-MYC-binding protein; 68.2 8.8 0.0003 25.9 4.7 24 130-153 19-42 (53)
99 1t2k_D Cyclic-AMP-dependent tr 68.1 18 0.00062 24.6 6.4 32 122-153 21-52 (61)
100 1go4_E MAD1 (mitotic arrest de 66.9 9.5 0.00032 29.2 5.1 32 123-154 12-43 (100)
101 2wuj_A Septum site-determining 66.4 5.5 0.00019 27.1 3.4 31 123-153 27-57 (57)
102 3hnw_A Uncharacterized protein 65.5 40 0.0014 26.9 8.9 43 113-155 86-128 (138)
103 3gpv_A Transcriptional regulat 65.3 32 0.0011 27.3 8.4 37 57-106 51-87 (148)
104 2jee_A YIIU; FTSZ, septum, coi 64.1 22 0.00075 26.1 6.4 38 116-153 27-71 (81)
105 3s4r_A Vimentin; alpha-helix, 64.0 42 0.0014 24.9 8.2 38 116-153 56-93 (93)
106 3gp4_A Transcriptional regulat 61.8 57 0.0019 25.7 10.7 37 57-106 37-73 (142)
107 2oxj_A Hybrid alpha/beta pepti 61.0 17 0.00059 22.3 4.5 28 127-154 5-32 (34)
108 1ci6_A Transcription factor AT 60.8 35 0.0012 23.5 6.8 31 122-152 22-52 (63)
109 3hug_A RNA polymerase sigma fa 60.0 26 0.00089 25.0 6.4 46 60-110 37-82 (92)
110 1jko_C HIN recombinase, DNA-in 59.6 4.7 0.00016 25.0 1.9 40 60-104 5-44 (52)
111 2wt7_A Proto-oncogene protein 59.5 39 0.0013 23.1 7.1 32 122-153 22-53 (63)
112 2o8x_A Probable RNA polymerase 58.0 15 0.00051 24.4 4.4 46 60-110 15-60 (70)
113 3m9b_A Proteasome-associated A 57.5 19 0.00063 31.9 6.0 39 113-151 58-96 (251)
114 1hjb_A Ccaat/enhancer binding 57.5 25 0.00086 26.0 5.9 36 119-154 32-67 (87)
115 1s7o_A Hypothetical UPF0122 pr 55.8 63 0.0022 24.3 8.8 47 60-111 22-68 (113)
116 3c3g_A Alpha/beta peptide with 54.4 29 0.001 21.1 4.7 27 128-154 5-31 (33)
117 1xsv_A Hypothetical UPF0122 pr 53.8 68 0.0023 24.1 8.4 47 60-111 25-71 (113)
118 2jee_A YIIU; FTSZ, septum, coi 52.7 61 0.0021 23.7 7.2 25 117-141 21-45 (81)
119 1dh3_A Transcription factor CR 52.1 20 0.00069 24.1 4.2 30 117-146 23-52 (55)
120 1kd8_B GABH BLL, GCN4 acid bas 51.7 34 0.0011 21.3 4.7 28 127-154 5-32 (36)
121 3m48_A General control protein 51.4 25 0.00085 21.5 4.0 27 128-154 5-31 (33)
122 3c3f_A Alpha/beta peptide with 51.3 32 0.0011 21.1 4.5 28 127-154 5-32 (34)
123 1p4w_A RCSB; solution structur 51.1 34 0.0011 25.3 5.8 47 58-110 32-78 (99)
124 3oja_A Leucine-rich immune mol 49.5 52 0.0018 30.6 8.2 46 113-158 425-470 (487)
125 3c57_A Two component transcrip 49.4 28 0.00097 25.2 5.1 46 60-111 27-72 (95)
126 3a2a_A Voltage-gated hydrogen 49.1 41 0.0014 22.9 5.3 41 115-155 10-50 (58)
127 3v86_A De novo design helix; c 48.7 19 0.00067 20.4 3.0 22 128-149 5-26 (27)
128 3ra3_A P1C; coiled coil domain 48.5 16 0.00055 20.9 2.7 21 133-153 3-23 (28)
129 3hnw_A Uncharacterized protein 48.1 75 0.0026 25.2 7.8 41 114-154 80-120 (138)
130 1fse_A GERE; helix-turn-helix 47.7 38 0.0013 22.5 5.2 47 59-111 10-56 (74)
131 1gu4_A CAAT/enhancer binding p 47.6 76 0.0026 22.9 7.9 36 119-154 32-67 (78)
132 3twe_A Alpha4H; unknown functi 47.3 29 0.00098 19.7 3.6 22 133-154 4-25 (27)
133 2rn7_A IS629 ORFA; helix, all 47.0 35 0.0012 24.9 5.3 46 58-103 4-52 (108)
134 3mzy_A RNA polymerase sigma-H 46.7 38 0.0013 25.6 5.7 45 60-110 109-153 (164)
135 1je8_A Nitrate/nitrite respons 46.5 43 0.0015 23.4 5.6 46 60-111 21-66 (82)
136 4dzn_A Coiled-coil peptide CC- 46.2 44 0.0015 19.8 4.5 26 126-151 5-30 (33)
137 1wt6_A Myotonin-protein kinase 46.0 82 0.0028 23.0 6.9 41 115-155 30-70 (81)
138 1deb_A APC protein, adenomatou 45.8 38 0.0013 22.7 4.6 29 125-153 5-33 (54)
139 2p7v_B Sigma-70, RNA polymeras 45.5 45 0.0015 22.2 5.3 50 60-110 5-54 (68)
140 1kd8_A GABH AIV, GCN4 acid bas 45.3 42 0.0014 20.8 4.4 29 127-155 5-33 (36)
141 2wt7_B Transcription factor MA 45.1 69 0.0024 23.8 6.6 50 100-149 37-88 (90)
142 3vmx_A Voltage-gated hydrogen 44.5 66 0.0023 21.3 6.4 40 116-155 4-43 (48)
143 1jnm_A Proto-oncogene C-JUN; B 44.2 72 0.0024 21.6 7.6 32 122-153 21-52 (62)
144 3mq7_A Bone marrow stromal ant 43.1 82 0.0028 24.6 6.9 60 93-152 41-100 (121)
145 1nkp_A C-MYC, MYC proto-oncoge 42.6 32 0.0011 25.2 4.4 29 121-149 57-85 (88)
146 1x3u_A Transcriptional regulat 42.3 42 0.0014 22.7 4.8 46 61-112 17-62 (79)
147 1iuf_A Centromere ABP1 protein 40.5 31 0.0011 27.0 4.4 52 55-106 6-61 (144)
148 1nlw_A MAD protein, MAX dimeri 40.3 50 0.0017 23.8 5.1 29 126-154 50-78 (80)
149 1nkp_B MAX protein, MYC proto- 40.0 50 0.0017 23.5 5.1 29 126-154 50-78 (83)
150 2bni_A General control protein 39.9 47 0.0016 20.4 4.0 27 128-154 6-32 (34)
151 3oja_B Anopheles plasmodium-re 39.8 48 0.0016 31.5 6.3 34 120-153 548-581 (597)
152 1ku3_A Sigma factor SIGA; heli 39.4 73 0.0025 21.4 5.7 50 60-110 10-59 (73)
153 3he5_A Synzip1; heterodimeric 39.0 75 0.0026 20.3 6.4 39 115-153 9-47 (49)
154 3lph_A Protein REV; helix-loop 37.6 38 0.0013 24.3 3.8 34 66-113 18-51 (72)
155 2hy6_A General control protein 37.4 71 0.0024 19.6 4.6 27 128-154 6-32 (34)
156 1rp3_A RNA polymerase sigma fa 37.1 44 0.0015 27.1 5.0 46 60-110 187-232 (239)
157 1tty_A Sigma-A, RNA polymerase 37.0 85 0.0029 22.0 5.9 51 60-111 18-68 (87)
158 1uo4_A General control protein 36.8 61 0.0021 19.9 4.2 27 128-154 6-32 (34)
159 2rnj_A Response regulator prot 36.4 42 0.0014 23.8 4.2 46 60-111 29-74 (91)
160 3oja_B Anopheles plasmodium-re 36.3 1.1E+02 0.0037 29.0 8.2 18 127-144 534-551 (597)
161 3w03_C DNA repair protein XRCC 36.2 44 0.0015 28.1 4.8 25 126-150 155-179 (184)
162 1go4_E MAD1 (mitotic arrest de 36.2 71 0.0024 24.2 5.5 34 116-149 12-45 (100)
163 1u78_A TC3 transposase, transp 34.8 65 0.0022 23.9 5.3 41 59-104 5-45 (141)
164 2oto_A M protein; helical coil 34.5 1.7E+02 0.0059 23.1 8.1 48 103-150 23-77 (155)
165 2vz4_A Tipal, HTH-type transcr 34.4 1.4E+02 0.0047 22.0 7.0 35 57-104 36-70 (108)
166 1q06_A Transcriptional regulat 33.7 1.6E+02 0.0055 22.6 8.5 36 58-106 36-71 (135)
167 4h22_A Leucine-rich repeat fli 33.6 1.6E+02 0.0054 22.5 7.3 49 107-155 35-83 (103)
168 3trt_A Vimentin; cytoskeleton, 33.6 1.2E+02 0.0041 21.0 7.5 51 95-150 26-76 (77)
169 1nlw_A MAD protein, MAX dimeri 33.2 74 0.0025 22.8 5.0 31 119-149 50-80 (80)
170 1nkp_B MAX protein, MYC proto- 33.0 43 0.0015 23.9 3.7 31 119-149 50-80 (83)
171 3ulq_B Transcriptional regulat 33.0 98 0.0033 22.2 5.8 46 58-109 27-72 (90)
172 2v71_A Nuclear distribution pr 32.3 1.9E+02 0.0066 24.2 8.1 19 135-153 93-111 (189)
173 1or7_A Sigma-24, RNA polymeras 32.1 70 0.0024 25.0 5.3 45 61-110 141-185 (194)
174 3i5g_B Myosin regulatory light 31.4 71 0.0024 24.6 5.1 41 56-96 5-50 (153)
175 3iv1_A Tumor susceptibility ge 31.3 1.5E+02 0.0051 21.5 7.8 49 105-153 14-69 (78)
176 1uii_A Geminin; human, DNA rep 31.2 1.4E+02 0.0048 21.9 6.2 26 126-151 49-74 (83)
177 2jpc_A SSRB; DNA binding prote 30.9 46 0.0016 21.3 3.3 27 85-111 17-43 (61)
178 3o0z_A RHO-associated protein 29.7 1.9E+02 0.0065 23.9 7.5 34 121-154 46-79 (168)
179 2fxo_A Myosin heavy chain, car 29.4 1.9E+02 0.0066 22.2 8.1 51 106-156 73-123 (129)
180 3bd1_A CRO protein; transcript 28.8 30 0.001 23.6 2.2 23 84-106 14-36 (79)
181 1p9i_A Cortexillin I/GCN4 hybr 28.8 84 0.0029 18.3 3.7 21 133-153 9-29 (31)
182 2x48_A CAG38821; archeal virus 28.5 60 0.0021 20.4 3.6 36 63-103 18-53 (55)
183 3tnu_B Keratin, type II cytosk 28.0 1.2E+02 0.0041 23.4 5.9 24 123-146 43-66 (129)
184 2xi8_A Putative transcription 28.0 24 0.00081 22.7 1.4 23 84-106 17-39 (66)
185 1gmj_A ATPase inhibitor; coile 27.6 1.8E+02 0.0062 21.3 6.4 26 129-154 50-75 (84)
186 2eqb_B RAB guanine nucleotide 27.4 83 0.0028 23.8 4.5 36 121-156 3-38 (97)
187 2r1j_L Repressor protein C2; p 27.4 25 0.00087 22.6 1.5 24 84-107 21-44 (68)
188 1t6f_A Geminin; coiled-coil, c 26.9 1.1E+02 0.0038 18.9 4.2 6 141-146 25-30 (37)
189 3jsv_C NF-kappa-B essential mo 26.8 1.3E+02 0.0044 22.6 5.4 37 117-153 41-77 (94)
190 2v4h_A NF-kappa-B essential mo 26.8 2.2E+02 0.0074 21.9 7.9 36 117-152 70-105 (110)
191 2w6a_A ARF GTPase-activating p 26.7 1.6E+02 0.0054 20.3 6.1 38 117-154 14-51 (63)
192 3pvv_A Chromosomal replication 26.7 1.2E+02 0.004 22.7 5.3 21 135-155 77-97 (101)
193 2v4h_A NF-kappa-B essential mo 26.6 2.2E+02 0.0075 21.9 7.1 39 116-154 62-100 (110)
194 3s9g_A Protein hexim1; cyclin 26.5 1.4E+02 0.0049 22.6 5.6 19 127-145 69-87 (104)
195 3m91_A Proteasome-associated A 26.3 1.4E+02 0.0049 19.7 6.2 36 114-149 14-49 (51)
196 4b4t_K 26S protease regulatory 26.3 90 0.0031 29.2 5.6 41 109-149 49-89 (428)
197 2ve7_C Kinetochore protein NUF 26.0 39 0.0013 29.5 2.9 39 117-155 142-180 (250)
198 3m9b_A Proteasome-associated A 25.7 70 0.0024 28.2 4.4 40 115-154 53-92 (251)
199 3hh0_A Transcriptional regulat 25.6 1.7E+02 0.0058 22.9 6.5 35 57-104 39-73 (146)
200 2a6c_A Helix-turn-helix motif; 25.6 49 0.0017 22.9 2.8 23 84-106 34-56 (83)
201 3a5t_A Transcription factor MA 25.5 19 0.00063 27.8 0.6 60 92-151 27-93 (107)
202 3q4f_C DNA repair protein XRCC 25.4 1.2E+02 0.0042 25.4 5.6 31 122-152 153-183 (186)
203 3w03_C DNA repair protein XRCC 25.4 1.2E+02 0.0041 25.4 5.6 38 117-154 139-176 (184)
204 3bs3_A Putative DNA-binding pr 25.3 29 0.001 23.0 1.6 23 84-106 26-48 (76)
205 1zug_A Phage 434 CRO protein; 25.0 28 0.00097 22.7 1.4 24 84-107 19-42 (71)
206 3mq7_A Bone marrow stromal ant 24.9 2.5E+02 0.0084 21.9 7.2 33 121-153 76-108 (121)
207 2lv7_A Calcium-binding protein 24.9 1.1E+02 0.0036 22.1 4.8 47 57-103 26-79 (100)
208 3b7h_A Prophage LP1 protein 11 24.8 39 0.0013 22.5 2.2 22 85-106 24-45 (78)
209 1pdn_C Protein (PRD paired); p 24.5 1.9E+02 0.0065 20.6 6.2 45 58-107 15-59 (128)
210 2b5a_A C.BCLI; helix-turn-heli 24.3 64 0.0022 21.3 3.2 23 84-106 26-48 (77)
211 1r8d_A Transcription activator 24.3 2.1E+02 0.0072 20.9 7.1 34 58-104 38-71 (109)
212 1fi6_A EH domain protein REPS1 24.2 96 0.0033 21.7 4.3 43 61-103 3-50 (92)
213 2wuj_A Septum site-determining 24.1 39 0.0013 22.7 2.0 33 113-145 24-56 (57)
214 2q0o_A Probable transcriptiona 24.1 1.3E+02 0.0044 24.9 5.8 46 59-110 174-219 (236)
215 3tnu_A Keratin, type I cytoske 23.9 1.3E+02 0.0043 23.4 5.3 19 126-144 48-66 (131)
216 2wq1_A General control protein 23.7 1.3E+02 0.0044 18.3 4.6 27 128-154 5-31 (33)
217 3ilw_A DNA gyrase subunit A; D 23.7 3.7E+02 0.013 25.7 9.3 74 81-154 385-461 (470)
218 1uii_A Geminin; human, DNA rep 23.6 2.2E+02 0.0075 20.8 6.8 24 130-153 46-69 (83)
219 3s9g_A Protein hexim1; cyclin 23.5 2.4E+02 0.0083 21.3 6.8 22 130-151 65-86 (104)
220 1nkp_A C-MYC, MYC proto-oncoge 23.4 1.4E+02 0.0048 21.6 5.1 31 124-154 53-83 (88)
221 1adr_A P22 C2 repressor; trans 23.4 33 0.0011 22.7 1.5 23 84-106 21-43 (76)
222 1u78_A TC3 transposase, transp 22.9 1.4E+02 0.0047 22.0 5.2 44 59-106 59-104 (141)
223 3u06_A Protein claret segregat 22.9 1.1E+02 0.0038 28.5 5.5 20 133-152 20-39 (412)
224 3oa7_A Head morphogenesis prot 22.8 1.8E+02 0.006 24.8 6.1 32 123-154 37-68 (206)
225 2zvf_A Alanyl-tRNA synthetase; 22.5 1.2E+02 0.004 24.0 5.0 36 119-154 21-56 (171)
226 1wle_A Seryl-tRNA synthetase; 22.2 4.1E+02 0.014 25.3 9.5 21 134-154 120-140 (501)
227 3qq6_A HTH-type transcriptiona 21.9 50 0.0017 22.6 2.2 19 86-104 28-46 (78)
228 2pmy_A RAS and EF-hand domain- 21.8 73 0.0025 22.0 3.2 44 60-103 20-68 (91)
229 1k78_A Paired box protein PAX5 21.5 2.2E+02 0.0077 21.4 6.3 42 59-105 31-72 (149)
230 3omt_A Uncharacterized protein 21.3 39 0.0013 22.5 1.5 23 84-106 24-46 (73)
231 1l3l_A Transcriptional activat 21.3 1.9E+02 0.0065 23.8 6.3 47 58-110 171-217 (234)
232 3qne_A Seryl-tRNA synthetase, 21.1 4.3E+02 0.015 25.2 9.3 28 127-154 75-102 (485)
233 1r69_A Repressor protein CI; g 21.0 38 0.0013 21.8 1.4 24 84-107 17-40 (69)
234 2cqq_A RSGI RUH-037, DNAJ homo 21.0 2.2E+02 0.0074 19.8 6.1 44 57-100 7-50 (72)
235 2k27_A Paired box protein PAX- 20.8 1.3E+02 0.0044 23.2 4.8 47 52-103 17-63 (159)
236 2dq0_A Seryl-tRNA synthetase; 20.7 4E+02 0.014 25.0 9.0 27 127-153 73-99 (455)
237 2j5u_A MREC protein; bacterial 20.6 62 0.0021 28.1 3.1 38 116-153 19-59 (255)
238 1y7y_A C.AHDI; helix-turn-heli 20.6 41 0.0014 22.0 1.5 23 84-106 29-51 (74)
239 3ghg_A Fibrinogen alpha chain; 20.3 1.6E+02 0.0055 28.7 6.0 17 95-111 80-96 (562)
240 2wiu_B HTH-type transcriptiona 20.1 58 0.002 22.2 2.3 23 84-106 28-50 (88)
No 1
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.76 E-value=5.4e-19 Score=126.09 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=53.2
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|+.||..|+.+||..|..++||+..++..||..+||++++|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3466777899999999999999999999999999999999999999999999999999853
No 2
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=1.1e-18 Score=124.93 Aligned_cols=60 Identities=35% Similarity=0.563 Sum_probs=55.1
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 356777889999999999999999999999999999999999999999999999999985
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=126.78 Aligned_cols=62 Identities=27% Similarity=0.494 Sum_probs=57.5
Q ss_pred cccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 52 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 52 ~~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34567777899999999999999999999999999999999999999999999999999854
No 4
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=129.65 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=56.5
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
...+|++||.+|+.+|+..|..++||+..+|++||..+||+++||+|||||||+|+|+.+
T Consensus 3 ~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 346778899999999999999999999999999999999999999999999999999865
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.9e-18 Score=128.45 Aligned_cols=63 Identities=33% Similarity=0.551 Sum_probs=58.1
Q ss_pred cccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHH
Q 024675 52 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 114 (264)
Q Consensus 52 ~~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~ 114 (264)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 345667778999999999999999999999999999999999999999999999999999763
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=127.50 Aligned_cols=62 Identities=29% Similarity=0.563 Sum_probs=57.3
Q ss_pred cccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 52 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 52 ~~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34566777899999999999999999999999999999999999999999999999999854
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.75 E-value=2e-18 Score=128.45 Aligned_cols=64 Identities=28% Similarity=0.478 Sum_probs=58.1
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHHHHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERD 117 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~e~~ 117 (264)
.+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+...+..
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 4455667999999999999999999999999999999999999999999999999999775543
No 8
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.3e-18 Score=125.78 Aligned_cols=61 Identities=38% Similarity=0.615 Sum_probs=57.0
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4566777899999999999999999999999999999999999999999999999999864
No 9
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.9e-18 Score=120.50 Aligned_cols=57 Identities=32% Similarity=0.565 Sum_probs=54.4
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 55 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
+++|+.||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356778999999999999999999999999999999999999999999999999986
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.74 E-value=2.3e-18 Score=122.39 Aligned_cols=58 Identities=31% Similarity=0.654 Sum_probs=52.8
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.+++|+.||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4567778999999999999999999999999999999999999999999999999987
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=128.19 Aligned_cols=61 Identities=23% Similarity=0.507 Sum_probs=57.4
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 4566777899999999999999999999999999999999999999999999999999865
No 12
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=129.78 Aligned_cols=61 Identities=34% Similarity=0.554 Sum_probs=56.2
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3455666799999999999999999999999999999999999999999999999999853
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=125.71 Aligned_cols=62 Identities=29% Similarity=0.463 Sum_probs=57.3
Q ss_pred cccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 52 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 52 ~~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566777899999999999999999999999999999999999999999999999999854
No 14
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-19 Score=130.48 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=56.7
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 4556667799999999999999999999999999999999999999999999999999854
No 15
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=4.7e-18 Score=123.53 Aligned_cols=60 Identities=30% Similarity=0.519 Sum_probs=56.8
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
.+++|+.||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 456777899999999999999999999999999999999999999999999999999865
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.6e-18 Score=128.55 Aligned_cols=61 Identities=23% Similarity=0.413 Sum_probs=57.2
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 4566777899999999999999999999999999999999999999999999999999865
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.74 E-value=6.2e-18 Score=125.73 Aligned_cols=61 Identities=36% Similarity=0.560 Sum_probs=57.0
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 3556677899999999999999999999999999999999999999999999999999865
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=125.30 Aligned_cols=61 Identities=23% Similarity=0.485 Sum_probs=56.9
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4566777899999999999999999999999999999999999999999999999999853
No 19
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.74 E-value=2e-18 Score=125.44 Aligned_cols=61 Identities=25% Similarity=0.481 Sum_probs=57.3
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4567777899999999999999999999999999999999999999999999999999865
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.73 E-value=5.5e-18 Score=127.08 Aligned_cols=61 Identities=31% Similarity=0.542 Sum_probs=56.6
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3455666799999999999999999999999999999999999999999999999999865
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=126.02 Aligned_cols=61 Identities=28% Similarity=0.531 Sum_probs=56.7
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4566677899999999999999999999999999999999999999999999999999853
No 22
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=5.8e-18 Score=124.28 Aligned_cols=59 Identities=34% Similarity=0.524 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 55 TEKKRRLTVDQVKALEKNFEV-DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
.++|++||..|+.+||..|.. ++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 457788999999999999996 99999999999999999999999999999999999865
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=2.4e-18 Score=132.68 Aligned_cols=64 Identities=30% Similarity=0.489 Sum_probs=58.3
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELER 116 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~e~ 116 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+...+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 3455666799999999999999999999999999999999999999999999999999976544
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=5.3e-18 Score=120.15 Aligned_cols=58 Identities=38% Similarity=0.575 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 55 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
+++|++||..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4677889999999999999999999999999999999999999999999999999974
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.73 E-value=5.2e-18 Score=123.39 Aligned_cols=59 Identities=36% Similarity=0.606 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 55 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+++|++||..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 56677899999999999999999999999999999999999999999999999999864
No 26
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.73 E-value=4.6e-18 Score=129.49 Aligned_cols=61 Identities=34% Similarity=0.601 Sum_probs=54.3
Q ss_pred cccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 52 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 52 ~~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4456777889999999999999999999999999999999999999999999999999985
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=3.9e-18 Score=123.07 Aligned_cols=60 Identities=32% Similarity=0.524 Sum_probs=56.4
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
.+++|+.||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 456777899999999999999999999999999999999999999999999999999854
No 28
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=129.37 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=56.6
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|+.||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4556667799999999999999999999999999999999999999999999999999854
No 29
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=8.3e-18 Score=117.71 Aligned_cols=57 Identities=32% Similarity=0.497 Sum_probs=53.6
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.+++|++|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356677899999999999999999999999999999999999999999999999986
No 30
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.1e-17 Score=123.27 Aligned_cols=59 Identities=32% Similarity=0.477 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 55 TEKKRRLTVDQVKALEKNFEV-DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+++|++||..|+.+||..|.. ++||+..++..||..+||+++||+|||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467788999999999999995 99999999999999999999999999999999999865
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.72 E-value=7.3e-18 Score=124.21 Aligned_cols=61 Identities=28% Similarity=0.534 Sum_probs=56.8
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3566777899999999999999999999999999999999999999999999999999853
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=9e-18 Score=122.03 Aligned_cols=59 Identities=29% Similarity=0.549 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 55 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 56677899999999999999999999999999999999999999999999999999865
No 33
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=125.47 Aligned_cols=60 Identities=25% Similarity=0.447 Sum_probs=56.4
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
.++||++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 346777899999999999999999999999999999999999999999999999999864
No 34
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=117.45 Aligned_cols=54 Identities=30% Similarity=0.532 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 59 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 59 rr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
+.||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 468999999999999999999999999999999999999999999999999985
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.72 E-value=6.4e-18 Score=127.00 Aligned_cols=61 Identities=36% Similarity=0.583 Sum_probs=54.0
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4566777899999999999999999999999999999999999999999999999999854
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=8.1e-18 Score=119.22 Aligned_cols=57 Identities=35% Similarity=0.528 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
.|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999999854
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.72 E-value=9.3e-18 Score=121.42 Aligned_cols=60 Identities=35% Similarity=0.528 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHH
Q 024675 55 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 114 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~ 114 (264)
+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567778999999999999999999999999999999999999999999999999998653
No 38
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=8.4e-18 Score=130.18 Aligned_cols=63 Identities=30% Similarity=0.404 Sum_probs=56.7
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELE 115 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~e 115 (264)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 455677789999999999999999999999999999999999999999999999999997643
No 39
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=4.1e-18 Score=128.06 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=54.7
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEV----DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~----~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
..+++|+.||..|+..||..|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34566667999999999999999 999999999999999999999999999999999885
No 40
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=1e-17 Score=118.85 Aligned_cols=57 Identities=30% Similarity=0.520 Sum_probs=48.6
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.+++|++|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 455667799999999999999999999999999999999999999999999999986
No 41
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.8e-18 Score=125.95 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=56.1
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVD----NKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~----~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|+.||..|+.+||..|..+ +||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 345566679999999999999999 9999999999999999999999999999999999854
No 42
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=121.73 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=56.5
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..++.|++|+..|+.+||..|..++||+..++..||..|||++.+|+|||||||+|+|+..
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 3456667799999999999999999999999999999999999999999999999999854
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=121.73 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=56.6
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
.++.|+.||..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 456778899999999999999999999999999999999999999999999999999864
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.9e-17 Score=127.03 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 56 rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
++.++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 4555899999999999999999999999999999999999999999999999999865
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2e-17 Score=128.15 Aligned_cols=62 Identities=34% Similarity=0.614 Sum_probs=55.0
Q ss_pred cccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 52 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 52 ~~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34566777899999999999999999999999999999999999999999999999999865
No 46
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.70 E-value=3.2e-17 Score=115.99 Aligned_cols=56 Identities=29% Similarity=0.413 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 57 KKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
++++|+..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999873
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=2.4e-17 Score=121.19 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHHH
Q 024675 55 TEKKRRLTVDQVKALEKNF---EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELE 115 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~e 115 (264)
+++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5677889999999999999 899999999999999999999999999999999999986543
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=122.31 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=56.1
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+.+.|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 445678899999999999999999999999999999999999999999999999999854
No 49
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=6.7e-18 Score=127.05 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=53.5
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
..+|+|+.||..|+..|| .|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 355666679999999999 7999 999999999999999999999999999999999885
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.6e-17 Score=121.00 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=56.1
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 45566677999999999999976 99999999999999999999999999999999999864
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1e-17 Score=123.48 Aligned_cols=59 Identities=27% Similarity=0.413 Sum_probs=55.0
Q ss_pred cCCCCCCCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 54 ATEKKRRLTVDQVKALEKNF-EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
+.+++++++..|+.+||..| ..++||+..++.+||..|||+++||+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 34567789999999999999 999999999999999999999999999999999999974
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=2.6e-17 Score=117.97 Aligned_cols=58 Identities=24% Similarity=0.419 Sum_probs=55.0
Q ss_pred cCCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 54 ATEKKRRLTVDQVKALEKNF---EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
++++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46677889999999999999 89999999999999999999999999999999999986
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=7.8e-17 Score=122.12 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 55 TEKKRRLTVDQVKALEKNF---EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 5677889999999999999 8999999999999999999999999999999999999865
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=123.14 Aligned_cols=58 Identities=33% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 56 rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
.+++++|..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4556699999999999999999999999999999999999999999999999999854
No 55
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=8.2e-17 Score=121.44 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHHH
Q 024675 55 TEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELE 115 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~e 115 (264)
++++++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 345667999999999999999 9999999999999999999999999999999999986543
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.3e-16 Score=123.20 Aligned_cols=61 Identities=15% Similarity=0.342 Sum_probs=56.6
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------CChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELG---------------LQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lg---------------L~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|+.|+..|+.+||..|..++||+..+|+.||..|| |++.+|++||||||+|+|++.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 3455666799999999999999999999999999999999 999999999999999999865
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.66 E-value=1.6e-16 Score=120.64 Aligned_cols=59 Identities=27% Similarity=0.387 Sum_probs=54.6
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
..+++|++|+..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34556677999999999999999 999999999999999999999999999999999973
No 58
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=115.03 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 61 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 61 ~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
-|.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 58999999999999999999999999999999999999999999999999864
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=119.91 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=55.7
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 114 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~ 114 (264)
..+++|++|+..|+.+|+..|.. ++||+..+|..||..+||+++||++||||||+|+|+..+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 34556667999999999999987 599999999999999999999999999999999998653
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=9.4e-17 Score=117.63 Aligned_cols=55 Identities=36% Similarity=0.617 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 114 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~ 114 (264)
.+|..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++.
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 5899999999999999999999999999999999999999999999999998653
No 61
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=114.12 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=51.2
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.+...+..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3445789999999999999999999999999999999999999999999999876
No 62
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=9.7e-17 Score=115.96 Aligned_cols=51 Identities=29% Similarity=0.472 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 62 TVDQVKALEKNF-EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 62 t~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
.+.|+.+||..| ..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 456899999999 679999999999999999999999999999999999863
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=2e-16 Score=131.34 Aligned_cols=60 Identities=30% Similarity=0.551 Sum_probs=54.2
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
..+++|++||..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345556679999999999999999999999999999999999999999999999999984
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.62 E-value=3.8e-16 Score=130.04 Aligned_cols=59 Identities=27% Similarity=0.488 Sum_probs=54.6
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
..+++|++|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34455566999999999999999999999999999999999999999999999999986
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.62 E-value=3.4e-16 Score=131.65 Aligned_cols=60 Identities=30% Similarity=0.478 Sum_probs=53.8
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
..+++|+.||..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 445666679999999999999999999999999999999999999999999999999974
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=8e-16 Score=111.97 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=52.9
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 53 QATEKKRRLTVDQVKALEKNFEV-DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.++|.|+.|+.+|+.+|+..|+. ++||+...|..||.+|||++++|+|||||||--.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 35666777999999999999999 99999999999999999999999999999997543
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=119.15 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=56.4
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh---------------------CCChHHHhhhhHHHHHHhhH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEEL---------------------GLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~l---------------------gL~~rqVqvWFQNRRak~Kr 111 (264)
..+++|+.|++.|+.+||..|..++||+..+|++||..| +|++.+|+|||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 456667779999999999999999999999999999999 79999999999999999998
Q ss_pred HH
Q 024675 112 KE 113 (264)
Q Consensus 112 k~ 113 (264)
++
T Consensus 85 ~~ 86 (102)
T 2da6_A 85 RQ 86 (102)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.61 E-value=5.1e-16 Score=131.27 Aligned_cols=61 Identities=30% Similarity=0.403 Sum_probs=51.9
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+.+++|++|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+|+..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 3455566799999999999999999999999999999999999999999999999999865
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.60 E-value=1e-15 Score=128.14 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=55.3
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
..+++|++|+..|+..||..|..++||+..++..||..+||+++||+|||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 455566679999999999999999999999999999999999999999999999999973
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=9.6e-16 Score=111.28 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHHHHHH
Q 024675 60 RLTVDQVKALEKNFE---VDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDY 118 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~---~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~e~~~ 118 (264)
+|+.+|+.+|+..|. .++||+..++..||..+||+++||++||||||+|+|+..+++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 799999999999999 99999999999999999999999999999999999997766543
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=1.7e-15 Score=127.49 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=54.0
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 53 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 53 ~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
..+++|+.||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 3456677799999999999999999999999999999999999999999999999999854
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.57 E-value=1.4e-15 Score=118.68 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=53.5
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------hC---CChHHHhhhhHHHHHHhhHH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEE------------------LG---LQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~------------------lg---L~~rqVqvWFQNRRak~Krk 112 (264)
.+++|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++|++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 4455667999999999999999999999999999999 88 99999999999999999886
Q ss_pred H
Q 024675 113 E 113 (264)
Q Consensus 113 ~ 113 (264)
+
T Consensus 89 ~ 89 (99)
T 1lfb_A 89 H 89 (99)
T ss_dssp C
T ss_pred c
Confidence 5
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=99.12 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHH
Q 024675 63 VDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRAR 108 (264)
Q Consensus 63 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak 108 (264)
.+|+.+|+..|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.39 E-value=6.4e-13 Score=101.73 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHHHH
Q 024675 60 RLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELE 115 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~~e 115 (264)
-|+..++.+|+.+|.. ++||+..+|.+||..+||++.||++||+|+|+|+++..++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 4899999999999987 9999999999999999999999999999999999986533
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.35 E-value=3.5e-13 Score=116.89 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=52.1
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CChHHHhhhhHHHHHHhhH
Q 024675 54 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELG---------------------LQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 54 ~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lg---------------------L~~rqVqvWFQNRRak~Kr 111 (264)
.+|+|+.|+..|+.+||..|..++||+...|++||..|+ |++.+|++||||||+++|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 345555699999999999999999999999999999999 9999999999999999875
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.25 E-value=3.3e-12 Score=118.70 Aligned_cols=55 Identities=29% Similarity=0.503 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 56 rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
+.++.++..|+..||+.|..++||+..+|.+||.++||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3455699999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=108.84 Aligned_cols=55 Identities=16% Similarity=0.313 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CChHHHhhhhHHHHHHh
Q 024675 55 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELG---------------------LQPRQIAVWFQNRRARL 109 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lg---------------------L~~rqVqvWFQNRRak~ 109 (264)
+|.|..|++.|+.+|+..|..++||+..+|++||..+| |++.+|++||||||++.
T Consensus 143 RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 143 RRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 34444599999999999999999999999999999998 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.88 E-value=7.1e-11 Score=76.12 Aligned_cols=27 Identities=37% Similarity=0.794 Sum_probs=22.8
Q ss_pred HHHhhhhHHHHHHhhHHHHHHHHhhHH
Q 024675 96 RQIAVWFQNRRARLKSKELERDYGLLK 122 (264)
Q Consensus 96 rqVqvWFQNRRak~Krk~~e~~~~~lk 122 (264)
+||+|||||||||||+.+.++.++.++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 589999999999999998877665544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.31 E-value=0.058 Score=39.01 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 62 TVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 62 t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
++.-...|+..|...+.+.......|+.+.+|+..||+-||--
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3334578999999999999999999999999999999999954
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.83 E-value=0.6 Score=31.76 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=26.9
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 123 ANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 123 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
..+++|+.++..|+..++.|.+++.+|+++|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888888888888888888875
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.28 E-value=1.4 Score=33.02 Aligned_cols=47 Identities=26% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 105 RRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 105 RRak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
||.|.|++..+ ..+......|..+|..|+.+.+.|..|+..|+.-+-
T Consensus 28 rrSR~krk~r~---~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 28 RKSRDKAKMRN---LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554433 344556677778888888888888888888887775
No 82
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=88.96 E-value=3.5 Score=31.00 Aligned_cols=63 Identities=21% Similarity=0.132 Sum_probs=45.0
Q ss_pred CCChHHHhhhhHHHHHHh-------hHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 92 GLQPRQIAVWFQNRRARL-------KSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 92 gL~~rqVqvWFQNRRak~-------Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
||+..+|..|=|-||+-. -+.....+...|......|..+.+.|..|+..+..|+..++.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666321 122223455777778888888888888888888888888888763
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.50 E-value=2 Score=29.57 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=25.8
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
....|....+.|..++..|..+...|+.|+..|+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666667777777777777777777777777654
No 84
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.69 E-value=2.5 Score=29.46 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=26.2
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
....|......|..++..|..+...|+.|+..|+.-|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777777777655
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.45 E-value=2.2 Score=30.61 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=19.8
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
....|......|...+..+..+|+.|+.++..|...+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555566666666655555544
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.14 E-value=2.7 Score=29.22 Aligned_cols=37 Identities=30% Similarity=0.212 Sum_probs=25.2
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
....|....+.|..++..|..+...|..|+..|+..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777777776655
No 87
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.11 E-value=1.4 Score=32.27 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 105 RRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 105 RRak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
+|.+.|++..+. .+......|..+|..|+.+.+.|..|+..|+.-|
T Consensus 28 krSR~krk~r~~---e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544333 3344556666677777777777777777666544
No 88
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.13 E-value=0.5 Score=34.77 Aligned_cols=44 Identities=11% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 58 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
|++++.++....-..+.... .....++|..+||+...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 45688887765555553220 123568999999999999999853
No 89
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=83.47 E-value=1.9 Score=29.86 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=18.1
Q ss_pred HhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 118 YGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 118 ~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
...|......|..++..|..+...|..|+..|+..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555443
No 90
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.68 E-value=2.5 Score=29.54 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=20.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 124 NYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 124 ~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
....|......|..+|..|..++..|+..++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666667777888888888888877664
No 91
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=82.42 E-value=2.3 Score=30.55 Aligned_cols=51 Identities=31% Similarity=0.326 Sum_probs=37.1
Q ss_pred hhhhHHHHHHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024675 99 AVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELK 150 (264)
Q Consensus 99 qvWFQNRRak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~ 150 (264)
+.=|.-|+. ..-+.++.....|...+..+..++..|+.++..|..|+..|+
T Consensus 20 QRafReRK~-~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 20 QRAFRKRKE-DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344554433 334566777788888888889999999999999999988764
No 92
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=81.22 E-value=2.7 Score=28.08 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQ 103 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQ 103 (264)
++++++.+....+...+... ........++|..+||++..|..|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 35578888776664444432 22122356899999999999999964
No 93
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.59 E-value=5.2 Score=30.45 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHH
Q 024675 56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRAR 108 (264)
Q Consensus 56 rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak 108 (264)
++|+++|.++...+-..+.....+. ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3567899999877777775444443 2368999999999999999776653
No 94
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.73 E-value=11 Score=25.36 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=23.6
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 123 ANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 123 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
...+.|......|..+|..|..++..|+..++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566667777888888888888888876553
No 95
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=71.38 E-value=3.9 Score=25.34 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=19.9
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 123 ANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 123 ~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
.-+.+...+.+.|+++|..|.++++.|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 334556778888888888888887655
No 96
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=69.73 E-value=11 Score=22.62 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 59 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 59 rr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
..++..+...+...+... . ...++|+.+|++..-|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g--~---s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN--V---SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHhh
Confidence 357777765555555432 2 2557899999999999999853
No 97
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=69.67 E-value=9.8 Score=27.28 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 024675 56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQ 103 (264)
Q Consensus 56 rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQ 103 (264)
+++++++.++....-..+... .-..+||+.+|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 345579998865555555422 1256889999999999999974
No 98
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.22 E-value=8.8 Score=25.87 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 130 LDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 130 ~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
.+++.|+.||+.|+.++..|++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444
No 99
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.10 E-value=18 Score=24.56 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 122 KANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 122 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
+.....|....+.|..+|..|..++..|+..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666655544
No 100
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.87 E-value=9.5 Score=29.17 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=27.1
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 123 ANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 123 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
..+..|+.+.+.|..|++.|++++..|+.+|-
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888889999999999999999988884
No 101
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.43 E-value=5.5 Score=27.13 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=19.0
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 123 ANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 123 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
...+.+..+++.+..+|..|+.++.+|+++|
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566777778888888888887777654
No 102
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.53 E-value=40 Score=26.89 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=26.0
Q ss_pred HHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 024675 113 ELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 113 ~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 155 (264)
...++...||.....++..++.+.++++.|++++..|+.++..
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666666666665543
No 103
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=65.35 E-value=32 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHH
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..|.|+..++..|.. +.. .+.+|++-..|+..+...+
T Consensus 51 g~R~Y~~~dl~~l~~------------I~~-lr~~G~sL~eIk~~l~~~~ 87 (148)
T 3gpv_A 51 GDRIFNEEALKYLEM------------ILC-LKNTGMPIQKIKQFIDWSM 87 (148)
T ss_dssp CCEEBCHHHHHHHHH------------HHH-HHTTTCCHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHH------------HHH-HHHcCCCHHHHHHHHHhhh
Confidence 345699999988842 333 4788999999998887544
No 104
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.09 E-value=22 Score=26.13 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=17.1
Q ss_pred HHHhhHHHhhHHHHHHhHH-------HHHHHHHHHHHHHHHHHHH
Q 024675 116 RDYGLLKANYDALRLDYNN-------LQQENEALTAELRELKAKL 153 (264)
Q Consensus 116 ~~~~~lk~~~~~l~~~~~~-------l~~en~~l~~e~~~l~~~l 153 (264)
.+.+.||..+..|..++.. |..+|+.|+.|...-+.++
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444444 4444444444444333333
No 105
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.01 E-value=42 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=23.2
Q ss_pred HHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 116 RDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 116 ~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
.....|+...+.+..++..+..+.+.|++++.+++.+|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455555666666666666666666666666666553
No 106
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=61.84 E-value=57 Score=25.68 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHH
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..|.|+..++..|.. +.. .+.+|++-..|+..+....
T Consensus 37 g~R~Y~~~dl~~l~~------------I~~-lr~~G~sL~eIk~~l~~~~ 73 (142)
T 3gp4_A 37 GVRKFGAEDLRWILF------------TRQ-MRRAGLSIEALIDYLALFR 73 (142)
T ss_dssp SCBCBCHHHHHHHHH------------HHH-HHHTTCCHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHH------------HHH-HHHcCCCHHHHHHHHHHHh
Confidence 346699999998853 333 4788999999988776543
No 107
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=60.97 E-value=17 Score=22.31 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 127 ALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
.|....+.|..+|..|..|+.+|++-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3455667788899999999999988764
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.75 E-value=35 Score=23.45 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=14.8
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024675 122 KANYDALRLDYNNLQQENEALTAELRELKAK 152 (264)
Q Consensus 122 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~ 152 (264)
+.....|..+.+.|..+|..|..++..|+..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555444443
No 109
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=59.97 E-value=26 Score=24.96 Aligned_cols=46 Identities=11% Similarity=0.288 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.++..+..+|.-.|-... .-.++|..+|++...|+.+...-|.+.|
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 488888888887664332 3568999999999999988765554444
No 110
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=59.58 E-value=4.7 Score=24.98 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
.++.++...+...+... . ...+||..+|++..-|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 45666655555555432 2 3568999999999999999854
No 111
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.49 E-value=39 Score=23.08 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 122 KANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 122 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
+.....|..+.+.|..+|..|..++..|+..+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666777777777777776666654
No 112
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.96 E-value=15 Score=24.35 Aligned_cols=46 Identities=24% Similarity=0.086 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.+++.+..+|...|-.. ..-.++|..+|++...|+.+...-+.+-+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888888888776433 23468999999999999988765544443
No 113
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.51 E-value=19 Score=31.91 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024675 113 ELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA 151 (264)
Q Consensus 113 ~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~ 151 (264)
.++++...|...++.|......++++...|++|+++|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555666666666777777777777777777666654
No 114
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=57.47 E-value=25 Score=26.03 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=24.8
Q ss_pred hhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 119 GLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 119 ~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+.-+.....+......|..+|..|+.++..|+..+.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666777777888888888777777664
No 115
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.83 E-value=63 Score=24.35 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.+++.+..++.-.|.... .-.++|..+|++...|+.|...-|.+-++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887765432 24689999999999999998766655544
No 116
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=54.39 E-value=29 Score=21.15 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 128 LRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 128 l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
|....+.|..+|..|..|+.+|++-|.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 445567788899999999999998764
No 117
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=53.77 E-value=68 Score=24.06 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.+++.+..+|.-.|-... .-.++|..+|++...|+.+...-|.+-+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887654332 34689999999999999988766655554
No 118
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.69 E-value=61 Score=23.71 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=13.3
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEA 141 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~ 141 (264)
-...|+-..+.|+..+..|..+++.
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555
No 119
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.10 E-value=20 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.091 Sum_probs=18.8
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAEL 146 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~ 146 (264)
....|......|..++..|..++..|+.++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556667777777777777666543
No 120
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.68 E-value=34 Score=21.27 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 127 ALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
.|....+.|..+|..|..|+.+|++.+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3555667788889999999999998875
No 121
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.44 E-value=25 Score=21.48 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 128 LRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 128 l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
|....+.|..+|..|..|+.+|++-+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 445567788899999999999988664
No 122
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=51.27 E-value=32 Score=21.09 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 127 ALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
.|....+.|..+|..|..|+.+|++-|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3455567788899999999999998764
No 123
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=51.06 E-value=34 Score=25.34 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 58 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
...+++.+..+|.-.+.-- .-.++|..||+++.-|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4569999999997755321 2368999999999999998875554443
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.54 E-value=52 Score=30.59 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024675 113 ELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENE 158 (264)
Q Consensus 113 ~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~~~~ 158 (264)
+.+.+.+.++...+....+.+.+++++++++.++.++..++.+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 3444555666677777777888888888888888888877765443
No 125
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=49.36 E-value=28 Score=25.16 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.++..+..+|.-.+.- .+ ..++|..+|++...|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g---~s---~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG---LT---NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTT---CC---HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcC---CC---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5899999999875332 22 3689999999999999988766655554
No 126
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=49.07 E-value=41 Score=22.92 Aligned_cols=41 Identities=24% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 024675 115 ERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 115 e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 155 (264)
++....||..+..|-.....|+...-...+|+.+|.+-|.+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888888888888888888887764
No 127
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=48.69 E-value=19 Score=20.44 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=13.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 024675 128 LRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 128 l~~~~~~l~~en~~l~~e~~~l 149 (264)
|+.+...|+-+...|+.|++.|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4455566666666666666655
No 128
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.52 E-value=16 Score=20.95 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024675 133 NNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 133 ~~l~~en~~l~~e~~~l~~~l 153 (264)
+.|.-+|+.|.+.+..|+.++
T Consensus 3 dalefendaleqkiaalkqki 23 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHH
Confidence 345555666666666665554
No 129
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.12 E-value=75 Score=25.23 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 114 LERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 114 ~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
++.+.+.+......|+.+...++.+.+.+..++.+|+.++.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555544444443
No 130
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.66 E-value=38 Score=22.49 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 59 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 59 rr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
..+++.+..+|...+. .+ ...++|..+|++...|..+..+-+.+.+.
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4589999999987432 11 34579999999999999888765554443
No 131
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=47.57 E-value=76 Score=22.86 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=26.6
Q ss_pred hhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 119 GLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 119 ~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+.-+.....+......|..+|..|+.++..|+..+.
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777777888888888888888887664
No 132
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=47.33 E-value=29 Score=19.74 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024675 133 NNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 133 ~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+.|-++.+.|++.++.|+.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677778888888887774
No 133
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=46.95 E-value=35 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHhh-hhc-CCCCH-HHHHHHHHHhCCChHHHhhhhH
Q 024675 58 KRRLTVDQVKALEKNF-EVD-NKLEP-DRKVKLAEELGLQPRQIAVWFQ 103 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F-~~~-~~p~~-~~r~~LA~~lgL~~rqVqvWFQ 103 (264)
+++|+.++....-..+ ... .+++. .....+|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4578888775544444 321 12222 3567899999999999999974
No 134
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=46.74 E-value=38 Score=25.62 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.+++.+..+|. .|-. ...-.++|..+|++...|+.+...-|.+-|
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47777877877 4332 224568999999999999988765444433
No 135
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=46.47 E-value=43 Score=23.45 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.++..+..+|.-.+. . ..-.++|..+|++...|+.+..+-+.|.+.
T Consensus 21 ~Lt~~e~~vl~l~~~---g---~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIAQ---G---LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHTT---T---CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc---C---CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 589999999987432 1 235689999999999999988766655554
No 136
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.24 E-value=44 Score=19.78 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024675 126 DALRLDYNNLQQENEALTAELRELKA 151 (264)
Q Consensus 126 ~~l~~~~~~l~~en~~l~~e~~~l~~ 151 (264)
.+|+.+...|++|...|+=|+..|+.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555555555543
No 137
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.00 E-value=82 Score=23.05 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=26.1
Q ss_pred HHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 024675 115 ERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 115 e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 155 (264)
.++....+..+-............|..|..|++.|+.+|.+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555556667777788888888887764
No 138
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=45.83 E-value=38 Score=22.69 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=14.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 125 YDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 125 ~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
|+.|-...+.|+.||-.|+.|+++--..|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 44444555555555555555554443333
No 139
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.50 E-value=45 Score=22.19 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.+++.+..+|...|....+ ....-.++|..+|++...|+.+...-+.+-+
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4788888999888732111 1122467899999999999988765554444
No 140
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=45.34 E-value=42 Score=20.80 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=22.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 024675 127 ALRLDYNNLQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 155 (264)
.|....+.|..+|..|..|+.+|+.-+..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34556677888889999999999887753
No 141
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=45.11 E-value=69 Score=23.84 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=38.9
Q ss_pred hhhHHHHHHhh--HHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 100 VWFQNRRARLK--SKELERDYGLLKANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 100 vWFQNRRak~K--rk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
..-||-|.|.- +..++.+...|....+.|+.++..+..+.+.++..+..|
T Consensus 37 gyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 37 GYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666544 346677888899999999999999999999999887765
No 142
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=44.46 E-value=66 Score=21.25 Aligned_cols=40 Identities=23% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 024675 116 RDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 116 ~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 155 (264)
+....||..+..|-.....|+.....+..|+.+|+.-|..
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3445677777888777777888888888888888876653
No 143
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.16 E-value=72 Score=21.56 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=22.7
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 122 KANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 122 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
+.....|....+.|..+|..|..++..|+..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777777655
No 144
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.06 E-value=82 Score=24.63 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=28.5
Q ss_pred CChHHHhhhhHHHHHHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024675 93 LQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAK 152 (264)
Q Consensus 93 L~~rqVqvWFQNRRak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~ 152 (264)
|.....+.|=+|+-...-+..++++-..-......|+-+...|.+......+|+++|+..
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677777665544444443322222233444444444444444444444444443
No 145
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.55 E-value=32 Score=25.18 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 121 LKANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 121 lk~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
|+.....+..+.+.|+.+|+.|..++..|
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444455555666666666665554
No 146
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.28 E-value=42 Score=22.68 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHH
Q 024675 61 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 112 (264)
Q Consensus 61 ~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk 112 (264)
+++.+..+|.-.+. .. ...++|..+|++...|+.+..+-+.|.+..
T Consensus 17 L~~~e~~vl~l~~~---g~---s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSAVVA---GL---PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHHTT---TC---CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHc---CC---CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 67888888877432 12 235899999999999999887666665543
No 147
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.50 E-value=31 Score=27.00 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHhh-hhcCCCCHHHHHH-HHHHh--CCChHHHhhhhHHHH
Q 024675 55 TEKKRRLTVDQVKALEKNF-EVDNKLEPDRKVK-LAEEL--GLQPRQIAVWFQNRR 106 (264)
Q Consensus 55 ~rkrrr~t~~Ql~~LE~~F-~~~~~p~~~~r~~-LA~~l--gL~~rqVqvWFQNRR 106 (264)
+++|+++|.+|...+-..+ ..++..+..+... ....+ |++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 5678889999999999988 6677666554333 22277 778888988986643
No 148
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.28 E-value=50 Score=23.75 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=18.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 126 DALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 126 ~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
..|+.....+..+++.|+.++..|+.+|.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666667776666666653
No 149
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.03 E-value=50 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 126 DALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 126 ~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
..|+.+...|..+.+.|+.++..|+.++.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666663
No 150
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.93 E-value=47 Score=20.35 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 128 LRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 128 l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
|....+.|..+|..|..|+.+|++-|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 445566788889999999999988664
No 151
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.83 E-value=48 Score=31.50 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=15.0
Q ss_pred hHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 120 LLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 120 ~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
.++...+..+.....+++|+..+.+|+++|.+++
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444444444444444
No 152
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=39.45 E-value=73 Score=21.40 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788999999888752110 1122358999999999999998765444444
No 153
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.00 E-value=75 Score=20.33 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=16.9
Q ss_pred HHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 115 ERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 115 e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
+.+...|...++.|+..+-.-+.-..-|..|+..|+.++
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 333344444434333333322222334455666666654
No 154
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=37.61 E-value=38 Score=24.28 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=23.0
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhHHH
Q 024675 66 VKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 113 (264)
Q Consensus 66 l~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Krk~ 113 (264)
+.++.-.|+.++||+++-- +|-+ .|||-+|+..+
T Consensus 18 vRiIkiLyQSNP~P~p~GT-----------rqaR---RNRRRRWR~RQ 51 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGT-----------RQAR---RNRRRRWRERQ 51 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSC-----------HHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCc-----------hHHH---HHHHHHHHHHH
Confidence 4556667899999986521 1111 58999998866
No 155
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.38 E-value=71 Score=19.55 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 128 LRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 128 l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
|....+.|..+|..|..|+.+|++.+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 445566788889999999999998774
No 156
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.14 E-value=44 Score=27.06 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
.+++.+..+|...|-.. ....++|..+|++...|+.+...-|.+-|
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 47888888888776322 23468999999999999988765554444
No 157
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.05 E-value=85 Score=22.00 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+-|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3788888999888742100 11234578999999999999987655544443
No 158
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.84 E-value=61 Score=19.85 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 128 LRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 128 l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
|....+.|..+|..|..|+.+|++-|.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 445566788889999999999988664
No 159
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.43 E-value=42 Score=23.81 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 60 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.+++.+..+|.-.+. . .+ -.++|..+|++..-|+.+..+-+.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~--g-~s---~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--G-YS---NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHT--T-CC---TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc--C-CC---HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 489999999987432 1 22 3478999999999999988766665554
No 160
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.30 E-value=1.1e+02 Score=28.96 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=6.9
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 024675 127 ALRLDYNNLQQENEALTA 144 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~ 144 (264)
..+.+++.++++.+.+..
T Consensus 534 ~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 534 AKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHH
Confidence 333333333333333333
No 161
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.21 E-value=44 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 024675 126 DALRLDYNNLQQENEALTAELRELK 150 (264)
Q Consensus 126 ~~l~~~~~~l~~en~~l~~e~~~l~ 150 (264)
..|+..+..|+++|++|+.|-.+..
T Consensus 155 ~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 155 AENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 162
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.16 E-value=71 Score=24.25 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 116 RDYGLLKANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 116 ~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
..+..++...+.|..+++.|+++++.|..++...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777888888888888888888877553
No 163
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.81 E-value=65 Score=23.93 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 59 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 59 rr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
+.++.++...+...+... . ...++|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~---s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--V---SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHHc
Confidence 458888777766666533 2 2467899999999999999964
No 164
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=34.50 E-value=1.7e+02 Score=23.14 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=22.6
Q ss_pred HHHHHHhhHHHHHHHHhhHHH-------hhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024675 103 QNRRARLKSKELERDYGLLKA-------NYDALRLDYNNLQQENEALTAELRELK 150 (264)
Q Consensus 103 QNRRak~Krk~~e~~~~~lk~-------~~~~l~~~~~~l~~en~~l~~e~~~l~ 150 (264)
+|.+.+.....+....+.+.. ....|...+..|...|+.|..++++++
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444444443322 223444444555555555555544444
No 165
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=34.37 E-value=1.4e+02 Score=21.96 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
..|.|+..++..|.. ... .+.+|++...|+.++..
T Consensus 36 g~R~Y~~~dl~~l~~------------I~~-lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 36 GHRRYSDADLDRLQQ------------ILF-YRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCEEBCHHHHHHHHH------------HHH-HHHTTCCHHHHHHHHTC
T ss_pred CCeecCHHHHHHHHH------------HHH-HHHCCCCHHHHHHHHhC
Confidence 345699999988842 233 47889999999988864
No 166
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=33.72 E-value=1.6e+02 Score=22.61 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHH
Q 024675 58 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
.|.|+..++..|.. +.. .+.+|++..+|+.++....
T Consensus 36 ~R~Y~~~dl~~l~~------------I~~-lr~~G~sl~eI~~~l~~~~ 71 (135)
T 1q06_A 36 YRTYTQQHLNELTL------------LRQ-ARQVGFNLEESGELVNLFN 71 (135)
T ss_dssp CEECCHHHHHHHHH------------HHH-HHHTTCCHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHH------------HHH-HHHCCCCHHHHHHHHHhhh
Confidence 45699999988852 223 4788999999999886543
No 167
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.64 E-value=1.6e+02 Score=22.46 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=35.1
Q ss_pred HHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 024675 107 ARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 107 ak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 155 (264)
-|.+-...+.....++..+.....+++.+++....|+.++..|+..|.+
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666667777788888888888888888888864
No 168
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=33.64 E-value=1.2e+02 Score=21.05 Aligned_cols=51 Identities=18% Similarity=0.360 Sum_probs=26.8
Q ss_pred hHHHhhhhHHHHHHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024675 95 PRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELK 150 (264)
Q Consensus 95 ~rqVqvWFQNRRak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~ 150 (264)
...+..||+.+-.--.. ...+.... ....+.+...|++....|..||..|+
T Consensus 26 r~EaE~~y~~k~eel~~-~~~~~~~~----l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 26 LQEAEEWYKSKFADLSE-AANRNNDA----LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677899764332221 11122222 23345566666666777777766654
No 169
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.16 E-value=74 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=20.7
Q ss_pred hhHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 119 GLLKANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 119 ~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
..|+.....+..+.+.|+.+++.|+.++..|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455555666777777888888887777643
No 170
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.05 E-value=43 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=21.1
Q ss_pred hhHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 119 GLLKANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 119 ~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
..|+.....+..+.+.|+.++..|..++..|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566677777788888887777654
No 171
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.00 E-value=98 Score=22.17 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHh
Q 024675 58 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARL 109 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~ 109 (264)
...||..+..+|.-.+. .. ...++|..||++.+.|+....+=+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~---G~---s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK---GF---TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHHT---TC---CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHc---CC---CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34599999999987662 12 356899999999999998766544433
No 172
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.32 E-value=1.9e+02 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024675 135 LQQENEALTAELRELKAKL 153 (264)
Q Consensus 135 l~~en~~l~~e~~~l~~~l 153 (264)
|+.+...|+.....|+..+
T Consensus 93 Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 173
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=32.14 E-value=70 Score=25.05 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 61 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 61 ~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
+++.+..+|.-.|-.. ..-.++|..+|++...|+.+...-|.+-|
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6777777776655322 22458999999999999998765554444
No 174
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=31.36 E-value=71 Score=24.62 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCChH
Q 024675 56 EKKRRLTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGLQPR 96 (264)
Q Consensus 56 rkrrr~t~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~r 96 (264)
.++..+|.+|+..|...|.. +-+.+..+...+.+.||..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 45567999999999999964 457888888888888886543
No 175
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.28 E-value=1.5e+02 Score=21.45 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHHHHhhHHHhhHHHH-------HHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 105 RRARLKSKELERDYGLLKANYDALR-------LDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 105 RRak~Krk~~e~~~~~lk~~~~~l~-------~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
||.+.+-.+...+...|+.-.+.|+ .....|.++...+...+.-|+.+.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444445555444444444 444444555555555555555544
No 176
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.16 E-value=1.4e+02 Score=21.88 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024675 126 DALRLDYNNLQQENEALTAELRELKA 151 (264)
Q Consensus 126 ~~l~~~~~~l~~en~~l~~e~~~l~~ 151 (264)
..|....+.+..++..|+.++.+|+.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666665555554
No 177
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.94 E-value=46 Score=21.34 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=21.7
Q ss_pred HHHHHHhCCChHHHhhhhHHHHHHhhH
Q 024675 85 VKLAEELGLQPRQIAVWFQNRRARLKS 111 (264)
Q Consensus 85 ~~LA~~lgL~~rqVqvWFQNRRak~Kr 111 (264)
.++|..+|+++.-|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 578999999999999988766655544
No 178
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.67 E-value=1.9e+02 Score=23.88 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=15.9
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 121 LKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 121 lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+......|+..+..|......|..++..|+..|.
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555555554443
No 179
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=29.42 E-value=1.9e+02 Score=22.20 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=38.6
Q ss_pred HHHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 024675 106 RARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQE 156 (264)
Q Consensus 106 Rak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~~ 156 (264)
|-..++..++.....+....+.....+..|...+..|..++..|+..+...
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777788888888888888888888888888887643
No 180
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=28.85 E-value=30 Score=23.64 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 181
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=28.76 E-value=84 Score=18.34 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024675 133 NNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 133 ~~l~~en~~l~~e~~~l~~~l 153 (264)
.+|..+|..|++.+.+|-++.
T Consensus 9 asleaenkqlkakveellakv 29 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666665554
No 182
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=28.54 E-value=60 Score=20.38 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 024675 63 VDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQ 103 (264)
Q Consensus 63 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQ 103 (264)
..+...+...+... . ...++|..+|++..-|..|+.
T Consensus 18 ~~~~~~i~~l~~~g--~---s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG--Y---TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT--C---CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555544322 2 355789999999999999874
No 183
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.02 E-value=1.2e+02 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=9.9
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHH
Q 024675 123 ANYDALRLDYNNLQQENEALTAEL 146 (264)
Q Consensus 123 ~~~~~l~~~~~~l~~en~~l~~e~ 146 (264)
.....|..+.+.++..+..|...+
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444444444433
No 184
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.01 E-value=24 Score=22.66 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999997754
No 185
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.59 E-value=1.8e+02 Score=21.29 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 129 RLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 129 ~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
..+.+.-+.+.+.|+.++.+++.++.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666664
No 186
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.36 E-value=83 Score=23.75 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 024675 121 LKANYDALRLDYNNLQQENEALTAELRELKAKLCQE 156 (264)
Q Consensus 121 lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~~ 156 (264)
|...++.++.++..|..++.....|+..|...+..+
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE 38 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKE 38 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 187
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=27.36 E-value=25 Score=22.65 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChHHHhhhhHHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRRA 107 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRRa 107 (264)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 457999999999999999977543
No 188
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.86 E-value=1.1e+02 Score=18.95 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.2
Q ss_pred HHHHHH
Q 024675 141 ALTAEL 146 (264)
Q Consensus 141 ~l~~e~ 146 (264)
+|+.|+
T Consensus 25 ~Lk~eN 30 (37)
T 1t6f_A 25 RLKKEN 30 (37)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 189
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.83 E-value=1.3e+02 Score=22.58 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
...+|++..+..+.++..=+.+.+++..|..+|...+
T Consensus 41 ~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql 77 (94)
T 3jsv_C 41 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555555554444444444444444433
No 190
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.82 E-value=2.2e+02 Score=21.92 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=17.0
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAK 152 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~ 152 (264)
.....+..+.+-+.+.+.+..+++.|+.++..|+..
T Consensus 70 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 70 QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 333344444444444444555555555555555443
No 191
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.74 E-value=1.6e+02 Score=20.31 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+|-.+|....+-.+....|.+=|..|.+|++.++.++.
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq 51 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIH 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 33344444444455556666667777777777776664
No 192
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=26.74 E-value=1.2e+02 Score=22.69 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024675 135 LQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 135 l~~en~~l~~e~~~l~~~l~~ 155 (264)
+..++..|...+.+|+.+|..
T Consensus 77 ~~~~d~~l~~~i~~l~~~l~~ 97 (101)
T 3pvv_A 77 EMAERREVFDHVKELTTRIRQ 97 (101)
T ss_dssp HHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHh
Confidence 444566777888888887753
No 193
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.60 E-value=2.2e+02 Score=21.90 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=34.4
Q ss_pred HHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 116 RDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 116 ~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
....+|++..+..+.++..=+...+++..|..+|...+.
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 367889999999999999999999999999999988774
No 194
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.53 E-value=1.4e+02 Score=22.61 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=8.9
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 024675 127 ALRLDYNNLQQENEALTAE 145 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~e 145 (264)
.|..+.+.|+.+|..|..|
T Consensus 69 eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 69 ELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444445444444
No 195
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.32 E-value=1.4e+02 Score=19.70 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=18.1
Q ss_pred HHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 114 LERDYGLLKANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 114 ~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
+......|.+.+..|.......+.+...|.+++.+|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444454555555555555555555555555443
No 196
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.30 E-value=90 Score=29.24 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 024675 109 LKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELREL 149 (264)
Q Consensus 109 ~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 149 (264)
.|-++++++...|....+.++.+...++++...+++|++.|
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554445444444444444444444433
No 197
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.04 E-value=39 Score=29.49 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=19.1
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 155 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 155 (264)
.++.+-..++.+..+.+.+..+|..+++++.+|+..+.+
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555666666666666666666666666666543
No 198
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.70 E-value=70 Score=28.20 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=28.4
Q ss_pred HHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 115 ERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 115 e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+..+..++.....|...++.|..+...++.|+..|++.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777777777777777777777764
No 199
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.60 E-value=1.7e+02 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
..|.|+..++..|.. +.. .+.+|++-..|+..+..
T Consensus 39 g~R~Y~~~dl~~l~~------------I~~-lr~~G~sl~~I~~~l~~ 73 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQQ------------IQS-FKHLGFSLGEIQNIILQ 73 (146)
T ss_dssp SCEEBCHHHHHHHHH------------HHH-HHHTTCCHHHHHHHHTS
T ss_pred CCEeeCHHHHHHHHH------------HHH-HHHcCCCHHHHHHHHHc
Confidence 356699999988843 223 46788888888887754
No 200
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=25.57 E-value=49 Score=22.85 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999997765
No 201
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=25.51 E-value=19 Score=27.84 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=26.1
Q ss_pred CCChHHHhhhhHHHHHHhhH-------HHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024675 92 GLQPRQIAVWFQNRRARLKS-------KELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA 151 (264)
Q Consensus 92 gL~~rqVqvWFQNRRak~Kr-------k~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~ 151 (264)
||++.+|.-.=+-||.-.-| +....+...|......|..+.+.|..||..|..|+..++.
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66766666554444422111 1112233334333344444444444555555554444433
No 202
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.39 E-value=1.2e+02 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.001 Sum_probs=16.1
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024675 122 KANYDALRLDYNNLQQENEALTAELRELKAK 152 (264)
Q Consensus 122 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~ 152 (264)
+..+.-.......|+.+|+.|++|+.+|...
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444455556666666666665543
No 203
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.36 E-value=1.2e+02 Score=25.40 Aligned_cols=38 Identities=16% Similarity=-0.012 Sum_probs=29.2
Q ss_pred HHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 117 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 117 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
..++....++-+...+..|+.+|..|++|+.+|+...+
T Consensus 139 p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 139 PAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888888888888888888887765
No 204
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=25.31 E-value=29 Score=23.01 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999997754
No 205
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=25.02 E-value=28 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChHHHhhhhHHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRRA 107 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRRa 107 (264)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357999999999999999987654
No 206
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.93 E-value=2.5e+02 Score=21.91 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=13.4
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 121 LKANYDALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 121 lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
|+..+..|.........+.++|+.+.+.|...+
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 333333333333444444444444444444433
No 207
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=24.87 E-value=1.1e+02 Score=22.11 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCC--ChHHHhhhhH
Q 024675 57 KKRRLTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGL--QPRQIAVWFQ 103 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL--~~rqVqvWFQ 103 (264)
+...++.+++..|...|.. +-+.+..+...+...+|+ +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3446899999999999864 457888888888888874 6677777764
No 208
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=24.82 E-value=39 Score=22.48 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.8
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 024675 85 VKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 85 ~~LA~~lgL~~rqVqvWFQNRR 106 (264)
.+||..+|++...|..|..+++
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5688888888888888887655
No 209
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=24.47 E-value=1.9e+02 Score=20.58 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHH
Q 024675 58 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRA 107 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRa 107 (264)
.+.++.++...+...+..... ..++|..+|++...|..|+..-+.
T Consensus 15 ~~~~s~~~r~~i~~~~~~g~s-----~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMAADGIR-----PCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TSCCCHHHHHHHHHHHHTTCC-----HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHcCCC-----HHHHHHHHCcCHHHHHHHHHHHHh
No 210
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.32 E-value=64 Score=21.28 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35788899999999998887654
No 211
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.31 E-value=2.1e+02 Score=20.88 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 024675 58 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQN 104 (264)
.+.|+..++..|.. ... .+.+|++...|+..+..
T Consensus 38 ~R~Y~~~dl~~l~~------------I~~-l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 38 YRLYSDADLERLQQ------------ILF-FKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp CEEBCHHHHHHHHH------------HHH-HHHTTCCHHHHHHHHHC
T ss_pred CeeeCHHHHHHHHH------------HHH-HHHCCCCHHHHHHHHhC
Confidence 45699999988853 222 46788888888887754
No 212
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.24 E-value=96 Score=21.66 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 024675 61 LTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGLQPRQIAVWFQ 103 (264)
Q Consensus 61 ~t~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~rqVqvWFQ 103 (264)
++.++...+...|.. +-+.+..+...+...+|++...|+..|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678888999999864 3357777777777888998888776664
No 213
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.14 E-value=39 Score=22.72 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHH
Q 024675 113 ELERDYGLLKANYDALRLDYNNLQQENEALTAE 145 (264)
Q Consensus 113 ~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e 145 (264)
.-..+...+...++.+..++..|+.++..|.++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444445555555555666666665555543
No 214
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.14 E-value=1.3e+02 Score=24.89 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 59 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 59 rr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
..+|+.+..+|.-.+. .. .-.++|..||++++-|+....|-+.|-.
T Consensus 174 ~~Lt~~e~~vl~~~~~---g~---s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK---GK---TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHHHT---TC---CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc---CC---CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3589999888866432 12 2357899999999999998876555544
No 215
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.90 E-value=1.3e+02 Score=23.36 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=7.4
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 024675 126 DALRLDYNNLQQENEALTA 144 (264)
Q Consensus 126 ~~l~~~~~~l~~en~~l~~ 144 (264)
..|..+.+.++..+..|..
T Consensus 48 q~L~~el~~l~~~~~sLE~ 66 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLEN 66 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3333333344333333333
No 216
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.74 E-value=1.3e+02 Score=18.26 Aligned_cols=27 Identities=11% Similarity=-0.072 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 128 LRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 128 l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
|....+.|..+|..|..|+.+|++-+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 444566778888888899988887664
No 217
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.67 E-value=3.7e+02 Score=25.66 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCChHHHhhhhH---HHHHHhhHHHHHHHHhhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 81 PDRKVKLAEELGLQPRQIAVWFQ---NRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 81 ~~~r~~LA~~lgL~~rqVqvWFQ---NRRak~Krk~~e~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
...+..|...++|++.|.+-=.. .|-++.-..+++.++..|....+.++.-......-.+.+.+|+.+++++..
T Consensus 385 ~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 385 DIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHG 461 (470)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 45567788889999888765432 222444455556666666666666666555555667777778888887764
No 218
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.59 E-value=2.2e+02 Score=20.83 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=11.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 130 LDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 130 ~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
.+|..|..+.+.|..|+..||..+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 219
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.48 E-value=2.4e+02 Score=21.33 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 024675 130 LDYNNLQQENEALTAELRELKA 151 (264)
Q Consensus 130 ~~~~~l~~en~~l~~e~~~l~~ 151 (264)
.....|..+.++|+.|++.|..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555543
No 220
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.44 E-value=1.4e+02 Score=21.62 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=24.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 124 NYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 124 ~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+...|......+..+.+.|+.+...|+.+|.
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888888888775
No 221
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.40 E-value=33 Score=22.69 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||+.+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987754
No 222
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.95 E-value=1.4e+02 Score=22.03 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC--CChHHHhhhhHHHH
Q 024675 59 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELG--LQPRQIAVWFQNRR 106 (264)
Q Consensus 59 rr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lg--L~~rqVqvWFQNRR 106 (264)
+.++.++...+... ...+..+. .+|+..+| ++...|..|+....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCC
Confidence 35888888777666 44554554 46778888 78999999996543
No 223
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.87 E-value=1.1e+02 Score=28.50 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024675 133 NNLQQENEALTAELRELKAK 152 (264)
Q Consensus 133 ~~l~~en~~l~~e~~~l~~~ 152 (264)
+.++++++.++++++.++++
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 20 EELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 224
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=22.80 E-value=1.8e+02 Score=24.79 Aligned_cols=32 Identities=28% Similarity=0.620 Sum_probs=15.3
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 123 ANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 123 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
+.+-++-.++..|..-.+.|++|+.+|+..+.
T Consensus 37 a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~ 68 (206)
T 3oa7_A 37 VNYGSFVSEYNDLTKSHNTLSKELDNLRSRFG 68 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444444444445555555555554
No 225
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.52 E-value=1.2e+02 Score=24.03 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=18.9
Q ss_pred hhHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 119 GLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 119 ~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
..|+...+.+....+.|..++..|+.|+.+|+.++-
T Consensus 21 ~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 21 SILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433334444555555566666666666665553
No 226
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.21 E-value=4.1e+02 Score=25.35 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024675 134 NLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 134 ~l~~en~~l~~e~~~l~~~l~ 154 (264)
.|+.+...|.++++.|.+++.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~ 140 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEA 140 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 227
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=21.92 E-value=50 Score=22.61 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=12.3
Q ss_pred HHHHHhCCChHHHhhhhHH
Q 024675 86 KLAEELGLQPRQIAVWFQN 104 (264)
Q Consensus 86 ~LA~~lgL~~rqVqvWFQN 104 (264)
+||..+|++...|..|-.+
T Consensus 28 elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 28 ELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 5666666666666666655
No 228
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.80 E-value=73 Score=21.98 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 024675 60 RLTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGLQPRQIAVWFQ 103 (264)
Q Consensus 60 r~t~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~rqVqvWFQ 103 (264)
.++..++..|...|.. +-+.+..+...+...+|++..+|+.+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3788889999999864 3467788888888889998888888774
No 229
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.46 E-value=2.2e+02 Score=21.39 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 024675 59 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNR 105 (264)
Q Consensus 59 rr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNR 105 (264)
+.++.++....-..+... . ...++|..+|++...|..|+..-
T Consensus 31 ~~~s~e~r~~iv~~~~~G--~---s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG--V---RPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT--C---CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHHHH
Confidence 468888776666666432 2 24578999999999999999653
No 230
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.28 E-value=39 Score=22.47 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998763
No 231
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.27 E-value=1.9e+02 Score=23.78 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhHHHHHHhh
Q 024675 58 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 (264)
Q Consensus 58 rrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQNRRak~K 110 (264)
...+|+.+..+|.-.+. . ..-.++|..||++++-|+....|-+.|-.
T Consensus 171 ~~~Lt~~e~~vl~~~~~---g---~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV---G---KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT---T---CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc---C---CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34599999998866432 1 23457899999999999988776555443
No 232
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.08 E-value=4.3e+02 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=13.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 024675 127 ALRLDYNNLQQENEALTAELRELKAKLC 154 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~e~~~l~~~l~ 154 (264)
.|+.+...|+.+...|.+++.++.+++.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 233
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.04 E-value=38 Score=21.85 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChHHHhhhhHHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRRA 107 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRRa 107 (264)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999877654
No 234
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.97 E-value=2.2e+02 Score=19.84 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhh
Q 024675 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAV 100 (264)
Q Consensus 57 krrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqv 100 (264)
+....|.++...|+.....-+.-++.+=..||..+|=+..+|+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHH
Confidence 44569999999999998766543444456788889877777764
No 235
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.85 E-value=1.3e+02 Score=23.23 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred cccCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 024675 52 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQ 103 (264)
Q Consensus 52 ~~~~rkrrr~t~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~rqVqvWFQ 103 (264)
+......+.++.++...+...+.... ...++|+.+|++...|..|+.
T Consensus 17 g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 17 GGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 236
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.70 E-value=4e+02 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024675 127 ALRLDYNNLQQENEALTAELRELKAKL 153 (264)
Q Consensus 127 ~l~~~~~~l~~en~~l~~e~~~l~~~l 153 (264)
.|+.+-..++.+...|.+++.++.+++
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 237
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.58 E-value=62 Score=28.11 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHhhHHHhhHHHHHHhHHHH---HHHHHHHHHHHHHHHHH
Q 024675 116 RDYGLLKANYDALRLDYNNLQ---QENEALTAELRELKAKL 153 (264)
Q Consensus 116 ~~~~~lk~~~~~l~~~~~~l~---~en~~l~~e~~~l~~~l 153 (264)
..+..++..++.|+.++..|+ .+.+.|++|+++|++-|
T Consensus 19 ~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 19 VDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp -------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 238
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.56 E-value=41 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45799999999999999987753
No 239
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.34 E-value=1.6e+02 Score=28.72 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=8.4
Q ss_pred hHHHhhhhHHHHHHhhH
Q 024675 95 PRQIAVWFQNRRARLKS 111 (264)
Q Consensus 95 ~rqVqvWFQNRRak~Kr 111 (264)
.+.+..||++.-..+|.
T Consensus 80 sKdseqy~k~~~E~Lr~ 96 (562)
T 3ghg_A 80 NKDSHSLTTNIMEILRG 96 (562)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34455555555444443
No 240
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.13 E-value=58 Score=22.22 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 024675 84 KVKLAEELGLQPRQIAVWFQNRR 106 (264)
Q Consensus 84 r~~LA~~lgL~~rqVqvWFQNRR 106 (264)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999997643
Done!