BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024676
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 67 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 292 NIIASAALENDKTIKLWKS 310
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 67
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 68 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 124 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 181
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 233 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 292
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 293 NIIASAALENDKTIKLWKS 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KL+ +
Sbjct: 295 NIIASAALENDKTIKLYKS 313
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 73 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 298 NIIASAALENDKTIKLWKS 316
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 67 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 292 NIIASAALENDKTIKLWKS 310
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 73 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 298 NIIASAALENDKTIKLWKS 316
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 73 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 298 NIIASAALENDKTIKLWKS 316
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KL+ +
Sbjct: 295 NIIASAALENDKTIKLFKS 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 65
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 66 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 122 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 179
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 231 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 290
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 291 NIIASAALENDKTIKLWKS 309
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 83
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 84 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 140 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 197
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 249 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 309 NIIASAALENDKTIKLWKS 327
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 62
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 63 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 119 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 176
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 228 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 287
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 288 NIIASAALENDKTIKLWKS 306
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 71
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 72 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 128 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 185
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 297 NIIASAALENDKTIKLWKS 315
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 88
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 89 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 145 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 202
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 314 NIIASAALENDKTIKLWKS 332
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 90
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 91 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 147 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 204
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 316 NIIASAALENDKTIKLWKS 334
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 295 NIIASAALENDKTIKLWKS 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A + +K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 295 NIIASAALENDKTIKLWKS 313
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L ++S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
A+ G ++G ED V++++ T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS--CCLDA 71
GH +F + G ++VS S+D+ + N +T + + +GH V S C
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 72 NALFSASGSADFTAKLWDA 90
N + SA+ D T KLW +
Sbjct: 295 NIIASAALENDKTIKLWKS 313
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 17 RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C ++ +
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
A+ SAD K+WD+ TG H++ EH V C F+ + HLLL TG + L+++DLN
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
+ + G NS R D +L+SC+ G +RLWD RS +++ K
Sbjct: 739 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLV 221
P EV S DG I A + V +D + GL+
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDA 71
GH + V + + T DG L+S+S+DS + N +TGD++ + H+ V + D+
Sbjct: 1008 GHKKAVRHIQF---TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1063
Query: 72 NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI-- 128
L S S D T K+W+ +TG + F H+ V +CA S D + +K +I
Sbjct: 1064 RLL---SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
FDL +P E+ +G +R A+ D +L++ D+G +R+W+ G Q L + +
Sbjct: 1121 FDLL---SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSDG---QLLHSCA 1173
Query: 189 PVTSAE 194
P++ E
Sbjct: 1174 PISVEE 1179
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 24/225 (10%)
Query: 17 RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C + F
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH--LLLTGGFEKILRIFDLN 132
A+ S D K+W+++TG+ H++ EH V C F+ +H LL TG + L+++DLN
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-- 188
+ + G NS R D +L+SC+ G ++LWDA S +++ K
Sbjct: 738 QKECRNTMFGHTNSVNHCR----FSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 189 -----PVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLV 221
P EV S DG I A + + +D + GL+
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLL 838
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
L+S S D + + N TG+ F H+G V SC + +A +S SAD TAK+W
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-----APPREVGNSS-- 145
H H VR AFS D+ LL TG +RI++++ + AP E G ++
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT 204
G + + + + ++S+ G ++ W+ +G+ QT T + + VS D + T
Sbjct: 1184 GWVTDLCFSPDGKMLISA---GGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVT 1240
Query: 205 ADGSSVKF 212
D + +
Sbjct: 1241 VDNLGILY 1248
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 17 RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C ++ +
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
A+ SAD K+WD+ TG H++ EH V C F+ + HLLL TG + L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
+ + G NS R D +L+SC+ G +RLWD RS +++ K
Sbjct: 732 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLV 221
P EV S DG I A + V +D + GL+
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDA 71
GH + V + + T DG L+S+S+DS + N +TGD++ + H+ V + D+
Sbjct: 1001 GHKKAVRHIQF---TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1056
Query: 72 NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI-- 128
L S S D T K+W+ +TG + F H+ V +CA S D + +K +I
Sbjct: 1057 RLL---SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
FDL +P E+ +G +R A+ D +L++ D+G +R+W+ G Q L + +
Sbjct: 1114 FDLL---SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSDG---QLLHSCA 1166
Query: 189 PVTSAE 194
P++ E
Sbjct: 1167 PISVEE 1172
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 301 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H VR AFS D + + +K +
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+ VA+ DQTI +S +D V+LW+ R+G+++QTL
Sbjct: 410 KLW--NRNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTLTG 465
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216
S V S DG+ I +A D +VK W+ N
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 383 GHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDD 438
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H VR AFS D + + +K +
Sbjct: 439 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+R VA+ QTI +S +D V+LW+ R+G+++QTL
Sbjct: 492 KLW--NRNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTG 547
Query: 187 -KSPVTSAEVSRDGRYITTADG-SSVKFWD 214
S V S DG+ I +A +VK W+
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 100/214 (46%), Gaps = 24/214 (11%)
Query: 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
HS V + +SP DG + SAS D + L N G + T GH +VW
Sbjct: 12 LEAHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 72 NALFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK 124
+ AS S D T KLW+ LTG H VR AFS D + + +K
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDK 120
Query: 125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
++++ NR + + S S+ VA+ QTI +S +D V+LW+ R+G+++QTL
Sbjct: 121 TVKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTL 176
Query: 185 ET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216
S V S DG+ I +A D +VK W+ N
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + + P DG + SAS D + L N G + T GH +VW +
Sbjct: 260 GHSSSVNGVAFRP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
AS S D T KLW+ + H V AFS D + + +K ++++ NR
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NR 373
Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTS 192
+ + S S+R VA+ QTI +S +D V+LW+ R+G+++QTL S V
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 431
Query: 193 AEVSRDGRYITTA-DGSSVKFWDAN 216
S D + I +A D +VK W+ N
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNRN 456
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +V +
Sbjct: 342 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H V AFS D + + +K +
Sbjct: 398 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+R VA+ QTI +S +D V+LW+ R+G+++QTL
Sbjct: 451 KLW--NRNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTG 506
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216
S V S DG+ I +A D +VK W+ N
Sbjct: 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 24/212 (11%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +V +
Sbjct: 178 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H V AF D + + +K +
Sbjct: 234 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+ VA+ QTI +S +D V+LW+ R+G+ +QTL
Sbjct: 287 KLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-RNGQHLQTLTG 342
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216
S V S DG+ I +A D +VK W+ N
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 21/276 (7%)
Query: 2 DKRKVAVPL-VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D+ +P GHS V D+ I+ DG F +S S D + L + TG F GH
Sbjct: 71 DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH-- 115
V S ++ SGS D T KLW+ L G K++ + H V FS ++
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
++++ G++K++++++L +G+ +G + TV + D ++ +S G LWD
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDL 244
Query: 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
GK + TL+ + + S + ++ A G S+K WD +V + S+
Sbjct: 245 NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 304
Query: 236 EPKL---------GNIFIAGGEDMWVHVFDFHTGEQ 262
EP G AG D V V+ G +
Sbjct: 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 21/276 (7%)
Query: 2 DKRKVAVPL-VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D+ +P GHS V D+ I+ DG F +S S D + L + TG F GH
Sbjct: 48 DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 104
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH-- 115
V S ++ SGS D T KLW+ L G K++ + H V FS ++
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
++++ G++K++++++L +G+ +G + TV + D ++ +S G LWD
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDL 221
Query: 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
GK + TL+ + + S + ++ A G S+K WD +V + S+
Sbjct: 222 NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 281
Query: 236 EPKL---------GNIFIAGGEDMWVHVFDFHTGEQ 262
EP G AG D V V+ G +
Sbjct: 282 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 122/295 (41%), Gaps = 50/295 (16%)
Query: 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
P V GH V+ + + G +VS S D++ + + TG + T GH G VWS
Sbjct: 111 PKVLKGHDDHVI----TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 69 LDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILR 127
+ N + SGS D T K+W+A TG+ H+ + H VR E +++G + LR
Sbjct: 167 MRDNIII--SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAW------------------------LHSDQ----- 158
++D+ +G+ + ++R V + LH+ Q
Sbjct: 223 VWDIETGQCLHVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 159 ---------TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS 209
++S D+ +R+WD +G + TL +TS +D ++ S+
Sbjct: 282 VYSLQFDGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 340
Query: 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQI 263
VK WD ++ P +SA + N I +D V ++D TGE I
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
+ DG +VS + D + + ET + T +GH V+S L + + SGS D + +
Sbjct: 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIR 302
Query: 87 LWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
+WD TG+ H+ H+ + ++ +L++G + ++I+D+ G +
Sbjct: 303 VWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
V L ++ + + +D G V+LWD ++G+ ++ L T
Sbjct: 361 HQ-SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 20/275 (7%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
+ K + TL + V S S + ++ A + +K + + LV SA+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAA 284
Query: 235 LEPKL--------GNIFIAGGEDMWVHVFDFHTGE 261
EP G AG D + V+ T
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGLVK---GYNMPCNTESASLEPKLGNIFIAGGED 249
F + G+N NT +AS + G + + G+D
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKD 217
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
HGH V + I P+G +VSAS+D + + +TG + TF GH+ V + +
Sbjct: 189 HGHDHNVSSV---SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 73 ALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH---------------- 115
AS S D T ++W T + K EH+H+V +++ ++
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 116 ----LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
LL+G +K ++++D++ VG+ + +R V HS + SC D +R
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVL-FHSGGKFILSCADDKTLR 363
Query: 172 LWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWD 214
+WD ++ + ++TL VTS + + Y+ T +VK W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH PV + + P+ +VSAS+D++ + + ETGD+ T +GH +V D +
Sbjct: 106 GHRSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 74 LFSASGSADFTAKLWDALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
AS SAD T KLWD G E + H H V + + + +++ +K ++++++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
G+ +R V + D T+++SC++ VR+W +V T E K+ +
Sbjct: 222 QTGYCVKTFTGHREW-VRMVR-PNQDGTLIASCSNDQTVRVW------VVATKECKAEL 272
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
+ K + TL + V S S + ++ A + +K + + LV GY+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
+ SL G AG D + V+ T
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGLVK---GYNMPCNTESASLEPKLGNIFIAGGED 249
F + G+N NT +AS + G + + G+D
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKD 217
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
+ K + TL + V S S + ++ A + +K + + LV GY+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
+ SL G AG D + V+ T
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGLVK---GYNMPCNTESASLEPKLGNIFIAGGED 249
F + G+N NT +AS + G + + G+D
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKD 217
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 26/257 (10%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH RP+ + Y+ +G L S SKDSS + G+ +GT +GH G +WS +D
Sbjct: 30 GHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR------ 127
+ +GSAD++ KLWD G +++ V+ FS + L + +++
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL-AILDNVMKNPGSIN 145
Query: 128 IFDLNRPDA----------PPREVGNSSG-SIRTVA-WLHSDQTILSSCTDSGGVRLWDA 175
I+++ R A P ++ G TVA W + I++ D G + +D
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDV 204
Query: 176 RSG-KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFW-DANHFGLVKGYNMPCNTES 232
+ + V +++ + ++ + S D Y T+ + F D + ++K Y C +
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264
Query: 233 ASLEPKLGNIFIAGGED 249
A + P I + GG++
Sbjct: 265 AVITPLKEFIILGGGQE 281
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 44 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 218
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
+ K + TL + V S S + ++ A + +K + + LV GY+
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
+ SL G AG D + V+ T
Sbjct: 279 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 61
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 120
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 121 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 218 FGLVK---GYNMPCNTESASLEPKLGNIFIAGGED 249
F + G+N NT +AS + G + + G+D
Sbjct: 180 FQIEADFIGHNSNINTLTASPD---GTLIASAGKD 211
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 20/269 (7%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
+ K + TL + V S S + ++ A + +K + + LV GY+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVF 255
+ SL G AG D + V+
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGLVK---GYNMPCNTESASLEPKLGNIFIAGGED 249
F + G+N NT +AS + G + + G+D
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKD 217
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 20/275 (7%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDC---TLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K ++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKXVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIXLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
+ K TL + V S S + ++ A + +K + + LV GY+
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
+ SL G AG D + V+ T
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVXSVDIDKKASXIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 218 FGLVK---GYNMPCNTESASLEPKLGNIFIAGGED 249
F + G+N NT +AS + G + + G+D
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKD 217
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V D+ ++ DG F +S S D L + G F GH V S +
Sbjct: 428 GHSHFVEDVV---LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDT--HLLLTGGFEKIL 126
S S D T KLW+ L G+ K++ H+ V FS +T +++ ++K +
Sbjct: 485 RQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
++++L+ G++ G + TVA + D ++ +S G V LWD GK + +LE
Sbjct: 544 KVWNLSNCKLRSTLAGHT-GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES 232
S + + S + ++ A +K WD +V+ + E+
Sbjct: 602 NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEA 647
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
GH V + +SP T +VSAS D + + N T GH G V + + +
Sbjct: 514 EGHRDWVSCVRFSPNTLQPT-IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 73 ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
ASG D LWD G + +S E ++ A FS + + L E ++I+DL
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY-WLCAATEHGIKIWDLE 631
Query: 133 ------------RPDAPPREVGNSSGSIRTVA------WLHSDQTILSSCTDSGGVRLW 173
+ +A + + + R V W T+ S TD G +R+W
Sbjct: 632 SKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD-GVIRVW 689
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 24/227 (10%)
Query: 55 GTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFE------HKHIVRA 107
GT H V + NA S S D + LW D+ + H H V
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167
S D L+G ++ LR++DL + R VG++ + +VA+ ++ I+S+ D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQIVSASRDR 494
Query: 168 GGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTADGS---SVKFWDANHFG 219
++LW+ G+ T+ + V+ S + T S +VK W+ ++
Sbjct: 495 -TIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 220 L---VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
L + G+ +T + S + G++ +GG+D V ++D G+++
Sbjct: 553 LRSTLAGHTGYVSTVAVSPD---GSLCASGGKDGVVLLWDLAEGKKL 596
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH 115
EGH V L N F+ S S D + +LW+ G ++ F H V + AFS D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWD 174
+++GG + LR++++ G + + V + S D ++ S V++WD
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 175 ARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSV-KFWD 214
+G++V L+ + VTS VS DG ++D V + WD
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 15/216 (6%)
Query: 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
GHS V D+ ++ +G F VSAS D S L N + G F GH V S +
Sbjct: 64 EGHSAFVSDV---ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 73 ALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSE--DTHLLLTGGFEKILR 127
SG D ++W+ + G+ H+ H V FS D ++++GG++ +++
Sbjct: 121 NRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 128 IFDLNRPDAPPREVGNSSGSIRTV--AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185
++DL A R V + G V + D ++ +S G RLWD G+ + +
Sbjct: 180 VWDL----ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV 221
+P+ S + ++ A ++ +D + ++
Sbjct: 236 AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDII 271
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 9/166 (5%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
H+ V + +SP + D +VS D+ + + TG + +GH V S + +
Sbjct: 150 AHTDWVSCVRFSP-SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG 208
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
AS D A+LWD G+ + FS + + + EK +RIFDL
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMC-AATEKGIRIFDLEN 267
Query: 134 PDAPPREVGNSSGSIR------TVAWLHSDQTILSSCTDSGGVRLW 173
D GS + ++AW T+ S TD+ +R+W
Sbjct: 268 KDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDN-VIRVW 312
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 32/191 (16%)
Query: 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCC 68
V + H++ V + + P L SAS D + L E DW+ T EGH+ VWS
Sbjct: 145 VLNSHTQDVKHVVWHPSQE---LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 69 LDANALFSASGSADFTAKLW-DALTGDEKH----------------SFEHKHIVRACAFS 111
D + AS S D T ++W L G+E+ S H + A+
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------SGSIRTVAWLHSDQTILS 162
+ T L T + +R+F + P++ P++ S S + VAW + +L+
Sbjct: 262 QLTGALATACGDDAIRVFQED-PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 163 SCTDSGGVRLW 173
SC+D G V W
Sbjct: 321 SCSDDGEVAFW 331
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 19/179 (10%)
Query: 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML--RNGETGDWIGTFEGHKGA 63
+ ++ GH R V + +SP G +L SAS D++ + +N + + + T EGH+
Sbjct: 51 ICKSVLSEGHQRTVRKVAWSPC---GNYLASASFDATTCIWKKNQDDFECVTTLEGHENE 107
Query: 64 VWSCCLDANALFSASGSADFTAKLWDALTGDE--------KHSFEHKHIVRACAFSEDTH 115
V S + A+ S D + +W+ DE H+ + KH+V +
Sbjct: 108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV----WHPSQE 163
Query: 116 LLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
LL + ++ ++++ D + ++ ++A+ S Q L+SC+D VR+W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW 221
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 25/204 (12%)
Query: 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
++ RK+ ++ GH + + L Y P G LVS S D + + + TG T
Sbjct: 152 IENRKIV--MILQGHEQDIYSLDY---FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTG--------DEKHSFEHKHIVRACAFSE 112
G + + A+GS D ++WD+ TG + + HK V + F+
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-----------IRTVAWLHSDQTIL 161
D +++G ++ +++++L + +SG+ + +VA +D+ IL
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 162 SSCTDSGGVRLWDARSGKIVQTLE 185
S D GV WD +SG + L+
Sbjct: 327 SGSKDR-GVLFWDKKSGNPLLMLQ 349
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 34/280 (12%)
Query: 9 PLVCHGHSRPVVDLFYSPI--TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS 66
P + S P DL+ + +PDG FL + ++D + + E + +GH+ ++S
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 67 CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKI 125
+ SGS D T ++WD TG + + V A S D + G ++
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 230
Query: 126 LRIFD------LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
+R++D + R D+ S+ +V + Q+++S D V+LW+ ++
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNAN 289
Query: 180 IVQTLETKSP---------------VTSAEVSRDGRYITT-ADGSSVKFWD---ANHFGL 220
++K+P V S +++ YI + + V FWD N +
Sbjct: 290 --NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347
Query: 221 VKGYNMPCNTESASLEPKLG---NIFIAGGEDMWVHVFDF 257
++G+ + + + LG N+F G D ++ +
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 19/181 (10%)
Query: 98 SFEHKHIVRACAFSEDTHLLLTGGFEK-----------ILRIFDLNRPDAPPREVGNSSG 146
S +H +V FS D L TG + + R+ D + + P + SS
Sbjct: 60 SLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 147 S-----IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR 200
IR+V + D L++ + +R+WD + KIV L+ + + S + G
Sbjct: 120 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 201 YITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
+ + G +V+ WD ++ + ++ P G AG D V V+D T
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 260 G 260
G
Sbjct: 239 G 239
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 27/273 (9%)
Query: 11 VCHGHSRPVVDL---FYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGH 60
+ GHS V + F D L+S S+D + M+ +NG G GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLT 119
V L F+ S S D T +LWD TG F H+ V + AFS D +L+
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 120 GGFEKILRIFD-LNRPDAPPREVGNSSGSIRTVAW---LHSDQTI------LSSCTDSGG 169
G E+ +++++ L E N S + V + + S + +S G
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL-VKGYNM 226
+++W+ + +I T + +S V +S +G+YI T + WD + + ++
Sbjct: 196 LKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254
Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
+ PKL ++A G D V +F+ T
Sbjct: 255 GSTINQIAFNPKLQ--WVAVGTDQGVKIFNLMT 285
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSG 146
+ +FE H+H V AF+ +D +G ++ ++++ L + + P G G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERG 186
Query: 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITT 204
+ D+ + + +D +++WD ++ V TLE S V I+
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 205 ADGSSVKFWDANHFGLVKGYNM 226
++ ++K W+++ + + K N+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSG 146
+ +FE H+H V AF+ +D +G ++ ++++ L + + P G G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERG 186
Query: 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITT 204
+ D+ + + +D +++WD ++ V TLE S V I+
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 205 ADGSSVKFWDANHFGLVKGYNM 226
++ ++K W+++ + + K N+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90 --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
AL + +FE H+H V AF+ +D +G ++ ++++ L + P + ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTL--TT 181
Query: 146 GSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
G R V ++ D+ + + +D +++WD ++ V TLE S V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
I+ ++ ++K W+++ + + K N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 18/225 (8%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
T +GH G V+S + S S D +W+ALT + H+ + H V CAF+ +
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 115 HLLLTGGFEKILRIFDL----NRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSG 168
+ GG + IF+L +R P R + G + ++ +T L + +
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 169 GVRLWDARSGKIVQTLETKSP------VTSAEVS--RDGRYITTADGSSVKFWDANHFG- 219
LWD +G+ + ++ P V S ++ +I+ + ++V+ WD
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 220 LVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
V+ Y+ + S P G F G +D +FD TG Q+
Sbjct: 241 AVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQL 284
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 91/263 (34%), Gaps = 75/263 (28%)
Query: 10 LVC----HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----------WI- 54
LVC GHS V L + TP+ ++VSAS+D ++ N T W+
Sbjct: 56 LVCCRTLQGHSGKVYSLDW---TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112
Query: 55 --------------------------------------GTFEGHKGAVWSC-CLDANALF 75
GHKG SC +
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 76 SASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSEDT---HLLLTGGFEKILRI 128
+GS D T LWD TG F H + S ++ ++ ++G + +R+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
+DL R G I +V + Q + +D G RL+D R+G +Q + +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQ-VYNRE 290
Query: 189 P---------VTSAEVSRDGRYI 202
P VTS S GR +
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLL 313
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDAN 72
GH+ V+ L + + + F +S S D++ L + T + T+ GH+G + S +
Sbjct: 203 GHTADVLSLSINSLNANMF--ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260
Query: 73 ALFSASGSADFTAKLWDALTGDEKHSFEHK--------HIVRACAFSEDTHLLLTG 120
+GS D T +L+D TG + + + IV + AFS LL G
Sbjct: 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90 --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
AL + +FE H+H V AF+ +D +G ++ ++++ L + P + ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-TPNFTL--TT 181
Query: 146 GSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
G R V ++ D+ + + +D +++WD ++ V TLE S V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
I+ ++ ++K W+++ + + K N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
+ EGH+ V S + +AS S D +LWD G + S + + AFS D+
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
L TG + IF + + I ++A+ D L+S G + ++D
Sbjct: 135 QYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIAY-SPDGKYLASGAIDGIINIFD 192
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220
+GK++ TLE + P+ S S D + + TA D +K +D H L
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH VV + S P S+S D+ L + E G I + + W+ ++
Sbjct: 78 GHQLGVVSVDISHTLP---IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
+ A+G+ ++ +G +++S + + + + A+S D L +G + I+ IFD+
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
G++ IR++ D +L + +D G ++++D + + TL
Sbjct: 195 TGKLLHTLEGHAM-PIRSLT-FSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG 79
VD + +PD +L + + + E+G + + + S + + ASG
Sbjct: 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 80 SADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP 138
+ D ++D TG H+ E H +R+ FS D+ LL+T + ++I+D+ +
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
Query: 139 REVGNSS 145
G++S
Sbjct: 243 TLSGHAS 249
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH+ P+ L +SP D LV+AS D + + + + GT GH V + +
Sbjct: 204 GHAMPIRSLTFSP---DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260
Query: 74 LFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
S S+D + K+WD T H+ F+H+ V ++ + +++ G ++ + I+D
Sbjct: 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87
+PDG +L S + D + + TG + T EGH + S ++ + S D K+
Sbjct: 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 88 WDALTGDEKHSFE-HKHIVRACAFS-EDTHL 116
+D + + H V AF +DTH
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 114/296 (38%), Gaps = 69/296 (23%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
++++ + D + + ++ GH G VW+ A+ SGS D T ++WD
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93 GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
G H FE H VR E + ++TG + L ++ L +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
P+ P VG G S+RTV+
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
+ H + +S+ D+ +R+WD +G+++ TL+ + + D ++ A
Sbjct: 313 IYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
S++ WDAN + Y+ N + + NI ++G E+ + ++++ +G+ +
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLV 425
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 113/296 (38%), Gaps = 69/296 (23%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
++++ + D + + ++ GH G VW+ A+ SGS D T ++WD
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93 GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
G H FE H VR E + ++TG + L ++ L +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
P+ P VG G S+RTV+
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
+ H + +S+ D+ +R+WD +G++ TL+ + + D ++ A
Sbjct: 313 IYSTIYDHERKRCISASXDTT-IRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
S++ WDAN + Y+ N + + NI ++G E+ + ++++ +G+ +
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLV 425
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
+ + GG + I I++L + RE+ +G + +L +Q + SS +
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 178
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
LWD +G+ T + V S ++ D R +++ A +S K WD + + +
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
+A GN F G +D +FD +++
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 272
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 314
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 286
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 287 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 345
Query: 210 -VKFWD 214
+K W+
Sbjct: 346 FLKIWN 351
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 103/245 (42%), Gaps = 14/245 (5%)
Query: 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
D LVSAS+D ++ + T + + V +C + + A G D +++
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 90 ALT--GDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS 144
T G+ + S E H + C F +D ++ + G + ++D+ G+
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGH- 194
Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR-YI 202
+G + +++ L D + S +LWD R G QT +S + + +G +
Sbjct: 195 TGDVMSLS-LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 203 TTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
T +D ++ + +D + Y N+ C S S K G + +AG +D +V+D
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALK 312
Query: 260 GEQIG 264
++ G
Sbjct: 313 ADRAG 317
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 57 FEGHKGAVWSCC--LDANALFSASGSADFTAKLWD-ALTGDEKHSFEHKHIVRACAFSED 113
GH G + SCC LD N + ++SG D T LWD H V + + + D
Sbjct: 150 LAGHTGYL-SCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 206
Query: 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
T L ++G + +++D+ G+ S I + + + + +D RL+
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATG-SDDATCRLF 264
Query: 174 DARSGKIVQTLETKSP---VTSAEVSRDGRYITTA-DGSSVKFWD---ANHFGLVKGYN 225
D R+ + + T + +TS S+ GR + D + WD A+ G++ G++
Sbjct: 265 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 323
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
+ + GG + I I++L + RE+ +G + +L +Q + SS +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
LWD +G+ T + V S ++ D R +++ A +S K WD + + +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
+A GN F G +D +FD +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 103/245 (42%), Gaps = 14/245 (5%)
Query: 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
D LVSAS+D ++ + T + + V +C + + A G D +++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 90 ALT--GDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS 144
T G+ + S E H + C F +D ++ + G + ++D+ G+
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGH- 183
Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR-YI 202
+G + +++ L D + S +LWD R G QT +S + + +G +
Sbjct: 184 TGDVMSLS-LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 203 TTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
T +D ++ + +D + Y N+ C S S K G + +AG +D +V+D
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALK 301
Query: 260 GEQIG 264
++ G
Sbjct: 302 ADRAG 306
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 57 FEGHKGAVWSCC--LDANALFSASGSADFTAKLWD-ALTGDEKHSFEHKHIVRACAFSED 113
GH G + SCC LD N + ++SG D T LWD H V + + + D
Sbjct: 139 LAGHTGYL-SCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
T L ++G + +++D+ G+ S I + + + + +D RL+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATG-SDDATCRLF 253
Query: 174 DARSGKIVQTLETKSP---VTSAEVSRDGRYITTA-DGSSVKFWD---ANHFGLVKGYN 225
D R+ + + T + +TS S+ GR + D + WD A+ G++ G++
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
+ + GG + I I++L + RE+ +G + +L +Q + SS +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
LWD +G+ T + V S ++ D R +++ A +S K WD + + +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
+A GN F G +D +FD +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 103/245 (42%), Gaps = 14/245 (5%)
Query: 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
D LVSAS+D ++ + T + + V +C + + A G D +++
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 90 ALT--GDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS 144
T G+ + S E H + C F +D ++ + G + ++D+ G+
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGH- 183
Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR-YI 202
+G + +++ L D + S +LWD R G QT +S + + +G +
Sbjct: 184 TGDVMSLS-LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 203 TTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
T +D ++ + +D + Y N+ C S S K G + +AG +D +V+D
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALK 301
Query: 260 GEQIG 264
++ G
Sbjct: 302 ADRAG 306
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 57 FEGHKGAVWSCC--LDANALFSASGSADFTAKLWD-ALTGDEKHSFEHKHIVRACAFSED 113
GH G + SCC LD N + ++SG D T LWD H V + + + D
Sbjct: 139 LAGHTGYL-SCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
T L ++G + +++D+ G+ S I + + + + +D RL+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATG-SDDATCRLF 253
Query: 174 DARSGKIVQTLETKSP---VTSAEVSRDGRYITTA-DGSSVKFWD---ANHFGLVKGYN 225
D R+ + + T + +TS S+ GR + D + WD A+ G++ G++
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
+ + GG + I I++L + RE+ +G + +L +Q + SS +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
LWD +G+ T + V S ++ D R +++ A +S K WD + + +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
+A GN F G +D +FD +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 57 FEGHKGAVWSCC--LDANALFSASGSADFTAKLWD-ALTGDEKHSFEHKHIVRACAFSED 113
GH G + SCC LD N + ++SG D T LWD H V + + + D
Sbjct: 139 LAGHTGYL-SCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
T L ++G + +++D+ G+ S I + + + + +D RL+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATG-SDDATCRLF 253
Query: 174 DARSGKIVQTLETKSP---VTSAEVSRDGRYITTA-DGSSVKFWD---ANHFGLVKGYN 225
D R+ + + T + +TS S+ GR + D + WD A+ G++ G++
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
+ + GG + I I++L + RE+ +G + +L +Q + SS +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
LWD +G+ T + V S ++ D R +++ A +S K WD + + +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
+A GN F G +D +FD +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 57 FEGHKGAVWSCC--LDANALFSASGSADFTAKLWD-ALTGDEKHSFEHKHIVRACAFSED 113
GH G + SCC LD N + ++SG D T LWD H V + + + D
Sbjct: 139 LAGHTGYL-SCCRFLDDNQIVTSSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
T L ++G + +++D+ G+ S I + + + + +D RL+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATG-SDDATCRLF 253
Query: 174 DARSGKIVQTLETKSP---VTSAEVSRDGRYITTA-DGSSVKFWD---ANHFGLVKGYN 225
D R+ + + T + +TS S+ GR + D + WD A+ G++ G++
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSE 112
IGT +GH V ++ L ASG D ++WDA + K + H V+A A+
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGV 170
++LL TGG +I N ++ + ++ W HS + + + +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 171 RLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT-ADGSSVKFW 213
+W S + + ++ + V + +S DGR ++T A ++KFW
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCC 68
V HS+ V + + P L S+S D + + DW + GH+G VWS
Sbjct: 148 VLQEHSQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 69 LD-ANALFS-ASGSADFTAKLWDALTGDEKHSFE----------HKHIVRACAFSEDTHL 116
D +F SGS D T ++W + DE E HK V A+ + L
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263
Query: 117 LLTGGFEKILRIF---DLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRL 172
+ + G + +L ++ D R + + I V WL + +TIL++ D G V
Sbjct: 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 173 W 173
W
Sbjct: 324 W 324
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKL----WDALTG-DEKHSFEHKHIVRAC 108
I + + +K +WS D + A+GS D KL +D T D HK +R+
Sbjct: 7 IKSLKLYKEKIWS--FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV 64
Query: 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--------VGNSSGSIRTVAWLHSDQTI 160
A+ T LL G F+ + I+ + ++ R + ++ VAW +D
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIW--AKEESADRTFEMDLLAIIEGHENEVKGVAW-SNDGYY 121
Query: 161 LSSCTDSGGVRLWD 174
L++C+ V +W+
Sbjct: 122 LATCSRDKSVWIWE 135
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 42/220 (19%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+VS +D++ + + T + GH G+V CL + +GS+D T ++WD TG
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPR------------- 139
+ ++ H H + +++T ++ + ++D+ P D R
Sbjct: 204 EMLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 140 ----------------EVGNSS---------GSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+V N+S G R +A L ++ S + +RLWD
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214
G ++ LE + + R ++ A +K WD
Sbjct: 323 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 20/201 (9%)
Query: 68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV-----RACAFSEDTHLLLTGGF 122
CL + SG D T K+WD K++ E K I+ D +++TG
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWD------KNTLECKRILTGHTGSVLCLQYDERVIITGSS 191
Query: 123 EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--I 180
+ +R++D+N + + + V L + ++ +C+ + +WD S
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 181 VQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMPCNTESASLEPKL 239
++ + V D +YI +A G ++K W+ + V+ N + +
Sbjct: 248 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG--HKRGIACLQYR 305
Query: 240 GNIFIAGGEDMWVHVFDFHTG 260
+ ++G D + ++D G
Sbjct: 306 DRLVVSGSSDNTIRLWDIECG 326
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
+ K+ I +L P A G ++ + +AW H +I++ ++G +RLW+ ++G ++
Sbjct: 85 YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-ENGELRLWN-KTGALL 142
Query: 182 QTLE-TKSPVTSAEVSRDGRYITTADGSSVK-FWDA------NHFGLVKGYNMPCNTESA 233
L ++P+ S + ++DG +I + D +V W+ HF L + N E+
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 234 SLEPKLG 240
S + LG
Sbjct: 203 SGDGSLG 209
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
H + F++ LLL+ + LRI+ ++ G+S SI + +W+ D+ I
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVI 304
Query: 161 LSSCTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYITTA 205
SC+ G VRLW + ++ ++ P+ + +S+DG+ A
Sbjct: 305 --SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158
+ +R+C D L+ GG L I+DL P + SS + D
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA-EVSRDGRYITTAD-GSSVKFWD 214
+ SC G + +WD + +V+ + + S ++S DG + T ++V+ WD
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 75 FSASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
F A+ S D T K+WD K SF H+H V A FS D LLT + +R++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 131 LNRPDAP 137
++ D P
Sbjct: 325 ASQWDCP 331
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 75 FSASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
F A+ S D T K+WD K SF H+H V A FS D LLT + +R++
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
Query: 131 LNRPDAP 137
++ D P
Sbjct: 326 ASQWDCP 332
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 75 FSASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
F A+ S D T K+WD K SF H+H V A FS D LLT + +R++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 131 LNRPDAP 137
++ D P
Sbjct: 325 ASQWDCP 331
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 86 KLWDALTGDEKHS--------FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137
+LW+ L EK S +EH IV+ + D ++GG + ++++DL++ A
Sbjct: 118 ELWEIL---EKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AV 173
Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
+ S + VA TI SC + G + LWD R K
Sbjct: 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 128 IFDLNRPDAPPREVGNSSG-----SIRTVAWLHSDQTILSSCTDSGGVRLWD--ARSGKI 180
I+ P+ P E ++G + VAW+ +++S DSG V LW+ + +
Sbjct: 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS--DSGAVELWEILEKESLL 129
Query: 181 VQTL---ETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNM-PCNTESASL 235
V E V + V DG + ++ SVK WD + ++K YN +
Sbjct: 130 VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA 189
Query: 236 EPKLGNIFIAGGEDMWVHVFD 256
P IF++ GED + ++D
Sbjct: 190 CPGKDTIFLSCGEDGRILLWD 210
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 76 SASGSADFTAKLWD-----ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
+ SG DF+ K+WD L HS E + V AC +DT L G +IL ++D
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-VNCVAACP-GKDTIFLSCGEDGRIL-LWD 210
Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQT 183
+P R +S +I T H ++ +C D +G V L + ++ QT
Sbjct: 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSC 67
H++ V + Y+P DG S D + +L NG G G FE H G+V+
Sbjct: 189 HTKFVHSVRYNP---DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 245
Query: 68 CLDANALFSASGSADFTAKLWDALT 92
+ AS SAD T K+W+ T
Sbjct: 246 TWSPDGTKIASASADKTIKIWNVAT 270
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQ 158
H V ++S D L TG + + ++++N+P P + ++ S+ +V WL+ +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ET 593
Query: 159 TILSSCTDSGGVRLWD 174
TI+S+ DS ++ W+
Sbjct: 594 TIVSAGQDS-NIKFWN 608
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 57/263 (21%)
Query: 56 TFEGHKGAVWSC--CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSE 112
T +GH V C D + S+S D +WD+ T +++H+ V ACA++
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSS--QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 113 DTHLLLTGGFEKILRI----FDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSS---- 163
+ GG + + FD N A ++ V + + ++ +SD IL++
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176
Query: 164 ------------------------CTD-----------SGG----VRLWDARSGKIVQTL 184
C D SGG +WD RSG+ VQ
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 185 ET-KSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCNTESA-SLEPKL-G 240
ET +S V S G + + +D ++ + +D V Y+ A S++ L G
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296
Query: 241 NIFIAGGEDMWVHVFDFHTGEQI 263
+ AG D ++V+D G ++
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRV 319
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS----ASGSADFTAKLWD 89
+++AS D + L + E+G + +F GH V CLD + SG D A +WD
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVL--CLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGS 147
+G +FE H+ V + + +G + R++DL R D REV S S
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RAD---REVAIYSKES 282
Query: 148 I----RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDG 199
I +V + S + + + D + +WD G V L ++ V++ VS DG
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDY-TINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 26 PITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85
+ DG F +S S D L + TGD + T+EGH+ V+ L N + G D T
Sbjct: 191 AVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTV 248
Query: 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF 129
++W G K I ++ G + ++RIF
Sbjct: 249 RIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIF 292
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 49 ETGDWIGTFEGHKGAVWSC---CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV 105
+ G + + H +VW N +AS AD T KLW + S H +V
Sbjct: 130 KEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS--ADKTIKLWQNDKVIKTFSGIHNDVV 187
Query: 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165
R A +D H + + ++++ D + D G+ S + + L + + SC
Sbjct: 188 RHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHES-FVYCIKLLPNGDIV--SCG 243
Query: 166 DSGGVRLWDARSGKIVQTL 184
+ VR+W +G + Q +
Sbjct: 244 EDRTVRIWSKENGSLKQVI 262
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF----EGHKGAVWSCCL--DANALF 75
L +SP T G FL++ S + +R E D T + H G V C D + +F
Sbjct: 45 LSFSPPTLPGNFLIAGSWAND--VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102
Query: 76 SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFD 130
+AS D TAK+WD + +H V+ + + + ++TG ++K L+ +D
Sbjct: 103 TAS--CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 115 HLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
+ L+ G + +R +++ P+ +G + V W + ++ D ++W
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA-KMW 113
Query: 174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS---SVKFWD 214
D S + +Q + +PV + + Y GS ++KFWD
Sbjct: 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 108 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 166 LLGEKIMSCGMDHSLKLW 183
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 112 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 113 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 171 LLGEKIMSCGMDHSLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 112 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88
P G L+S+S+D + + + G T GH+ V + S S D T +LW
Sbjct: 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Query: 89 DALTGDEKHSFEHK 102
+ TG H+F K
Sbjct: 209 ECGTGTTIHTFNRK 222
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
PR + ++ +A + + +LS+ D G +RLW+ +G + T K
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRK 222
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88
P G L+S+S+D + + + G T GH+ V + S S D T +LW
Sbjct: 146 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Query: 89 DALTGDEKHSFEHKH 103
+ TG H+F K
Sbjct: 206 ECGTGTTIHTFNRKE 220
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
PR + ++ +A + + +LS+ D G +RLW+ +G + T K
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRK 219
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 149 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 207 LLGEKIMSCGMDHSLKLW 224
>pdb|1UG9|A Chain A, Crystal Structure Of Glucodextranase From Arthrobacter
Globiformis I42
pdb|1ULV|A Chain A, Crystal Structure Of Glucodextranase Complexed With
Acarbose
Length = 1020
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
+LW L+G E+ + + A + E H G+ +++D + P + E+G S+
Sbjct: 589 RLWPLLSG-ERGEYALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRST 647
Query: 146 GSIRTVAWLHSDQTILSSCTDSG 168
GS ++W + L++ +G
Sbjct: 648 GSASPLSWAMAQYVRLAAGVKAG 670
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 36/193 (18%)
Query: 101 HKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNR-PDAP----PREVGNSSGSIRTV--- 151
H V+ F ++ ++L +GG + I+D+N+ ++P P G S S+ V
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171
Query: 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVS--------RDGRYIT 203
AW S + +S S +WD ++ K V L SP + + ++ +
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231
Query: 204 TADGS----SVKFWDANHFGLVKGYNMPCNTESASLEPKL---------GNIFIAGGEDM 250
TA GS S+ WD ++ N P T + + + ++ ++ G D
Sbjct: 232 TATGSDNDPSILIWD------LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 251 WVHVFDFHTGEQI 263
V +++ + EQ+
Sbjct: 286 TVLLWNPESAEQL 298
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 31/215 (14%)
Query: 77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS--EDTHLLLTGGFE-KILRIFDLNR 133
S S D T K+WD T F + V + S H L+ G +++ DL
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR------------SGKIV 181
G+ I V+W IL++ + V+LWD R +GK
Sbjct: 176 GSCSHILQGHRQ-EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 182 QTLETKSPVTSAEV-----SRDGRY-ITTADGSSVKFWD-ANHFGLVKGYNMPCNTESAS 234
Q +E+ + + +V + DG + +T + ++ W+ +N + Y CN
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 235 LEPKLGN------IFIAGGEDMWVHVFDFHTGEQI 263
L+ + +F+ G + V+ ++GEQI
Sbjct: 295 LKFTVSCGCSSEFVFVPYGST--IAVYTVYSGEQI 327
>pdb|3C75|H Chain H, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
pdb|3C75|J Chain J, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
Length = 426
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 44 MLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH 101
++ N ETG+ I E GH+ + DA L A + T ++DA TG+E S +
Sbjct: 353 VVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQ 411
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 17/179 (9%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P L+SAS D + L + G+ D F GH
Sbjct: 171 LRLRGHQKEGYGLSWNPNL--SGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 228
Query: 63 AVW--SCCLDANALFSASGSADFTAKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHL 116
V S L +LF S + D +WD T HS + H V +F+ +
Sbjct: 229 VVEDVSWHLLHESLF-GSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 117 LL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+L TG +K + ++DL + I V W ++TIL+S + +WD
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 185 ETKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216
E S ++ + S GRY+ T D SVK WD N
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLN 314
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 179 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 63 AVWSCC--LDANALFSASGSADFTAKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHL 116
V L +LF S + D +WD T H+ + H V +F+ +
Sbjct: 237 VVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 117 LL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+L TG +K + ++DL + I V W ++TIL+S + +WD
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 177 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 63 AVWSCC--LDANALFSASGSADFTAKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHL 116
V L +LF S + D +WD T H+ + H V +F+ +
Sbjct: 235 VVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 117 LL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+L TG +K + ++DL + I V W ++TIL+S + +WD
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL--WDALTGDE 95
S + P+LR + E H +W A A F + D + + W+AL DE
Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHD--IWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDE 124
Query: 96 KHSFEH 101
+H H
Sbjct: 125 RHFISH 130
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 175 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 63 AVWSCC--LDANALFSASGSADFTAKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHL 116
V L +LF S + D +WD T H+ + H V +F+ +
Sbjct: 233 VVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 117 LL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+L TG +K + ++DL + I V W ++TIL+S + +WD
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 34 LVSASKDSSPML-------RNGETGDWIGTFEGHKGAVWSCC--LDANALFSASGSADFT 84
L+SAS D + L + G+ D F GH V L +LF S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 85 AKLWDA---LTGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPR 139
+WD T H + H V +F+ + +L TG +K + ++DL
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+ I V W ++TIL+S + +WD
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 34 LVSASKDSSPML-------RNGETGDWIGTFEGHKGAVWSCC--LDANALFSASGSADFT 84
L+SAS D + L + G+ D F GH V L +LF S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 85 AKLWDA---LTGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPR 139
+WD T H + H V +F+ + +L TG +K + ++DL
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+ I V W ++TIL+S + +WD
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3KQ5|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Coxiella Burnetii
Length = 393
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 132 NRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
N P+A P R S+G + VA +Q I + + ++ W+ SG ++ +ETK
Sbjct: 94 NHPEATPLERYALFSAGLLLEVAHAVVNQKIFITDEEGNFIKQWNPFSGPLIDDVETK 151
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158
+EH IV + ++G + ++++DL + +++ A H D
Sbjct: 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSP 189
LS C++ + LWD R K + +P
Sbjct: 184 VFLS-CSEDNRILLWDTRCPKPASQIGCSAP 213
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202
+ D+G + L D S KIV+ ++T V + +S GRY+
Sbjct: 154 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYL 193
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202
+ D+G + L D S KIV+ ++T V + +S GRY+
Sbjct: 154 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYL 193
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202
+ D+G + L D S KIV+ ++T V + +S GRY+
Sbjct: 154 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYL 193
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
H++ TGG + +L I+D+ + P + + V + S+ L +C++ G + WD
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Query: 175 ARS 177
A +
Sbjct: 310 AST 312
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTA 205
VAW + Q +L S + +WD +G V TL + S + SRDG I T+
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDAPPREVGNSSGSIRTVAWLHSD-Q 158
H ++ L T +K ++IF++ + G + V W H
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 159 TILSSCTDSGGVRLWDARSGKIVQ 182
TIL+SC+ G V +W +G+ Q
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQ 91
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDAPPREVGNSSGSIRTVAWLHSD-Q 158
H ++ L T +K ++IF++ + G + V W H
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 159 TILSSCTDSGGVRLWDARSGKIVQ 182
TIL+SC+ G V +W +G+ Q
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQ 93
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
E + +G + +V+W + TILSS D G VRLW A
Sbjct: 301 EHDDHNGEVWSVSW-NLTGTILSSAGDDGKVRLWKA 335
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
E + +G + +V+W + TILSS D G VRLW A
Sbjct: 301 EHDDHNGEVWSVSW-NLTGTILSSAGDDGKVRLWKA 335
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
E + +G + +V+W + TILSS D G VRLW A
Sbjct: 299 EHDDHNGEVWSVSW-NLTGTILSSAGDDGKVRLWKA 333
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTA 205
VAW + Q +L S + +WD +G V TL + S + SRDG I T+
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,727,959
Number of Sequences: 62578
Number of extensions: 367126
Number of successful extensions: 1400
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 266
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)