Query 024676
Match_columns 264
No_of_seqs 136 out of 1403
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0278 Serine/threonine kinas 100.0 1.4E-52 2.9E-57 316.1 16.6 259 4-264 2-260 (334)
2 KOG0272 U4/U6 small nuclear ri 100.0 1E-43 2.2E-48 284.9 17.9 246 7-256 208-458 (459)
3 KOG0279 G protein beta subunit 100.0 2E-41 4.4E-46 259.0 27.7 251 2-258 48-313 (315)
4 KOG0272 U4/U6 small nuclear ri 100.0 1E-42 2.2E-47 279.2 20.9 246 13-263 172-423 (459)
5 KOG0271 Notchless-like WD40 re 100.0 5E-42 1.1E-46 272.5 22.0 242 13-261 112-442 (480)
6 KOG0279 G protein beta subunit 100.0 6.3E-40 1.4E-44 250.8 26.4 248 11-263 10-267 (315)
7 KOG0316 Conserved WD40 repeat- 100.0 1.4E-38 3.1E-43 238.4 23.0 246 10-263 11-262 (307)
8 KOG0271 Notchless-like WD40 re 100.0 2.8E-37 6E-42 245.5 21.8 242 12-256 196-479 (480)
9 KOG0295 WD40 repeat-containing 100.0 6.5E-37 1.4E-41 241.8 22.0 242 12-257 146-405 (406)
10 KOG0286 G-protein beta subunit 100.0 2E-35 4.2E-40 227.6 28.8 252 6-263 45-308 (343)
11 KOG0263 Transcription initiati 100.0 3.5E-36 7.6E-41 257.9 24.4 244 10-259 372-650 (707)
12 KOG0263 Transcription initiati 100.0 1.8E-36 4E-41 259.6 20.4 212 1-217 436-650 (707)
13 KOG0315 G-protein beta subunit 100.0 6.2E-35 1.3E-39 220.4 25.8 241 18-263 42-293 (311)
14 KOG0643 Translation initiation 100.0 9.9E-35 2.2E-39 221.3 26.5 238 8-249 2-253 (327)
15 KOG0273 Beta-transducin family 100.0 8.1E-35 1.7E-39 236.7 26.7 237 16-258 235-523 (524)
16 KOG0266 WD40 repeat-containing 100.0 1.1E-34 2.3E-39 251.3 29.4 244 15-263 158-414 (456)
17 KOG0276 Vesicle coat complex C 100.0 2.2E-35 4.7E-40 247.4 21.8 248 12-262 9-261 (794)
18 KOG0282 mRNA splicing factor [ 100.0 3.8E-36 8.3E-41 245.1 16.5 241 12-256 210-503 (503)
19 KOG0265 U5 snRNP-specific prot 100.0 1.3E-34 2.8E-39 223.8 23.8 244 10-260 41-298 (338)
20 KOG0283 WD40 repeat-containing 100.0 5.1E-35 1.1E-39 252.4 23.7 237 14-258 265-576 (712)
21 KOG0293 WD40 repeat-containing 100.0 2.7E-35 5.9E-40 236.2 20.4 249 10-263 218-475 (519)
22 KOG0285 Pleiotropic regulator 100.0 1.5E-34 3.2E-39 228.4 21.8 244 11-261 146-392 (460)
23 KOG0319 WD40-repeat-containing 100.0 1.3E-34 2.8E-39 246.5 21.3 239 11-256 360-617 (775)
24 KOG0286 G-protein beta subunit 100.0 3.6E-33 7.8E-38 215.2 26.9 233 17-256 98-343 (343)
25 KOG0295 WD40 repeat-containing 100.0 1.9E-34 4E-39 228.0 19.2 244 13-262 105-368 (406)
26 KOG0315 G-protein beta subunit 100.0 5.2E-33 1.1E-37 210.0 25.6 224 32-260 11-247 (311)
27 KOG0284 Polyadenylation factor 100.0 7.4E-35 1.6E-39 233.2 14.8 242 16-262 96-341 (464)
28 KOG0318 WD40 repeat stress pro 100.0 3.9E-32 8.5E-37 223.8 30.2 242 13-259 187-561 (603)
29 KOG0266 WD40 repeat-containing 100.0 1.9E-32 4E-37 237.4 27.7 240 13-257 200-453 (456)
30 KOG0281 Beta-TrCP (transducin 100.0 1.7E-34 3.7E-39 227.4 13.0 232 14-262 195-432 (499)
31 KOG0291 WD40-repeat-containing 100.0 4.7E-32 1E-36 231.5 28.0 244 13-262 347-616 (893)
32 cd00200 WD40 WD40 domain, foun 100.0 3.1E-31 6.7E-36 214.8 30.8 247 11-263 4-254 (289)
33 KOG0645 WD40 repeat protein [G 100.0 2.1E-31 4.7E-36 203.4 25.7 238 13-258 58-311 (312)
34 PLN00181 protein SPA1-RELATED; 100.0 1.1E-30 2.3E-35 241.2 35.7 243 10-257 526-792 (793)
35 PTZ00421 coronin; Provisional 100.0 6.2E-31 1.3E-35 227.8 30.6 226 9-237 68-313 (493)
36 KOG0276 Vesicle coat complex C 100.0 5.9E-32 1.3E-36 226.8 22.8 235 13-252 52-293 (794)
37 KOG0291 WD40-repeat-containing 100.0 9.1E-31 2E-35 223.7 28.7 245 15-263 306-555 (893)
38 cd00200 WD40 WD40 domain, foun 100.0 7.1E-30 1.5E-34 206.8 32.3 241 10-256 45-289 (289)
39 KOG0284 Polyadenylation factor 100.0 5.3E-33 1.2E-37 222.6 13.3 239 11-256 133-378 (464)
40 KOG0265 U5 snRNP-specific prot 100.0 3.6E-31 7.7E-36 204.8 22.9 238 11-254 85-334 (338)
41 PLN00181 protein SPA1-RELATED; 100.0 4.8E-30 1E-34 236.9 33.8 241 13-260 480-740 (793)
42 KOG0274 Cdc4 and related F-box 100.0 6.9E-31 1.5E-35 228.1 26.2 240 12-263 245-487 (537)
43 KOG0273 Beta-transducin family 100.0 7E-31 1.5E-35 213.9 23.6 246 13-262 175-486 (524)
44 KOG0296 Angio-associated migra 100.0 1.8E-30 3.9E-35 205.6 25.2 247 10-263 58-361 (399)
45 KOG1407 WD40 repeat protein [F 100.0 7.3E-31 1.6E-35 199.6 22.0 244 13-263 17-266 (313)
46 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-29 3.9E-34 196.7 30.0 252 4-263 2-267 (311)
47 PTZ00421 coronin; Provisional 100.0 1.1E-29 2.4E-34 220.0 31.6 252 6-263 10-295 (493)
48 KOG0292 Vesicle coat complex C 100.0 6.4E-31 1.4E-35 228.1 23.3 250 2-257 37-320 (1202)
49 KOG0310 Conserved WD40 repeat- 100.0 1.6E-30 3.4E-35 212.6 24.1 240 14-260 66-311 (487)
50 KOG0319 WD40-repeat-containing 100.0 1.4E-30 3E-35 222.0 24.8 244 13-261 320-580 (775)
51 KOG0281 Beta-TrCP (transducin 100.0 2.7E-32 5.9E-37 215.1 13.1 244 2-261 223-480 (499)
52 KOG0275 Conserved WD40 repeat- 100.0 1.7E-31 3.8E-36 209.0 16.7 242 14-262 211-471 (508)
53 KOG0645 WD40 repeat protein [G 100.0 2.6E-29 5.6E-34 192.1 27.6 239 10-258 8-261 (312)
54 KOG0278 Serine/threonine kinas 100.0 1E-31 2.2E-36 203.2 14.0 243 11-262 54-301 (334)
55 KOG0268 Sof1-like rRNA process 100.0 5.3E-32 1.2E-36 214.1 13.0 250 3-261 51-305 (433)
56 KOG0313 Microtubule binding pr 100.0 2.8E-30 6E-35 205.4 22.5 241 13-261 102-379 (423)
57 KOG0294 WD40 repeat-containing 100.0 6.3E-30 1.4E-34 199.2 23.9 242 10-260 37-283 (362)
58 KOG0277 Peroxisomal targeting 100.0 1.1E-30 2.3E-35 198.0 18.9 240 15-257 59-308 (311)
59 KOG0285 Pleiotropic regulator 100.0 2.5E-30 5.4E-35 204.5 20.8 239 12-257 189-438 (460)
60 KOG0288 WD40 repeat protein Ti 100.0 2.4E-31 5.2E-36 213.4 14.8 243 11-262 170-421 (459)
61 KOG0313 Microtubule binding pr 100.0 1.5E-29 3.3E-34 201.2 24.0 243 8-256 136-416 (423)
62 KOG0292 Vesicle coat complex C 100.0 3E-30 6.5E-35 224.0 21.5 243 13-260 6-282 (1202)
63 PTZ00420 coronin; Provisional 100.0 8.8E-29 1.9E-33 215.8 30.0 223 36-261 49-296 (568)
64 KOG0310 Conserved WD40 repeat- 100.0 4.8E-30 1E-34 209.8 19.6 246 13-263 23-273 (487)
65 KOG0640 mRNA cleavage stimulat 100.0 1.1E-29 2.4E-34 197.7 20.7 213 10-226 106-345 (430)
66 PTZ00420 coronin; Provisional 100.0 1.5E-28 3.3E-33 214.3 29.9 226 10-238 68-317 (568)
67 KOG0274 Cdc4 and related F-box 100.0 5.3E-29 1.2E-33 216.4 25.0 238 13-263 204-446 (537)
68 KOG0293 WD40 repeat-containing 100.0 2.1E-29 4.6E-34 202.4 20.1 248 4-258 257-513 (519)
69 KOG0305 Anaphase promoting com 100.0 1.6E-28 3.5E-33 207.0 25.2 240 13-259 214-462 (484)
70 KOG0296 Angio-associated migra 100.0 3.8E-28 8.3E-33 192.4 25.6 247 8-258 98-398 (399)
71 KOG0289 mRNA splicing factor [ 100.0 1.9E-28 4E-33 198.1 23.9 243 10-257 255-505 (506)
72 KOG0288 WD40 repeat protein Ti 100.0 1.6E-29 3.4E-34 203.1 17.5 241 6-255 209-458 (459)
73 KOG0300 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 192.3 20.1 241 12-258 144-428 (481)
74 KOG0643 Translation initiation 100.0 1.2E-28 2.6E-33 188.2 19.4 242 12-259 48-318 (327)
75 KOG0318 WD40 repeat stress pro 100.0 1.8E-27 3.8E-32 196.5 27.5 246 10-261 53-353 (603)
76 KOG0647 mRNA export protein (c 100.0 4.6E-28 1E-32 187.8 21.5 237 15-259 26-282 (347)
77 KOG0264 Nucleosome remodeling 100.0 9.1E-28 2E-32 194.9 22.1 244 13-258 121-404 (422)
78 KOG0306 WD40-repeat-containing 100.0 1E-27 2.2E-32 205.1 22.0 234 19-258 415-664 (888)
79 KOG0289 mRNA splicing factor [ 100.0 3.3E-27 7.2E-32 190.8 23.0 236 17-257 220-461 (506)
80 KOG0308 Conserved WD40 repeat- 100.0 3.7E-28 8.1E-33 204.8 18.0 241 15-259 20-286 (735)
81 KOG0316 Conserved WD40 repeat- 100.0 2.1E-27 4.7E-32 178.4 19.6 237 9-256 52-297 (307)
82 KOG1036 Mitotic spindle checkp 100.0 4.9E-27 1.1E-31 182.5 22.2 236 16-262 13-266 (323)
83 KOG0277 Peroxisomal targeting 100.0 3.6E-28 7.8E-33 184.4 15.3 212 2-215 89-308 (311)
84 KOG0282 mRNA splicing factor [ 100.0 5.2E-29 1.1E-33 203.6 11.6 208 52-262 205-466 (503)
85 KOG0301 Phospholipase A2-activ 100.0 6.8E-27 1.5E-31 198.5 22.8 233 12-258 53-288 (745)
86 KOG0299 U3 snoRNP-associated p 100.0 2.9E-26 6.3E-31 186.5 22.5 246 9-260 135-412 (479)
87 KOG0275 Conserved WD40 repeat- 100.0 3.9E-27 8.4E-32 184.7 15.3 239 14-256 261-507 (508)
88 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-24 2.4E-29 170.1 28.3 237 14-258 54-303 (311)
89 KOG0300 WD40 repeat-containing 99.9 4.2E-26 9.1E-31 178.4 18.8 247 7-259 181-477 (481)
90 KOG0283 WD40 repeat-containing 99.9 2.7E-26 5.8E-31 198.8 19.0 199 12-215 365-575 (712)
91 KOG0772 Uncharacterized conser 99.9 8.9E-26 1.9E-30 186.2 20.7 248 10-262 161-449 (641)
92 KOG0647 mRNA export protein (c 99.9 2.7E-25 5.9E-30 172.5 22.2 235 6-248 62-313 (347)
93 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.3E-24 1.6E-28 174.4 31.5 243 13-263 28-284 (300)
94 KOG0299 U3 snoRNP-associated p 99.9 1.7E-25 3.7E-30 182.1 20.8 231 14-252 200-450 (479)
95 KOG4283 Transcription-coupled 99.9 1.1E-24 2.4E-29 168.9 23.6 203 14-219 41-279 (397)
96 KOG0269 WD40 repeat-containing 99.9 1.8E-26 3.8E-31 198.1 15.0 240 18-260 89-342 (839)
97 KOG0270 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 181.1 20.2 231 30-262 191-453 (463)
98 KOG0301 Phospholipase A2-activ 99.9 3.4E-25 7.4E-30 188.2 22.4 235 10-258 8-249 (745)
99 KOG1407 WD40 repeat protein [F 99.9 3E-24 6.4E-29 163.7 25.1 247 6-258 54-311 (313)
100 KOG0640 mRNA cleavage stimulat 99.9 8.6E-26 1.9E-30 176.1 16.8 207 55-263 106-340 (430)
101 KOG0772 Uncharacterized conser 99.9 2.3E-25 5E-30 183.8 20.2 250 1-255 199-484 (641)
102 KOG0264 Nucleosome remodeling 99.9 4E-25 8.7E-30 179.6 19.1 205 10-216 171-404 (422)
103 KOG0973 Histone transcription 99.9 5.2E-24 1.1E-28 189.0 25.5 250 8-262 5-316 (942)
104 KOG0641 WD40 repeat protein [G 99.9 5.4E-23 1.2E-27 154.2 26.9 237 14-258 30-303 (350)
105 KOG4328 WD40 protein [Function 99.9 5.3E-24 1.1E-28 173.4 22.3 255 7-263 177-455 (498)
106 KOG1332 Vesicle coat complex C 99.9 2.1E-24 4.6E-29 163.1 17.4 241 12-258 7-286 (299)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-22 4.2E-27 165.9 30.0 228 32-263 2-242 (300)
108 KOG0973 Histone transcription 99.9 1.2E-23 2.6E-28 186.7 24.0 245 13-261 66-358 (942)
109 KOG0641 WD40 repeat protein [G 99.9 5.7E-23 1.2E-27 154.1 23.1 197 14-216 87-349 (350)
110 KOG1332 Vesicle coat complex C 99.9 3.3E-24 7.1E-29 162.1 15.9 205 11-216 51-286 (299)
111 KOG2096 WD40 repeat protein [G 99.9 8.3E-23 1.8E-27 160.0 24.0 243 11-260 81-404 (420)
112 KOG0306 WD40-repeat-containing 99.9 6.2E-23 1.3E-27 176.1 23.5 243 12-262 369-626 (888)
113 KOG0302 Ribosome Assembly prot 99.9 9.7E-23 2.1E-27 162.6 21.5 241 13-256 148-436 (440)
114 KOG1274 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 175.4 26.1 238 14-259 11-263 (933)
115 KOG0302 Ribosome Assembly prot 99.9 4.5E-23 9.7E-28 164.5 18.1 170 6-177 201-379 (440)
116 KOG0267 Microtubule severing p 99.9 1.5E-24 3.2E-29 185.2 10.2 231 14-250 26-260 (825)
117 KOG1036 Mitotic spindle checkp 99.9 4.7E-22 1E-26 154.9 22.9 227 13-248 51-294 (323)
118 KOG0303 Actin-binding protein 99.9 1.2E-22 2.7E-27 162.9 20.0 204 12-219 77-297 (472)
119 KOG0267 Microtubule severing p 99.9 2E-24 4.3E-29 184.4 10.1 191 12-207 66-258 (825)
120 KOG1273 WD40 repeat protein [G 99.9 1.9E-22 4E-27 157.8 19.9 238 19-262 26-284 (405)
121 KOG0305 Anaphase promoting com 99.9 4.5E-22 9.8E-27 168.2 23.1 228 31-262 188-423 (484)
122 KOG0294 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 153.0 21.8 200 13-218 80-283 (362)
123 KOG0270 WD40 repeat-containing 99.9 1.2E-22 2.6E-27 165.0 16.5 206 13-221 240-454 (463)
124 KOG0308 Conserved WD40 repeat- 99.9 1.7E-22 3.6E-27 171.0 16.7 240 12-257 69-326 (735)
125 KOG0269 WD40 repeat-containing 99.9 8.4E-23 1.8E-27 175.7 15.2 185 11-197 128-319 (839)
126 KOG1408 WD40 repeat protein [F 99.9 1.8E-21 4E-26 166.5 22.1 256 2-258 355-713 (1080)
127 KOG0646 WD40 repeat protein [G 99.9 9.6E-22 2.1E-26 160.6 19.3 204 16-225 81-316 (476)
128 KOG0321 WD40 repeat-containing 99.9 8.4E-22 1.8E-26 166.5 19.4 244 13-260 97-393 (720)
129 KOG2055 WD40 repeat protein [G 99.9 3.4E-20 7.3E-25 151.5 24.8 196 15-216 212-417 (514)
130 KOG2445 Nuclear pore complex c 99.9 1.2E-19 2.6E-24 141.6 26.5 241 12-257 9-317 (361)
131 KOG0321 WD40 repeat-containing 99.9 8.3E-21 1.8E-25 160.5 20.9 240 21-261 54-350 (720)
132 KOG2048 WD40 repeat protein [G 99.9 8.3E-20 1.8E-24 155.4 26.6 240 15-260 24-277 (691)
133 KOG0307 Vesicle coat complex C 99.9 3.7E-22 8.1E-27 178.2 12.2 203 62-264 65-290 (1049)
134 KOG4328 WD40 protein [Function 99.9 2.5E-20 5.3E-25 152.2 20.0 252 3-257 221-494 (498)
135 KOG0268 Sof1-like rRNA process 99.9 5.8E-21 1.3E-25 151.9 15.7 243 9-264 102-351 (433)
136 KOG1538 Uncharacterized conser 99.9 2.3E-20 5E-25 158.9 19.9 228 17-256 13-250 (1081)
137 KOG0639 Transducin-like enhanc 99.9 1E-20 2.3E-25 156.2 16.6 236 15-257 464-703 (705)
138 KOG2919 Guanine nucleotide-bin 99.9 9E-20 1.9E-24 143.3 20.9 238 19-261 52-331 (406)
139 KOG1034 Transcriptional repres 99.9 1.4E-20 3.1E-25 147.9 16.4 240 15-258 88-383 (385)
140 KOG0642 Cell-cycle nuclear pro 99.9 8.3E-21 1.8E-25 158.5 15.9 245 8-258 286-561 (577)
141 KOG0646 WD40 repeat protein [G 99.9 1.9E-19 4.1E-24 147.3 22.8 229 33-262 52-311 (476)
142 KOG0649 WD40 repeat protein [G 99.9 2.9E-19 6.3E-24 135.5 22.0 221 27-257 18-273 (325)
143 KOG1539 WD repeat protein [Gen 99.9 4.7E-20 1E-24 160.1 19.2 197 17-218 449-650 (910)
144 KOG0639 Transducin-like enhanc 99.9 1.6E-20 3.4E-25 155.1 15.4 242 13-261 416-666 (705)
145 KOG4378 Nuclear protein COP1 [ 99.9 7.5E-20 1.6E-24 150.9 18.5 235 18-259 36-281 (673)
146 KOG1274 WD40 repeat protein [G 99.9 6.3E-19 1.4E-23 154.6 24.6 205 7-217 47-263 (933)
147 KOG0307 Vesicle coat complex C 99.8 1.3E-20 2.8E-25 168.5 13.8 246 15-260 63-329 (1049)
148 KOG1539 WD repeat protein [Gen 99.8 3.5E-19 7.5E-24 154.8 22.1 219 34-256 414-646 (910)
149 KOG0303 Actin-binding protein 99.8 8.6E-20 1.9E-24 146.7 17.0 201 56-259 76-295 (472)
150 KOG4378 Nuclear protein COP1 [ 99.8 1.3E-19 2.8E-24 149.6 17.1 205 32-236 92-302 (673)
151 KOG1188 WD40 repeat protein [G 99.8 2.4E-19 5.2E-24 141.7 17.7 201 17-217 22-243 (376)
152 KOG2106 Uncharacterized conser 99.8 8.3E-18 1.8E-22 139.2 27.1 229 17-258 247-521 (626)
153 KOG1034 Transcriptional repres 99.8 5.2E-20 1.1E-24 144.8 11.9 203 9-215 128-382 (385)
154 KOG1063 RNA polymerase II elon 99.8 4.3E-18 9.3E-23 145.4 22.6 253 5-259 180-603 (764)
155 KOG4283 Transcription-coupled 99.8 4E-18 8.8E-23 132.6 20.4 239 14-258 99-365 (397)
156 KOG4227 WD40 repeat protein [G 99.8 2.2E-18 4.8E-23 138.8 19.3 240 13-257 53-321 (609)
157 KOG0650 WD40 repeat nucleolar 99.8 3.2E-18 6.9E-23 144.2 20.6 239 10-256 394-678 (733)
158 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.4E-21 134.4 32.1 246 10-262 149-404 (466)
159 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-16 4.2E-21 134.5 31.7 247 11-262 60-318 (466)
160 KOG2106 Uncharacterized conser 99.8 6.3E-17 1.4E-21 134.0 27.2 235 17-260 201-479 (626)
161 KOG1273 WD40 repeat protein [G 99.8 4.5E-18 9.8E-23 133.4 19.3 192 64-258 26-226 (405)
162 KOG2048 WD40 repeat protein [G 99.8 3.1E-17 6.6E-22 139.9 25.8 236 11-255 63-316 (691)
163 KOG2445 Nuclear pore complex c 99.8 2.5E-17 5.4E-22 128.8 20.6 200 58-258 10-256 (361)
164 KOG1408 WD40 repeat protein [F 99.8 2.4E-18 5.2E-23 147.6 16.0 204 12-217 497-714 (1080)
165 KOG2096 WD40 repeat protein [G 99.8 1.7E-17 3.8E-22 130.4 18.9 194 15-214 186-400 (420)
166 KOG0290 Conserved WD40 repeat- 99.8 1.3E-17 2.8E-22 129.5 16.9 196 15-212 149-361 (364)
167 KOG0650 WD40 repeat nucleolar 99.8 2.5E-17 5.4E-22 138.8 20.0 205 55-260 394-639 (733)
168 KOG1310 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 140.7 16.1 213 10-225 44-312 (758)
169 KOG1587 Cytoplasmic dynein int 99.8 1E-16 2.2E-21 139.3 23.5 244 12-258 238-516 (555)
170 KOG2919 Guanine nucleotide-bin 99.8 3.1E-17 6.7E-22 129.2 18.0 219 27-248 119-360 (406)
171 KOG2055 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 136.2 16.8 212 3-217 289-513 (514)
172 KOG0644 Uncharacterized conser 99.8 1.6E-18 3.5E-23 150.8 11.3 243 12-261 186-471 (1113)
173 KOG1007 WD repeat protein TSSC 99.8 7.4E-17 1.6E-21 125.2 19.0 244 11-258 58-361 (370)
174 KOG1063 RNA polymerase II elon 99.8 3.1E-17 6.6E-22 140.3 17.4 201 13-216 522-763 (764)
175 PRK01742 tolB translocation pr 99.8 1.4E-16 3.1E-21 137.8 21.8 210 40-257 183-400 (429)
176 PRK11028 6-phosphogluconolacto 99.8 8.4E-15 1.8E-19 122.7 30.5 237 17-258 35-304 (330)
177 KOG1517 Guanine nucleotide bin 99.8 1.9E-16 4.1E-21 141.2 20.4 241 18-264 1066-1338(1387)
178 KOG1538 Uncharacterized conser 99.7 7.4E-17 1.6E-21 137.8 16.2 237 11-258 48-293 (1081)
179 KOG1009 Chromatin assembly com 99.7 2.2E-16 4.8E-21 127.6 17.6 124 5-131 54-194 (434)
180 KOG0642 Cell-cycle nuclear pro 99.7 4.1E-17 8.9E-22 136.6 13.2 212 4-222 332-567 (577)
181 KOG0290 Conserved WD40 repeat- 99.7 1.3E-15 2.8E-20 118.5 20.3 242 17-260 45-320 (364)
182 PRK11028 6-phosphogluconolacto 99.7 2.9E-14 6.2E-19 119.5 27.9 223 35-259 6-259 (330)
183 KOG1310 WD40 repeat protein [G 99.7 1.3E-16 2.7E-21 133.6 13.2 209 54-263 43-308 (758)
184 KOG0771 Prolactin regulatory e 99.7 5.1E-16 1.1E-20 126.0 15.2 191 20-215 148-353 (398)
185 KOG1009 Chromatin assembly com 99.7 3.9E-15 8.4E-20 120.5 19.8 157 17-177 14-196 (434)
186 KOG1517 Guanine nucleotide bin 99.7 3.9E-15 8.5E-20 133.0 21.3 242 18-262 1111-1385(1387)
187 KOG2110 Uncharacterized conser 99.7 1.2E-13 2.6E-18 110.8 25.8 233 17-259 6-249 (391)
188 PRK01742 tolB translocation pr 99.7 1.6E-14 3.4E-19 125.1 22.7 217 9-237 196-425 (429)
189 KOG1963 WD40 repeat protein [G 99.7 5.2E-14 1.1E-18 123.6 24.8 243 14-260 203-489 (792)
190 KOG1007 WD repeat protein TSSC 99.7 1.2E-14 2.6E-19 113.1 18.0 157 15-176 122-289 (370)
191 KOG1240 Protein kinase contain 99.7 1.4E-14 3.1E-19 131.1 20.5 215 46-261 1034-1276(1431)
192 KOG1334 WD40 repeat protein [G 99.7 2.5E-15 5.4E-20 124.2 14.2 250 11-263 137-429 (559)
193 KOG1445 Tumor-specific antigen 99.7 1.4E-15 2.9E-20 129.5 12.8 198 17-216 628-844 (1012)
194 KOG1963 WD40 repeat protein [G 99.7 7.4E-14 1.6E-18 122.7 23.1 256 1-262 1-379 (792)
195 KOG1523 Actin-related protein 99.7 7.7E-14 1.7E-18 110.0 20.9 232 12-249 6-269 (361)
196 KOG1272 WD40-repeat-containing 99.7 9.7E-16 2.1E-20 125.9 10.7 225 21-256 134-360 (545)
197 PRK05137 tolB translocation pr 99.6 5.3E-13 1.1E-17 115.9 27.9 215 42-261 183-415 (435)
198 PF02239 Cytochrom_D1: Cytochr 99.6 2.2E-12 4.7E-17 108.9 29.8 239 21-263 41-352 (369)
199 PRK04922 tolB translocation pr 99.6 4.8E-13 1E-17 116.0 25.1 214 42-260 185-413 (433)
200 PRK03629 tolB translocation pr 99.6 1.5E-12 3.3E-17 112.6 28.1 212 42-258 180-406 (429)
201 KOG3881 Uncharacterized conser 99.6 1.2E-13 2.6E-18 111.4 19.5 219 11-236 100-340 (412)
202 KOG1524 WD40 repeat-containing 99.6 3E-14 6.5E-19 119.3 16.2 208 32-255 76-283 (737)
203 KOG0322 G-protein beta subunit 99.6 3.3E-14 7.2E-19 109.3 15.2 240 8-257 6-322 (323)
204 KOG0644 Uncharacterized conser 99.6 2.6E-16 5.6E-21 137.3 3.7 204 54-263 183-431 (1113)
205 KOG1524 WD40 repeat-containing 99.6 4.8E-14 1E-18 118.0 16.8 175 13-207 101-276 (737)
206 KOG0771 Prolactin regulatory e 99.6 4.6E-14 9.9E-19 114.8 16.1 192 65-258 148-354 (398)
207 PRK02889 tolB translocation pr 99.6 8E-13 1.7E-17 114.4 24.9 213 42-257 177-402 (427)
208 PRK05137 tolB translocation pr 99.6 7.8E-13 1.7E-17 114.8 24.9 203 10-219 195-415 (435)
209 PRK04922 tolB translocation pr 99.6 5.2E-13 1.1E-17 115.8 23.5 203 9-218 196-413 (433)
210 KOG1240 Protein kinase contain 99.6 6.5E-13 1.4E-17 120.6 24.3 246 13-261 1045-1337(1431)
211 KOG0649 WD40 repeat protein [G 99.6 1E-12 2.2E-17 100.2 21.7 231 13-255 59-313 (325)
212 KOG1354 Serine/threonine prote 99.6 2.2E-13 4.9E-18 108.5 18.7 244 14-262 23-363 (433)
213 KOG3881 Uncharacterized conser 99.6 4.3E-13 9.2E-18 108.3 20.5 244 16-263 55-325 (412)
214 KOG1188 WD40 repeat protein [G 99.6 7.7E-14 1.7E-18 110.8 15.9 188 74-262 41-246 (376)
215 KOG2111 Uncharacterized conser 99.6 6.2E-12 1.3E-16 99.3 25.6 172 41-217 75-257 (346)
216 PRK03629 tolB translocation pr 99.6 1.7E-12 3.6E-17 112.4 24.8 197 12-217 194-407 (429)
217 PF02239 Cytochrom_D1: Cytochr 99.6 2.7E-11 5.9E-16 102.3 30.0 190 33-222 8-208 (369)
218 PF08662 eIF2A: Eukaryotic tra 99.6 8.6E-13 1.9E-17 101.7 19.2 155 21-184 10-186 (194)
219 PF08662 eIF2A: Eukaryotic tra 99.6 2.1E-13 4.6E-18 105.1 15.8 116 10-132 53-179 (194)
220 KOG1587 Cytoplasmic dynein int 99.6 1.8E-12 3.8E-17 113.1 22.7 218 41-259 222-473 (555)
221 KOG2110 Uncharacterized conser 99.6 1.4E-12 3E-17 104.8 20.2 157 16-179 87-251 (391)
222 KOG1445 Tumor-specific antigen 99.6 2.2E-13 4.7E-18 116.3 15.7 205 11-217 74-294 (1012)
223 PRK02889 tolB translocation pr 99.6 4.1E-12 8.9E-17 110.0 24.2 197 12-215 191-402 (427)
224 KOG2321 WD40 repeat protein [G 99.5 3.3E-13 7.2E-18 113.9 16.0 193 21-217 138-344 (703)
225 KOG2139 WD40 repeat protein [G 99.5 2.8E-11 6E-16 97.3 24.8 242 9-257 133-430 (445)
226 TIGR02800 propeller_TolB tol-p 99.5 3.7E-11 8.1E-16 103.9 26.5 212 42-258 171-397 (417)
227 KOG1523 Actin-related protein 99.5 2.6E-12 5.6E-17 101.5 16.6 169 7-179 46-239 (361)
228 KOG4227 WD40 repeat protein [G 99.5 1.3E-11 2.7E-16 100.2 20.2 248 4-256 91-385 (609)
229 KOG0322 G-protein beta subunit 99.5 4.6E-13 1E-17 103.1 11.4 160 14-175 148-322 (323)
230 KOG2321 WD40 repeat protein [G 99.4 6.1E-11 1.3E-15 100.4 22.2 235 14-255 49-340 (703)
231 KOG0974 WD-repeat protein WDR6 99.4 1.5E-12 3.2E-17 116.6 13.1 146 28-177 142-289 (967)
232 KOG1334 WD40 repeat protein [G 99.4 2E-12 4.4E-17 107.2 12.6 242 13-257 182-465 (559)
233 KOG2394 WD40 protein DMR-N9 [G 99.4 1.3E-12 2.7E-17 109.6 10.4 92 18-112 292-384 (636)
234 KOG4497 Uncharacterized conser 99.4 5.3E-11 1.1E-15 94.7 18.6 234 19-257 51-390 (447)
235 KOG2111 Uncharacterized conser 99.4 5.8E-10 1.3E-14 88.3 24.4 229 20-259 9-257 (346)
236 KOG2394 WD40 protein DMR-N9 [G 99.4 2.6E-12 5.6E-17 107.8 11.4 136 17-155 220-384 (636)
237 PRK00178 tolB translocation pr 99.4 4E-10 8.6E-15 97.9 25.4 201 10-217 192-407 (430)
238 TIGR02800 propeller_TolB tol-p 99.4 2.5E-10 5.4E-15 98.7 24.1 188 10-204 183-381 (417)
239 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.9E-09 6.3E-14 88.5 28.3 233 28-263 54-335 (352)
240 PF10282 Lactonase: Lactonase, 99.4 7.5E-09 1.6E-13 87.2 31.3 237 21-261 41-327 (345)
241 PRK00178 tolB translocation pr 99.4 9E-10 2E-14 95.7 26.5 212 43-259 181-407 (430)
242 PRK01029 tolB translocation pr 99.4 1.8E-09 3.8E-14 93.5 27.2 201 18-222 186-409 (428)
243 KOG2139 WD40 repeat protein [G 99.4 1.7E-10 3.7E-15 92.8 18.5 189 62-252 99-305 (445)
244 PRK04792 tolB translocation pr 99.4 1.7E-09 3.7E-14 94.2 26.4 212 42-258 199-425 (448)
245 KOG1272 WD40-repeat-containing 99.4 3.1E-12 6.7E-17 105.6 8.8 181 17-205 210-397 (545)
246 PRK04792 tolB translocation pr 99.3 9.3E-10 2E-14 95.8 23.7 196 14-216 215-425 (448)
247 KOG0280 Uncharacterized conser 99.3 5.3E-10 1.1E-14 87.7 19.1 246 16-262 69-337 (339)
248 KOG4497 Uncharacterized conser 99.3 1.2E-11 2.7E-16 98.2 10.2 218 22-256 14-238 (447)
249 PLN02919 haloacid dehalogenase 99.3 1.1E-08 2.5E-13 97.1 31.2 236 21-262 572-892 (1057)
250 KOG4190 Uncharacterized conser 99.3 8.2E-12 1.8E-16 105.5 8.1 203 55-261 729-951 (1034)
251 PRK01029 tolB translocation pr 99.3 4.4E-09 9.6E-14 91.0 25.0 219 42-262 166-407 (428)
252 KOG0974 WD-repeat protein WDR6 99.3 4.2E-10 9E-15 101.2 18.4 217 33-258 63-288 (967)
253 KOG4190 Uncharacterized conser 99.3 2.1E-11 4.6E-16 103.1 9.5 235 13-256 732-986 (1034)
254 KOG1064 RAVE (regulator of V-A 99.3 5.3E-11 1.2E-15 112.0 12.7 196 16-226 2208-2408(2439)
255 COG5170 CDC55 Serine/threonine 99.2 2.7E-10 5.8E-15 90.2 13.5 237 15-256 25-365 (460)
256 KOG4547 WD40 repeat-containing 99.2 1.9E-09 4.1E-14 91.7 18.3 187 70-258 2-220 (541)
257 KOG1064 RAVE (regulator of V-A 99.2 2.5E-10 5.3E-15 107.7 13.3 184 60-259 2207-2399(2439)
258 KOG4532 WD40-like repeat conta 99.2 2.6E-08 5.7E-13 77.5 20.4 205 21-226 72-292 (344)
259 TIGR03300 assembly_YfgL outer 99.2 6.6E-08 1.4E-12 82.6 25.3 223 30-263 64-302 (377)
260 TIGR03300 assembly_YfgL outer 99.2 4.7E-08 1E-12 83.5 24.4 224 30-263 104-343 (377)
261 KOG4547 WD40 repeat-containing 99.2 1.7E-09 3.8E-14 91.9 15.0 145 30-177 69-221 (541)
262 KOG3914 WD repeat protein WDR4 99.2 1.1E-09 2.4E-14 89.2 13.2 158 27-186 70-233 (390)
263 KOG2315 Predicted translation 99.1 2.2E-08 4.8E-13 85.0 20.7 115 143-262 268-393 (566)
264 PF13360 PQQ_2: PQQ-like domai 99.1 2.3E-08 5E-13 79.6 20.3 216 40-263 2-235 (238)
265 COG2706 3-carboxymuconate cycl 99.1 1.1E-06 2.4E-11 71.3 29.3 239 15-257 38-320 (346)
266 KOG0882 Cyclophilin-related pe 99.1 1.5E-09 3.3E-14 89.8 13.2 240 15-261 8-308 (558)
267 KOG1645 RING-finger-containing 99.1 1.8E-08 4E-13 82.4 18.1 241 11-258 188-461 (463)
268 KOG0280 Uncharacterized conser 99.1 7.5E-09 1.6E-13 81.4 14.2 153 21-178 126-286 (339)
269 KOG0309 Conserved WD40 repeat- 99.1 6.3E-09 1.4E-13 91.0 14.9 252 6-258 56-339 (1081)
270 KOG3914 WD repeat protein WDR4 99.1 4.7E-09 1E-13 85.6 13.3 155 107-263 67-228 (390)
271 PF00400 WD40: WD domain, G-be 99.1 5.3E-10 1.2E-14 62.6 5.7 39 51-89 1-39 (39)
272 PF10282 Lactonase: Lactonase, 99.0 1.8E-06 3.9E-11 72.9 28.5 224 34-258 2-275 (345)
273 KOG1409 Uncharacterized conser 99.0 2.5E-08 5.5E-13 80.0 15.5 161 13-178 65-272 (404)
274 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.8E-06 4E-11 72.0 26.5 212 41-263 27-292 (352)
275 PLN02919 haloacid dehalogenase 99.0 6.7E-07 1.5E-11 85.3 26.9 197 19-220 626-892 (1057)
276 KOG4714 Nucleoporin [Nuclear s 99.0 1.8E-08 3.9E-13 78.0 12.4 147 30-177 100-255 (319)
277 KOG2695 WD40 repeat protein [G 99.0 2.7E-09 5.9E-14 85.6 8.0 161 22-189 217-389 (425)
278 KOG2695 WD40 repeat protein [G 98.9 4.2E-09 9.1E-14 84.5 8.3 159 65-228 215-388 (425)
279 KOG1354 Serine/threonine prote 98.9 1.8E-07 3.8E-12 75.4 16.2 199 16-218 84-361 (433)
280 PF08450 SGL: SMP-30/Gluconola 98.9 1.6E-05 3.5E-10 63.7 29.3 216 21-247 4-245 (246)
281 PRK04043 tolB translocation pr 98.9 4.1E-06 9E-11 72.3 25.3 190 63-258 189-400 (419)
282 PRK04043 tolB translocation pr 98.9 5.6E-06 1.2E-10 71.5 25.8 191 18-217 189-401 (419)
283 KOG2066 Vacuolar assembly/sort 98.9 1.2E-07 2.5E-12 83.9 15.4 181 18-217 41-234 (846)
284 KOG0309 Conserved WD40 repeat- 98.8 4.3E-08 9.3E-13 86.0 11.9 207 9-217 107-340 (1081)
285 KOG2041 WD40 repeat protein [G 98.8 2.4E-07 5.2E-12 81.2 16.3 212 12-228 67-308 (1189)
286 COG4946 Uncharacterized protei 98.8 1.3E-06 2.9E-11 73.3 19.5 170 29-202 330-503 (668)
287 COG4946 Uncharacterized protei 98.8 5.1E-06 1.1E-10 69.9 22.2 119 11-133 354-478 (668)
288 PF15492 Nbas_N: Neuroblastoma 98.8 1.2E-05 2.6E-10 63.5 23.1 200 29-230 7-273 (282)
289 PF13360 PQQ_2: PQQ-like domai 98.8 1E-06 2.3E-11 70.1 17.7 186 30-221 35-235 (238)
290 KOG2315 Predicted translation 98.8 6.4E-06 1.4E-10 70.4 22.2 194 15-216 164-390 (566)
291 KOG1409 Uncharacterized conser 98.8 3.2E-06 6.9E-11 68.2 19.3 236 13-260 21-272 (404)
292 KOG2314 Translation initiation 98.8 6.1E-06 1.3E-10 70.6 21.4 231 19-257 252-572 (698)
293 KOG2041 WD40 repeat protein [G 98.8 4.9E-07 1.1E-11 79.3 15.4 156 16-177 14-187 (1189)
294 PF04762 IKI3: IKI3 family; I 98.7 1E-05 2.2E-10 76.2 25.1 233 16-257 75-378 (928)
295 PF07433 DUF1513: Protein of u 98.7 8.7E-06 1.9E-10 66.0 21.1 183 21-209 55-278 (305)
296 PRK11138 outer membrane biogen 98.7 1.8E-05 4E-10 68.0 24.1 225 31-263 120-358 (394)
297 PF00400 WD40: WD domain, G-be 98.7 4.7E-08 1E-12 54.5 5.5 36 9-47 4-39 (39)
298 KOG1832 HIV-1 Vpr-binding prot 98.7 6.9E-09 1.5E-13 92.5 2.8 201 8-224 1093-1299(1516)
299 KOG2314 Translation initiation 98.7 6.5E-06 1.4E-10 70.4 20.1 228 21-258 215-525 (698)
300 KOG1645 RING-finger-containing 98.7 1.4E-06 3E-11 71.7 15.4 206 55-262 187-423 (463)
301 KOG4532 WD40-like repeat conta 98.7 5.4E-06 1.2E-10 64.9 17.3 148 34-184 131-290 (344)
302 COG2706 3-carboxymuconate cycl 98.7 0.00011 2.4E-09 59.9 25.5 218 40-258 15-274 (346)
303 KOG1912 WD40 repeat protein [G 98.7 5.8E-06 1.3E-10 73.4 19.2 234 19-259 18-305 (1062)
304 COG5354 Uncharacterized protei 98.7 6E-05 1.3E-09 64.0 24.2 146 107-258 227-395 (561)
305 PRK11138 outer membrane biogen 98.6 1.7E-05 3.6E-10 68.3 21.2 223 31-263 69-317 (394)
306 PF11768 DUF3312: Protein of u 98.5 1.1E-05 2.4E-10 69.7 17.3 126 6-135 196-332 (545)
307 PF07433 DUF1513: Protein of u 98.5 0.0003 6.5E-09 57.2 26.6 221 22-250 10-278 (305)
308 KOG0882 Cyclophilin-related pe 98.5 3.6E-06 7.7E-11 70.3 13.3 215 7-225 44-314 (558)
309 KOG2114 Vacuolar assembly/sort 98.5 9.4E-05 2E-09 66.6 22.0 196 29-226 33-253 (933)
310 PF04762 IKI3: IKI3 family; I 98.5 0.00013 2.7E-09 69.0 23.5 227 16-259 209-457 (928)
311 cd00216 PQQ_DH Dehydrogenases 98.4 0.00014 3E-09 64.4 22.6 226 32-263 111-429 (488)
312 PF08450 SGL: SMP-30/Gluconola 98.4 0.0003 6.5E-09 56.4 22.6 174 19-199 42-237 (246)
313 PF06977 SdiA-regulated: SdiA- 98.4 0.00054 1.2E-08 54.7 26.9 197 12-212 17-246 (248)
314 COG5354 Uncharacterized protei 98.4 7.2E-05 1.6E-09 63.5 18.4 194 18-217 175-396 (561)
315 KOG1275 PAB-dependent poly(A) 98.4 8.5E-06 1.8E-10 73.5 13.0 142 31-175 187-341 (1118)
316 PRK02888 nitrous-oxide reducta 98.4 0.00024 5.2E-09 63.0 21.4 185 26-217 199-405 (635)
317 PF15492 Nbas_N: Neuroblastoma 98.4 0.00026 5.7E-09 56.1 19.5 166 17-187 43-270 (282)
318 KOG1832 HIV-1 Vpr-binding prot 98.4 3.8E-07 8.3E-12 81.8 4.2 192 55-261 1095-1294(1516)
319 PRK02888 nitrous-oxide reducta 98.4 9.7E-05 2.1E-09 65.5 18.8 184 69-259 200-405 (635)
320 COG5170 CDC55 Serine/threonine 98.3 1.1E-05 2.3E-10 64.6 11.5 195 61-259 26-310 (460)
321 KOG4714 Nucleoporin [Nuclear s 98.3 4.5E-06 9.8E-11 65.0 9.1 232 19-256 39-316 (319)
322 KOG1920 IkappaB kinase complex 98.3 0.00068 1.5E-08 63.5 24.0 196 17-219 69-325 (1265)
323 KOG1275 PAB-dependent poly(A) 98.3 5.5E-05 1.2E-09 68.5 16.3 180 31-216 147-342 (1118)
324 PF06433 Me-amine-dh_H: Methyl 98.3 0.0012 2.5E-08 54.5 22.0 233 28-263 44-325 (342)
325 KOG1912 WD40 repeat protein [G 98.3 8.1E-05 1.8E-09 66.4 16.2 203 13-216 52-304 (1062)
326 KOG3621 WD40 repeat-containing 98.2 5.3E-05 1.1E-09 66.8 13.9 193 29-226 43-255 (726)
327 PF00780 CNH: CNH domain; Int 98.2 0.0023 5E-08 52.1 26.4 218 30-263 6-260 (275)
328 PF11768 DUF3312: Protein of u 98.2 0.00026 5.7E-09 61.4 17.2 110 65-178 209-331 (545)
329 KOG1008 Uncharacterized conser 98.1 6.1E-07 1.3E-11 77.8 0.4 161 13-176 99-275 (783)
330 KOG1008 Uncharacterized conser 98.1 8.4E-07 1.8E-11 77.0 0.9 195 18-216 58-275 (783)
331 smart00320 WD40 WD40 repeats. 98.1 1.6E-05 3.5E-10 42.8 5.6 38 52-89 3-40 (40)
332 COG0823 TolB Periplasmic compo 98.0 0.0013 2.9E-08 56.8 18.8 171 51-224 182-366 (425)
333 KOG2066 Vacuolar assembly/sort 98.0 0.0011 2.3E-08 59.6 17.3 153 62-228 40-199 (846)
334 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0013 2.9E-08 45.1 14.0 102 19-126 2-108 (111)
335 COG0823 TolB Periplasmic compo 97.9 0.0013 2.8E-08 56.9 16.6 179 18-205 194-387 (425)
336 KOG2114 Vacuolar assembly/sort 97.9 0.0034 7.3E-08 57.0 18.8 187 68-258 30-243 (933)
337 cd00216 PQQ_DH Dehydrogenases 97.8 0.011 2.3E-07 52.5 21.6 226 32-263 62-379 (488)
338 KOG1920 IkappaB kinase complex 97.8 0.0071 1.5E-07 57.0 20.7 197 62-260 69-324 (1265)
339 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.011 2.3E-07 46.9 24.1 234 13-256 29-298 (354)
340 PF04053 Coatomer_WDAD: Coatom 97.7 0.0091 2E-07 52.0 19.0 145 57-216 28-173 (443)
341 PF04053 Coatomer_WDAD: Coatom 97.7 0.025 5.5E-07 49.2 21.0 217 18-258 34-262 (443)
342 PF02897 Peptidase_S9_N: Proly 97.6 0.036 7.9E-07 48.0 27.4 233 27-262 131-408 (414)
343 PF08553 VID27: VID27 cytoplas 97.6 0.0033 7.1E-08 57.9 15.3 141 31-175 493-646 (794)
344 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.013 2.8E-07 49.7 18.1 219 28-257 1-265 (353)
345 PF15390 DUF4613: Domain of un 97.5 0.032 7E-07 49.1 18.9 149 17-176 20-186 (671)
346 COG3204 Uncharacterized protei 97.5 0.036 7.9E-07 44.7 19.2 160 13-176 82-263 (316)
347 PF08596 Lgl_C: Lethal giant l 97.5 0.055 1.2E-06 46.5 23.4 188 59-249 84-327 (395)
348 KOG4640 Anaphase-promoting com 97.5 0.00079 1.7E-08 58.9 9.0 91 63-154 22-114 (665)
349 KOG4640 Anaphase-promoting com 97.5 0.0008 1.7E-08 58.9 9.0 91 18-112 22-115 (665)
350 PF08553 VID27: VID27 cytoplas 97.5 0.006 1.3E-07 56.3 15.0 136 77-215 498-646 (794)
351 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.037 8E-07 43.9 19.5 133 74-209 24-158 (354)
352 KOG3621 WD40 repeat-containing 97.4 0.005 1.1E-07 54.8 13.6 136 60-196 32-179 (726)
353 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.016 3.4E-07 39.9 13.0 92 156-253 13-109 (111)
354 COG3391 Uncharacterized conser 97.4 0.067 1.4E-06 45.9 24.7 194 30-226 84-293 (381)
355 PF08596 Lgl_C: Lethal giant l 97.4 0.043 9.4E-07 47.1 18.6 201 8-213 78-332 (395)
356 PHA02713 hypothetical protein; 97.4 0.015 3.3E-07 52.4 16.5 210 42-261 273-536 (557)
357 COG3391 Uncharacterized conser 97.4 0.072 1.6E-06 45.7 27.3 194 65-261 77-286 (381)
358 PF00780 CNH: CNH domain; Int 97.4 0.054 1.2E-06 44.0 20.3 147 71-222 5-171 (275)
359 PF03178 CPSF_A: CPSF A subuni 97.3 0.071 1.5E-06 44.6 22.7 208 42-255 3-262 (321)
360 smart00320 WD40 WD40 repeats. 97.3 0.00059 1.3E-08 36.2 4.6 34 11-47 7-40 (40)
361 COG3490 Uncharacterized protei 97.3 0.064 1.4E-06 43.2 17.5 195 66-263 72-315 (366)
362 COG3490 Uncharacterized protei 97.3 0.021 4.5E-07 45.9 14.0 182 29-213 123-345 (366)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.13 2.9E-06 46.1 25.6 150 32-181 121-338 (527)
364 PF04841 Vps16_N: Vps16, N-ter 97.2 0.11 2.4E-06 45.0 25.6 176 42-227 62-257 (410)
365 KOG3617 WD40 and TPR repeat-co 97.1 0.0023 4.9E-08 58.2 8.3 106 68-176 22-131 (1416)
366 KOG2395 Protein involved in va 97.1 0.018 3.9E-07 49.9 12.7 137 35-176 350-500 (644)
367 KOG4441 Proteins containing BT 97.1 0.089 1.9E-06 47.6 17.8 212 30-251 284-534 (571)
368 PF06433 Me-amine-dh_H: Methyl 97.1 0.14 3.1E-06 42.6 19.7 195 29-226 104-330 (342)
369 PF03178 CPSF_A: CPSF A subuni 97.0 0.18 3.9E-06 42.1 19.3 175 31-211 42-260 (321)
370 PF02897 Peptidase_S9_N: Proly 96.9 0.22 4.8E-06 43.1 21.2 192 65-258 127-357 (414)
371 KOG3617 WD40 and TPR repeat-co 96.9 0.0027 5.8E-08 57.8 6.6 104 22-132 21-131 (1416)
372 PF05096 Glu_cyclase_2: Glutam 96.9 0.17 3.6E-06 40.7 19.1 129 95-227 35-168 (264)
373 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.33 7.1E-06 43.6 21.0 186 74-263 70-338 (527)
374 KOG1897 Damage-specific DNA bi 96.7 0.59 1.3E-05 43.9 23.1 240 16-259 530-816 (1096)
375 PRK13616 lipoprotein LpqB; Pro 96.6 0.41 8.9E-06 43.5 18.1 168 40-215 328-524 (591)
376 TIGR03074 PQQ_membr_DH membran 96.5 0.77 1.7E-05 43.1 23.1 231 23-263 187-482 (764)
377 KOG2395 Protein involved in va 96.5 0.11 2.3E-06 45.4 12.9 139 75-216 348-500 (644)
378 PRK13616 lipoprotein LpqB; Pro 96.5 0.63 1.4E-05 42.4 18.6 181 18-208 351-560 (591)
379 COG3386 Gluconolactonase [Carb 96.4 0.45 9.8E-06 39.5 23.5 211 33-249 39-277 (307)
380 PHA02713 hypothetical protein; 96.4 0.17 3.6E-06 45.8 14.6 64 30-93 303-377 (557)
381 PF12234 Rav1p_C: RAVE protein 96.3 0.13 2.9E-06 46.5 13.0 107 107-215 34-155 (631)
382 PF12894 Apc4_WD40: Anaphase-p 96.2 0.018 3.9E-07 33.1 4.8 41 221-263 5-45 (47)
383 KOG2079 Vacuolar assembly/sort 96.1 0.037 8.1E-07 51.9 8.9 94 160-256 101-201 (1206)
384 KOG4499 Ca2+-binding protein R 96.0 0.39 8.4E-06 37.7 12.8 128 27-156 116-264 (310)
385 KOG2444 WD40 repeat protein [G 96.0 0.023 5E-07 44.0 6.1 102 31-132 70-177 (238)
386 KOG4441 Proteins containing BT 96.0 0.93 2E-05 41.2 17.0 148 30-181 332-504 (571)
387 KOG4499 Ca2+-binding protein R 95.9 0.62 1.3E-05 36.7 17.9 211 32-248 28-275 (310)
388 COG5167 VID27 Protein involved 95.9 0.36 7.8E-06 42.2 13.1 130 42-176 491-632 (776)
389 PF00930 DPPIV_N: Dipeptidyl p 95.8 1 2.2E-05 38.2 22.7 227 16-247 42-347 (353)
390 PF06977 SdiA-regulated: SdiA- 95.8 0.8 1.7E-05 36.7 24.5 195 56-255 16-247 (248)
391 KOG2079 Vacuolar assembly/sort 95.7 0.064 1.4E-06 50.4 8.7 95 32-130 100-201 (1206)
392 PF15390 DUF4613: Domain of un 95.7 0.64 1.4E-05 41.4 14.1 146 62-216 20-186 (671)
393 KOG2444 WD40 repeat protein [G 95.7 0.024 5.2E-07 43.9 4.9 67 26-92 109-178 (238)
394 PF14870 PSII_BNR: Photosynthe 95.6 1 2.3E-05 37.2 17.2 148 16-173 144-301 (302)
395 KOG1897 Damage-specific DNA bi 95.6 2.1 4.6E-05 40.5 21.7 236 22-262 586-860 (1096)
396 PHA03098 kelch-like protein; P 95.6 1 2.3E-05 40.5 16.0 184 72-260 294-513 (534)
397 PF14583 Pectate_lyase22: Olig 95.5 1.4 3E-05 37.5 24.3 236 22-262 36-332 (386)
398 PHA02790 Kelch-like protein; P 95.5 1.4 2.9E-05 39.2 15.9 144 30-180 271-427 (480)
399 PHA03098 kelch-like protein; P 95.4 1.3 2.8E-05 39.9 16.0 103 30-135 294-417 (534)
400 PF12894 Apc4_WD40: Anaphase-p 95.2 0.08 1.7E-06 30.4 5.0 29 62-90 12-40 (47)
401 PF12234 Rav1p_C: RAVE protein 95.1 2.4 5.2E-05 38.7 16.2 106 68-176 36-156 (631)
402 PF05694 SBP56: 56kDa selenium 95.0 2.2 4.7E-05 37.0 17.0 174 29-202 139-388 (461)
403 PF05096 Glu_cyclase_2: Glutam 94.9 1.6 3.5E-05 35.2 22.6 180 18-205 46-249 (264)
404 PHA02790 Kelch-like protein; P 94.8 2.6 5.6E-05 37.5 15.8 182 72-261 271-473 (480)
405 PF14761 HPS3_N: Hermansky-Pud 94.5 1.7 3.8E-05 33.7 15.9 110 107-218 22-165 (215)
406 PF07569 Hira: TUP1-like enhan 94.5 0.36 7.9E-06 37.9 8.7 59 157-216 22-95 (219)
407 TIGR02276 beta_rpt_yvtn 40-res 94.1 0.36 7.7E-06 26.5 5.9 41 155-195 1-41 (42)
408 PF10395 Utp8: Utp8 family; I 94.1 4.4 9.6E-05 37.1 15.4 160 61-225 129-314 (670)
409 PF14870 PSII_BNR: Photosynthe 93.9 3.1 6.8E-05 34.4 20.0 158 52-213 135-301 (302)
410 KOG1983 Tomosyn and related SN 93.6 5.7 0.00012 38.7 16.2 25 238-262 244-268 (993)
411 PF10313 DUF2415: Uncharacteri 93.2 0.59 1.3E-05 26.2 5.5 33 146-178 1-35 (43)
412 PF10168 Nup88: Nuclear pore c 93.1 1.5 3.3E-05 40.8 11.2 70 18-90 86-178 (717)
413 PF14761 HPS3_N: Hermansky-Pud 92.9 3.4 7.3E-05 32.2 11.1 48 158-206 29-78 (215)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 92.8 0.75 1.6E-05 39.8 8.3 76 188-263 308-403 (415)
415 PF04841 Vps16_N: Vps16, N-ter 92.7 6.4 0.00014 34.3 22.2 172 17-201 81-273 (410)
416 COG3386 Gluconolactonase [Carb 92.5 5.5 0.00012 33.1 18.4 132 64-197 113-264 (307)
417 PF11715 Nup160: Nucleoporin N 92.4 0.85 1.8E-05 41.2 8.6 38 62-99 215-256 (547)
418 PF10313 DUF2415: Uncharacteri 91.9 0.84 1.8E-05 25.5 5.0 31 62-92 1-34 (43)
419 KOG1916 Nuclear protein, conta 91.9 0.19 4.1E-06 46.7 3.7 72 19-91 183-265 (1283)
420 PRK10115 protease 2; Provision 91.8 11 0.00025 35.2 27.2 235 19-261 129-397 (686)
421 PRK13684 Ycf48-like protein; P 91.6 7.5 0.00016 32.8 16.9 149 17-175 173-330 (334)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 91.6 8.6 0.00019 33.4 21.0 53 17-70 57-117 (415)
423 KOG2377 Uncharacterized conser 91.4 8.1 0.00018 33.7 12.5 138 19-162 25-170 (657)
424 COG3204 Uncharacterized protei 91.1 7.5 0.00016 31.9 15.8 159 103-263 86-267 (316)
425 PF14583 Pectate_lyase22: Olig 90.9 9.4 0.0002 32.7 25.9 229 30-259 91-382 (386)
426 PF14781 BBS2_N: Ciliary BBSom 90.8 4.6 9.9E-05 28.9 12.0 100 161-262 13-128 (136)
427 PF08728 CRT10: CRT10; InterP 90.1 6.2 0.00014 36.6 11.5 113 63-175 102-245 (717)
428 COG3823 Glutamine cyclotransfe 90.0 5.7 0.00012 30.9 9.5 126 95-225 36-167 (262)
429 TIGR03118 PEPCTERM_chp_1 conse 89.7 10 0.00023 31.3 21.2 198 65-263 26-284 (336)
430 TIGR02604 Piru_Ver_Nterm putat 89.5 12 0.00027 31.9 16.8 141 64-206 16-202 (367)
431 PF07569 Hira: TUP1-like enhan 89.4 3.6 7.9E-05 32.3 8.6 62 69-131 18-94 (219)
432 TIGR02276 beta_rpt_yvtn 40-res 89.0 2.4 5.2E-05 23.0 6.1 38 197-234 1-40 (42)
433 TIGR03074 PQQ_membr_DH membran 88.6 22 0.00049 33.7 16.1 111 114-225 194-353 (764)
434 KOG3630 Nuclear pore complex, 88.6 3.2 6.9E-05 40.1 8.6 142 18-162 102-260 (1405)
435 PF03088 Str_synth: Strictosid 88.4 1.5 3.2E-05 29.1 4.9 42 166-207 35-76 (89)
436 KOG4460 Nuclear pore complex, 88.3 8.1 0.00017 34.3 10.3 33 105-137 168-203 (741)
437 smart00564 PQQ beta-propeller 87.4 1.4 3.1E-05 22.5 3.6 23 241-263 7-29 (33)
438 smart00036 CNH Domain found in 87.3 16 0.00034 30.4 24.2 227 26-262 8-274 (302)
439 PF10168 Nup88: Nuclear pore c 86.8 23 0.0005 33.3 13.2 38 14-51 144-181 (717)
440 KOG3616 Selective LIM binding 86.7 28 0.0006 32.7 13.5 66 63-130 16-81 (1636)
441 PF11715 Nup160: Nucleoporin N 86.6 4.9 0.00011 36.4 8.8 28 157-184 229-256 (547)
442 PRK10115 protease 2; Provision 86.5 28 0.00062 32.6 22.7 111 63-175 128-254 (686)
443 COG4590 ABC-type uncharacteriz 86.2 5.5 0.00012 34.7 8.1 161 57-220 216-390 (733)
444 PF14781 BBS2_N: Ciliary BBSom 85.7 11 0.00024 27.1 13.1 86 109-195 5-100 (136)
445 PF05694 SBP56: 56kDa selenium 85.5 24 0.00053 30.8 21.8 201 17-217 65-343 (461)
446 PF10647 Gmad1: Lipoprotein Lp 84.9 19 0.0004 29.0 17.8 142 63-206 25-184 (253)
447 PF08728 CRT10: CRT10; InterP 84.0 25 0.00053 32.9 11.7 101 157-257 113-245 (717)
448 PF01011 PQQ: PQQ enzyme repea 83.5 2.2 4.7E-05 23.0 3.2 21 243-263 3-23 (38)
449 PF07250 Glyoxal_oxid_N: Glyox 82.6 23 0.0005 28.4 11.3 139 86-225 49-206 (243)
450 TIGR02604 Piru_Ver_Nterm putat 82.1 31 0.00067 29.5 15.4 97 20-121 17-142 (367)
451 COG5167 VID27 Protein involved 81.9 38 0.00082 30.3 13.2 142 71-216 477-632 (776)
452 KOG2247 WD40 repeat-containing 80.7 0.19 4.1E-06 43.6 -2.6 136 66-205 39-177 (615)
453 PF12768 Rax2: Cortical protei 80.4 31 0.00067 28.3 13.1 90 41-131 16-122 (281)
454 PRK14131 N-acetylneuraminic ac 80.1 37 0.00081 29.1 18.8 23 239-261 343-371 (376)
455 KOG3522 Predicted guanine nucl 79.4 10 0.00022 35.6 7.6 141 33-182 549-703 (925)
456 COG1520 FOG: WD40-like repeat 79.3 39 0.00084 28.8 21.6 191 33-226 70-278 (370)
457 KOG4460 Nuclear pore complex, 79.1 36 0.00078 30.5 10.4 25 64-88 106-130 (741)
458 KOG3630 Nuclear pore complex, 78.5 5.9 0.00013 38.4 6.0 96 20-119 159-260 (1405)
459 PLN00033 photosystem II stabil 78.5 44 0.00096 29.0 20.9 144 65-213 242-396 (398)
460 PRK13684 Ycf48-like protein; P 78.4 40 0.00086 28.4 20.8 148 61-214 172-329 (334)
461 TIGR03547 muta_rot_YjhT mutatr 77.7 41 0.0009 28.3 19.2 12 239-250 321-332 (346)
462 KOG1900 Nuclear pore complex, 76.8 52 0.0011 32.8 11.6 136 38-177 96-273 (1311)
463 PF12657 TFIIIC_delta: Transcr 76.4 30 0.00065 26.0 9.1 33 146-178 86-123 (173)
464 PF05935 Arylsulfotrans: Aryls 75.9 58 0.0013 29.0 16.9 117 67-186 153-311 (477)
465 TIGR03548 mutarot_permut cycli 75.2 47 0.001 27.6 13.9 64 72-135 123-197 (323)
466 PF07995 GSDH: Glucose / Sorbo 74.9 50 0.0011 27.8 12.0 99 19-122 4-133 (331)
467 KOG3522 Predicted guanine nucl 73.2 34 0.00073 32.4 9.1 141 75-225 549-706 (925)
468 COG4590 ABC-type uncharacteriz 72.8 56 0.0012 28.8 9.8 104 30-134 279-388 (733)
469 PF03088 Str_synth: Strictosid 72.3 20 0.00043 23.7 5.8 43 78-120 32-74 (89)
470 PF10647 Gmad1: Lipoprotein Lp 72.0 50 0.0011 26.5 22.2 146 18-168 25-188 (253)
471 PF14727 PHTB1_N: PTHB1 N-term 70.8 73 0.0016 27.9 27.1 143 30-175 36-203 (418)
472 PF13570 PQQ_3: PQQ-like domai 66.7 16 0.00034 19.7 3.8 19 198-216 21-39 (40)
473 PLN00033 photosystem II stabil 65.9 91 0.002 27.1 15.4 106 61-173 280-396 (398)
474 TIGR03032 conserved hypothetic 63.5 89 0.0019 26.2 10.3 98 128-233 189-307 (335)
475 PF07995 GSDH: Glucose / Sorbo 63.3 65 0.0014 27.1 8.6 80 6-85 242-329 (331)
476 TIGR02171 Fb_sc_TIGR02171 Fibr 63.2 1.2E+02 0.0026 29.3 10.8 80 83-162 329-415 (912)
477 COG1520 FOG: WD40-like repeat 61.9 1E+02 0.0022 26.3 23.7 189 71-263 67-273 (370)
478 KOG3616 Selective LIM binding 61.7 31 0.00066 32.4 6.5 32 101-132 13-44 (1636)
479 PF01436 NHL: NHL repeat; Int 61.4 19 0.00041 17.7 4.0 23 65-87 5-27 (28)
480 KOG2280 Vacuolar assembly/sort 60.9 1.5E+02 0.0033 28.0 18.4 54 38-93 61-114 (829)
481 PF07676 PD40: WD40-like Beta 59.9 25 0.00053 18.6 5.8 30 144-173 7-38 (39)
482 KOG2109 WD40 repeat protein [G 59.7 11 0.00025 34.3 3.5 83 43-125 297-391 (788)
483 COG3823 Glutamine cyclotransfe 59.2 87 0.0019 24.7 14.8 176 21-205 50-247 (262)
484 TIGR03547 muta_rot_YjhT mutatr 56.9 1.2E+02 0.0026 25.5 15.9 26 30-55 63-99 (346)
485 PF03022 MRJP: Major royal jel 56.5 1.1E+02 0.0024 25.1 10.6 73 190-262 3-100 (287)
486 KOG2247 WD40 repeat-containing 55.2 1.8 3.9E-05 37.9 -2.0 145 22-174 40-186 (615)
487 KOG2280 Vacuolar assembly/sort 55.0 1.9E+02 0.0042 27.4 13.6 173 18-199 85-271 (829)
488 KOG1916 Nuclear protein, conta 53.0 19 0.0004 34.4 3.8 163 13-181 129-328 (1283)
489 TIGR03548 mutarot_permut cycli 52.4 1.4E+02 0.0029 24.9 19.4 23 113-135 123-150 (323)
490 TIGR03118 PEPCTERM_chp_1 conse 52.2 1.4E+02 0.003 25.0 14.5 169 17-186 77-289 (336)
491 PRK14131 N-acetylneuraminic ac 52.2 1.5E+02 0.0033 25.3 15.0 12 169-180 190-201 (376)
492 KOG1900 Nuclear pore complex, 51.5 2.8E+02 0.006 28.2 13.1 134 121-259 96-273 (1311)
493 PLN02193 nitrile-specifier pro 49.8 1.9E+02 0.0041 25.7 19.2 53 208-260 343-412 (470)
494 KOG3611 Semaphorins [Signal tr 48.2 2.2E+02 0.0047 27.2 9.9 87 1-87 389-489 (737)
495 COG5290 IkappaB kinase complex 47.4 1.8E+02 0.0039 27.9 8.9 102 107-212 251-362 (1243)
496 PF10214 Rrn6: RNA polymerase 46.2 2.8E+02 0.006 26.6 18.8 193 24-218 1-234 (765)
497 PF12768 Rax2: Cortical protei 46.1 1.7E+02 0.0036 24.1 10.8 91 84-177 17-124 (281)
498 PF14779 BBS1: Ciliary BBSome 46.0 1.2E+02 0.0026 24.6 7.0 58 155-212 192-254 (257)
499 PLN02153 epithiospecifier prot 45.6 1.8E+02 0.0039 24.4 18.2 22 239-260 251-286 (341)
500 PF12657 TFIIIC_delta: Transcr 45.5 60 0.0013 24.3 5.1 32 18-49 87-121 (173)
No 1
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=316.09 Aligned_cols=259 Identities=68% Similarity=1.139 Sum_probs=248.8
Q ss_pred ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF 83 (264)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~ 83 (264)
.+...|++|+||++||..|+|+|++|+|-+|++++.|+...+.+.++|.++.+|+||++.|++.+...+-...+|++.|-
T Consensus 2 ~~~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 2 AMRQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred CcccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence 57788999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (264)
+.|+||..+|..+..++|++.|..++|+.+.++|++|+.++.+|+||++.++.+..++..|.+.|..+.|+..+..+|.+
T Consensus 82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999988877765
Q ss_pred eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEE
Q 024676 164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (264)
Q Consensus 164 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (264)
.+|++||+||.++++.++.++.+.+|+++.++++|++++.+.++.|.+||..+++.++.|.++++..++++.|+ ...|
T Consensus 162 -add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~-k~~f 239 (334)
T KOG0278|consen 162 -ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK-KEFF 239 (334)
T ss_pred -ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC-CceE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999996 6899
Q ss_pred EEecCCCeEEEEEcCcceeeC
Q 024676 244 IAGGEDMWVHVFDFHTGEQIG 264 (264)
Q Consensus 244 ~~gs~d~~v~vwd~~~g~~i~ 264 (264)
++|++|.+++.||..||++|+
T Consensus 240 VaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred EecCcceEEEEEeccCCceee
Confidence 999999999999999999985
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=284.91 Aligned_cols=246 Identities=22% Similarity=0.301 Sum_probs=214.9
Q ss_pred ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (264)
Q Consensus 7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~ 86 (264)
....++.||+..|.++.|+|.. ++..||||+.||++++|+.++-+.+++|.||...|..++|+|+|++|+|+|.|.+.|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR 286 (459)
T ss_pred ceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence 3445678999999999999964 466889999999999999998899999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 87 iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
+||+.++..+... .|...|.+++|+|+|.+++||+.|..-++||++++..+.. +..|..+|..++|+|+ ++.+++|+
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~-L~gH~k~I~~V~fsPN-Gy~lATgs 364 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF-LAGHIKEILSVAFSPN-GYHLATGS 364 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE-ecccccceeeEeECCC-ceEEeecC
Confidence 9999998654433 4889999999999999999999999999999999886544 4458899999999985 56788899
Q ss_pred CCCeEEEEECCCCceeEEecCC-CCEEEEEEcC-CCcEEEEe-CCCcEEEEECCCceeeeEEecCCCC-ceeeEcCCCCC
Q 024676 166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGN 241 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 241 (264)
.|+++||||+|..+++.++..+ +.|..+.|+| .|.||+++ -|++++||..+++.+++.+..+... .+....+ +++
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~ 443 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQ 443 (459)
T ss_pred CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCc
Confidence 9999999999999999988765 4589999999 56787765 4999999999999999999887654 4555555 699
Q ss_pred EEEEecCCCeEEEEE
Q 024676 242 IFIAGGEDMWVHVFD 256 (264)
Q Consensus 242 ~~~~gs~d~~v~vwd 256 (264)
+++++|-|+++++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999995
No 3
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-41 Score=259.03 Aligned_cols=251 Identities=27% Similarity=0.366 Sum_probs=215.0
Q ss_pred CcceeecceE-eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676 2 DKRKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (264)
Q Consensus 2 ~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s 80 (264)
||-++.+|.. +.||++.|..+..++ ||++.+++|.|+++|+||+.+++..+.|.||...|.+++|++|...++|||
T Consensus 48 dd~~~G~~~r~~~GHsH~v~dv~~s~---dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS 124 (315)
T KOG0279|consen 48 DDIKYGVPVRRLTGHSHFVSDVVLSS---DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS 124 (315)
T ss_pred CccccCceeeeeeccceEecceEEcc---CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC
Confidence 4555666654 469999999998885 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcEEEEeec--CCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676 81 ADFTAKLWDALTGDEKHSFEH--KHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (264)
Q Consensus 81 ~D~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 156 (264)
+|+++++||+.........++ .+-|.+++|+|+ +.+++++++|+++|+||++.-+..... ..|++.++.++.+|+
T Consensus 125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPD 203 (315)
T ss_pred CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-ccccccEEEEEECCC
Confidence 999999999887654444443 567999999997 799999999999999999876654444 457889999998875
Q ss_pred CCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC---------
Q 024676 157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--------- 227 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~--------- 227 (264)
+.++++++.||++-+||++.++.++.+.+...|++++|+|+...|+.+.+..|+|||+....++..+...
T Consensus 204 -GslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 204 -GSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred -CCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccC
Confidence 5688889999999999999999999999999999999999988888888888999999998887766531
Q ss_pred -CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 228 -CNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
..+.+.++++ +|..|.+|=.|+.|++|.+.
T Consensus 283 ~~~clslaws~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 283 DPICLSLAWSA-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CcEEEEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence 1223556666 58899999999999999875
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=279.16 Aligned_cols=246 Identities=22% Similarity=0.295 Sum_probs=215.6
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC--CcEEEEecCCCeEEEEeC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDA 90 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~iwd~ 90 (264)
.|-++||..+.|++ |+++|||||.+|.+++|+..+...+.+|.||.+.|.++.|+|. +..+|||+.||++|+|++
T Consensus 172 ~gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 48899999999995 8999999999999999999999999999999999999999997 568999999999999999
Q ss_pred CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
.+..++..++ |...|..++|+|+|++|+|++.|.+.++||+++......+- +|...+.+++|.+ ++.++++|+-|..
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~-DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQP-DGSLAATGGLDSL 326 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecC-CCceeeccCccch
Confidence 9988777775 77889999999999999999999999999999876655554 4667899999876 4568888899999
Q ss_pred EEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCce-eeEcCCCCCEEEEe
Q 024676 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTES-ASLEPKLGNIFIAG 246 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g 246 (264)
=+|||+|+|+++-.+.. ..+|.++.|+|||..++++ .|++++|||++....+.++..+.+..+ ..+.|..|.+|+|+
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 99999999999887865 4679999999999888764 589999999999988777776666544 56666679999999
Q ss_pred cCCCeEEEEEcCcceee
Q 024676 247 GEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 247 s~d~~v~vwd~~~g~~i 263 (264)
|.|+++++|...+++++
T Consensus 407 syD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccCcceeeecCCCcccc
Confidence 99999999998877654
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-42 Score=272.48 Aligned_cols=242 Identities=26% Similarity=0.420 Sum_probs=204.5
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
.||.++|.++.|+| +|.+||+||.|.++|+||..+.....+.+||+..|.+++|+||++.+|||+.||+|++||..+
T Consensus 112 ~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred CCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 69999999999997 899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcEEEE-e-ecCCeEEEEEECC-----CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 93 GDEKHS-F-EHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 93 ~~~~~~-~-~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
++++-. + .|.+.|++++|.| ..++|++++.|+.++|||+..+.. ...+..|+.+++|+.|- ++.++.+++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwG--G~gliySgS 265 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWG--GEGLIYSGS 265 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEc--CCceEEecC
Confidence 875433 3 4899999999977 458899999999999999976543 34556789999999995 455888999
Q ss_pred CCCeEEEEECCCCceeEEecC-----------------------------------------------------------
Q 024676 166 DSGGVRLWDARSGKIVQTLET----------------------------------------------------------- 186 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~~----------------------------------------------------------- 186 (264)
.|++||+|+...|++.+.+..
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999999998755332211110
Q ss_pred ---------------------CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEE
Q 024676 187 ---------------------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF 243 (264)
Q Consensus 187 ---------------------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (264)
...|+.+.||||++++++++ |..|++||.++++-+.+|..+.. ...+++.. +.++|
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLl 424 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLL 424 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEE
Confidence 12478899999999998765 99999999999999988886544 34566766 58999
Q ss_pred EEecCCCeEEEEEcCcce
Q 024676 244 IAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 244 ~~gs~d~~v~vwd~~~g~ 261 (264)
++||.|.++++||+++.+
T Consensus 425 VS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred EEcCCCceEEEEEeeeee
Confidence 999999999999998654
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-40 Score=250.84 Aligned_cols=248 Identities=21% Similarity=0.313 Sum_probs=212.3
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-----CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-----~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
++.||++.|.+++-.+. +-+.|+++++|.++.+|++.. |..++.|.||+..|..+..++|+.+++|+|.|+++
T Consensus 10 tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 46799999999998875 346899999999999998754 55688999999999999999999999999999999
Q ss_pred EEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-CCCeEEEEEecCC-CeEEE
Q 024676 86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGSIRTVAWLHSD-QTILS 162 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~~~~~ 162 (264)
|+||+.+++..+.+. |..-|.+++++|+++.+++|+.|++|++|+.... ......... ...|.|+.|.|.. ..+++
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999998777765 8999999999999999999999999999998543 333333332 7789999999875 56788
Q ss_pred EeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCC
Q 024676 163 SCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240 (264)
Q Consensus 163 ~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (264)
+++.|++||+||+++.+....+.. ...++.+++||||.+++++ .|+.+.+||++.++.+..+.......+++|.| .
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp--n 244 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP--N 244 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC--C
Confidence 889999999999999988777654 4569999999999998775 48999999999999988887777778888888 5
Q ss_pred CEEEEecCCCeEEEEEcCcceee
Q 024676 241 NIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 241 ~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
++.+++..+..|+|||+.++..+
T Consensus 245 rywL~~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 245 RYWLCAATATSIKIWDLESKAVV 267 (315)
T ss_pred ceeEeeccCCceEEEeccchhhh
Confidence 77788888888999999887654
No 7
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=238.36 Aligned_cols=246 Identities=23% Similarity=0.360 Sum_probs=211.1
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
.++..|.++|.+++|+ -||+|.++++.|+++++|++..|.++++++||...|..++.+.|+..+++|+.|+.|.+||
T Consensus 11 ~~l~~~qgaV~avryN---~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYN---VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eeecccccceEEEEEc---cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 3457899999999999 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC-eEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
+++|+..+.+. |...|+.+.|+.+...+++|+.|..+++||-++....+ +.+......+.++... ++.+++++-|
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccC
Confidence 99999999986 88899999999999999999999999999988765443 3444556778777754 4578888999
Q ss_pred CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCC---ceeeEcCCCCCEE
Q 024676 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNT---ESASLEPKLGNIF 243 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 243 (264)
|++|.||+|.|+....+-. .||+++.++++++.. +++-++++++.|-.+++.++.|..+.+. ...++.. ....+
T Consensus 165 GtvRtydiR~G~l~sDy~g-~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV 242 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG-HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHV 242 (307)
T ss_pred CcEEEEEeecceeehhhcC-CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeE
Confidence 9999999999987655444 599999999999875 5566899999999999999888765443 2334443 36789
Q ss_pred EEecCCCeEEEEEcCcceee
Q 024676 244 IAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 244 ~~gs~d~~v~vwd~~~g~~i 263 (264)
++||+||.|++||+..+.++
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred EeccCCceEEEEEeccceee
Confidence 99999999999999877654
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=245.53 Aligned_cols=242 Identities=24% Similarity=0.389 Sum_probs=204.9
Q ss_pred eeccCCCeeeeEeccC--CCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 12 CHGHSRPVVDLFYSPI--TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~--~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
+.||+..|.+|+|.|. .|.+++||++|.||+++|||...++.+..+.||+.+|.|++|..++ +++|||.|++||+|+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWR 274 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEE
Confidence 4799999999999994 4778899999999999999999999999999999999999998766 679999999999999
Q ss_pred CCCCcEEEEee-cCCeEEEEEEC-----------CCC-------------------------CEEEEeeCCCcEEEeeCC
Q 024676 90 ALTGDEKHSFE-HKHIVRACAFS-----------EDT-------------------------HLLLTGGFEKILRIFDLN 132 (264)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~-----------~~~-------------------------~~l~s~~~d~~i~~~d~~ 132 (264)
...|...+.+. |.+-|+.++.+ |.+ ..|++|+.|.++.+|+-.
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 99988777664 77777777665 333 349999999999999976
Q ss_pred CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeC-CCcE
Q 024676 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSV 210 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~~~i 210 (264)
....+......|+..++.+.|+|++. ++++++-|..||+||-++|+.+.++.. -.+|+.++|+.|.+++++++ |.++
T Consensus 355 ~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 355 KSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred ccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence 55544555567888999999998655 677888889999999999999999974 46799999999999987754 8999
Q ss_pred EEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 211 KFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 211 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
++||+++.+....+..+. ......+.| +|..+++|+.|+.+++|.
T Consensus 434 Kvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 999999988766665433 344667777 588999999999999995
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-37 Score=241.85 Aligned_cols=242 Identities=23% Similarity=0.347 Sum_probs=212.2
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
++||++.|..|+|+. .|++||++|.|-.+.+||..+ .+.++.+.||+..|.+++|-|.+.+++|+++|.+||+|++
T Consensus 146 LrGHt~sv~di~~~a---~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~ 222 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDA---SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC 222 (406)
T ss_pred hhccccceeEEEEec---CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence 479999999999995 899999999999999999876 4667788999999999999999999999999999999999
Q ss_pred CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC-------------
Q 024676 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS------------- 156 (264)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~------------- 156 (264)
.++.++.++. |..-|..+..+.++.++++|+.|.++++|-+.+.+.... ...|+.++.+++|-|.
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-LREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-hhccccceEEEEecccccCcchhhccCCC
Confidence 9999998885 777899999999999999999999999999987654433 3356778888888763
Q ss_pred -CCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCcee
Q 024676 157 -DQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESA 233 (264)
Q Consensus 157 -~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (264)
+..++.+++.|++||+||+.++.++.++.. .+.|..++|+|.|+||++ ++|+++++||+++..+.++...+.+....
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 235888999999999999999999998865 467999999999999865 67899999999999999999988777665
Q ss_pred eEcCCCCCEEEEecCCCeEEEEEc
Q 024676 234 SLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
..+++...++++||-|-++++|.-
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCCCCceEEeccccceeeeeec
Confidence 555556779999999999999963
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-35 Score=227.64 Aligned_cols=252 Identities=22% Similarity=0.358 Sum_probs=214.5
Q ss_pred eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
+-..++++||...|.++.|++ |.++|+++|.||.++|||.-+...+.-+......|..++|+|.+.++|+|+-|..+
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 334478899999999999996 99999999999999999998887777787788999999999999999999999999
Q ss_pred EEEeCCCC--c----EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676 86 KLWDALTG--D----EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 86 ~iwd~~~~--~----~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (264)
-||++.+. + ..+.+ .|...+.++.|-+++ .|+|++.|.++-+||++++... +.+..|.+.|.++++.|.+.
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEE-EEecCCcccEEEEecCCCCC
Confidence 99999865 2 22223 388899999998855 5789999999999999988653 55567899999999998777
Q ss_pred eEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEec---CCCCcee
Q 024676 159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM---PCNTESA 233 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~ 233 (264)
..+++|+-|+..+|||+|.+.+++.+..+ ..|+++.|.|+|.-+++ ++|++.|+||+|....+..|.. .+...+.
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 77888888899999999999999999754 56999999999976655 5679999999999888877754 4556677
Q ss_pred eEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
.|+. .|++|.+|..|..+.+||.-.||.+
T Consensus 280 ~FS~-SGRlLfagy~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 280 AFSK-SGRLLFAGYDDFTCNVWDTLKGERV 308 (343)
T ss_pred EEcc-cccEEEeeecCCceeEeeccccceE
Confidence 7765 6999999999999999998877765
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.5e-36 Score=257.86 Aligned_cols=244 Identities=25% Similarity=0.367 Sum_probs=207.2
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-------------------------------ceEEeee
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------------------------------DWIGTFE 58 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-------------------------------~~~~~~~ 58 (264)
+.+++--..+.|..|++ |+.+||.|-.|..|++|.+... ...+++-
T Consensus 372 YT~~nt~~~v~ca~fSd---dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSD---DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEcCCcceeEeecC---CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 34466667888999986 8889999999999999987620 1134577
Q ss_pred CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676 59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (264)
Q Consensus 59 ~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (264)
||+++|+.+.|+|+.++|+++|.|++||+|.+.+..++..++ |..||..+.|+|-|.+++|++.|++.++|...... +
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-P 527 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-P 527 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-c
Confidence 999999999999999999999999999999999988777775 88899999999999999999999999999987543 3
Q ss_pred CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeC-CCcEEEEEC
Q 024676 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDA 215 (264)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~ 215 (264)
.+.+-.|.+.+.|+.|.| +..++++|+.|.+||+||..+|..++.+.+ ..+|.++++||+|++|++++ ++.|++||+
T Consensus 528 lRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 345556788899998765 567888999999999999999999998865 57899999999999998765 799999999
Q ss_pred CCceeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 216 NHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 216 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
.+++.+..+..+.. ..++.|+. +|..||+||.|.+|++||+..
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 99998887766543 45666765 699999999999999999863
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-36 Score=259.59 Aligned_cols=212 Identities=27% Similarity=0.485 Sum_probs=188.2
Q ss_pred CCcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (264)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s 80 (264)
+|+.+-..-..+-||++||..+.|+| +.++|+++|.|+++|+|++.+...+-.++||..||+.+.|+|.|.++||+|
T Consensus 436 ~D~~~~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 436 LDDDSSGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred ccccCCceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence 46666666677889999999999996 899999999999999999999998889999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676 81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 81 ~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
.|++.++|......+++.+. |-..|.++.|||++.++++||.|+++|+||+.++.. .+.+.+|+++|.+++++|.+ .
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~G-r 590 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCG-R 590 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCC-c
Confidence 99999999988877777664 788899999999999999999999999999987754 45666799999999999855 5
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCC
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH 217 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~ 217 (264)
++++++.|+.|+|||+.+++.+..+.. .+.+.++.||++|..|+++ .|.+|++||+.+
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 688889999999999999998877754 4569999999999988765 588999999864
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.2e-35 Score=220.40 Aligned_cols=241 Identities=19% Similarity=0.331 Sum_probs=192.5
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 95 (264)
-|++|... ||+++||+|+.- .||+||++++. .+.+|++|+..|.+|.|..+|+.++|||.||++||||+++..+
T Consensus 42 qVNrLeiT---pdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 42 QVNRLEIT---PDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred ceeeEEEc---CCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence 46667555 588898887754 68999999875 6899999999999999999999999999999999999999888
Q ss_pred EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
.+.+++..+|+.+..+|+..-|++|..++.|++||+.......+......-.+.++...+++ ..++++...|...+|++
T Consensus 118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRL 196 (311)
T ss_pred chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEc
Confidence 99999999999999999999999999999999999986544444444445567777766655 45666677799999999
Q ss_pred CCCc------eeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676 176 RSGK------IVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAG 246 (264)
Q Consensus 176 ~~~~------~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (264)
-+.+ ++..++.+ .-+..+.+|||+++|++ +.|.+++||+..++ ..-...+.+..-.--+.++.+++|+++|
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence 7644 23344433 45888999999999876 56899999999988 3333333343333333344469999999
Q ss_pred cCCCeEEEEEcCcceee
Q 024676 247 GEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 247 s~d~~v~vwd~~~g~~i 263 (264)
|.|.++|+|++..|+++
T Consensus 277 ssd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEV 293 (311)
T ss_pred CCCCceeecccccCcee
Confidence 99999999999999976
No 14
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-35 Score=221.29 Aligned_cols=238 Identities=29% Similarity=0.562 Sum_probs=203.9
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
+|+.+.||.+|+..|+|+ .+|.+|.+++.|.++.+|-...|+.+.++.||++.|+++..+.+.++++|||.|.++++
T Consensus 2 rpi~l~GHERplTqiKyN---~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 2 RPILLQGHERPLTQIKYN---REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred CccccccCccccceEEec---CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 578889999999999999 49999999999999999999899999999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-----CCcEEEeeCCCCC------CCCeEeccCCCCeEEEEEecC
Q 024676 88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-----EKILRIFDLNRPD------APPREVGNSSGSIRTVAWLHS 156 (264)
Q Consensus 88 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~ 156 (264)
||+.+|+++..++...+|..+.|++.+++++.+.. .+.|.++|++... .+...+..+...+..+-|.|.
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 99999999999999999999999999998887654 3558899987322 223344456678888999988
Q ss_pred CCeEEEEeeCCCeEEEEECCCCceeE-Ee-cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCcee
Q 024676 157 DQTILSSCTDSGGVRLWDARSGKIVQ-TL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESA 233 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (264)
++. +++|.+||.|.+||+++|+.+. .- .+...|+.++++||..++++ +.|.+-++||.++.+++++|...++.+++
T Consensus 159 ~~~-ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a 237 (327)
T KOG0643|consen 159 GET-IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA 237 (327)
T ss_pred CCE-EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence 776 4567788999999999987653 32 35567999999999987655 55899999999999999999988888889
Q ss_pred eEcCCCCCEEEEecCC
Q 024676 234 SLEPKLGNIFIAGGED 249 (264)
Q Consensus 234 ~~~~~~~~~~~~gs~d 249 (264)
+++|.....+..||++
T Consensus 238 aisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQE 253 (327)
T ss_pred ecccccceEEecCCce
Confidence 9998766666666665
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.1e-35 Score=236.72 Aligned_cols=237 Identities=28% Similarity=0.461 Sum_probs=204.0
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 95 (264)
...|++|+|+. +|..||+|+.||.+|+|+.. |.++.+|..|+++|.++.|+.+|.++++++.|+++.|||..++..
T Consensus 235 nkdVT~L~Wn~---~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNN---DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecC---CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 35799999994 99999999999999999975 677889999999999999999999999999999999999876654
Q ss_pred EEEe------------------------------------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC
Q 024676 96 KHSF------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133 (264)
Q Consensus 96 ~~~~------------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~ 133 (264)
.+.+ .|..+|.++.|+|.+.+|++|+.|+++++|+...
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 3221 1667899999999999999999999999999754
Q ss_pred CCCCCeEeccCCCCeEEEEEecCC--------CeEEEEeeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEEE
Q 024676 134 PDAPPREVGNSSGSIRTVAWLHSD--------QTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITT 204 (264)
Q Consensus 134 ~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~ 204 (264)
... ...+..|..+|..+.|+|.+ ...+++++.|++|++||+..+.+++.+ .+..||.+++|+|+|+++++
T Consensus 391 ~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 391 SNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred Ccc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 433 33444577788888888754 346778888899999999999999998 67789999999999999988
Q ss_pred eC-CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 205 AD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 205 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
++ |+.|.||+.++++.++.+...+.+...+|... |..+..+-.|+.+++-|+.
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~-G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAA-GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCeeEeccccchheeEeecCCCeEEEEEEcCC-CCEEEEEecCCCceEEEec
Confidence 76 89999999999999999998888778888875 6888888889999998874
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=251.29 Aligned_cols=244 Identities=28% Similarity=0.432 Sum_probs=203.3
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC-
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL- 91 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~- 91 (264)
|...|.++.|+| +|++|++++.|+.+++|+...++ +.+.+.+|...|+.++|+|+++++++++.|+++||||+.
T Consensus 158 ~~~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 478999999996 99999999999999999997777 777889999999999999999999999999999999994
Q ss_pred CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
.+..+.++ .|...|++++|+|+++++++|+.|++|++||+++++.. ..+..|.+.+.++++.+++. ++++++.|+.|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~-~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i 312 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV-RKLKGHSDGISGLAFSPDGN-LLVSASYDGTI 312 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE-EeeeccCCceEEEEECCCCC-EEEEcCCCccE
Confidence 44666666 59999999999999999999999999999999986643 45556788999999877655 55566778999
Q ss_pred EEEECCCCc--eeEEecC--CC-CEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCc-ee--eEcCCCCC
Q 024676 171 RLWDARSGK--IVQTLET--KS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE-SA--SLEPKLGN 241 (264)
Q Consensus 171 ~iwd~~~~~--~~~~~~~--~~-~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~-~~--~~~~~~~~ 241 (264)
+|||+.+++ ++..+.. .. ++.++.|+|+++++.++ .|+.+++||++....+..+..+.... ++ ......+.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 999999999 4555532 22 68999999999998765 57799999999998888887654421 11 11233689
Q ss_pred EEEEecCCCeEEEEEcCcceee
Q 024676 242 IFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 242 ~~~~gs~d~~v~vwd~~~g~~i 263 (264)
++++|+.|+.|++||..+++++
T Consensus 393 ~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred eEEEEeCCceEEEEeCCccchh
Confidence 9999999999999999887654
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-35 Score=247.36 Aligned_cols=248 Identities=22% Similarity=0.276 Sum_probs=219.2
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
+..|+..|.+|.|+|+.| +++++-..|.+.||+.++..+++.|+--.-||++..|-+....+++||+|..||+++.+
T Consensus 9 ~~~rSdRVKsVd~HPteP---w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEP---WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhccCCceeeeecCCCCc---eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 345999999999999877 99999999999999999999999998778899999999999999999999999999999
Q ss_pred CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
+++.+..++ |.+.+++++.||...+++|+|.|.+||+||.+..-...+.+..|...+-+++++|.+..-+++++-|++|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 999999886 8999999999999999999999999999999866544566677888999999999999999999999999
Q ss_pred EEEECCCCceeEEecCC-CCEEEEEEcCCC---cEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676 171 RLWDARSGKIVQTLETK-SPVTSAEVSRDG---RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG 246 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~---~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (264)
|+|.+.+..+..+++.+ ..|+++.+=+.| .++++++|.++++||..+..|++++..+.+..+..++.+.=.++++|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 99999998888888765 459999998877 45566778999999999999999998877666555444446799999
Q ss_pred cCCCeEEEEEcCccee
Q 024676 247 GEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 247 s~d~~v~vwd~~~g~~ 262 (264)
|+||++|+|+..|.+.
T Consensus 246 sEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKL 261 (794)
T ss_pred cCCccEEEecCcceeh
Confidence 9999999999877653
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.8e-36 Score=245.07 Aligned_cols=241 Identities=24% Similarity=0.386 Sum_probs=206.2
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
+.||+..|.++.|.|. .+.+|++++.|+.|.+|++.. +.++++|.||..+|+.++|++++..+.|+|.|+++|+||+
T Consensus 210 ~~gH~kgvsai~~fp~--~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPK--KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred ccCCccccchhhhccc--eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 3799999999999984 578999999999999999876 7899999999999999999999999999999999999999
Q ss_pred CCCcEEEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 91 LTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
++|.++..+.....++++.++|++ +.+++|+.|+.|+.||+++++. .++...|-+.+..+.|.+.+..+ ++.++|+.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~rF-issSDdks 365 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRRF-ISSSDDKS 365 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCceE-eeeccCcc
Confidence 999999999988999999999988 8999999999999999998874 35556778899999999877654 45678899
Q ss_pred EEEEECCCCceeEEec--------------------------------C--------------C---CCEEEEEEcCCCc
Q 024676 170 VRLWDARSGKIVQTLE--------------------------------T--------------K---SPVTSAEVSRDGR 200 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~--------------------------------~--------------~---~~v~~~~~s~~~~ 200 (264)
++||+.+..-.+..+. . + ..-..+.|||||.
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 9999987543221110 0 0 1235678999999
Q ss_pred EEEEeC-CCcEEEEECCCceeeeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 201 YITTAD-GSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 201 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
+|++++ +|.+.+||-++-+.+..++.+ ..+....++|-....+||+|-||.|++||
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 998876 689999999998888888876 44566788888888999999999999996
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=223.81 Aligned_cols=244 Identities=23% Similarity=0.359 Sum_probs=198.7
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
-.+.||+++|+.+.|+| +|.+||+|+.|..|.+|++.. -+....++||+++|..+.|..|+..++|+|.|++++.|
T Consensus 41 m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 34579999999999997 899999999999999999653 34566788999999999999999999999999999999
Q ss_pred eCCCCcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676 89 DALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (264)
Q Consensus 89 d~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (264)
|+++|+..+..+ |...|+.+.-.. ...++.+++.|+++|+||+++.+..... ..+-.++++.|...... +.++.-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~q-v~sggI 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQ-VISGGI 194 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEecccccc-eeeccc
Confidence 999999887765 788888887433 3466778899999999999865543222 23456788888865554 555667
Q ss_pred CCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc----eeeeEEecC-----CCCceeeE
Q 024676 167 SGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF----GLVKGYNMP-----CNTESASL 235 (264)
Q Consensus 167 d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~----~~~~~~~~~-----~~~~~~~~ 235 (264)
|+.|++||++.+..++.+.++ .+|..+..+|+|.++.+ +-|.++++||++-+ .+++.|..+ .+....++
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 799999999999999988765 57999999999998766 45899999999854 457666543 23446677
Q ss_pred cCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 236 EPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 236 ~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
.|+ ++.+.+|+.|+.+++||...-
T Consensus 275 sp~-~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 275 SPN-GTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred cCC-CCccccccccceEEEeecccc
Confidence 875 888999999999999998653
No 20
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-35 Score=252.44 Aligned_cols=237 Identities=21% Similarity=0.340 Sum_probs=196.1
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC------------------------------------C------
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------------------------------G------ 51 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~------------------------------------~------ 51 (264)
+|++.|+++.|++ ||+|||+|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 7999999999996 999999999999999996532 0
Q ss_pred ------------------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECC-
Q 024676 52 ------------------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE- 112 (264)
Q Consensus 52 ------------------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~- 112 (264)
+++..|.||.+.|..+.|+.++ +|+|+|.|+|||+|++....++..|.|.+.|++++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 0123568999999999999654 78899999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC------
Q 024676 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------ 186 (264)
Q Consensus 113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------ 186 (264)
+++++++|+.|+++|+|++...+. ........-|++++|.|+|+..++ |+.+|.+++|+.+..+.+..+..
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPDGKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCcCee--EeehhhhhhheeEEeccCCceEEE-EEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 889999999999999999864332 233344578999999998776555 56669999999998776543321
Q ss_pred ---CCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 187 ---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 187 ---~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+..|+.+++.|.. ++|+++.|..|||+|++...++..|+.. .....+.|.. +|+++++||+|..||+|+..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 2369999999865 4888999999999999888887777643 3345677887 69999999999999999963
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=236.19 Aligned_cols=249 Identities=21% Similarity=0.302 Sum_probs=208.9
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~ 86 (264)
.++..|+.+|+.+.|+| +|+|||++|.|.++.||.+... +...++.||..+|..+.|+||..++++++.|..++
T Consensus 218 qil~~htdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhHhhCCCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 34578999999999996 9999999999999999976543 35788999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEeecC--CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 87 LWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 87 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
+||+.+|.....+++. ..+.+++|.|++..+++|+.|+.|..||++.... ..-.+.....+..++..+++.++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999998888866 6789999999999999999999999999975432 122222335688999999888888776
Q ss_pred eCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC---CceeeEcCCCC
Q 024676 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLG 240 (264)
Q Consensus 165 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~ 240 (264)
. |..|++++.++......+..+.++.++..|.|++++.. -.+..+++||++....++.|..+.. ....+|..-..
T Consensus 374 ~-d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 V-DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred c-ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 5 58999999998877767777889999999999998655 5678999999998888888865432 23445554445
Q ss_pred CEEEEecCCCeEEEEEcCcceee
Q 024676 241 NIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 241 ~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
.++++||+|+.||||+..+|+.+
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred ceEEecCCCceEEEEEccCCcee
Confidence 78999999999999999999876
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=228.38 Aligned_cols=244 Identities=20% Similarity=0.326 Sum_probs=208.9
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
+..||.+=|.+|++.| ...++++||+|+++.|||+.+|++..++.||...|+.+++++...|+.+++.|+.||-||+
T Consensus 146 Vi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 3479999999999997 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 91 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
+..+.++.| .|-+.|.++..+|....|++|+.|.++|+||+++... ...+..|...+..+.+.+-++. +++|+.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpq-vit~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQ-VITGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCc-eEEecCCce
Confidence 999887766 4788999999999999999999999999999987543 3455668889999888776665 557788899
Q ss_pred EEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEec
Q 024676 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGG 247 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs 247 (264)
|++||++.|+.+..+.+ +..+.+++.+|....++++....|+-|++..++.+..+..+.. .++... +...++++|+
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~--nsD~v~~~G~ 378 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSV--NSDGVLVSGG 378 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeee--ccCceEEEcC
Confidence 99999999998777754 4569999999998888888777999999999887766544332 223333 3467899999
Q ss_pred CCCeEEEEEcCcce
Q 024676 248 EDMWVHVFDFHTGE 261 (264)
Q Consensus 248 ~d~~v~vwd~~~g~ 261 (264)
.++.+..||.++|.
T Consensus 379 dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 379 DNGSIMFWDWKSGH 392 (460)
T ss_pred CceEEEEEecCcCc
Confidence 99999999998874
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=246.52 Aligned_cols=239 Identities=24% Similarity=0.388 Sum_probs=198.0
Q ss_pred EeeccCCCeeeeE-eccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCe
Q 024676 11 VCHGHSRPVVDLF-YSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFT 84 (264)
Q Consensus 11 ~~~~h~~~v~~~~-~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~ 84 (264)
+.+||++.|..+. |+ +|.+|+|||+|.++++|-++.+ ..++...||++.|.+++++..+ .+|+++|.|++
T Consensus 360 ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT 435 (775)
T ss_pred EEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce
Confidence 6689999999998 43 6789999999999999966433 2456778999999999997654 68999999999
Q ss_pred EEEEeCCCCcEE---EE-------eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe
Q 024676 85 AKLWDALTGDEK---HS-------FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL 154 (264)
Q Consensus 85 v~iwd~~~~~~~---~~-------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 154 (264)
+|+|++...+.. .. ..|.+.|++++++|++++++|||+|++.++|+++..+. ...+.+|+..++++.|+
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l-~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL-LGVLSGHTRGVWCVSFS 514 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE-EEEeeCCccceEEEEec
Confidence 999998652211 11 13888999999999999999999999999999984433 34556788899999999
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCCc-
Q 024676 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTE- 231 (264)
Q Consensus 155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~- 231 (264)
+.++ ++++|+.|.+||||.+.++.|+.++++ .+.|..+.|-.+++.| +++.||-|++|++++.+|+.++..+....
T Consensus 515 ~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 515 KNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred cccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 8654 788899999999999999999999985 5678888998888655 55779999999999999999998876644
Q ss_pred eeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 232 SASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 232 ~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
.+...+ ...+|++||.|+.|.+|.
T Consensus 594 aL~~~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 594 ALSVSP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EEeecC-ccceeEecCCCeEEEEee
Confidence 344444 577999999999999994
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=215.16 Aligned_cols=233 Identities=22% Similarity=0.346 Sum_probs=201.2
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
.=|..++|+| .|+++|+|+.|+.+.||++.+. ...+.+.||++-+.++.|-+|+ +++|+|.|.++-+||+
T Consensus 98 ~WVMtCA~sP---Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 98 SWVMTCAYSP---SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDI 173 (343)
T ss_pred eeEEEEEECC---CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEc
Confidence 3467889996 8999999999999999999854 2457799999999999998855 6789999999999999
Q ss_pred CCCcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676 91 LTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (264)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 168 (264)
++++....|. |..-|.++.++| +++.+++|+-|+..++||++.+... +.+..|...|+.+.|+|++.. +++|++|+
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G~a-fatGSDD~ 251 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSGDA-FATGSDDA 251 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee-EeecccccccceEEEccCCCe-eeecCCCc
Confidence 9999888885 888999999999 9999999999999999999988654 455578889999999987654 67889999
Q ss_pred eEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEE
Q 024676 169 GVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIF 243 (264)
Q Consensus 169 ~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 243 (264)
+.|+||+|..+.+..+++ ..+|++++||..|++|.+ ..|.++.+||.=+++.+..+..+.+.. .+...| +|..|
T Consensus 252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av 330 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAV 330 (343)
T ss_pred eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEE
Confidence 999999999988877764 467999999999998765 578899999999998888887776644 456666 59999
Q ss_pred EEecCCCeEEEEE
Q 024676 244 IAGGEDMWVHVFD 256 (264)
Q Consensus 244 ~~gs~d~~v~vwd 256 (264)
++||=|.++|||.
T Consensus 331 ~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWDSTLRIWA 343 (343)
T ss_pred EecchhHheeecC
Confidence 9999999999994
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=227.98 Aligned_cols=244 Identities=23% Similarity=0.342 Sum_probs=205.7
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
.||..+|+.+.|+| +...+++++.|.++++||..+|++.+.++||++.|..++|+..|++++|+|.|-.+++||..+
T Consensus 105 ~g~r~~vt~v~~hp---~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHP---SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hccccceeeeeecc---CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 58999999999997 556889999999999999999999999999999999999999999999999999999999876
Q ss_pred C-cE-EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 93 G-DE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 93 ~-~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
. ++ .....|++.|.++++-|.+.++++++.|++|+.|++.++....... .|...+..++.+ .++.++++|+.|.+|
T Consensus 182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~-~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVN-QDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEec-CCeeEEEecCCCceE
Confidence 3 22 2334688899999999999999999999999999999887765544 455578888765 467899999999999
Q ss_pred EEEECCCCceeEEec-CCCCEEEEEEcC--------------C-CcEEEE-eCCCcEEEEECCCceeeeEEecCCCCce-
Q 024676 171 RLWDARSGKIVQTLE-TKSPVTSAEVSR--------------D-GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTES- 232 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~--------------~-~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~- 232 (264)
++|-+.++++...+. ++.++.+++|.| | +.++.+ +.|++|++||+.++.++-++..+.+..+
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 999999998766553 445788887754 1 246554 5689999999999999998887766554
Q ss_pred eeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
++++| .|+|++++..|+++++||+++++.
T Consensus 340 ~af~p-~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 340 VAFSP-GGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred eEEcC-CCeEEEEEecCCcEEEEEecccee
Confidence 55555 799999999999999999988753
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=210.02 Aligned_cols=224 Identities=21% Similarity=0.265 Sum_probs=187.9
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc--EEEEee-cCCeEEEE
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSFE-HKHIVRAC 108 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~-~~~~v~~~ 108 (264)
-+||++|.|.+||+|...+|.+.+++.-....|+.+++.||+++||+++ ...|||||+.++. ++.+++ |.+.|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 4899999999999999999999999986678999999999999988766 5579999998875 577776 77899999
Q ss_pred EECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec--C
Q 024676 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--T 186 (264)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~ 186 (264)
.|..+++.+++|+.||++|+||++... ......+..+++++...| ++..|++|..+|.|++||+....+...+. .
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 999999999999999999999998744 344456778999998766 45567788888999999999988776663 3
Q ss_pred CCCEEEEEEcCCCcEEEEeCC-CcEEEEECCC------ceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 187 KSPVTSAEVSRDGRYITTADG-SSVKFWDANH------FGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 187 ~~~v~~~~~s~~~~~l~~~~~-~~i~iwd~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
..++.++.+.|||.++++..+ |...+|++-+ .+++..|+.+. ...+..++| ++++|+++|.|.+++||+.+
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecC
Confidence 467999999999999988765 7999999854 34566676654 355666666 69999999999999999987
Q ss_pred cc
Q 024676 259 TG 260 (264)
Q Consensus 259 ~g 260 (264)
+.
T Consensus 246 ~~ 247 (311)
T KOG0315|consen 246 DF 247 (311)
T ss_pred Cc
Confidence 65
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.4e-35 Score=233.23 Aligned_cols=242 Identities=23% Similarity=0.365 Sum_probs=203.3
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 95 (264)
+.+|..|.|.| +|+.|++|+..|...+|+..+-.+-..+..|..+|+++.|++++.+++||+.+|.||+|+.+-...
T Consensus 96 kc~V~~v~WtP---eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 96 KCPVNVVRWTP---EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred ccceeeEEEcC---CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 45899999996 999999999999999999865444444678999999999999999999999999999999876665
Q ss_pred EEEeecC-CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676 96 KHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (264)
Q Consensus 96 ~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd 174 (264)
+....|. ..|++++|+|++..+++|+.|++|++||....... ..+..|.-.+.+++|.|. +.++++++.|..|++||
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee-~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE-RVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWD 250 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh-heeccCCCCcceeccCCc-cceeEEccCCceeEeec
Confidence 5555544 78999999999999999999999999998655432 233567778999999864 55788889999999999
Q ss_pred CCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCe
Q 024676 175 ARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMW 251 (264)
Q Consensus 175 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~ 251 (264)
.++++|+.++. +++-|..+.|+|++.+|++ +.|..++++|++..+.+..|+.+. ...++.++|-...+|++||.|+.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 99999998875 4566999999999998876 558899999999888888887543 45677888888899999999999
Q ss_pred EEEEEcCccee
Q 024676 252 VHVFDFHTGEQ 262 (264)
Q Consensus 252 v~vwd~~~g~~ 262 (264)
|..|.+..-++
T Consensus 331 vvh~~v~~~~p 341 (464)
T KOG0284|consen 331 VVHWVVGLEEP 341 (464)
T ss_pred eEEEecccccc
Confidence 99999864443
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-32 Score=223.80 Aligned_cols=242 Identities=22% Similarity=0.384 Sum_probs=193.8
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee---CCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~---~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
+-|++.|++++|+| ||.++++++.||++.+||..+|+.+..|+ +|++.|++++|+||++.++|+|.|+++||||
T Consensus 187 r~HskFV~~VRysP---DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 187 REHSKFVNCVRYSP---DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccceeeEEECC---CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 47999999999996 99999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCCcEEEEe--------------------------------------------ecCCeEEEEEECCCCCEEEEeeCCCc
Q 024676 90 ALTGDEKHSF--------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI 125 (264)
Q Consensus 90 ~~~~~~~~~~--------------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~ 125 (264)
+.++.+..++ .|.+.|+++..+|++++|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 9776543322 16778999999999999999999999
Q ss_pred EEEeeCCCCCCCCe-------E---eccCC-C------------------------------------------------
Q 024676 126 LRIFDLNRPDAPPR-------E---VGNSS-G------------------------------------------------ 146 (264)
Q Consensus 126 i~~~d~~~~~~~~~-------~---~~~~~-~------------------------------------------------ 146 (264)
|.-|+..++..-.. + +.... +
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence 99999865431100 0 00000 0
Q ss_pred ---------------------CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce---eEEecCCCCEEEEEEcCCCcEE
Q 024676 147 ---------------------SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYI 202 (264)
Q Consensus 147 ---------------------~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l 202 (264)
...+++.+| ++..++.+++|+.|+||.+..... ....++..+++.+++|||+.||
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 023344444 455677788889999999987552 2345677899999999999999
Q ss_pred EEeC-CCcEEEEECCCcee-eeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 203 TTAD-GSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 203 ~~~~-~~~i~iwd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
++++ .+.+.+||..+++. ...+.++ ....+.+|.|+ ..+|++||.|-.|.||+++.
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~-n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN-NKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC-ceEEEeccccceEEEEEccC
Confidence 9987 58999999988765 2333433 45678899985 78999999999999999863
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=237.37 Aligned_cols=240 Identities=27% Similarity=0.456 Sum_probs=196.7
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
.+|...|.+++|+| +|+++++++.|++++|||+ ..+..+++++||...|.+++|+|++.++++|+.|++|||||+.
T Consensus 200 ~~h~~~v~~~~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred cccccceeeeEECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 68999999999996 9999999999999999999 5558899999999999999999999999999999999999999
Q ss_pred CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC--CCeEeccCCC-CeEEEEEecCCCeEEEEeeCC
Q 024676 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSG-SIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~d 167 (264)
+++++..++ |...|..+++++++++|++++.|+.|++||+.++.. .......... .+..+.|+|++.+ ++++..|
T Consensus 277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d 355 (456)
T KOG0266|consen 277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLD 355 (456)
T ss_pred CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEecCC
Confidence 999888876 888999999999999999999999999999988762 2222222233 6888888876665 4456677
Q ss_pred CeEEEEECCCCceeEEecCC-C---CEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC-CCC-ceeeEcCCCC
Q 024676 168 GGVRLWDARSGKIVQTLETK-S---PVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP-CNT-ESASLEPKLG 240 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~~-~---~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 240 (264)
+.+++||++++++...+..+ . .+.+...++++.++.+ +.|+.|.+||+.++..+..+..+ ... ....+++ ..
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TE 434 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-Cc
Confidence 99999999999888777543 2 3444455788888766 45899999999998877777665 332 3344454 47
Q ss_pred CEEEEec--CCCeEEEEEc
Q 024676 241 NIFIAGG--EDMWVHVFDF 257 (264)
Q Consensus 241 ~~~~~gs--~d~~v~vwd~ 257 (264)
.++++++ .|+.+++|..
T Consensus 435 ~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeeeecCcCCCceEEEecC
Confidence 7888888 7999999964
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=227.43 Aligned_cols=232 Identities=19% Similarity=0.346 Sum_probs=191.6
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
-.++.|+|+-|. |+ .+++|+.|++|.|||.++...++.+.||++.|.|+.|. ...++|||.|.+|++||++++
T Consensus 195 e~skgVYClQYD----D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD----DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec----ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence 467789999997 44 57899999999999999999999999999999888875 568899999999999999999
Q ss_pred cEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
+++.++- |...|..+.|+ +.++++++.|.++.+||+.++.... ..+.+|...++.+.|.. .++++++.|++|
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceE
Confidence 9888764 67788888886 5689999999999999997664321 22345778888888742 377788888999
Q ss_pred EEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEEec
Q 024676 171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG 247 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs 247 (264)
|+|+..|++++.++..+ ..|.++++ .+++++++ +|.+|++||+..+.+++.++.++.. .++.|. .+.+++|+
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGa 417 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGA 417 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---Cceeeecc
Confidence 99999999999998765 44777666 67887764 5899999999999999888877653 445553 56799999
Q ss_pred CCCeEEEEEcCccee
Q 024676 248 EDMWVHVFDFHTGEQ 262 (264)
Q Consensus 248 ~d~~v~vwd~~~g~~ 262 (264)
.||+|++||+.++..
T Consensus 418 YDGkikvWdl~aald 432 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALD 432 (499)
T ss_pred ccceEEEEecccccC
Confidence 999999999987754
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=231.55 Aligned_cols=244 Identities=22% Similarity=0.332 Sum_probs=206.2
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
.||...+.+++|+| ||+++|||+.|+.|+|||..+|-++.+|..|+..|.++.|+..+..+++.|-||+||.||+..
T Consensus 347 QgH~~~i~~l~YSp---Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 347 QGHSDRITSLAYSP---DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cccccceeeEEECC---CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 59999999999996 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeecCCeE--EEEEECCCCCEEEEeeCCC-cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 93 GDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 93 ~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
.+..+++..+.++ .+++.+|.|.++.+|+.|. .|++|++.+++.. ..+.+|+++|.+++++|.+. .+++++-|.+
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll-DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT 501 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL-DILSGHEGPVSGLSFSPDGS-LLASGSWDKT 501 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee-ehhcCCCCcceeeEEccccC-eEEeccccce
Confidence 8888888777765 5788899999999999885 4999999988754 55567999999999988655 7888999999
Q ss_pred EEEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEe----------------c-----
Q 024676 170 VRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYN----------------M----- 226 (264)
Q Consensus 170 v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~----------------~----- 226 (264)
||+||+-.. ..+.+++....+..++|+|+|+-++.+ -|+.|.+||......+..+. .
T Consensus 502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 999998644 345677777889999999999887654 58999999997544332221 1
Q ss_pred CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
.....++++++ +|.++++||+...|++|++.++-.
T Consensus 582 ~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 582 GKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred CCceEEEEEcC-CCCEEEecCCcccEEEEECchhhe
Confidence 12234667777 589999999999999999987643
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-31 Score=214.80 Aligned_cols=247 Identities=29% Similarity=0.510 Sum_probs=204.6
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
.+.+|..+|.++.|+| ++++|++++.|+.+++|+..+++....+.+|...+..+.|.+++.++++++.|+.+++||+
T Consensus 4 ~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 4 TLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred HhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 3468999999999996 7889999999999999999988888888999999999999999999999999999999999
Q ss_pred CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
.+++....+. |...+.++.|+|+++++++++.|+.+++||+++.+.. .....+...+.++++.+. ..+++++..++.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~ 158 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPD-GTFVASSSQDGT 158 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-EEeccCCCcEEEEEEcCc-CCEEEEEcCCCc
Confidence 9876555554 6668999999999888888888999999999855432 333356778999999876 446666666799
Q ss_pred EEEEECCCCceeEEecCC-CCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEe
Q 024676 170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAG 246 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g 246 (264)
|++||+++++.+..+..+ .++.++.++|+++.+ +++.++.+++||++..+.+..+.. ........+.++ +.+++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 237 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASG 237 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEE
Confidence 999999988877777654 479999999999655 455689999999998888877743 334556677775 8888888
Q ss_pred cCCCeEEEEEcCcceee
Q 024676 247 GEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 247 s~d~~v~vwd~~~g~~i 263 (264)
+.|+.+++||+.+++.+
T Consensus 238 ~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 238 SEDGTIRVWDLRTGECV 254 (289)
T ss_pred cCCCcEEEEEcCCceeE
Confidence 88999999999877653
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=203.40 Aligned_cols=238 Identities=21% Similarity=0.401 Sum_probs=190.0
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
.+|++.|+.|+|+| .|++|++||.|.++-||.-.+++ ++.+++||+..|.+++|+++|.+|||+|+|++|-||.+
T Consensus 58 ~~hkrsVRsvAwsp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred ccchheeeeeeecC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 58999999999996 89999999999999999887764 68899999999999999999999999999999999998
Q ss_pred CCCc---EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC-CCCCC-CeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 91 LTGD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDAP-PREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 91 ~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
..+. +...+ +|..-|-.+.|||...+|+++++|++||+|.-. ..... ...+..|...+++++|.+.+ .-+++|
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~ 213 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSC 213 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEe
Confidence 7553 33344 488899999999999999999999999999865 33222 24455677789999988765 467889
Q ss_pred eCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCC------ceeeeEE-ec-CCCCceeeEc
Q 024676 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH------FGLVKGY-NM-PCNTESASLE 236 (264)
Q Consensus 165 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~------~~~~~~~-~~-~~~~~~~~~~ 236 (264)
++|++|+||-+.+.- ...++.++..+.+. ++.+.+++.|+.|+++.... ++.+... .. ....++..+.
T Consensus 214 sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDL---SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred cCCcceEeeeeccCc---chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 999999999977332 23455678889998 77666677789999997653 1211111 11 1245677888
Q ss_pred CCCCCEEEEecCCCeEEEEEcC
Q 024676 237 PKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 237 ~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
|.....|++||.||.|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 8667889999999999999864
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-30 Score=241.15 Aligned_cols=243 Identities=16% Similarity=0.237 Sum_probs=195.9
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLW 88 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iw 88 (264)
.....+...|.++.|+| +++.+|++++.|++|++||..+++.+..+.+|.+.|++++|+| ++.+++||+.|++|++|
T Consensus 526 ~~~~~~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 526 VVELASRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603 (793)
T ss_pred eEEecccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence 33334556889999987 3578999999999999999999998999999999999999996 78899999999999999
Q ss_pred eCCCCcEEEEeecCCeEEEEEEC-CCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 89 DALTGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 89 d~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
|+.++.....+.+...+.++.|+ +++.++++|+.|+.|++||++...........|...+..+.|. ++ ..+++++.|
T Consensus 604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D 681 (793)
T PLN00181 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTD 681 (793)
T ss_pred ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECC
Confidence 99999888888777788999995 5789999999999999999987654444555688899999986 33 356677888
Q ss_pred CeEEEEECCCC------ceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC------------
Q 024676 168 GGVRLWDARSG------KIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP------------ 227 (264)
Q Consensus 168 ~~v~iwd~~~~------~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~------------ 227 (264)
++|++||++++ +++..+.. ...+..+.++|++.+++++ .|+.|++|+......+..+...
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 99999999853 45666654 4568899999999888765 5899999998765444333211
Q ss_pred --CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 228 --CNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
......++.+ .+.+|++|+.||.|++|++
T Consensus 762 ~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 762 ASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 1134556776 5889999999999999986
No 35
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.2e-31 Score=227.81 Aligned_cols=226 Identities=20% Similarity=0.289 Sum_probs=175.8
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-------ceEEeeeCCcCCEEEEEECCCC-cEEEEec
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS 80 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-------~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s 80 (264)
+.++.||+++|.+++|+|. ++++|++|+.|++|++|++.++ +.+..+.+|...|.+++|+|++ .+|+||+
T Consensus 68 ~~~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 68 PPILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred CceEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 4567899999999999973 6779999999999999998764 3467889999999999999975 6899999
Q ss_pred CCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-CeEEEEEecCCC
Q 024676 81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQ 158 (264)
Q Consensus 81 ~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~ 158 (264)
.|++|+|||+.++.....+. |...|.+++|+|++++|++++.|++|++||+++++.... ...|.+ ....+.|.+++.
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCC
Confidence 99999999999988777765 788999999999999999999999999999988764333 333443 344567887777
Q ss_pred eEEEEe---eCCCeEEEEECCCCc-eeEEec--CCCCEEEEEEcCCCcEEE-Ee-CCCcEEEEECCCceeeeEEecCC--
Q 024676 159 TILSSC---TDSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC-- 228 (264)
Q Consensus 159 ~~~~~~---~~d~~v~iwd~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~-- 228 (264)
.+++++ +.|+.|++||+++.. ++.... ....+....+++++.+++ ++ .|+.|++||+++++.+.......
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~ 304 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE 304 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence 776655 347999999999764 333332 234566678999997764 44 48899999999988766554432
Q ss_pred CCceeeEcC
Q 024676 229 NTESASLEP 237 (264)
Q Consensus 229 ~~~~~~~~~ 237 (264)
.....++.|
T Consensus 305 ~~~g~~~~p 313 (493)
T PTZ00421 305 PHKGLCMMP 313 (493)
T ss_pred CCcceEecc
Confidence 223444544
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-32 Score=226.85 Aligned_cols=235 Identities=21% Similarity=0.320 Sum_probs=192.0
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
+--..||.+.+|-+ --+++++||.|..||||+.++++.+.+|+.|.+-|++++.+|..-++.|+|+|-+||+||...
T Consensus 52 eV~~~PvRa~kfia---RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 52 EVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred eecccchhhheeee---ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 33456788888885 567999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc-EEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC-CeEEEEeeCCC
Q 024676 93 GD-EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTDSG 168 (264)
Q Consensus 93 ~~-~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~ 168 (264)
+. +.++++ |++.|+.++++| +.+.+++++.|+++|+|.+..+..... +..|...++++++.+.+ ..+++++++|.
T Consensus 129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT-l~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT-LEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee-eeccccCcceEEeccCCCcceEEecCCCc
Confidence 74 556665 999999999999 668899999999999999987665444 44678889999998755 44788999999
Q ss_pred eEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEE-EeCCCcEEEEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEE
Q 024676 169 GVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIA 245 (264)
Q Consensus 169 ~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 245 (264)
+|+|||..+.+|+++++++ ..|+.+.|+|.=.+++ +++|+++|||+..+++..++++..-.. -++.... .+..++.
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~v 286 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAV 286 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEE
Confidence 9999999999999999865 5699999999876654 567999999999999887777664332 2222222 2334555
Q ss_pred ecCCCeE
Q 024676 246 GGEDMWV 252 (264)
Q Consensus 246 gs~d~~v 252 (264)
|...|.|
T Consensus 287 G~Deg~i 293 (794)
T KOG0276|consen 287 GFDEGSV 293 (794)
T ss_pred eccCCcE
Confidence 5444433
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-31 Score=223.74 Aligned_cols=245 Identities=19% Similarity=0.333 Sum_probs=204.5
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCC-CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKD-SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d-~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
-..+|..+.|+. .|.+||.|+.- |++.||+-.+...+...+||...+.+++++|||+++|||+.||.|||||..++
T Consensus 306 s~~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 306 SDQKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ccceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 345788888884 78898887654 78999999888888888999999999999999999999999999999999999
Q ss_pred cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676 94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (264)
Q Consensus 94 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i 172 (264)
-+..++ +|+..|+.++|+..++.+++.+.||++|.||+.....-.....+..-...|++--|.+..+++++.+.=.|++
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 999998 4999999999999999999999999999999976543222222333345666666667665655555558999
Q ss_pred EECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEecCC
Q 024676 173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGED 249 (264)
Q Consensus 173 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d 249 (264)
|+++||+.+..+. ++.||.++.|+|.+..|+++ .|.+||+||+-.. ..+.++.+........+.| +|+.++++..|
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTld 541 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLD 541 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEec
Confidence 9999999998886 45789999999999988775 5999999998543 4577888888888888988 58999999999
Q ss_pred CeEEEEEcCcceee
Q 024676 250 MWVHVFDFHTGEQI 263 (264)
Q Consensus 250 ~~v~vwd~~~g~~i 263 (264)
|.|-+||.+.+.+.
T Consensus 542 gqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 542 GQITFFDIKEAVQV 555 (893)
T ss_pred ceEEEEEhhhceee
Confidence 99999999888765
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.1e-30 Score=206.78 Aligned_cols=241 Identities=27% Similarity=0.461 Sum_probs=203.0
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
....+|..++..+.|.| ++++|++++.|+.+++|+..+++.+..+.+|...|.++.|++++.++++++.|+.+++||
T Consensus 45 ~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 45 RTLKGHTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred EEEecCCcceeEEEECC---CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 44568999999999996 678999999999999999998888888999999999999999988999998899999999
Q ss_pred CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676 90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (264)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 168 (264)
+.+++....+. |...+..+.++|+++++++++.|+.+++||++.++.. .....+...+.++.|.+++..++++ +.++
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~ 199 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSS-SSDG 199 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECCCcCEEEEe-cCCC
Confidence 99877776665 7778999999999998888888999999999866543 3334566789999998877665554 4579
Q ss_pred eEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEE
Q 024676 169 GVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIA 245 (264)
Q Consensus 169 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 245 (264)
.|++||+++++.+..+ .+..++.++.++|++.+++++. ++.+++||+.+++.+..+..+. ....+.+.++ +.+|++
T Consensus 200 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~ 278 (289)
T cd00200 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD-GKRLAS 278 (289)
T ss_pred cEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC-CCEEEE
Confidence 9999999998888877 4556899999999988888776 8999999999888877776433 3456677764 789999
Q ss_pred ecCCCeEEEEE
Q 024676 246 GGEDMWVHVFD 256 (264)
Q Consensus 246 gs~d~~v~vwd 256 (264)
++.|+.+++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.3e-33 Score=222.63 Aligned_cols=239 Identities=18% Similarity=0.253 Sum_probs=198.3
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCC-cCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H-~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
++..|..+|.++.|++ +|+++++|+.+|.|++|...-+. ++.+.+| ...|++++|+|+...++|+|.|++|+|||
T Consensus 133 ilQaHDs~Vr~m~ws~---~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSH---NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HhhhhcccceeEEEcc---CCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence 4468999999999995 99999999999999999886443 4556665 48999999999999999999999999999
Q ss_pred CCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676 90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (264)
Q Consensus 90 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 168 (264)
..-......+ .|.-.|.++.|+|.-.++++++.|+.+++||.++++...... .|+..|..+.|++.+ .+|++++.|.
T Consensus 209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~-N~Llt~skD~ 286 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNG-NWLLTGSKDQ 286 (464)
T ss_pred ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCC-CeeEEccCCc
Confidence 8776554444 377789999999999999999999999999999988764443 567788999999876 6788889999
Q ss_pred eEEEEECCCCceeEEec-CCCCEEEEEEcCCC-cEE-EEeCCCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEE
Q 024676 169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIF 243 (264)
Q Consensus 169 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 243 (264)
.++++|+|+-+.+..+. +...+.+++|+|-. .+| +++.|+.|.+|.+...+++-.+... ..+.+..++| .|++|
T Consensus 287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil 365 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHIL 365 (464)
T ss_pred eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeE
Confidence 99999999888888776 55679999999965 344 4467899999999866666555442 2345677887 69999
Q ss_pred EEecCCCeEEEEE
Q 024676 244 IAGGEDMWVHVFD 256 (264)
Q Consensus 244 ~~gs~d~~v~vwd 256 (264)
++|+.|.++++|.
T Consensus 366 ~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 366 ATGSNDRTVRFWT 378 (464)
T ss_pred eecCCCcceeeec
Confidence 9999999999995
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=204.79 Aligned_cols=238 Identities=24% Similarity=0.362 Sum_probs=198.1
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEe
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD 89 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd 89 (264)
++.||++.|..+.|++ |+++|++++.|++++.||.++|+.++.+++|..-|+++....-+. ++.||+.|+++|+||
T Consensus 85 ~lkgHsgAVM~l~~~~---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMR---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred eeccccceeEeeeecc---CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 4579999999999995 999999999999999999999999999999999999999665554 467899999999999
Q ss_pred CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
+++.+.+.+++.+..++++.|..++..+.+|+-|+.|++||++..+... ....|...|..+..++.+..++ +-+-|.+
T Consensus 162 ~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~-~lsGh~DtIt~lsls~~gs~ll-snsMd~t 239 (338)
T KOG0265|consen 162 IRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY-TLSGHADTITGLSLSRYGSFLL-SNSMDNT 239 (338)
T ss_pred ecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE-EeecccCceeeEEeccCCCccc-cccccce
Confidence 9999999999888899999999999999999999999999998776554 4456788999999888776555 5566699
Q ss_pred EEEEECCC----CceeEEecCC-----CCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCC-CceeeEcCC
Q 024676 170 VRLWDARS----GKIVQTLETK-----SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK 238 (264)
Q Consensus 170 v~iwd~~~----~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (264)
+++||.+- .+++..++.+ -....+.|+|+++++.++ .|+.+.+||......+-.+..+.. .....|.|
T Consensus 240 vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp- 318 (338)
T KOG0265|consen 240 VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP- 318 (338)
T ss_pred EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-
Confidence 99999974 4456655432 234567899999998765 589999999988777766665544 34556666
Q ss_pred CCCEEEEecCCCeEEE
Q 024676 239 LGNIFIAGGEDMWVHV 254 (264)
Q Consensus 239 ~~~~~~~gs~d~~v~v 254 (264)
...++.+++.|++|++
T Consensus 319 ~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYL 334 (338)
T ss_pred CCcEEEEeccCceeEe
Confidence 5789999999999886
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.8e-30 Score=236.85 Aligned_cols=241 Identities=16% Similarity=0.216 Sum_probs=189.4
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----c----eEEeeeCCcCCEEEEEECC-CCcEEEEecCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----D----WIGTFEGHKGAVWSCCLDA-NALFSASGSADF 83 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~----~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~ 83 (264)
.+|...|.+++|+| +|++||+|+.|+.|++|+..+. . ....+.+ ...|.+++|++ ++.++++++.|+
T Consensus 480 ~~~~~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 480 LNSSNLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCC
Confidence 35999999999996 8999999999999999997542 1 1223343 46789999987 467899999999
Q ss_pred eEEEEeCCCCcEEEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEE
Q 024676 84 TAKLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (264)
+|++||+.++..+..+ .|...|++++|+| ++.+|++|+.|++|++||++++..... +. ....+.++.|.++++.++
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~-~~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IK-TKANICCVQFPSESGRSL 633 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-Ee-cCCCeEEEEEeCCCCCEE
Confidence 9999999988777666 4888999999997 788999999999999999987654322 22 345788889877777788
Q ss_pred EEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCc------eeeeEEecCCC-Cce
Q 024676 162 SSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF------GLVKGYNMPCN-TES 232 (264)
Q Consensus 162 ~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~------~~~~~~~~~~~-~~~ 232 (264)
++++.|+.|++||+++.+ .+..+. +...|.++.|.+...+++++.|++|++||++.. ..++.+..+.. ...
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 889999999999998865 344444 456799999985445556677999999999742 45666665443 344
Q ss_pred eeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
..+.+ .+.+|++|+.|+.|++|+....
T Consensus 714 v~~s~-~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 714 VGLSV-SDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEcC-CCCEEEEEeCCCEEEEEECCCC
Confidence 56666 4789999999999999997644
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=6.9e-31 Score=228.12 Aligned_cols=240 Identities=21% Similarity=0.352 Sum_probs=197.6
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
+.||++.|++++|.. .+.+|++||.|+++++||..+|+++..|.||...|.++... ...+++||+|.+||+|++.
T Consensus 245 l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 679999999999974 46799999999999999999999999999999999887764 4667899999999999999
Q ss_pred CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
++..+..+. |..+|+++..+ +.++++|+.|++|++||+.+++...... .|.+.|.++.+.+. ..+.+++.|++|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~--~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE--NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc--ceEEeeeeccce
Confidence 999999988 99999999988 7799999999999999999777654444 48889999865432 567788888999
Q ss_pred EEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC
Q 024676 171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (264)
Q Consensus 171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 248 (264)
++||+++. +++..+.++..+.. .+...++++++ +-|++|++||...+++++++..+.......+.. ....+++++.
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~-~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~-~~~~il~s~~ 472 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVS-SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL-GKEEILCSSD 472 (537)
T ss_pred EeecCCchhhhhhhhcCCccccc-ccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeec-CcceEEEEec
Confidence 99999999 89988887655331 22334456655 458999999999999999998752122222222 1478999999
Q ss_pred CCeEEEEEcCcceee
Q 024676 249 DMWVHVFDFHTGEQI 263 (264)
Q Consensus 249 d~~v~vwd~~~g~~i 263 (264)
|+++++||+.+|+.+
T Consensus 473 ~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLI 487 (537)
T ss_pred CCeeEEEecccCchh
Confidence 999999999998764
No 43
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7e-31 Score=213.88 Aligned_cols=246 Identities=21% Similarity=0.319 Sum_probs=195.1
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--Cc------eEEee--eCC----cCCEEEEEECCCCcEEEE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GD------WIGTF--EGH----KGAVWSCCLDANALFSAS 78 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~------~~~~~--~~H----~~~V~~v~~~~~~~~l~s 78 (264)
.+|+.+|.+++|+|.. ...|++|+.|-..++|++.. .. +...+ .++ ...|.+++|+.+|.+||+
T Consensus 175 l~~~~~V~~~~WnP~~--~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLR--DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred ccCCCceEEEecCchh--hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 3499999999999853 23789999999999998753 11 11112 222 357999999999999999
Q ss_pred ecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC----------------------
Q 024676 79 GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---------------------- 136 (264)
Q Consensus 79 ~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~---------------------- 136 (264)
|+.||.+|||+...+.....-.|..||..+.|+..+.++++++.|+++-+||.-+++.
T Consensus 253 G~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F 332 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF 332 (524)
T ss_pred eecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence 9999999999976554433346999999999999999999999999999999844321
Q ss_pred ------------------CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcC
Q 024676 137 ------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR 197 (264)
Q Consensus 137 ------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~ 197 (264)
+...+.+|.++|.++.|.|. +.+|++|++|++++||......+.+.+..+ ..|..+.|+|
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 12223347788999999875 458899999999999998887777777644 4699999998
Q ss_pred CC---------c-EEEEeCCCcEEEEECCCceeeeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 198 DG---------R-YITTADGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 198 ~~---------~-~l~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
.| . +++++.|.++++||+..+.++.+|..+ .+..+..|.| +|+++++|+.|+.|.+|+..+|+.
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchhe
Confidence 65 2 345677999999999999999999544 4555667776 599999999999999999998874
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-30 Score=205.56 Aligned_cols=247 Identities=14% Similarity=0.264 Sum_probs=197.1
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
..+..|+.+|-+|..+| +.++++||+.|....+|+..++++...+.+|++.|.++.|+.++.+||||..+|.|+||+
T Consensus 58 ~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 45578999999999997 677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676 90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (264)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 168 (264)
..++.....+. ....+.=+.|||-..+|++|+.|+.+-+|.+++.. .......|+.+.++-.+.|+++. ++++.+||
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr-~~tgy~dg 212 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKR-ILTGYDDG 212 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCce-EEEEecCc
Confidence 99998777764 33456667899999999999999999999998753 33444568888999899988654 55677889
Q ss_pred eEEEEECCCCceeEEecC------C-----------------C----------CE-------------------EEEEEc
Q 024676 169 GVRLWDARSGKIVQTLET------K-----------------S----------PV-------------------TSAEVS 196 (264)
Q Consensus 169 ~v~iwd~~~~~~~~~~~~------~-----------------~----------~v-------------------~~~~~s 196 (264)
+|++|++.++++++.+.. . . .| .++.+.
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 999999999998876651 0 0 00 111111
Q ss_pred CCC---cEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 197 RDG---RYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 197 ~~~---~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
|-. .+.+++ -|++|-|||+.+...=+.+........+-|.+ ..+|++++.||.||.||.++|+..
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceE
Confidence 111 233444 48999999998776555555555566666665 678999999999999999999864
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.3e-31 Score=199.59 Aligned_cols=244 Identities=22% Similarity=0.336 Sum_probs=206.1
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEe
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD 89 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd 89 (264)
.+|...|..|+|+ .+|+.|++|+.|+++.+|+++.++++.. ..||.+.|-.++|+|.. ..+++++.|++|++||
T Consensus 17 ~~~~~~v~Sv~wn---~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 17 QGHVQKVHSVAWN---CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhcceEEEEc---ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5899999999999 4999999999999999999988865543 56899999999998754 6789999999999999
Q ss_pred CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
..++++....+....-..+.|+|++++++.+..|..|...|.++.+..... .....+..++|..++..++++.+. |.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~Gl-G~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGL-GC 170 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCC-ce
Confidence 999999998887777778899999999999999999999999865543322 234567778888666666766554 99
Q ss_pred EEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEe
Q 024676 170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAG 246 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g 246 (264)
|.|......+++..++.+ ....++.|+|+|++++++. |..+.+||+...-+++.|.- ..+...++|+. +|++|++|
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASa 249 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASA 249 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeecc
Confidence 999999999999888755 4588899999999998765 77899999999888888854 45566778877 59999999
Q ss_pred cCCCeEEEEEcCcceee
Q 024676 247 GEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 247 s~d~~v~vwd~~~g~~i 263 (264)
|+|..|.|=++.||+.+
T Consensus 250 SEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRV 266 (313)
T ss_pred CccceEEeEecccCCeE
Confidence 99999999999999875
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-29 Score=196.72 Aligned_cols=252 Identities=22% Similarity=0.273 Sum_probs=203.9
Q ss_pred ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC--
Q 024676 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-- 81 (264)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~-- 81 (264)
+++.+-+++..-...|.+|.|++ +|.+|++++.|.++++||..+++.++++..++-.|..++|......++.++.
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred cccccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence 34555666666788999999996 9999999999999999999999999999988889999999877777666666
Q ss_pred CCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 82 D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
|.+||.-++.+++.++.+. |...|+.++.+|-+..+++++.|++||+||++..+.+..... .....+++-| .+.+
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp-~GLi 154 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDP-EGLI 154 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECC-CCcE
Confidence 8999999999999999886 999999999999999999999999999999986654433321 2233456655 4556
Q ss_pred EEEeeCCCeEEEEECCCCc--eeEEec----CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC----
Q 024676 161 LSSCTDSGGVRLWDARSGK--IVQTLE----TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN---- 229 (264)
Q Consensus 161 ~~~~~~d~~v~iwd~~~~~--~~~~~~----~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~---- 229 (264)
+|.+...+.|++||+|+-. +..++. ....++.+.|||||+++.. ...+.+.+.|.-.+....+|....+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 6666665699999999742 334442 3467999999999998655 4567899999999998888876433
Q ss_pred CceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 230 ~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
+..+.+.| ++.++.+|+.||+|++|++++|+++
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEe
Confidence 24667777 5999999999999999999999886
No 47
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.1e-29 Score=220.00 Aligned_cols=252 Identities=14% Similarity=0.206 Sum_probs=183.3
Q ss_pred eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE-------------EeeeCCcCCEEEEEECC-
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-------------GTFEGHKGAVWSCCLDA- 71 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~-------------~~~~~H~~~V~~v~~~~- 71 (264)
+..|..-..|-..|....++ +|+..+++++.+..+..|+...+..+ ..+.||.+.|.+++|+|
T Consensus 10 ~g~~~k~~~~~~~i~~~~~~---~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~ 86 (493)
T PTZ00421 10 QGVPARPDRHFLNVTPSTAL---WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF 86 (493)
T ss_pred ccccCCcccceecccccccc---CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC
Confidence 33443334455555544444 47677788888888888876443221 24789999999999999
Q ss_pred CCcEEEEecCCCeEEEEeCCCCc-------EEEEe-ecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676 72 NALFSASGSADFTAKLWDALTGD-------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG 142 (264)
Q Consensus 72 ~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~ 142 (264)
++.+|+||+.|++|++||+.++. ++..+ .|...|..++|+|++ ++|++++.|++|++||+++++.. ..+.
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~-~~l~ 165 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV-EVIK 165 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-EEEc
Confidence 78899999999999999987642 23333 488899999999975 69999999999999999876533 3445
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC--CEEEEEEcCCCcEE-EEe----CCCcEEEEEC
Q 024676 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYI-TTA----DGSSVKFWDA 215 (264)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l-~~~----~~~~i~iwd~ 215 (264)
.|...+.+++|++++ .++++++.|++|+|||+++++.+..+..+. ....+.|.+++..+ +++ .++.|++||+
T Consensus 166 ~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 166 CHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 577889999999865 467777888999999999999887776543 24567788886554 433 3689999999
Q ss_pred CCce-eeeEEecCCC-Ccee-eEcCCCCCEEEEec-CCCeEEEEEcCcceee
Q 024676 216 NHFG-LVKGYNMPCN-TESA-SLEPKLGNIFIAGG-EDMWVHVFDFHTGEQI 263 (264)
Q Consensus 216 ~~~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~gs-~d~~v~vwd~~~g~~i 263 (264)
++.. ++........ .... .+.+ ++.+|++|| .|+.|++||+.+++.+
T Consensus 245 r~~~~p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 245 RKMASPYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCCCCceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 8764 3444433322 2222 3444 577777776 5999999999887754
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-31 Score=228.06 Aligned_cols=250 Identities=21% Similarity=0.306 Sum_probs=192.7
Q ss_pred CcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC
Q 024676 2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (264)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~ 81 (264)
|=||....-.+..|.+||.+|.|+|..| .+++|+.|..|++|+..+.+++.++.||-+-|+.+.|++.--.++|+|+
T Consensus 37 DYRM~tli~rFdeHdGpVRgv~FH~~qp---lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 37 DYRMGTLIDRFDEHDGPVRGVDFHPTQP---LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred hhhhhhHHhhhhccCCccceeeecCCCC---eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC
Confidence 4455555556679999999999998555 8999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC---Ce------------------
Q 024676 82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PR------------------ 139 (264)
Q Consensus 82 D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~------------------ 139 (264)
|+|||||+..++.++..+. |.+.|++..|+|...+++|+|.|.+||+||+..-+.. ..
T Consensus 114 DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~ 193 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ 193 (1202)
T ss_pred CCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC
Confidence 9999999999999998875 9999999999999999999999999999997421110 00
Q ss_pred -------EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEe-cCCCCEEEEEEcCCCcEEEE-eCCC
Q 024676 140 -------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTL-ETKSPVTSAEVSRDGRYITT-ADGS 208 (264)
Q Consensus 140 -------~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~-~~~~ 208 (264)
...+|.-.++-++|.| .-.++++|++|+.||+|....-+. +.+. .+.++|.++-|+|...++.+ ++|+
T Consensus 194 ~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 194 TDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred cCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence 0112223344445443 335788999999999999875442 2223 34578999999998877655 7799
Q ss_pred cEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 209 SVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
.|++||+.+...+++|.- +...-.++.+|. ..+|++|. |+-+-||.+
T Consensus 273 sirVwDm~kRt~v~tfrrendRFW~laahP~-lNLfAAgH-DsGm~VFkl 320 (1202)
T KOG0292|consen 273 SIRVWDMTKRTSVQTFRRENDRFWILAAHPE-LNLFAAGH-DSGMIVFKL 320 (1202)
T ss_pred cEEEEecccccceeeeeccCCeEEEEEecCC-cceeeeec-CCceEEEEE
Confidence 999999999999999864 333444455553 44454443 344555543
No 49
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-30 Score=212.59 Aligned_cols=240 Identities=18% Similarity=0.300 Sum_probs=198.4
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~ 92 (264)
...+.|+.+.|.. ||++|++|...|.|+|+|..+..-++.+.+|+++|+.+.|+|+ ++.+++|++|+.+++||+.+
T Consensus 66 rFk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 66 RFKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hhccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3456788898984 9999999999999999996665567889999999999999985 46689999999999999999
Q ss_pred CcEEEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 93 GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 93 ~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
+..+..+ .|++.|++.+|+| ++.+++|||+|++||+||++.... .....+|..+|..+.+.|++. ++++++. ..|
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~elnhg~pVe~vl~lpsgs-~iasAgG-n~v 219 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVELNHGCPVESVLALPSGS-LIASAGG-NSV 219 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEEecCCCceeeEEEcCCCC-EEEEcCC-CeE
Confidence 8764444 4899999999999 466899999999999999987643 233346888999999998765 4556555 689
Q ss_pred EEEECCCCcee-EEe-cCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEec
Q 024676 171 RLWDARSGKIV-QTL-ETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247 (264)
Q Consensus 171 ~iwd~~~~~~~-~~~-~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 247 (264)
|+||+-+|..+ ..+ +++..|+|+.+..++..| +++-|+.+++||+.+++.++++.++....+++.+| +++.++.|-
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC-CCceEEEec
Confidence 99999966543 333 367789999999988655 55669999999999999999999999999999998 588899999
Q ss_pred CCCeEEEEEcCcc
Q 024676 248 EDMWVHVFDFHTG 260 (264)
Q Consensus 248 ~d~~v~vwd~~~g 260 (264)
+||.+.+=+....
T Consensus 299 snGlv~~rr~~~k 311 (487)
T KOG0310|consen 299 SNGLVSIRRREVK 311 (487)
T ss_pred ccceeeeehhhcc
Confidence 9998887654433
No 50
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=222.04 Aligned_cols=244 Identities=20% Similarity=0.295 Sum_probs=199.7
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
-|-.++|..+.|-- |+.++|+.++..+.+|+++..+..+. .+.||+..|.++....+|.+++|||+|+++++|.++.
T Consensus 320 vG~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 320 VGYNDEILDMKFLG--PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred cCCchhheeeeecC--CccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 47777888888863 57789999999999999988776654 7899999999999777889999999999999998855
Q ss_pred CcEEE-----EeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCC--e------EeccCCCCeEEEEEecCCC
Q 024676 93 GDEKH-----SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP--R------EVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 93 ~~~~~-----~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~--~------~~~~~~~~i~~~~~~~~~~ 158 (264)
+.... ...|++.|.+++++.. ..+++++|.|+++++|+++..+... . ....|...|++++..|++
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd- 475 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND- 475 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-
Confidence 43221 1248889999999774 4788999999999999997622111 1 113467789999988754
Q ss_pred eEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC-CCCceeeE
Q 024676 159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP-CNTESASL 235 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~ 235 (264)
.++++|+.|++.+||+++.++.+..+..+ ..+-++.|+|+.+.+++ +.|.+|+||.+.++.++++|..+ +......|
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 68999999999999999988888888765 45999999999888765 55899999999999999999865 44556666
Q ss_pred cCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 236 EPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 236 ~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
.. .+..|++++.||.+++|+.++++
T Consensus 556 ~~-~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 556 IR-NGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ee-CCcEEEeccCCCcEEEEeccchh
Confidence 65 48999999999999999999876
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=215.05 Aligned_cols=244 Identities=19% Similarity=0.294 Sum_probs=189.2
Q ss_pred CcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC
Q 024676 2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (264)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~ 81 (264)
|++...+.+++-||++.|.|+.|. .+.+++||.|.+|++||.++|+++.++-+|...|..+.|+ +.+++|+|+
T Consensus 223 D~n~~~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSk 295 (499)
T KOG0281|consen 223 DKNSLECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSK 295 (499)
T ss_pred ccccHHHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecC
Confidence 667777888889999999999996 4699999999999999999999999999999999999997 468899999
Q ss_pred CCeEEEEeCCCCcEEE----EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676 82 DFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (264)
Q Consensus 82 D~~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (264)
|.++.+||+.+...+. ...|...|+.+.|+ ++++++++.|++|++|++.+.+.. ..+..|+-.|.|..+ .
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv-Rtl~gHkRGIAClQY---r 369 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV-RTLNGHKRGIACLQY---R 369 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee-hhhhcccccceehhc---c
Confidence 9999999987754211 12377789998775 679999999999999999887754 334456666766655 4
Q ss_pred CeEEEEeeCCCeEEEEECCCCceeEEecCCC-CEEEEEEcCCCcEEE-EeCCCcEEEEECCCceeeeEE----ec---CC
Q 024676 158 QTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGY----NM---PC 228 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~----~~---~~ 228 (264)
+.++++|+.|.+|++||++.|.++..++++. -|.++.|. .+.++ ++=||+|++||+.....-+.. .. ..
T Consensus 370 ~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 370 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence 5688889999999999999999998887664 48888885 34454 455999999999765322111 10 01
Q ss_pred CC-ceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 229 NT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 229 ~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
+. ..+.+.. +...+++++-|.+|.+||+..|-
T Consensus 448 hsgRVFrLQF-D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 448 HSGRVFRLQF-DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred ccceeEEEee-cceEEEeccCCCeEEEEEcCCCC
Confidence 11 1222222 24578899999999999998763
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=1.7e-31 Score=209.01 Aligned_cols=242 Identities=24% Similarity=0.351 Sum_probs=201.8
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--------eeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--------FEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--------~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
|.+.-+-|..|+| ||+||++||.||-+.+|+..+|+..+. |-.|.++|.|+.|+.|...++||+.||.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 5555566788885 999999999999999999999976543 44588999999999999999999999999
Q ss_pred EEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676 86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (264)
|+|.+.+|.+++.+. |...|+++.|+.++..+++++.|.++|+..+.+++...+. ..|...++...|.+++ +.+++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG-~~iis 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDG-HHIIS 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCC-CeEEE
Confidence 999999999998885 8889999999999999999999999999999988765444 4577788888887655 55667
Q ss_pred eeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCceeeeEEecC----CCCceee
Q 024676 164 CTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMP----CNTESAS 234 (264)
Q Consensus 164 ~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~~ 234 (264)
++.||+|++|+.++.+|+.+++. ..+|+++..-|.+ .++++-..+++.|.++. +..+++|... .......
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 78889999999999999988854 4578888887765 46677667899998884 4567777542 3455667
Q ss_pred EcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 235 ~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
.+|+ |+++.+.++|+.++.|.+.+|+.
T Consensus 445 lSpk-GewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 445 LSPK-GEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred ecCC-CcEEEEEccCcEEEEEEeecCce
Confidence 7775 99999999999999999988753
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=2.6e-29 Score=192.06 Aligned_cols=239 Identities=21% Similarity=0.359 Sum_probs=184.8
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-c--eEEee-eCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-D--WIGTF-EGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~--~~~~~-~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
..+.||++.|+.++|+|-. |..||+|+.|+.||+|+...+ . +...+ .+|+-.|++++|+|.+++|++||-|.++
T Consensus 8 ~~~~gh~~r~W~~awhp~~--g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGK--GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred EeecCCCCcEEEEEeccCC--ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 3457999999999999832 789999999999999998843 2 33334 4799999999999999999999999999
Q ss_pred EEEeCCCC--cEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC-C-CeEeccCCCCeEEEEEecCCCeE
Q 024676 86 KLWDALTG--DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-P-PREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 86 ~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
-||.-..+ ++..+++ |+..|-+++|+++|++|++|+.|+.+-+|.+..... . ...+..|..-+-.+.|.|. +-+
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt-~dl 164 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT-EDL 164 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-cce
Confidence 99987765 4566665 889999999999999999999999999999864322 1 1233457778888888764 457
Q ss_pred EEEeeCCCeEEEEECC-CC--ceeEEecCC-CCEEEEEEcCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCC-Cceee
Q 024676 161 LSSCTDSGGVRLWDAR-SG--KIVQTLETK-SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCN-TESAS 234 (264)
Q Consensus 161 ~~~~~~d~~v~iwd~~-~~--~~~~~~~~~-~~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~ 234 (264)
|++++.|++||+|+-. .. ++++++..+ +.|-+++|+|.|.. ..+++|++++||-..+.- . ..+.. ...+.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~--~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--S--GMHSRALYDVP 240 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--c--hhcccceEeee
Confidence 8899999999999876 33 467777655 46999999999855 556678999999865220 0 01111 12233
Q ss_pred EcCCCCCEEEEecCCCeEEEEEcC
Q 024676 235 LEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 235 ~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+. ...+++++.|+.|++|.-.
T Consensus 241 W~---~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 241 WD---NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ec---ccceEeccCCCEEEEEEec
Confidence 32 4679999999999999654
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=1e-31 Score=203.24 Aligned_cols=243 Identities=18% Similarity=0.273 Sum_probs=200.6
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
.+.||++.|+....+. +....|++++|.+.++||.-+|..+..|+ |+..|.+++|+.|..+|+||+.++.+||+|+
T Consensus 54 tfeghkgavw~~~l~~---na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNK---NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred eeeccCcceeeeecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 4579999999876663 55577999999999999999999888887 9999999999999999999999999999998
Q ss_pred CCCc--EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676 91 LTGD--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (264)
Q Consensus 91 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~ 168 (264)
+..+ +...-.|...|..+.|...++.+++.+.|+++|+||.+++....... .+.++.++..++++.. ++.+ +.+
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~i-lTia-~gs 205 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRI-LTIA-YGS 205 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCE-EEEe-cCc
Confidence 7653 22333488899999999999999999999999999999887654443 3457788887776654 4333 447
Q ss_pred eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEe-cC-CCCceeeEcCCCCCEEEE
Q 024676 169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYN-MP-CNTESASLEPKLGNIFIA 245 (264)
Q Consensus 169 ~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 245 (264)
.|++||..+...+..++....|.+..++|+..++ ++++|..++-||..+++.+..|. .+ ...-+..|.| +|...++
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAs 284 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYAS 284 (334)
T ss_pred eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeec
Confidence 9999999999999999998999999999997655 45668999999999998887773 23 3344667777 6999999
Q ss_pred ecCCCeEEEEEcCccee
Q 024676 246 GGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 246 gs~d~~v~vwd~~~g~~ 262 (264)
||+||+||+|-+..++.
T Consensus 285 GSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCceEEEEEecCCCc
Confidence 99999999999877653
No 55
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=5.3e-32 Score=214.13 Aligned_cols=250 Identities=20% Similarity=0.269 Sum_probs=205.4
Q ss_pred cceeecceEe--eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676 3 KRKVAVPLVC--HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (264)
Q Consensus 3 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s 80 (264)
+|++++|.++ .||.+.|.+++-+|..+ ..+++||.||.|++||+.+..++.+|+.|.+.|..++++. ..++|++
T Consensus 51 eR~fakPFv~~L~gHrdGV~~lakhp~~l--s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg 126 (433)
T KOG0268|consen 51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKL--STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG 126 (433)
T ss_pred HHHhhccchhhccccccccchhhcCcchh--hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec
Confidence 4789999987 59999999999998553 4789999999999999999999999999999999999987 5678999
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 81 ~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
+|++||.|.+.. .++.++.....+..+..+..+..++||+. .|-+||....... .....-...+.++.++|-...+
T Consensus 127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv-~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPV-SSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred CCcceeeeeccC-CcceeeeccccccccccccccccccccCc--eeeecccccCCcc-ceeecCCCceeEEecCCCcchh
Confidence 999999999766 46777777777888888887888998884 5889998654433 3333345678999999988889
Q ss_pred EEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCc-eeeeEEecCCC-CceeeEcC
Q 024676 161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEP 237 (264)
Q Consensus 161 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~ 237 (264)
|++|..|+.|-+||+|++++++.+.....-+.++|+|++..+ ++.+|..+..+|+++. +++..|.-+.. .....++|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 999988999999999999999888777788899999977444 4556889999999986 44555554433 33455666
Q ss_pred CCCCEEEEecCCCeEEEEEcCcce
Q 024676 238 KLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 238 ~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
.|+.|++||.|.+||||.+..|.
T Consensus 283 -tG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 283 -TGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred -CcchhccccccceEEEeecCCCc
Confidence 69999999999999999988764
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2.8e-30 Score=205.42 Aligned_cols=241 Identities=20% Similarity=0.326 Sum_probs=192.5
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC---CcEEEEecCCCeEEEEe
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWD 89 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~---~~~l~s~s~D~~v~iwd 89 (264)
.-|.+=|.+|.-. +.++++|++||.+++|+.. |+.+.++.||.++|.+++|... ...++++|.|+++++|.
T Consensus 102 ~~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA-----SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred ccchhhhhhhccc-----CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 4577777666443 5799999999999999975 8888999999999999888532 34589999999999999
Q ss_pred CCCCcEEEE-----eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC------------------------CCCCeE
Q 024676 90 ALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP------------------------DAPPRE 140 (264)
Q Consensus 90 ~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~------------------------~~~~~~ 140 (264)
.+.++.... -.|+.+|.++...+++..+++|++|.++++|+.+.. +.+...
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 887753322 248889999999999999999999999999993210 112334
Q ss_pred eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCce
Q 024676 141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG 219 (264)
Q Consensus 141 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~ 219 (264)
+..|..++..+.|.+ ...+.+++.|.+|+.||+.++.....+..+.+.+++.++|..++|+++ .|+.|++||.|++.
T Consensus 256 l~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 567888999999987 346777888899999999999999999888999999999998888765 58999999999863
Q ss_pred -ee--eEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 220 -LV--KGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 220 -~~--~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
.+ ..|-.+.+ .....++|....+|++||.|+++++||+++-.
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 22 33333444 33456777777899999999999999998654
No 57
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.3e-30 Score=199.15 Aligned_cols=242 Identities=15% Similarity=0.212 Sum_probs=198.9
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc--EEEEecCCCeEEE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAKL 87 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~--~l~s~s~D~~v~i 87 (264)
..+..|..+|.+|+-+ |.++|+||.|.+|+|||..+...++.+..|.+.|.++.|.+... +|++|+.||.|.+
T Consensus 37 F~~~aH~~sitavAVs-----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS-----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccceeEEEec-----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 3446899999999875 78999999999999999999988899999999999999998765 8999999999999
Q ss_pred EeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676 88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (264)
Q Consensus 88 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (264)
|+...=+.+..+. |.+.|+.++.||.+++.++.+.|+.+++||+-.++........+ .-..+.|+|.+.++++.+ .
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~-~ 188 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSG-R 188 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEe-c
Confidence 9998877666664 88889999999999999999999999999997776544433333 334488999888776664 3
Q ss_pred CCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCce-ee-EcCCCCCEEE
Q 024676 167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES-AS-LEPKLGNIFI 244 (264)
Q Consensus 167 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 244 (264)
+.|-||.+.+.+....+.....+.++.|-..+.++++++++.|++||-....+...|..+.+... +. +..+.+++++
T Consensus 189 -~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 189 -NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred -cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence 58999999998877766665668888888777888888899999999988777777766655432 22 3444689999
Q ss_pred EecCCCeEEEEEcCcc
Q 024676 245 AGGEDMWVHVFDFHTG 260 (264)
Q Consensus 245 ~gs~d~~v~vwd~~~g 260 (264)
++|.||.|++||++.-
T Consensus 268 TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 268 TASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCceEEEEEcccc
Confidence 9999999999998643
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-30 Score=198.02 Aligned_cols=240 Identities=20% Similarity=0.246 Sum_probs=192.5
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~ 92 (264)
-.+.+-.++|++. ..+.+++++.||++++||.... .++..|+.|+..|.++.|++. +..++++|.|++||+|+..-
T Consensus 59 ~~D~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 3456778999974 4468899999999999995433 468889999999999999975 45678889999999999988
Q ss_pred CcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 93 GDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 93 ~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
+..+.++. |...|....|+| ..++++++|.|+++++||++..... +.+..|..++.++.|+..+..++++++.|+.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 87777774 888999999999 5688999999999999999877543 44667888999999999999999999999999
Q ss_pred EEEECCCCc-eeEEecCC-CCEEEEEEcCCCc-EEEEeC-CCcEEEEECCCc-eeeeEEecCCCCc-eeeEcCCCCCEEE
Q 024676 171 RLWDARSGK-IVQTLETK-SPVTSAEVSRDGR-YITTAD-GSSVKFWDANHF-GLVKGYNMPCNTE-SASLEPKLGNIFI 244 (264)
Q Consensus 171 ~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~~~-~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 244 (264)
|.||+|.-+ ++..+..+ -.|..+++||-.. +|++++ |-+++|||.... ..+.++..+.... -+.++.-.+.+++
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence 999999855 45556544 4699999999863 455554 889999999754 3455555444433 2344444578999
Q ss_pred EecCCCeEEEEEc
Q 024676 245 AGGEDMWVHVFDF 257 (264)
Q Consensus 245 ~gs~d~~v~vwd~ 257 (264)
+.|=|+.++||+.
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 9999999999984
No 59
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=204.50 Aligned_cols=239 Identities=21% Similarity=0.349 Sum_probs=201.3
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
+-||-..|.++++++..| ||.+++.|+.|+-||++.++.++.+.||-..|++++..|.-..++||++|.++|+||++
T Consensus 189 ltGhi~~vr~vavS~rHp---YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR 265 (460)
T KOG0285|consen 189 LTGHIETVRGVAVSKRHP---YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR 265 (460)
T ss_pred ecchhheeeeeeecccCc---eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec
Confidence 358999999999998777 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
+...+..+. |..+|..+.+.|-+..+++|+.|.+|++||++.++. .....+|+..+.+++..|. .+.+++++. .-|
T Consensus 266 tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~-e~~fASas~-dni 342 (460)
T KOG0285|consen 266 TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPK-ENLFASASP-DNI 342 (460)
T ss_pred ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCc-hhhhhccCC-ccc
Confidence 998888876 999999999999888899999999999999987754 3455678888999987664 456666666 369
Q ss_pred EEEECCCCceeEEecCCC-CEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec---CC------CCceeeEcCCCC
Q 024676 171 RLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM---PC------NTESASLEPKLG 240 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~---~~------~~~~~~~~~~~~ 240 (264)
+-|++..+..++.+..+. -+++++...|+.++++++.+.|.+||-+.+-.-+..+. +. .+...+|.. .+
T Consensus 343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg 421 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TG 421 (460)
T ss_pred eeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cC
Confidence 999999999887776554 48899999999999999999999999987643333321 11 112334443 58
Q ss_pred CEEEEecCCCeEEEEEc
Q 024676 241 NIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 241 ~~~~~gs~d~~v~vwd~ 257 (264)
..|++|..|.+|++|.-
T Consensus 422 ~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYKE 438 (460)
T ss_pred ceEEeccCCcceEEEec
Confidence 88999999999999964
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.4e-31 Score=213.42 Aligned_cols=243 Identities=21% Similarity=0.288 Sum_probs=203.8
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
+++.|...+..+.|-+ +...|++|+.|..|.+|++...+ .+.++.|-.+.|.++.|.++++++++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4578999999999996 44689999999999999987665 678899999999999999999999999999999999
Q ss_pred eCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 89 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
++.+.....++. |...|+.+.+......+++|+.|++||.||+.+.......+..+ ....++.. ...++++..|
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~~~---~~~~~SgH~D 321 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIVCS---ISDVISGHFD 321 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceEec---ceeeeecccc
Confidence 999988777775 89999999998877779999999999999998765543333222 23333322 3457788888
Q ss_pred CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecC-----CCCceeeEcCCCCC
Q 024676 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMP-----CNTESASLEPKLGN 241 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 241 (264)
++||+||.++..+...+..+..|.++..++++..+ +++.|.++.+.|+++++....|... +......|+| +++
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~ 400 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGS 400 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCc
Confidence 99999999999999999988899999999999765 5566889999999999998888653 3445566777 699
Q ss_pred EEEEecCCCeEEEEEcCccee
Q 024676 242 IFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 242 ~~~~gs~d~~v~vwd~~~g~~ 262 (264)
|+++||.||.|+||++.+|+.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred eeeeccCCCcEEEEEccCceE
Confidence 999999999999999988864
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-29 Score=201.21 Aligned_cols=243 Identities=22% Similarity=0.362 Sum_probs=188.0
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce----EEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW----IGTFEGHKGAVWSCCLDANALFSASGSADF 83 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~----~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~ 83 (264)
..++.-||+++|..++|.-..+..+.++++|.|.++++|-.+.++. +...+||+..|-+|+..+++..++|||.|.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 4456689999999888875444456899999999999998777653 234469999999999999999999999999
Q ss_pred eEEEEeCCCC-------------------------cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676 84 TAKLWDALTG-------------------------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (264)
Q Consensus 84 ~v~iwd~~~~-------------------------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (264)
+++||+..+. .++.++ .|..+|..+.|++ ...++++++|.+|+.||++++...
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~ 294 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK 294 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence 9999993211 112222 2888999999999 668999999999999999988765
Q ss_pred CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc---eeEEe-cCCCCEEEEEEcCCCcE--EEEeCCCcEE
Q 024676 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTL-ETKSPVTSAEVSRDGRY--ITTADGSSVK 211 (264)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~---~~~~~-~~~~~v~~~~~s~~~~~--l~~~~~~~i~ 211 (264)
.... .+.++.++++.+ ...++++++.|..+++||.|++. +.+++ .+.+.|.++.++|...+ +.++-|++++
T Consensus 295 ~~~~--~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 295 STLT--TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred eeee--cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 4444 345789999887 45577788888999999999874 23444 45567999999998754 3445699999
Q ss_pred EEECCCce-eeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 212 FWDANHFG-LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 212 iwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
+||+|.-. ++..+..+.. ..++.+. .+.++++||.|.+++++.
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEec
Confidence 99999865 6655544432 3344443 478999999999999996
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-30 Score=223.95 Aligned_cols=243 Identities=20% Similarity=0.312 Sum_probs=195.9
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
..-+..|.+|.|+|.-| +++++-..|.|++||.+=+.++..|..|.++|+.++|+|++.+++||++|..||+|+..+
T Consensus 6 EskSsRvKglsFHP~rP---wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRP---WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hcccccccceecCCCCC---EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 34566788999999766 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 93 ~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
.+++.++ .|-+.|+.+.||+.-..++|+|.|.+|++|+.-++... ....+|+..+-|.+|.|. +-++++++-|.+||
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i-avltGHnHYVMcAqFhpt-EDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI-AVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVR 160 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-EEEecCceEEEeeccCCc-cceEEEecccceEE
Confidence 9888776 48899999999999999999999999999999776554 344567778887776654 44677888889999
Q ss_pred EEECCCCc---------------------------e--eEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCcee
Q 024676 172 LWDARSGK---------------------------I--VQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL 220 (264)
Q Consensus 172 iwd~~~~~---------------------------~--~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~ 220 (264)
+||...-+ + .+.++++ ..|+-++|+|.--++++ ++|+.|++|.....+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99975311 0 0122223 35888999998777665 5679999999865432
Q ss_pred --eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 221 --VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
+.+...+.+..+..++.+-.+++++.|+|++|||||++..
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 4555556555555444334789999999999999998754
No 63
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=8.8e-29 Score=215.78 Aligned_cols=223 Identities=17% Similarity=0.302 Sum_probs=169.5
Q ss_pred EEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCc--------EEEEe-ecCCeE
Q 024676 36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGD--------EKHSF-EHKHIV 105 (264)
Q Consensus 36 t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~--------~~~~~-~~~~~v 105 (264)
+|+.++.+++|+......+..+.+|.++|.+++|+|+ +.+|+||+.|++|+|||+.++. +...+ .|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 3667888899988777778889999999999999997 7899999999999999997642 12222 478899
Q ss_pred EEEEECCCCCE-EEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe
Q 024676 106 RACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184 (264)
Q Consensus 106 ~~~~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~ 184 (264)
.+++|+|++.. +++++.|++|++||+++++.... + .+...+.+++|++++. ++++++.|+.|+|||+++++.+..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i-~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-I-NMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-E-ecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEE
Confidence 99999998875 56899999999999987754322 2 2456799999998765 5566667799999999999988877
Q ss_pred cCCC-CEE-----EEEEcCCCcEEE-EeCC----CcEEEEECCC-ceeeeEEecCCCCc--eeeEcCCCCCEEEEecCCC
Q 024676 185 ETKS-PVT-----SAEVSRDGRYIT-TADG----SSVKFWDANH-FGLVKGYNMPCNTE--SASLEPKLGNIFIAGGEDM 250 (264)
Q Consensus 185 ~~~~-~v~-----~~~~s~~~~~l~-~~~~----~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gs~d~ 250 (264)
..+. .+. ...+++++.+++ ++.+ +.|+|||+++ .+++..+.+..... ...+.++.+.+|++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 6543 222 223568877655 4544 4799999996 45666665543332 2344465688999999999
Q ss_pred eEEEEEcCcce
Q 024676 251 WVHVFDFHTGE 261 (264)
Q Consensus 251 ~v~vwd~~~g~ 261 (264)
.||+|++..+.
T Consensus 286 tIr~~e~~~~~ 296 (568)
T PTZ00420 286 NCRYYQHSLGS 296 (568)
T ss_pred eEEEEEccCCc
Confidence 99999997664
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-30 Score=209.79 Aligned_cols=246 Identities=26% Similarity=0.357 Sum_probs=203.1
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
+..-.+|..|.|+|..|+. +.+|+|. .+.+|+..+...+++|..-+..|.++.|-.||.+++.|...|.|+++|+.+
T Consensus 23 ~ke~~~vssl~fsp~~P~d-~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYD-FAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccccCcceeEecCCCCCCc-eEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 3455689999999988864 4455554 478899888887888888889999999999999999999999999999666
Q ss_pred CcEEEE-eecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 93 GDEKHS-FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 93 ~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
...++. ..|+.|+..+.|+|++ ..+++|+.|+.+++||+.+... ...+..|+..+.+.++.|..++++++|+.||+|
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 443443 3599999999999965 5566788889999999987764 556678999999999999999999999999999
Q ss_pred EEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee--EEecCCCCceeeEcCCCCCEEEEec
Q 024676 171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYNMPCNTESASLEPKLGNIFIAGG 247 (264)
Q Consensus 171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gs 247 (264)
|+||.++. ..+.++++..||.++.+-|.|..++++.+..+++||+.++...- ..+++....+.++.. +++.|++||
T Consensus 179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~s 257 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGS 257 (487)
T ss_pred EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecc
Confidence 99999987 67888999999999999999999999989999999998664432 222344556777776 478999999
Q ss_pred CCCeEEEEEcCcceee
Q 024676 248 EDMWVHVFDFHTGEQI 263 (264)
Q Consensus 248 ~d~~v~vwd~~~g~~i 263 (264)
.|+.|++||+++.+.+
T Consensus 258 LD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVV 273 (487)
T ss_pred cccceEEEEccceEEE
Confidence 9999999998766543
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=197.66 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=178.2
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC------------C------ceEEeeeCCcCCEEEEEECC
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------G------DWIGTFEGHKGAVWSCCLDA 71 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~------------~------~~~~~~~~H~~~V~~v~~~~ 71 (264)
..+-.|+.+..+-+|+| ||.++||||.|-+|+|.|++- | ..+++|=.|-++|..+.|+|
T Consensus 106 ~ylt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34567999999999996 999999999999999998761 1 24678888999999999999
Q ss_pred CCcEEEEecCCCeEEEEeCCCCcEE---EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe--EeccCCC
Q 024676 72 NALFSASGSADFTAKLWDALTGDEK---HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSG 146 (264)
Q Consensus 72 ~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~ 146 (264)
....|++|++|++||++|......+ ..+....+|+++.|+|.|.+|+.|..-.++++||+++.+.-.. ....|.+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 9999999999999999998654332 2345677999999999999999999999999999987643221 2235778
Q ss_pred CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec---CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeee
Q 024676 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK 222 (264)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~ 222 (264)
.|.++.+++.+ .+.++++.||.|||||=-+++|+.++. ....|.++.|+.||+|+.++ -|..+++|.+.++++++
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 99999998754 567788999999999999999998874 34679999999999998765 58899999999999988
Q ss_pred EEec
Q 024676 223 GYNM 226 (264)
Q Consensus 223 ~~~~ 226 (264)
.|..
T Consensus 342 ~YtG 345 (430)
T KOG0640|consen 342 EYTG 345 (430)
T ss_pred EEec
Confidence 8864
No 66
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.5e-28 Score=214.32 Aligned_cols=226 Identities=17% Similarity=0.221 Sum_probs=166.0
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--------eEEeeeCCcCCEEEEEECCCCcE-EEEec
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--------WIGTFEGHKGAVWSCCLDANALF-SASGS 80 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--------~~~~~~~H~~~V~~v~~~~~~~~-l~s~s 80 (264)
..+.||.++|.+|+|+|. ++++|++|+.|++|++|++.++. .+..+.+|...|.+++|+|++.. ++|++
T Consensus 68 ~~L~gH~~~V~~lafsP~--~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPC--FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred EEEcCCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 456799999999999972 36799999999999999997542 34568899999999999998865 57999
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEE-----Eec
Q 024676 81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA-----WLH 155 (264)
Q Consensus 81 ~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~-----~~~ 155 (264)
.|++|+|||+.++.....+.+...|.++.|+|++.+|++++.|+.+++||+++++.. .....|.+.+.... +.+
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEcC
Confidence 999999999999987777778888999999999999999999999999999987654 33444555443322 235
Q ss_pred CCCeEEEEeeCC---CeEEEEECCC-CceeEEecCCCC---EEEEEEcCCCcEEEE-eCCCcEEEEECCCcee--eeEEe
Q 024676 156 SDQTILSSCTDS---GGVRLWDARS-GKIVQTLETKSP---VTSAEVSRDGRYITT-ADGSSVKFWDANHFGL--VKGYN 225 (264)
Q Consensus 156 ~~~~~~~~~~~d---~~v~iwd~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~--~~~~~ 225 (264)
++..+++++.++ ++|+|||+++ .+++..+..... +......++|.++++ ..|+.|++|++..... +..|.
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~ 304 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK 304 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc
Confidence 556666666553 4799999995 556655543322 222333455776654 5689999999976532 23333
Q ss_pred cCCCCceeeEcCC
Q 024676 226 MPCNTESASLEPK 238 (264)
Q Consensus 226 ~~~~~~~~~~~~~ 238 (264)
........++.|+
T Consensus 305 s~~p~~g~~f~Pk 317 (568)
T PTZ00420 305 SCSPFRSFGFLPK 317 (568)
T ss_pred cCCCccceEEccc
Confidence 2333344556554
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.3e-29 Score=216.38 Aligned_cols=238 Identities=26% Similarity=0.402 Sum_probs=197.4
Q ss_pred ec-cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe-eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 13 HG-HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 13 ~~-h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~-~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
.+ |...+.+..|+ ..++++++.|.++.+|+..++..+.. +.||.+.|+++++..-+.++++||.|+++|+||+
T Consensus 204 ~~~~~~~~~~~q~~-----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH-----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cccCcchhhhheee-----cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 44 55567777776 34789999999999999999988877 9999999999999987889999999999999999
Q ss_pred CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
.++.+...+. |...+.++... ..++++|+.|.++++|++..+...... ..|.++|.++... +.++++++.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~---~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD---EPLLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec---CCEEEEEecCce
Confidence 9999999987 88888777554 446788999999999999877654333 3489999999875 446777888899
Q ss_pred EEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEec
Q 024676 170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGG 247 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 247 (264)
|++||+++++++..+..+ ..|.++.+.+....+.++-|++|++||+++. +++.+++.+..... .+.. .+.++++++
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~-~l~~-~~~~Lvs~~ 430 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS-SLLL-RDNFLVSSS 430 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccc-cccc-ccceeEecc
Confidence 999999999999999755 5699998887655666777999999999999 99998887655442 2222 478999999
Q ss_pred CCCeEEEEEcCcceee
Q 024676 248 EDMWVHVFDFHTGEQI 263 (264)
Q Consensus 248 ~d~~v~vwd~~~g~~i 263 (264)
.|++|++||..+++.+
T Consensus 431 aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECL 446 (537)
T ss_pred ccccEEEeecccCcee
Confidence 9999999999988764
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=202.44 Aligned_cols=248 Identities=19% Similarity=0.268 Sum_probs=196.1
Q ss_pred ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCC
Q 024676 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSAD 82 (264)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D 82 (264)
..+.-.+.+.||..+|..|.|+| |.++|++++.|..+++||+.+|+....+. +|...+.+++|-||+..+++|+.|
T Consensus 257 ~~~kl~~tlvgh~~~V~yi~wSP---DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d 333 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYIMWSP---DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD 333 (519)
T ss_pred cceeeeeeeecccCceEEEEECC---CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC
Confidence 33666677889999999999996 88999999999999999999999877664 577899999999999999999999
Q ss_pred CeEEEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 83 FTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 83 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
+++.+||..... +..++ ....|.+++..++|+++++.+.|..|++++.++.... ..-....++.+.+.+.++..
T Consensus 334 r~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr--~lise~~~its~~iS~d~k~- 409 (519)
T KOG0293|consen 334 RTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR--GLISEEQPITSFSISKDGKL- 409 (519)
T ss_pred CcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh--ccccccCceeEEEEcCCCcE-
Confidence 999999986543 33333 2245899999999999999999999999998654321 12234567888888766554
Q ss_pred EEEeeCCCeEEEEECCCCceeEEecCCCC----EEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCC-Cceee
Q 024676 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP----VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESAS 234 (264)
Q Consensus 161 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~ 234 (264)
+.+.-.+.++++||++..+.++.+.++.. |.++.--.|..|++++ +|+.|+||+.++++++..+..+.. .+..+
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence 44555669999999997777666654322 3333223445788775 589999999999999988877654 55678
Q ss_pred EcCCCCCEEEEecCCCeEEEEEcC
Q 024676 235 LEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 235 ~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+.|.+.++||+||.||+||||-..
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCC
Confidence 889889999999999999999754
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-28 Score=206.99 Aligned_cols=240 Identities=20% Similarity=0.306 Sum_probs=205.6
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
.-+...|+.+.|+| +|++|++|..+|.+.|||....+.+.++.+ |...|-+++|. ...+.+|++|+.|..+|+.
T Consensus 214 ~~~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 214 SFGEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred ecCCCceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 33478999999996 999999999999999999999988899998 99999999998 6677899999999999998
Q ss_pred CCcEEEE-e-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee--CC
Q 024676 92 TGDEKHS-F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DS 167 (264)
Q Consensus 92 ~~~~~~~-~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d 167 (264)
..+.... + .|...|..+.|+++++++++|+.|+.+.+||....+ +...+..|.+.+..++|+|-...+||+|+ .|
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 8764433 3 388899999999999999999999999999995544 34556678999999999998888888654 78
Q ss_pred CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC---CCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEE
Q 024676 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD---GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF 243 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (264)
+.|++||..+++.+..+.....|.++.|++..+-++++. ...|.||+..+...+..+..+.. ....++.| +|..+
T Consensus 368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i 446 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETI 446 (484)
T ss_pred cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEE
Confidence 999999999999999999999999999999986655543 46899999999888877776544 44566777 59999
Q ss_pred EEecCCCeEEEEEcCc
Q 024676 244 IAGGEDMWVHVFDFHT 259 (264)
Q Consensus 244 ~~gs~d~~v~vwd~~~ 259 (264)
++|+.|.++++|++=.
T Consensus 447 ~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 447 VTGAADETLRFWNLFD 462 (484)
T ss_pred EEecccCcEEeccccC
Confidence 9999999999998643
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.8e-28 Score=192.41 Aligned_cols=247 Identities=17% Similarity=0.180 Sum_probs=196.9
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
.+..+-||++.|.++.|+. ||.+||||..+|.++||...++.....+..--+.+.=+.|+|....|+.|+.||.+-+
T Consensus 98 ~~~eltgHKDSVt~~~Fsh---dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSH---DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred ceeEecCCCCceEEEEEcc---CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence 4556679999999999995 9999999999999999999999877777544445555899999999999999999999
Q ss_pred EeCCCCc-EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC---------------------C
Q 024676 88 WDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------------------S 145 (264)
Q Consensus 88 wd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~---------------------~ 145 (264)
|.+.++. ++.-..|..++++=.|.|+|+.++++..|++|++||..++.......... .
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 9998854 44444588999999999999999999999999999998765432221000 0
Q ss_pred ----------CCe-------------------EEEEEecC--CCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEE
Q 024676 146 ----------GSI-------------------RTVAWLHS--DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAE 194 (264)
Q Consensus 146 ----------~~i-------------------~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~ 194 (264)
+++ .++.+.|. .-.+++.++-||+|.|||+.+.+..+..++..+|..+.
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~ 334 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK 334 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence 001 11111111 11367778889999999999998888888888999999
Q ss_pred EcCCCcEEEEeCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 195 VSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 195 ~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
|-+...++++..++.|+.||.|++.+..+|..+. .+..+++.| +.++++|+|.|++.+||++.
T Consensus 335 w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9985566677789999999999999999998765 455677777 58999999999999999863
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.9e-28 Score=198.05 Aligned_cols=243 Identities=18% Similarity=0.243 Sum_probs=198.5
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
.++.||...|+.+.|+| +...++++|.|..|+||....-........|.++|..+..+|.+.|++++|.|++.-+.|
T Consensus 255 ~~~~Gh~kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hhccCcceEEEEEEecc---chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 45589999999999997 677899999999999999877766667788999999999999999999999999999999
Q ss_pred CCCCcEEEEeecCC---eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676 90 ALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (264)
Q Consensus 90 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (264)
+.++..+....++. .+++.+|||+|-++.+|..|+.+++||+.++. ....++.|.++|..++|+. ++++++++.+
T Consensus 332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsE-NGY~Lat~ad 409 (506)
T KOG0289|consen 332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSE-NGYWLATAAD 409 (506)
T ss_pred ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEecc-CceEEEEEec
Confidence 99999888877642 47899999999999999999999999998766 3455667999999999875 5567778888
Q ss_pred CCeEEEEECCCCceeEEecC--CCCEEEEEEcCCCcEEEEe-CCCcEEEEECC--CceeeeEEecCCCCceeeEcCCCCC
Q 024676 167 SGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN--HFGLVKGYNMPCNTESASLEPKLGN 241 (264)
Q Consensus 167 d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (264)
|+.|++||+|+-+...++.. ..++.++.|.+.|+++..+ ++=+|++++.. .+.++..+..+........+.....
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq 489 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ 489 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence 89999999999887776643 3469999999999998765 33344444432 5666776665554444444444578
Q ss_pred EEEEecCCCeEEEEEc
Q 024676 242 IFIAGGEDMWVHVFDF 257 (264)
Q Consensus 242 ~~~~gs~d~~v~vwd~ 257 (264)
+++++|-|...+++-+
T Consensus 490 ~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 490 YLASTSMDAILRLYAL 505 (506)
T ss_pred EEeeccchhheEEeec
Confidence 9999999999988854
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=203.07 Aligned_cols=241 Identities=22% Similarity=0.274 Sum_probs=201.6
Q ss_pred eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
++..-++.|--++|..++|.+ ++.++++++.|+.+++|++...+...+|.||++.|.++.|......+++|+.|.++
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~---~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDS---DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred hhhhhhhhccCCCcceeeecC---CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchh
Confidence 444445567778899999995 89999999999999999999999999999999999999999888779999999999
Q ss_pred EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
|+||+....+..++-....++.++.+ ...+++|..|++||.||++++...... +..+.+.++..++++.. +.+++
T Consensus 286 K~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv--~~gg~vtSl~ls~~g~~-lLsss 360 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV--PLGGRVTSLDLSMDGLE-LLSSS 360 (459)
T ss_pred hhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe--ecCcceeeEeeccCCeE-Eeeec
Confidence 99999998888887777777777776 456889999999999999876643332 34568999998876555 44558
Q ss_pred CCCeEEEEECCCCceeEEecC-----CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC-CC--CceeeEc
Q 024676 166 DSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CN--TESASLE 236 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~-~~--~~~~~~~ 236 (264)
.|.++++.|+++.+..+.+.. .+.++.+.|||++.|++++ .|+.|+||++.++++.+....+ ++ +.++.|.
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 889999999999887776643 3468899999999998765 4899999999999988877653 33 5678888
Q ss_pred CCCCCEEEEecCCCeEEEE
Q 024676 237 PKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 237 ~~~~~~~~~gs~d~~v~vw 255 (264)
| .|+.+++++.++.+.+|
T Consensus 441 ~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 P-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred C-CCchhhcccCCcceEec
Confidence 8 58999999999999999
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=192.33 Aligned_cols=241 Identities=20% Similarity=0.377 Sum_probs=195.4
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC-
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA- 90 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~- 90 (264)
+.||++.|+.++-....| .+.++|+|.+.+||.+++|.++.++.||.+.|+++.|++.+.+++|+|.|++..||..
T Consensus 144 ~~GHkDGiW~Vaa~~tqp---i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQP---ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hcccccceeeehhhcCCc---ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 469999999998876544 8899999999999999999999999999999999999999999999999999999972
Q ss_pred -----CCC--------c----------------------EEE----Ee-ecCCeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676 91 -----LTG--------D----------------------EKH----SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (264)
Q Consensus 91 -----~~~--------~----------------------~~~----~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 130 (264)
... + .++ .+ .|...|.++.|-..++.++++++|++..+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 110 0 011 11 2556677888888899999999999999999
Q ss_pred CCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEecCC-CCEEEEEEcCCCcEEEEeCCC
Q 024676 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLETK-SPVTSAEVSRDGRYITTADGS 208 (264)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~ 208 (264)
+++++... .+..|..+++.++ .++.+.++++++.|.+.++||.+..- .+..++++ ..|.++.|..+.+.+.+++|+
T Consensus 301 VEtge~v~-~LtGHd~ELtHcs-tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr 378 (481)
T KOG0300|consen 301 VETGEVVN-ILTGHDSELTHCS-THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR 378 (481)
T ss_pred eccCceec-cccCcchhccccc-cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCc
Confidence 99988654 4445677777666 45567788899999999999998432 34455654 459999999999999889999
Q ss_pred cEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 209 SVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 209 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+|++||+++. .++.++......+.+..+. ++.+++.--.++.||+||+.
T Consensus 379 TvKvWdLrNMRsplATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eEEEeeeccccCcceeeecCCccceeEeec-CCceEEeccCCceEEEEecC
Confidence 9999999986 4577777766666666654 46688888899999999985
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-28 Score=188.17 Aligned_cols=242 Identities=17% Similarity=0.232 Sum_probs=189.3
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEe-----cCCCeEE
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-----SADFTAK 86 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-----s~D~~v~ 86 (264)
+.||++.|++|.-+. +.++|+|||+|.++++||+++|+.+++++ -..+|+.+.|+.++.+++.. +.-+.|-
T Consensus 48 y~GHtGavW~~Did~---~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 48 YDGHTGAVWCCDIDW---DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVS 123 (327)
T ss_pred ecCCCceEEEEEecC---CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence 479999999998875 66799999999999999999999998887 34689999999999876544 3346899
Q ss_pred EEeCCC-------CcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676 87 LWDALT-------GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 87 iwd~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (264)
++|+.. .++...+ .+.+.++...|+|.++++++|..|+.|..||++++.........|...|+.+++++ +.
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~ 202 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DR 202 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-Cc
Confidence 999873 3333333 36678888999999999999999999999999987655454455777899999876 55
Q ss_pred eEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC---CcE------------EEEECCCceeeeE
Q 024676 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG---SSV------------KFWDANHFGLVKG 223 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---~~i------------~iwd~~~~~~~~~ 223 (264)
.++++++.|.+-++||.++.+++.++....|+++.+++|...+++.+.+ ..| ++|++-..+.+..
T Consensus 203 T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr 282 (327)
T KOG0643|consen 203 TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR 282 (327)
T ss_pred ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence 6777888889999999999999999999999999999997766554322 122 2233222233444
Q ss_pred EecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 224 YNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
++.+.. .++.+++| +|..+++||+||+||+..++.
T Consensus 283 vkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 283 VKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccccccCcceeEECC-CCcccccCCCCceEEEEEecc
Confidence 444443 45677887 599999999999999997753
No 75
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.8e-27 Score=196.48 Aligned_cols=246 Identities=19% Similarity=0.308 Sum_probs=189.7
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce------------------------------------
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------------------------------ 53 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~------------------------------------ 53 (264)
.++-.|..+++-.+|+| .|.|+|+|...|.||||+....+.
T Consensus 53 ~iYtEH~~~vtVAkySP---sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSP---SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eeeccccceeEEEEeCC---CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 34568999999999997 799999999999999998653111
Q ss_pred ----------EEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEee
Q 024676 54 ----------IGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGG 121 (264)
Q Consensus 54 ----------~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~ 121 (264)
+..+.||...|+++.|.|..- +++|||.|.+|-+|+-...+-..++ +|.+.|+++.|+|+++++++++
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 234456777777777776554 3677777777777764443333343 3788999999999999999999
Q ss_pred CCCcEEEeeCCCCCCCCeE--eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC----EEEEEE
Q 024676 122 FEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP----VTSAEV 195 (264)
Q Consensus 122 ~d~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----v~~~~~ 195 (264)
.|+++.+||-.+++..... ...|++.|..++|+|++.. +++++.|.++||||+.+++++.++..... ...+.|
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 9999999999887754332 2368999999999987665 55667779999999999999988865332 333445
Q ss_pred cCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 196 SRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 196 s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
. +..+++.+.+|+|.+++....+.++.+..+.. ..++...+ ++.+|.+||.||.|.-|+..+|.
T Consensus 289 q-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 289 Q-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred e-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCcc
Confidence 5 66777778899999999999888877776544 45566666 57999999999999999987765
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=187.79 Aligned_cols=237 Identities=17% Similarity=0.279 Sum_probs=175.8
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEE-eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
-.+.|.+|+|+| ....+|+++|.|++||+|+++. |..+. ....|.++|.+++|+.||..+++|+.|+.+|+||+.+
T Consensus 26 P~DsIS~l~FSP--~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSP--QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEecc--ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 567899999999 3456888999999999999976 45443 3346999999999999999999999999999999999
Q ss_pred CcEEEEeecCCeEEEEEECCCC--CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 93 GDEKHSFEHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
++....-.|..+|..+.|-+.. .+|+|||+|+++|.||.+......... ....+.++.... .+++.+..++.|
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~~---pm~vVata~r~i 178 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVLY---PMAVVATAERHI 178 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhccC---ceeEEEecCCcE
Confidence 9888888899999999997755 489999999999999998655433332 233455544332 245555667999
Q ss_pred EEEECCCCceeEE-e--cCCCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCceeeeEEecCCC------------Cceee
Q 024676 171 RLWDARSGKIVQT-L--ETKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN------------TESAS 234 (264)
Q Consensus 171 ~iwd~~~~~~~~~-~--~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~------------~~~~~ 234 (264)
.+|.++.+..... + ..+..+.+++..+|.. +++++-.|.+-|..+......+.|.+.|+ .++++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9999987653321 1 2345688888888764 45555567766665554322333333322 24567
Q ss_pred EcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 235 LEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 235 ~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
|+|. -..|+|+|.||+..+||.+.
T Consensus 259 FhP~-hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 259 FHPV-HGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eecc-cceEEEecCCceEEEecchh
Confidence 8885 55699999999999999653
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=9.1e-28 Score=194.92 Aligned_cols=244 Identities=20% Similarity=0.256 Sum_probs=190.8
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--e--------EEeeeCCcCCEEEEEECCCC-cEEEEecC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--W--------IGTFEGHKGAVWSCCLDANA-LFSASGSA 81 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~--------~~~~~~H~~~V~~v~~~~~~-~~l~s~s~ 81 (264)
-.|.++|+.++|.|..| +.+|+.+..+.+.|||..+-. . -..+.||++.=++++|++.. -.+++++.
T Consensus 121 i~h~gEVnRaRymPQnp--~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNP--NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred ccCCccchhhhhCCCCC--cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 36999999999999655 588889999999999986532 1 12678999888889999754 56899999
Q ss_pred CCeEEEEeCCCCcE-------EEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCC-CCCCeEeccCCCCeEEE
Q 024676 82 DFTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTV 151 (264)
Q Consensus 82 D~~v~iwd~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~~ 151 (264)
|++|.+||+..... +..+ .|...|..++|+| +..++++++.|+.+.+||+++. .........|.++++++
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 99999999876432 2222 3888999999999 5567888999999999999963 22334455688999999
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEecC-CCCEEEEEEcCCCc-EEE-EeCCCcEEEEECCCceee------
Q 024676 152 AWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHFGLV------ 221 (264)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~-~~~v~~~~~s~~~~-~l~-~~~~~~i~iwd~~~~~~~------ 221 (264)
+|+|-+..++++++.|++|.+||+|.-+ ++++++. ...|..+.|||+.. .|+ ++.|+++.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 9999999999999999999999999854 6777765 45699999999874 444 456899999999753222
Q ss_pred --------eEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 222 --------KGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 222 --------~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
-.+..+ .....+.+.|+..-.+++.++|+.+.||.+.
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 122222 1234567788878899999999999999875
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=205.15 Aligned_cols=234 Identities=17% Similarity=0.310 Sum_probs=185.8
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC-----C
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-----G 93 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-----~ 93 (264)
+.+..|-| .++++++|...|.+.++|+.+...+.++++|.+.|++++.+||+..++|||.|++||+||..- +
T Consensus 415 ~l~~~Fvp---gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 415 ILASKFVP---GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred EEEEEecC---CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 33444443 445566666666666666666655666678999999999999999999999999999999531 1
Q ss_pred cE--------EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 94 DE--------KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 94 ~~--------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
.. .++++.+..|.++.++|++++|+.+-.|+++++|=+++-+.- -.+.+|.=++.++..+|+ ..++++|+
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf-lsLYGHkLPV~smDIS~D-SklivTgS 569 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF-LSLYGHKLPVLSMDISPD-SKLIVTGS 569 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee-eeecccccceeEEeccCC-cCeEEecc
Confidence 11 134456678999999999999999999999999988765432 344578889999998875 55788899
Q ss_pred CCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCE
Q 024676 166 DSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNI 242 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 242 (264)
.|+.|+||-+.=|.|..++- +...|.++.|-|... |++++-|+.|+-||..++++++.+..+. ...+.+..| .|.+
T Consensus 570 ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~ 648 (888)
T KOG0306|consen 570 ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSF 648 (888)
T ss_pred CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCe
Confidence 99999999999999987764 556799999999875 5677889999999999999999887654 455667777 4999
Q ss_pred EEEecCCCeEEEEEcC
Q 024676 243 FIAGGEDMWVHVFDFH 258 (264)
Q Consensus 243 ~~~gs~d~~v~vwd~~ 258 (264)
++++|.|..||+|..+
T Consensus 649 vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWERT 664 (888)
T ss_pred EEeccCCceeEeeecc
Confidence 9999999999999853
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.3e-27 Score=190.84 Aligned_cols=236 Identities=21% Similarity=0.308 Sum_probs=196.0
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-E
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-E 95 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-~ 95 (264)
..+.++.-.| ....+++|+.|..+.++|..+++.+.+|.||...|..+.++++...++++|.|..+++|...... +
T Consensus 220 pgi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 4566665554 34578999999999999999999999999999999999999999999999999999999976654 4
Q ss_pred EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676 96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (264)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd 174 (264)
.....|..+|+.+..+|++.++++++.|+++-..|++++........ .....+++.++ ++++.++.++..|+.|+|||
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEE
Confidence 44456999999999999999999999999999999988765433222 13345677765 45778899999999999999
Q ss_pred CCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC--CceeeEcCCCCCEEEEecCCC
Q 024676 175 ARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM 250 (264)
Q Consensus 175 ~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~d~ 250 (264)
+.++..+..|.. ..+|..++|+.||.++++ ++|+.|++||+|+.+..++|..... ..+..|.. .|.+++.+|+|-
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l 454 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDL 454 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeeccee
Confidence 999988877864 568999999999999876 4567799999999998999988654 56677776 589999999998
Q ss_pred eEEEEEc
Q 024676 251 WVHVFDF 257 (264)
Q Consensus 251 ~v~vwd~ 257 (264)
+|++++-
T Consensus 455 ~Vy~~~k 461 (506)
T KOG0289|consen 455 QVYICKK 461 (506)
T ss_pred EEEEEec
Confidence 8888763
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=204.83 Aligned_cols=241 Identities=23% Similarity=0.369 Sum_probs=191.5
Q ss_pred cCCCee---eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc------eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 15 HSRPVV---DLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 15 h~~~v~---~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~------~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
|-..|. ++..++ |.++||.||++||++++|+..... .++.++.|.+.|..+..-.+++.++|+|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da--~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDA--PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccC--CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 445555 455554 678899999999999999886532 366788899999999999999999999999999
Q ss_pred EEEeCCCCc--EEEEe-ecCCeEEEEEE-CCCCCEEEEeeCCCcEEEeeCCCCCC---------CCeEec-cCCCCeEEE
Q 024676 86 KLWDALTGD--EKHSF-EHKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDA---------PPREVG-NSSGSIRTV 151 (264)
Q Consensus 86 ~iwd~~~~~--~~~~~-~~~~~v~~~~~-~~~~~~l~s~~~d~~i~~~d~~~~~~---------~~~~~~-~~~~~i~~~ 151 (264)
|+|+...+. ++.++ .|.++|.++++ .++..++++|+.|+.|++||++++.. ...... ++..++.++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 999988763 44444 49999999999 88999999999999999999986521 111112 456678888
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCN 229 (264)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~ 229 (264)
+.++.+ .++++|+-.+-+++||.++++.+-.+.++ ..|..+..++||+. +++++|++|++||+...+++.+|..+..
T Consensus 178 A~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 178 AMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 877654 67778887799999999999877666554 56999999999965 5567799999999999999999988766
Q ss_pred Cc-eeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 230 TE-SASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 230 ~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
.. +....+ .=..|.+|+.|+.|+.=|+.+
T Consensus 257 ~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 257 GVWALQSSP-SFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ceEEEeeCC-CcceEEecCCCCcEEecccCC
Confidence 53 222333 346799999999999888765
No 81
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=178.45 Aligned_cols=237 Identities=19% Similarity=0.291 Sum_probs=184.6
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
.+.+.||-.+|..++-+ .|...+++|+.|+.+.+||+++|+.++.|+||.+.|+.++|..+...+++||.|.++|+|
T Consensus 52 iktYsghG~EVlD~~~s---~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~w 128 (307)
T KOG0316|consen 52 IKTYSGHGHEVLDAALS---SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLW 128 (307)
T ss_pred eeeecCCCceeeecccc---ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEE
Confidence 44567999999988766 478889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC--cEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 89 DALTG--DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 89 d~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
|..+. ++++.+. ....|.++... +..+++|+.||++|.||++.+.....- ...+|+++++++++...++++.
T Consensus 129 DCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 129 DCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred EcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeec
Confidence 98775 4566553 45567777654 567899999999999999987643222 3458999999988777777655
Q ss_pred CCCeEEEEECCCCceeEEecCCC-CEE--EEEEcCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCCC--ceeeEcCCC
Q 024676 166 DSGGVRLWDARSGKIVQTLETKS-PVT--SAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKL 239 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~~~~-~v~--~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~ 239 (264)
|+++++.|-.+|+.+..++.+. .-. ...++....+ +.+++|+.+.+||+.....+..+..+..+ ..+.++|..
T Consensus 204 -~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 204 -DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred -cceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 5999999999999888776542 222 2233333344 55677999999999999888888776554 355677766
Q ss_pred CCEEEEecCCCeEEEEE
Q 024676 240 GNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 240 ~~~~~~gs~d~~v~vwd 256 (264)
.+++++++ +.+..|-
T Consensus 283 ~~f~~A~~--~~~~~~~ 297 (307)
T KOG0316|consen 283 DDFITATG--HGDLFWY 297 (307)
T ss_pred cceeEecC--Cceecee
Confidence 66665554 3466774
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.9e-27 Score=182.53 Aligned_cols=236 Identities=18% Similarity=0.279 Sum_probs=178.5
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 95 (264)
++.|..|.|+| .++.|+.+|+||++++|++...++...|. |++++.+++|.+ ...+++|+-||.||++|+.++..
T Consensus 13 ~d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 56799999995 56678888999999999999887666666 899999999987 45678999999999999999998
Q ss_pred EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
...-.|..+++++.+.+....+++|++|++|++||.+..... .. ......|.++... +. .|+.+..+..|.+||+
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~-~~-~d~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV-GT-FDQGKKVYCMDVS--GN-RLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc-cc-cccCceEEEEecc--CC-EEEEeecCceEEEEEc
Confidence 888889999999999999899999999999999998752221 11 2234477777643 33 4555556699999999
Q ss_pred CCCceeE---EecCCCCEEEEEEcCCCc-EEEEeCCCc--EEEEECCCceeeeEEecCC------------CCceeeEcC
Q 024676 176 RSGKIVQ---TLETKSPVTSAEVSRDGR-YITTADGSS--VKFWDANHFGLVKGYNMPC------------NTESASLEP 237 (264)
Q Consensus 176 ~~~~~~~---~~~~~~~v~~~~~s~~~~-~l~~~~~~~--i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~ 237 (264)
|+...-. .-..+.++.++++-|++. |++++-+|. +.++|.+....-+.|.+.| +..++.|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 9876433 223456799999999764 555665665 4566665222223333332 234667777
Q ss_pred CCCCEEEEecCCCeEEEEEcCccee
Q 024676 238 KLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 238 ~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
. ...|+|||.||.|.+||..+.+.
T Consensus 243 ~-~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 243 I-HGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred c-cceEEecCCCceEEEccCcchhh
Confidence 5 66799999999999999876553
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-28 Score=184.36 Aligned_cols=212 Identities=21% Similarity=0.361 Sum_probs=176.0
Q ss_pred CcceeecceEe-eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEe
Q 024676 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASG 79 (264)
Q Consensus 2 ~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~ 79 (264)
|..+-+.|+.. +.|+.+|..|.|++ ..++.++++|.|++|++|+..-..-+.+|.||...|+...|+|. ...++++
T Consensus 89 d~~~~s~Pi~~~kEH~~EV~Svdwn~--~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 89 DLTMPSKPIHKFKEHKREVYSVDWNT--VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred ccCCCCcchhHHHhhhhheEEecccc--ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 34445556544 68999999999998 46778889999999999999888889999999999999999984 5788999
Q ss_pred cCCCeEEEEeCCC-CcEEEEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676 80 SADFTAKLWDALT-GDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (264)
Q Consensus 80 s~D~~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (264)
|.|+++++||+.. |+.+....|...+.++.|+. +...++||+.|+.||.||++.-+.+...+..|.-.|..+.|+|..
T Consensus 167 Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch
Confidence 9999999999876 45555555888999999988 667888999999999999998777777777888899999999998
Q ss_pred CeEEEEeeCCCeEEEEECCCCc-eeEEecCCCC-EEEEEEcCC-CcEE-EEeCCCcEEEEEC
Q 024676 158 QTILSSCTDSGGVRLWDARSGK-IVQTLETKSP-VTSAEVSRD-GRYI-TTADGSSVKFWDA 215 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~~-v~~~~~s~~-~~~l-~~~~~~~i~iwd~ 215 (264)
..++++++.|-++||||...+. ++....+++. +..+.||+- ...+ .++.|..+.+|+.
T Consensus 247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999999998654 4555565554 777888864 2344 4577999999983
No 84
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5.2e-29 Score=203.55 Aligned_cols=208 Identities=22% Similarity=0.367 Sum_probs=168.5
Q ss_pred ceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeCCC-CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEE
Q 024676 52 DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT-GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI 128 (264)
Q Consensus 52 ~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~ 128 (264)
+.+.++.||...|.++.|.| .+.++++++.|+.|+||++.. +.++++|. |..+|..++|++++..++|++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 34678899999999999999 778889999999999999987 77888885 8899999999999999999999999999
Q ss_pred eeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcE-EEEeC
Q 024676 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRY-ITTAD 206 (264)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~-l~~~~ 206 (264)
||+++|...... .....+.++.+.|++.+++++|+.|+.|+.||+|+++.++.+.. -..|+.+.|-++|+. +++++
T Consensus 285 wDtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 999998765443 34557888999998878888888889999999999998888854 467999999999965 55677
Q ss_pred CCcEEEEECCCceeee--------------------------------EEe-----------------cCCCCceeeEcC
Q 024676 207 GSSVKFWDANHFGLVK--------------------------------GYN-----------------MPCNTESASLEP 237 (264)
Q Consensus 207 ~~~i~iwd~~~~~~~~--------------------------------~~~-----------------~~~~~~~~~~~~ 237 (264)
++.++||+.+..-.++ .|. ...-.....|+|
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 8999999986422110 000 001112334555
Q ss_pred CCCCEEEEecCCCeEEEEEcCccee
Q 024676 238 KLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 238 ~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
+|++|++|..||.+.+||.++-+.
T Consensus 443 -DG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 443 -DGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred -CCCeEEeecCCccEEEeechhhhh
Confidence 699999999999999999987654
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.8e-27 Score=198.50 Aligned_cols=233 Identities=22% Similarity=0.351 Sum_probs=183.6
Q ss_pred eeccCCCeee-eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 12 CHGHSRPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 12 ~~~h~~~v~~-~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
+.+|.+.|.. +.|.+ .++-.|++|++|..+.+|...+..++++|.||+..|-+++...++. ++|||.|.++|+|..
T Consensus 53 ~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred cccCcceeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 4577787776 88876 3555689999999999999999999999999999999988877777 899999999999986
Q ss_pred CCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
...... ...|+.+|+.+..-|++ .++|||.|++||+|.-. .....+..|+.-++.++..++.. +++|+.||.|
T Consensus 130 ~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~I 202 (745)
T KOG0301|consen 130 GELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSI 202 (745)
T ss_pred hhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceE
Confidence 543211 33589999999998888 78899999999999853 23455566899999999987543 6678899999
Q ss_pred EEEECCCCceeEEecC-CCCEEEEEEcCC-CcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC
Q 024676 171 RLWDARSGKIVQTLET-KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~-~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 248 (264)
++|++ +|+++..+.. .+-+.++...++ +..+++++|++++||+.. ++++.+..|....-.+..-..|+ +++|++
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEecc
Confidence 99999 6777776654 456999995555 455667889999999977 77888887764333322222365 788889
Q ss_pred CCeEEEEEcC
Q 024676 249 DMWVHVFDFH 258 (264)
Q Consensus 249 d~~v~vwd~~ 258 (264)
||.||||-.+
T Consensus 279 DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 DGRVRVFTVD 288 (745)
T ss_pred CceEEEEEec
Confidence 9999999755
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=186.54 Aligned_cols=246 Identities=17% Similarity=0.268 Sum_probs=199.3
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE----Ee------------e--eCCcCCEEEEEEC
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GT------------F--EGHKGAVWSCCLD 70 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~----~~------------~--~~H~~~V~~v~~~ 70 (264)
+.+...|..++.+|+++| +..+..+++.|++|.=|++.+|.-. .. . ++|...|.+++++
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 455678999999999986 8889999999999999998887522 11 1 2788899999999
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeE
Q 024676 71 ANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR 149 (264)
Q Consensus 71 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~ 149 (264)
+|+++++||+.|..|.||+..+.+.+..+. |..+|.+++|-..-..|++++.|+.+++|+++.... ...+..|++.|.
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~ 290 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVL 290 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCcccee
Confidence 999999999999999999999999888864 888999999988888899999999999999975443 344556788888
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676 150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN 229 (264)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~ 229 (264)
.+..+..+. .++++..|+++++|++.....+--..+...+.+++|-.+..|++++++|.|-+|++-+.+++.+++.+.+
T Consensus 291 ~IdaL~reR-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 291 GIDALSRER-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred eechhcccc-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 888776544 5666778899999999655444333445579999999888888889999999999999888877764322
Q ss_pred -------------CceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 230 -------------TESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 230 -------------~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
..+++..+ +.++|++||-+|.||+|-+..|
T Consensus 370 v~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCC
Confidence 12344455 6899999999999999988776
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.9e-27 Score=184.70 Aligned_cols=239 Identities=16% Similarity=0.227 Sum_probs=201.7
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
-|..+|.|+.|+- |..+||+|+.||.|++|.+.+|.+++.|. .|+..|.++.|+.|+..+.++|-|.++||--+.+
T Consensus 261 Mmd~aVlci~FSR---DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 261 MMDDAVLCISFSR---DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred ecccceEEEeecc---cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 3678899999994 77899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
|+++..++ |.+.|+...|.++|..+++++.|+++++|+..+.+...... .+..-+++.+-..|.+...++.|...++|
T Consensus 338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 99888876 88899999999999999999999999999998887755443 23445788888888888888888888999
Q ss_pred EEEECCCCceeEEecC----CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE
Q 024676 171 RLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (264)
.|-++. |+.++++.. .....++.+||-|.++-+ ++|+.+.-+....+..-++...++.-.....+.+-...+++
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhh
Confidence 999986 667777742 245667789999998755 77899999999999888888776653332233334678999
Q ss_pred ecCCCeEEEEE
Q 024676 246 GGEDMWVHVFD 256 (264)
Q Consensus 246 gs~d~~v~vwd 256 (264)
.++|+.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999994
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-24 Score=170.10 Aligned_cols=237 Identities=16% Similarity=0.208 Sum_probs=180.0
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeC--CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~--d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
-++..+..+.|-. ..+.++.+|. |.+||.-++.+++.++.|.||+..|.+++.+|-+..++|+|.|++||+||++
T Consensus 54 skkyG~~~~~Fth---~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 54 SKKYGVDLACFTH---HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR 130 (311)
T ss_pred cccccccEEEEec---CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec
Confidence 3444677777764 2234455555 8899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC-CCCCeEecc---CCCCeEEEEEecCCCeEEEEeeCC
Q 024676 92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPREVGN---SSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
..++.-.+... .-..++|+|+|-++|++.....|++||++.- +.+...+.- -..+...+.|+++|..++++ ...
T Consensus 131 ~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~ 208 (311)
T KOG1446|consen 131 VKKCQGLLNLS-GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNA 208 (311)
T ss_pred CCCCceEEecC-CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCC
Confidence 77655544322 2234689999999888887779999999865 233333322 35678889999988887776 455
Q ss_pred CeEEEEECCCCceeEEecCCC----CEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCC--CCceeeEcCCCC
Q 024676 168 GGVRLWDARSGKIVQTLETKS----PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC--NTESASLEPKLG 240 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~ 240 (264)
+.+.+.|.-+|..+.++.... -..+.+|+||++|+.++. |++|.+|+++++..+..+..+. ......|.|+ -
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~-~ 287 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR-Y 287 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc-e
Confidence 899999999999888775432 235788999999987765 6999999999999998887742 2334556664 4
Q ss_pred CEEEEecCCCeEEEEEcC
Q 024676 241 NIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 241 ~~~~~gs~d~~v~vwd~~ 258 (264)
.+|++++ ..+-+|=.+
T Consensus 288 ~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 288 AMFVSAS--SNLVFWLPD 303 (311)
T ss_pred eeeeecC--ceEEEEecc
Confidence 5666665 558888443
No 89
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.2e-26 Score=178.42 Aligned_cols=247 Identities=22% Similarity=0.308 Sum_probs=193.5
Q ss_pred ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEe------CCC------------------------------
Q 024676 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GET------------------------------ 50 (264)
Q Consensus 7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~------~~~------------------------------ 50 (264)
++...+.||.+.|++|+|+| .+.+++++|.|++..||. +.+
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred cceeeecccccceeeEEecc---ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 34556689999999999996 889999999999999985 111
Q ss_pred C----ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCc
Q 024676 51 G----DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKI 125 (264)
Q Consensus 51 ~----~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~ 125 (264)
+ .++..|.||.+.|.++.|-..++.++|+|.|.+..+||+++++++..+. |.+..+.|+-+|..+++++.+.|.+
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT 337 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce
Confidence 0 0134578999999999999999999999999999999999999888774 8888999999999999999999999
Q ss_pred EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEE
Q 024676 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT 204 (264)
Q Consensus 126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~ 204 (264)
.++||.+..-.....+-.|...+.++.|.-++ -++++++|.+||+||++.- .++.++...++++.++++..+..|+.
T Consensus 338 FRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 338 FRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred eEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe
Confidence 99999974333333445678889998887544 4678899999999999874 47888888899999999999888877
Q ss_pred e-CCCcEEEEECCCceeeeEEe----cCC-CCceeeEc--CCCCCEEEEecCCCeEEEEEcCc
Q 024676 205 A-DGSSVKFWDANHFGLVKGYN----MPC-NTESASLE--PKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 205 ~-~~~~i~iwd~~~~~~~~~~~----~~~-~~~~~~~~--~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
- +++.|++||+...+.-+.-. .+. ...+.++. ++ -.-|.++|-|+.+.-|+..+
T Consensus 416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc-ccccccccccceeeeeEecc
Confidence 5 45799999997655432211 111 12233332 22 23477889999999998754
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=198.77 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=164.1
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDA 90 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~ 90 (264)
+.||++.|..|.|+ ..++|+++|+|++||+|.+...++++.|. |.+.|.||+|+| |..|++|||-|+.||||++
T Consensus 365 f~GHt~DILDlSWS----Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 365 FKGHTADILDLSWS----KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred hhccchhheecccc----cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeec
Confidence 36999999999999 56799999999999999999999999998 999999999998 6789999999999999999
Q ss_pred CCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccC------CCCeEEEEEecCCCeEEEE
Q 024676 91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNS------SGSIRTVAWLHSDQTILSS 163 (264)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~------~~~i~~~~~~~~~~~~~~~ 163 (264)
...+...-......|++++|.|+|+..+.|+.+|.+++|+...-+.... .+..+ ...|+.+.++|.+...+++
T Consensus 440 ~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 440 SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 8887766666778999999999999999999999999999865433221 11111 2369999999876654444
Q ss_pred eeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676 164 CTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITT-ADGSSVKFWDA 215 (264)
Q Consensus 164 ~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~-~~~~~i~iwd~ 215 (264)
.+.|..|||+|.+..+.+..+++. ..-....|+.||++|++ ++|..|.+|+.
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 466799999999888877777642 23456789999999876 45789999996
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=8.9e-26 Score=186.20 Aligned_cols=248 Identities=19% Similarity=0.245 Sum_probs=179.2
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce----EEeee-CCcCCEEEEEECCCCcEEEEecCCCe
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW----IGTFE-GHKGAVWSCCLDANALFSASGSADFT 84 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~----~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~ 84 (264)
+.+.+|+..|.++++.| .|-.|++||.|.+|++||...... .+.+. ....+|++++|++.+..++..+..-.
T Consensus 161 i~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34578999999999996 888999999999999999875421 12222 23458999999999988777777778
Q ss_pred EEEEeCCCCcEEEE-------------eecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCCeEec-----cCC
Q 024676 85 AKLWDALTGDEKHS-------------FEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVG-----NSS 145 (264)
Q Consensus 85 v~iwd~~~~~~~~~-------------~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----~~~ 145 (264)
.+|+|-...+.... ..|...+++.+|+|. ...+++++.|+++|+||++........+. ...
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999544332221 126667999999994 56789999999999999986554333322 223
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEe-c---CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc
Q 024676 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTL-E---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF 218 (264)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~-~---~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~ 218 (264)
-++..++|++++.. ++++..||.|.+||.++... ...+ . ....|+++.||++|++|++ +.|+++++||+++.
T Consensus 318 v~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 45788899987665 56666779999999865432 2222 2 2346999999999998876 67899999999986
Q ss_pred -eeeeEEec---CCCCceeeEcCCCCCEEEEecC------CCeEEEEEcCccee
Q 024676 219 -GLVKGYNM---PCNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQ 262 (264)
Q Consensus 219 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~------d~~v~vwd~~~g~~ 262 (264)
+++..+.. .......+|+| ..+++++|.+ -+++.+||..+-+.
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred ccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceee
Confidence 44544432 23334566777 4778888764 56788998776554
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.7e-25 Score=172.45 Aligned_cols=235 Identities=19% Similarity=0.233 Sum_probs=179.8
Q ss_pred eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc--EEEEecCCC
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADF 83 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~--~l~s~s~D~ 83 (264)
...|+....|.+||.++.|+. ||..+++|+.|+++++||+.+++ +..+..|.++|..+.|-+... .|+|||.|+
T Consensus 62 ~~~~ka~~~~~~PvL~v~Wsd---dgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK 137 (347)
T KOG0647|consen 62 QLVPKAQQSHDGPVLDVCWSD---DGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK 137 (347)
T ss_pred cccchhhhccCCCeEEEEEcc---CCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEeccccc
Confidence 345677789999999999995 89999999999999999999995 557888999999999977554 799999999
Q ss_pred eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccCCCCeEEEEEecCCCeEEE
Q 024676 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILS 162 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~ 162 (264)
++|+||+++..++.++...+.+.+... ....++.+..++.|.+|+|+.+..... ...+.+-.+++++.+.+.+.+++
T Consensus 138 TlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 138 TLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred ceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe
Confidence 999999999999999888877776543 345778888999999999976543322 22334556888888877766655
Q ss_pred EeeCCCeEEEEECCCCce--eEEecC----------CCCEEEEEEcCCC-cEEEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676 163 SCTDSGGVRLWDARSGKI--VQTLET----------KSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCN 229 (264)
Q Consensus 163 ~~~~d~~v~iwd~~~~~~--~~~~~~----------~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~ 229 (264)
+ +-.|.+.|-.+..+.. -.+++. -..|++++|+|.. .+++.++||++.+||......++++.....
T Consensus 216 G-siEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 216 G-SIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred e-eecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 4 5559999887766422 122221 1358999999985 556678899999999988877888765444
Q ss_pred Cc-eeeEcCCCCCEEEEecC
Q 024676 230 TE-SASLEPKLGNIFIAGGE 248 (264)
Q Consensus 230 ~~-~~~~~~~~~~~~~~gs~ 248 (264)
+. ..+|.. .|.+|+.+-.
T Consensus 295 pItcc~fn~-~G~ifaYA~g 313 (347)
T KOG0647|consen 295 PITCCSFNR-NGSIFAYALG 313 (347)
T ss_pred ccceeEecC-CCCEEEEEee
Confidence 44 445554 5888886543
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=7.3e-24 Score=174.37 Aligned_cols=243 Identities=16% Similarity=0.150 Sum_probs=180.4
Q ss_pred eccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDA 90 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~ 90 (264)
.+|.. +..+.|+| +|+.| ++++.++.+++||..+++.+..+..+.. +..++|+|++..+ ++++.|+.+++||+
T Consensus 28 ~~~~~-~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 28 PVGQR-PRGITLSK---DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred ECCCC-CCceEECC---CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 34443 56789986 77765 6778899999999999988777765544 4678999999866 45667899999999
Q ss_pred CCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCC-cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
.++..+..+++...+..++++|++++++++..++ .+.+||.++.+...... .......++|++++..+++++..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCE
Confidence 9887777776555678899999999999888764 56778987654322221 22345667888888777777666799
Q ss_pred EEEEECCCCceeEEecCC--------CCEEEEEEcCCCcEEE--EeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCC
Q 024676 170 VRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL 239 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~--~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (264)
|++||+++++.+..+... .....+.++|+++++. .+.++.+.+||+++++.+........+....+.|+
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~- 259 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPD- 259 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCC-
Confidence 999999999876654321 1234688999998743 34456899999998887766655555667788875
Q ss_pred CCEEEEe-cCCCeEEEEEcCcceee
Q 024676 240 GNIFIAG-GEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 240 ~~~~~~g-s~d~~v~vwd~~~g~~i 263 (264)
+++|+++ +.++.|++||+.+++.+
T Consensus 260 g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 260 EKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEE
Confidence 6666664 67999999999998864
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.7e-25 Score=182.11 Aligned_cols=231 Identities=21% Similarity=0.328 Sum_probs=184.9
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
+|-+.|.+++-+| ||+|||+|+.|..+.||+..+++.++.|.+|++.|.+++|-.....++++|.|++|++|++...
T Consensus 200 ~h~keil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 200 GHVKEILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred cccceeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 8999999998874 9999999999999999999999999999999999999999888888899999999999999876
Q ss_pred cEEE-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676 94 DEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (264)
Q Consensus 94 ~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i 172 (264)
..+. .|.|+..|..+....-++.+.+|+.|+++++|++... ....+..+.+.+-|++|.++. .+++|+++|.|.+
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIAL 352 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEE
Confidence 5443 4579999998877777777777789999999999532 233444567899999998543 4667889999999
Q ss_pred EECCCCceeEEecC-------------CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCc----eeeeEEecCCCCceee
Q 024676 173 WDARSGKIVQTLET-------------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF----GLVKGYNMPCNTESAS 234 (264)
Q Consensus 173 wd~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~----~~~~~~~~~~~~~~~~ 234 (264)
|++.+-+++..... +..|++++..|+..++++++ ++.|++|-+..+ +++..+.+....+++.
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEE
Confidence 99998887765421 12688999999998887765 799999998765 4455555566667788
Q ss_pred EcCCCCC-EEEEecCCCeE
Q 024676 235 LEPKLGN-IFIAGGEDMWV 252 (264)
Q Consensus 235 ~~~~~~~-~~~~gs~d~~v 252 (264)
|+++ |+ +++..|....+
T Consensus 433 f~~s-gk~ivagiGkEhRl 450 (479)
T KOG0299|consen 433 FSNS-GKRIVAGIGKEHRL 450 (479)
T ss_pred EccC-CCEEEEeccccccc
Confidence 7775 55 66655554444
No 95
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.1e-24 Score=168.85 Aligned_cols=203 Identities=23% Similarity=0.340 Sum_probs=165.1
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc------eE---------EeeeCCcCCEEEEEECC-CCcEEE
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WI---------GTFEGHKGAVWSCCLDA-NALFSA 77 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~------~~---------~~~~~H~~~V~~v~~~~-~~~~l~ 77 (264)
-|-+.|+.|.-.| ..|+|+++|++||.+-+||++.-. ++ ..-.+|+-.|.++.|-| |.-.+.
T Consensus 41 ~HgGsvNsL~id~--tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 41 PHGGSVNSLQIDL--TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred cCCCccceeeecc--ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 3889999998887 468999999999999999986432 11 11146888999999977 556778
Q ss_pred EecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC---CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe
Q 024676 78 SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL 154 (264)
Q Consensus 78 s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 154 (264)
|+|-|+++|+||+++.+....|.-+..|..-+++|- ..++++|..|-.+++-|+.++.... .+..|.+.|..+.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH-~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH-TLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee-eeccccCceEEEEec
Confidence 999999999999999998889988899999999993 4466677778899999999887654 445688999999999
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCC-ceeEEec---------------CCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCC
Q 024676 155 HSDQTILSSCTDSGGVRLWDARSG-KIVQTLE---------------TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANH 217 (264)
Q Consensus 155 ~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~---------------~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~ 217 (264)
|..++++++++.||.||+||+|.. -|...+. +...++.++|+.++.+++ .+.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 999999999999999999999865 2333221 224689999999998765 56788999999987
Q ss_pred ce
Q 024676 218 FG 219 (264)
Q Consensus 218 ~~ 219 (264)
++
T Consensus 278 G~ 279 (397)
T KOG4283|consen 278 GR 279 (397)
T ss_pred Cc
Confidence 64
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-26 Score=198.12 Aligned_cols=240 Identities=17% Similarity=0.258 Sum_probs=191.2
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC---CceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCC
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~---~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~ 93 (264)
....|+|+. -+.++|||++..|.|.+||+.. .+.+..|..|+-.|.++.|++.. .+++|||+||+||+||++..
T Consensus 89 S~~DVkW~~--~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQ--LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhccccc--chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 344678873 4778999999999999999987 45667889999999999999866 56899999999999999888
Q ss_pred cEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 94 DEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
....++. ....|+.|.|+| .+..++++...|.+++||++.+..-...+..|.+++.++.|.| ++.++++|+.|++|+
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVK 245 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEE
Confidence 7666654 456799999999 5677888888899999999987665566678999999999998 677889999999999
Q ss_pred EEECCCCc--eeEEecCCCCEEEEEEcCCCcE-EEEe---CCCcEEEEECCC-ceeeeEEecCCCCc-eeeEcCCCCCEE
Q 024676 172 LWDARSGK--IVQTLETKSPVTSAEVSRDGRY-ITTA---DGSSVKFWDANH-FGLVKGYNMPCNTE-SASLEPKLGNIF 243 (264)
Q Consensus 172 iwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~-l~~~---~~~~i~iwd~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 243 (264)
|||..+.+ .+++++.-.++..+.|-|...+ |+++ .|..|++||++. |-+-.+|.-+.... .+.|..-+...|
T Consensus 246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred EEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence 99998665 4667777889999999998754 4443 467899999964 44445554443332 345554456789
Q ss_pred EEecCCCeEEEEEcCcc
Q 024676 244 IAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 244 ~~gs~d~~v~vwd~~~g 260 (264)
.++|.|++|....++++
T Consensus 326 ~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKNA 342 (839)
T ss_pred EeecCccHHHHhhhhcc
Confidence 99999999887766544
No 97
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=181.11 Aligned_cols=231 Identities=26% Similarity=0.386 Sum_probs=178.9
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCce---E----------------Ee--eeCCcCCEEEEEECCCC-cEEEEecCCCeEEE
Q 024676 30 DGFFLVSASKDSSPMLRNGETGDW---I----------------GT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKL 87 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~~---~----------------~~--~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~i 87 (264)
-|+|+|.|..|..|.|||+.-... . +. -++|++.|.+++|...- ..|||||.|++|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 478999999999999998753210 0 11 23699999999988654 56799999999999
Q ss_pred EeCCCCcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 88 WDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 88 wd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
||+.++++..++. |.+.|.++.|+| ...+|++|++|+++++.|.+......... ...+.+..++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEec
Confidence 9999999999988 788999999999 56889999999999999998543322222 24678999999998888888889
Q ss_pred CCCeEEEEECCCC-ceeEEecC-CCCEEEEEEcCCCc-EEE-EeCCCcEEEEECCCcee--eeE--EecCCCCceeeEcC
Q 024676 166 DSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHFGL--VKG--YNMPCNTESASLEP 237 (264)
Q Consensus 166 ~d~~v~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~-~l~-~~~~~~i~iwd~~~~~~--~~~--~~~~~~~~~~~~~~ 237 (264)
+||+|+-+|+|.. +++.+++. ..+|.++.+++.-. +++ ++.++.+++|++..-+. ++. +.+.- ..+.++.|
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r-l~c~~~~~ 428 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR-LHCFALDP 428 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc-eeecccCC
Confidence 9999999999975 78888864 46799999987653 344 45689999999865332 322 22221 23445556
Q ss_pred CCCCEEEEecCCCeEEEEEcCccee
Q 024676 238 KLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 238 ~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
.....++.||+.+.+++||..++..
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CcceEEEecCccceEEEeecccChh
Confidence 5667889999999999999887654
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.4e-25 Score=188.24 Aligned_cols=235 Identities=19% Similarity=0.349 Sum_probs=191.6
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE--eeeCCcCCEEE-EEECC-CCcEEEEecCCCeE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWS-CCLDA-NALFSASGSADFTA 85 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~--~~~~H~~~V~~-v~~~~-~~~~l~s~s~D~~v 85 (264)
..++||+..|.+++.. ++-.++++|+|+++++|+...++++. .+.+|.+.|.. +++.+ ++-.+++|+.|.++
T Consensus 8 ~~l~gH~~DVr~v~~~----~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVT----DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred EEeccCccchheeEec----CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4568999999999876 45578999999999999988777654 57889998877 88874 55568999999999
Q ss_pred EEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 86 ~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
.+|...+..+..++ .|+..|.++....++. ++|||+|.+.++|-.. +.. .....|+.+|+.+..+|++ .++++
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~-~~l~gH~asVWAv~~l~e~--~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV-YSLQGHTASVWAVASLPEN--TYVTG 157 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh-cccCCcchheeeeeecCCC--cEEec
Confidence 99999999888876 4899999998877776 8999999999999764 332 2345688999999999876 56677
Q ss_pred eCCCeEEEEECCCCceeEEecCCC-CEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCE
Q 024676 165 TDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNI 242 (264)
Q Consensus 165 ~~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 242 (264)
+.|.+||+|.- ++.++++..|. -|..+++-+++.|++++.|+.|++|++ +++++..+..+.. ..++.... .+..
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~ 233 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGL 233 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCe
Confidence 78899999976 66777887665 489999999999999999999999999 6777766665544 33555455 3678
Q ss_pred EEEecCCCeEEEEEcC
Q 024676 243 FIAGGEDMWVHVFDFH 258 (264)
Q Consensus 243 ~~~gs~d~~v~vwd~~ 258 (264)
++++|+|+++++|+..
T Consensus 234 Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEecCCceEEEeecC
Confidence 9999999999999864
No 99
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3e-24 Score=163.73 Aligned_cols=247 Identities=17% Similarity=0.222 Sum_probs=201.5
Q ss_pred eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
+.+-...+||.+.|-++.|+|..|| .+++++.|+.|++||..+++++.......+.+ .+.|+|++.+++.++.|-.|
T Consensus 54 ~~~~~~~~gh~~svdql~w~~~~~d--~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~i 130 (313)
T KOG1407|consen 54 FRKELVYRGHTDSVDQLCWDPKHPD--LFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRI 130 (313)
T ss_pred hhhhhcccCCCcchhhheeCCCCCc--ceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccE
Confidence 3344456799999999999997765 78999999999999999999988887655554 48899999999999999999
Q ss_pred EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
.+.|..+.+.....+....++-++|+-++.+++....-|++.|.....-+.. +.+..|.....|+.+.|.+. ++++|+
T Consensus 131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-~si~AH~snCicI~f~p~Gr-yfA~Gs 208 (313)
T KOG1407|consen 131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-QSIKAHPSNCICIEFDPDGR-YFATGS 208 (313)
T ss_pred EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc-cccccCCcceEEEEECCCCc-eEeecc
Confidence 9999999888888888888999999987777777777799999887654433 44556777888888888766 566777
Q ss_pred CCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEE
Q 024676 166 DSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (264)
.|..+.+||+...-|++.+. ...||..+.||-||++|+++ +|..|-|-+++++..+..++......+.+++|+ ..+|
T Consensus 209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk-~~LL 287 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK-RPLL 287 (313)
T ss_pred ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC-Ccee
Confidence 88999999999888888774 56789999999999999875 578899999999998888877667778899996 5667
Q ss_pred EEecCC---------CeEEEEEcC
Q 024676 244 IAGGED---------MWVHVFDFH 258 (264)
Q Consensus 244 ~~gs~d---------~~v~vwd~~ 258 (264)
+.+..| +.|++|-+.
T Consensus 288 AyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 288 AYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEEecCCCCccccccceeEEecCC
Confidence 766554 566666543
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=8.6e-26 Score=176.08 Aligned_cols=207 Identities=21% Similarity=0.371 Sum_probs=164.3
Q ss_pred EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC------------CC------cEEEE-eecCCeEEEEEECCCCC
Q 024676 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL------------TG------DEKHS-FEHKHIVRACAFSEDTH 115 (264)
Q Consensus 55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~------------~~------~~~~~-~~~~~~v~~~~~~~~~~ 115 (264)
..+..|++++++.+|++||.+++|||.|-.|||.|++ .+ ..+++ +.|.++|+.+.|+|-..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 4567799999999999999999999999999999975 11 12333 46889999999999999
Q ss_pred EEEEeeCCCcEEEeeCCCCCCCCeE-eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe----cCCCCE
Q 024676 116 LLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPV 190 (264)
Q Consensus 116 ~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v 190 (264)
+|++++.|+++++||..+...+... .....-++.++.|.|.+++++ .+.+.-++++||++|-+|...- ++...|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999998755432111 112344788999888776554 5677789999999999987544 234679
Q ss_pred EEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 191 TSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 191 ~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
+++.+++.|++.++ +-||.|+|||--.++|++++.-. ....++.|.. +++++++.|.|..|++|.+.+|.++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceE
Confidence 99999999987554 56999999999999999988542 2334445554 6999999999999999999999875
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=183.77 Aligned_cols=250 Identities=20% Similarity=0.279 Sum_probs=182.2
Q ss_pred CCcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE------------eeeCCcCCEEEEE
Q 024676 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG------------TFEGHKGAVWSCC 68 (264)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~------------~~~~H~~~V~~v~ 68 (264)
||-.+-.+--+.....+.|+.+.|+| .|.++++.+..-+++++|-...+... .-+||.+.+.+.+
T Consensus 199 Mdas~~~fr~l~P~E~h~i~sl~ys~---Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~ 275 (641)
T KOG0772|consen 199 MDASMRSFRQLQPCETHQINSLQYSV---TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC 275 (641)
T ss_pred ccccchhhhccCcccccccceeeecC---CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc
Confidence 34444343333345777899999997 56677777777788898865433322 2268999999999
Q ss_pred ECCCCc-EEEEecCCCeEEEEeCCCCc-EEEEeec------CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC--C
Q 024676 69 LDANAL-FSASGSADFTAKLWDALTGD-EKHSFEH------KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--P 138 (264)
Q Consensus 69 ~~~~~~-~l~s~s~D~~v~iwd~~~~~-~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~ 138 (264)
|+|+.+ .++|+|.|+++||||+.... .+..+.+ .-+++.|+|+|+++++++|+.||.|.+|+.++.... .
T Consensus 276 whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~ 355 (641)
T KOG0772|consen 276 WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM 355 (641)
T ss_pred cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce
Confidence 999764 57899999999999997653 3344432 236889999999999999999999999997543322 2
Q ss_pred eEeccCCC--CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEec---CCCCEEEEEEcCCCcEEEEeC------
Q 024676 139 REVGNSSG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE---TKSPVTSAEVSRDGRYITTAD------ 206 (264)
Q Consensus 139 ~~~~~~~~--~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~---~~~~v~~~~~s~~~~~l~~~~------ 206 (264)
.....|.. .|+++.|++++.. |++-+.|+++|+||++..+ ++.... ...+-..++|||+.++|+++.
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred EeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence 22234544 8999999987665 4455666899999999764 454432 234567889999999987652
Q ss_pred -CCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676 207 -GSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 207 -~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vw 255 (264)
.+.+.+||-.+++.+..+.+.. .+....|+|+.++++ +|+.||.++||
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsgdG~~~vy 484 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSGDGTAHVY 484 (641)
T ss_pred CCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecCCCceEEE
Confidence 2469999999999998888753 455678999877654 55668999987
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4e-25 Score=179.62 Aligned_cols=205 Identities=20% Similarity=0.285 Sum_probs=167.0
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-------eEEeeeCCcCCEEEEEECCCC-cEEEEecC
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDANA-LFSASGSA 81 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-------~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~ 81 (264)
+.+.||+++=.+|.|++..+ -+|++|+.|+.+.+||+.... ....|.+|++.|..++|++.. ..+++++.
T Consensus 171 l~L~gH~~eg~glsWn~~~~--g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQE--GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred eEEEeecccccccccccccc--eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 47789999877899998653 478999999999999986542 245789999999999999855 56799999
Q ss_pred CCeEEEEeCCC--CcEEE-EeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676 82 DFTAKLWDALT--GDEKH-SFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (264)
Q Consensus 82 D~~v~iwd~~~--~~~~~-~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (264)
|+.+.|||+++ .++.. ...|..+|++++|+| ++.+|||||.|+++.+||+|.-......+..|...+..+.|+|..
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 99999999995 33222 335889999999999 667888899999999999998877777888899999999999999
Q ss_pred CeEEEEeeCCCeEEEEECCCCceeE------------Ee---cCCCCEEEEEEcCCCcEEE--EeCCCcEEEEECC
Q 024676 158 QTILSSCTDSGGVRLWDARSGKIVQ------------TL---ETKSPVTSAEVSRDGRYIT--TADGSSVKFWDAN 216 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~~~~~~------------~~---~~~~~v~~~~~s~~~~~l~--~~~~~~i~iwd~~ 216 (264)
..++++++.|+.+.+||+..-...+ .| .+...|+.+.|+|+..... .++|+.++||...
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999999999999996522111 12 2235689999999986643 3568899999974
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=5.2e-24 Score=189.05 Aligned_cols=250 Identities=17% Similarity=0.295 Sum_probs=187.4
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEe--CCCCcEEEeCCC------------CceEEeeeCCcCCEEEEEECCCC
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGET------------GDWIGTFEGHKGAVWSCCLDANA 73 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s--~d~~v~i~~~~~------------~~~~~~~~~H~~~V~~v~~~~~~ 73 (264)
+|.-..-+...|-.|.-+| ||..++||+ .|+.++||+... .+.+.+...|.+.|.|+.|++||
T Consensus 5 kp~wv~H~~~~IfSIdv~p---dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 5 KPTWVNHNEKSIFSIDVHP---DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG 81 (942)
T ss_pred cccccccCCeeEEEEEecC---CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC
Confidence 3433333555677887775 999999999 999999997643 12345667899999999999999
Q ss_pred cEEEEecCCCeEEEEeCCC----------Cc--------EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC
Q 024676 74 LFSASGSADFTAKLWDALT----------GD--------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP 134 (264)
Q Consensus 74 ~~l~s~s~D~~v~iwd~~~----------~~--------~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~ 134 (264)
++||+||.|+.|.||+... |. ....+ .|...|..++|+|++.+|++++.|++|-+||..+.
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence 9999999999999999762 00 12222 38889999999999999999999999999999887
Q ss_pred CCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-------CCCEEEEEEcCCCcEEEEeC-
Q 024676 135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDGRYITTAD- 206 (264)
Q Consensus 135 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~- 206 (264)
+ ....+..|.+.+-.+.|-|-++ ++++-++|++|+||...+....+.+.. ..-...+.|||||++|++..
T Consensus 162 ~-~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 E-LLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred e-eeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 4 3455567888999999988765 577778899999999777555554432 23478899999999998753
Q ss_pred --C--CcEEEEECCCceeeeEEecCC-CCceeeEcCC------C------CC----EEEEecCCCeEEEEEcCccee
Q 024676 207 --G--SSVKFWDANHFGLVKGYNMPC-NTESASLEPK------L------GN----IFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 207 --~--~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~------~------~~----~~~~gs~d~~v~vwd~~~g~~ 262 (264)
+ ..+.|.+=.+++.-..+-.|. ......|.|. . +. .+|+||.|+++-||....-.+
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 2 368888777776555554433 3334444322 0 11 678999999999999765544
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.4e-23 Score=154.24 Aligned_cols=237 Identities=19% Similarity=0.312 Sum_probs=180.5
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC------CCc-------eE--EeeeCCcCCEEEEEECCCCcEEEE
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE------TGD-------WI--GTFEGHKGAVWSCCLDANALFSAS 78 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~------~~~-------~~--~~~~~H~~~V~~v~~~~~~~~l~s 78 (264)
..+-.|.+++|+| .|.+-+.||..++.||.-.. .+. .+ +.-+-|++.|++.+|+|+|.+++|
T Consensus 30 ~dsqairav~fhp---~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP---AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred cchhheeeEEecC---CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 3666899999997 77788999999999995321 110 01 112348999999999999999999
Q ss_pred ecCCCeEEEEeCCCCcE------EEEeecCCeEEEEEECC----CCCEEEEeeC-CCcEEEeeCCCCCCCCeEeccCCCC
Q 024676 79 GSADFTAKLWDALTGDE------KHSFEHKHIVRACAFSE----DTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGS 147 (264)
Q Consensus 79 ~s~D~~v~iwd~~~~~~------~~~~~~~~~v~~~~~~~----~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~ 147 (264)
||.|++||+-..+...+ +..--|...|+.++|-. .+.+|++++. |..|.+-|-.+++. ......|.+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtgh 185 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGH 185 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCccc
Confidence 99999999976654322 22223778899999843 3567777654 56677667665553 4555678888
Q ss_pred eEEE-EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--------CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCC
Q 024676 148 IRTV-AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANH 217 (264)
Q Consensus 148 i~~~-~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~ 217 (264)
|..+ .| ++..+++++.|.+||+||+|-..++..+.. .+.|..+++.|.|++++++. |....+||++.
T Consensus 186 ilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 186 ILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred EEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 7664 33 356888999999999999999988876632 25689999999999999875 78899999999
Q ss_pred ceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 218 FGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 218 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
++.++.|.-+. ...+..|+| ..+|++++|.|..|++=|+.
T Consensus 263 ~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecc
Confidence 99999986544 456667776 68999999999999999873
No 105
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=5.3e-24 Score=173.40 Aligned_cols=255 Identities=20% Similarity=0.212 Sum_probs=198.2
Q ss_pred ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECCCC-cEEEEecC
Q 024676 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSA 81 (264)
Q Consensus 7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~ 81 (264)
..+.+.+-|.+.|.+++|+|.. ..+++|+|+.-|+|-+||..+. +-+..|..|+++|.++.|+|.+ ..+++.|.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~-~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTE-NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred eecceeEecccceEEEEecccC-cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 3455667899999999999953 4579999999999999999532 3456788899999999999865 67889999
Q ss_pred CCeEEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676 82 DFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 82 D~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (264)
||++|.-|++.+.....+. .......+.++.+...++.+..=|...+||++...........|...|..++++|...
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 9999999998764222222 1224566777777777777776679999999887654444445677999999999999
Q ss_pred eEEEEeeCCCeEEEEECCCCc-----eeEEecCCCCEEEEEEcCCC-cEEEEeCCCcEEEEECC----CceeeeEEecCC
Q 024676 159 TILSSCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN----HFGLVKGYNMPC 228 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~----~~~~~~~~~~~~ 228 (264)
+++++++-|++++|||+|.-. .+..+.+..+|+++.|||.+ .+++++.|..|+|||.. ..+...++.+++
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 999999999999999998632 25667788889999999986 66667889999999994 445555555543
Q ss_pred CC------ceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 229 NT------ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 229 ~~------~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
.. ..+.|.|+ ..+++.|-.-+.|.|+|-+.|+++
T Consensus 416 ~t~RwlT~fKA~W~P~-~~li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPD-YNLIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred cccccccchhheeCCC-ccEEEEeccCcceeEEcCCCCEEe
Confidence 32 35678884 678899999999999998877754
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.1e-24 Score=163.10 Aligned_cols=241 Identities=20% Similarity=0.242 Sum_probs=180.3
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK 86 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~V~~v~~~~--~~~~l~s~s~D~~v~ 86 (264)
.-.|.+-|..+... =.|+.|||+|.|++|+|+.++.+ .++.+|.||++||+.++|.+ -|.+|||+|.||.|.
T Consensus 7 dt~H~D~IHda~lD---yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLD---YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhHhhhh---hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 35688888764333 25899999999999999988764 46789999999999999976 689999999999999
Q ss_pred EEeCCCCcEEEEe---ecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCC-CC-CCeEeccCCCCeEEEEEecC---
Q 024676 87 LWDALTGDEKHSF---EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRP-DA-PPREVGNSSGSIRTVAWLHS--- 156 (264)
Q Consensus 87 iwd~~~~~~~~~~---~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~-~~-~~~~~~~~~~~i~~~~~~~~--- 156 (264)
||.-.+++=.... .|...|++++|.|. +-.|+.++.||.|.+.+.+.. .. .......|...+++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 9998887422222 37788999999884 567888899999999987654 22 22344567778899999875
Q ss_pred C----------CeEEEEeeCCCeEEEEECCCCce--eEEecC-CCCEEEEEEcCCC----cEEE-EeCCCcEEEEECCCc
Q 024676 157 D----------QTILSSCTDSGGVRLWDARSGKI--VQTLET-KSPVTSAEVSRDG----RYIT-TADGSSVKFWDANHF 218 (264)
Q Consensus 157 ~----------~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~-~~~v~~~~~s~~~----~~l~-~~~~~~i~iwd~~~~ 218 (264)
+ ..-+++++-|..|+||+...++- ...++. ...|+.+++.|.- ..++ ++.|+++-||-.+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 13477777789999999988742 223444 4568999999974 2344 467999999987632
Q ss_pred -e-----eeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 219 -G-----LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 219 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+ +++. +++..-+.+++. .|.+|+.++.|..|.+|..+
T Consensus 244 ~e~wk~tll~~--f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 YEPWKKTLLEE--FPDVVWRVSWSL-SGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCccccccccc--CCcceEEEEEec-cccEEEEecCCcEEEEEEeC
Confidence 1 2222 344455667776 48899999999999999643
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2e-22 Score=165.87 Aligned_cols=228 Identities=17% Similarity=0.172 Sum_probs=167.6
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEE
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF 110 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~ 110 (264)
+.+++++.|+.+++||..+++.+..+.+|.. +..++|++++..+ ++++.|+.+++||..+++....+.....+..+++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 5788999999999999999998888887654 6789999999876 6778899999999998887766654444677889
Q ss_pred CCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC
Q 024676 111 SEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP 189 (264)
Q Consensus 111 ~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 189 (264)
+|+++.++++ +.++.+++||+.+.+... .+ ........++++|++..++++..+...+.+||.++++.+........
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLA-EI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR 158 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEe-Ee-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence 9999877654 568999999997654322 22 12234567888887766555444334678889999887665544445
Q ss_pred EEEEEEcCCCcEEE-Ee-CCCcEEEEECCCceeeeEEecCC--------CCceeeEcCCCCCE-EEEecCCCeEEEEEcC
Q 024676 190 VTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNI-FIAGGEDMWVHVFDFH 258 (264)
Q Consensus 190 v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~gs~d~~v~vwd~~ 258 (264)
+..+.++|+++++. ++ .++.|++||+++++.++.+.... .+..+.++++ +++ +++.+.++.+.+||..
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-g~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD-GKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC-CCEEEEEcCCCCeEEEEECC
Confidence 67889999998764 44 37899999999988777664321 1234566765 554 5555667789999998
Q ss_pred cceee
Q 024676 259 TGEQI 263 (264)
Q Consensus 259 ~g~~i 263 (264)
+++.+
T Consensus 238 ~~~~~ 242 (300)
T TIGR03866 238 TYEVL 242 (300)
T ss_pred CCcEE
Confidence 87754
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.2e-23 Score=186.71 Aligned_cols=245 Identities=17% Similarity=0.242 Sum_probs=184.8
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-------C-----------ceEEeeeCCcCCEEEEEECCCCc
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------G-----------DWIGTFEGHKGAVWSCCLDANAL 74 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-------~-----------~~~~~~~~H~~~V~~v~~~~~~~ 74 (264)
..|..+|.|++|+| ||++||+||.|+.|.||.... | +.+..+.+|.+.|..++|+|++.
T Consensus 66 ~~h~~sv~CVR~S~---dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSP---DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ccccCceeEEEECC---CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 57999999999996 999999999999999997662 1 13567899999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-----CCCCe
Q 024676 75 FSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-----SSGSI 148 (264)
Q Consensus 75 ~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~i 148 (264)
+++++|-|++|.|||..+.+.+..++ |...|-++.|+|-|+++++-+.|+++++|.+.+-......-.+ .....
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 99999999999999999997777665 8899999999999999999999999999996542221111111 11234
Q ss_pred EEEEEecCCCeEEEEeeCC---CeEEEEECCCCceeEEe-cCCCCEEEEEEcC--------CC-------c--EEEE-eC
Q 024676 149 RTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTL-ETKSPVTSAEVSR--------DG-------R--YITT-AD 206 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~--------~~-------~--~l~~-~~ 206 (264)
.-+.|+|++.++.+.-+-+ -.+.|.+-.+-+.-..+ .|+.++.++.|+| || . .+++ +.
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 5578999887766543322 25777776655544444 4667899999986 11 1 2333 46
Q ss_pred CCcEEEEECCCceeeeEE-ec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 207 GSSVKFWDANHFGLVKGY-NM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 207 ~~~i~iwd~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
|+.|-||....-+++-.. ++ ...+.-.+|+| +|..|.++|.||+|.+..+...|
T Consensus 303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 899999998655543222 12 23445678888 48999999999999999987543
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.7e-23 Score=154.11 Aligned_cols=197 Identities=20% Similarity=0.313 Sum_probs=151.9
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEE--eCCCCce--------------------------------------
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETGDW-------------------------------------- 53 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~--~~~~~~~-------------------------------------- 53 (264)
-|.+.|.|.+|+| +|.+|++||.|++|++- +.++...
T Consensus 87 hhkgsiyc~~ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 87 HHKGSIYCTAWSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccCccEEEEEecC---ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 5899999999996 99999999999999883 3322111
Q ss_pred ------------EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--------cCCeEEEEEECCC
Q 024676 54 ------------IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--------HKHIVRACAFSED 113 (264)
Q Consensus 54 ------------~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~ 113 (264)
...++||++-|.++ ++-++-.+++||+|++||+||+.-..++.++. ....|..++..|.
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 12234566666544 23346788999999999999998887777664 2357999999999
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc--ee---EEecCCC
Q 024676 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IV---QTLETKS 188 (264)
Q Consensus 114 ~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~---~~~~~~~ 188 (264)
+++|++|..|...-+||++.++.. +.+.+|...+.++.|+| +.+++.+|+.|..|++-|+...- ++ ..-++..
T Consensus 243 grll~sg~~dssc~lydirg~r~i-q~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMI-QRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD 320 (350)
T ss_pred cceeeeccCCCceEEEEeeCCcee-eeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence 999999999999999999977654 55567889999999886 66788899999999999997532 12 1224566
Q ss_pred CEEEEEEcCCC-cEEEEeCCCcEEEEECC
Q 024676 189 PVTSAEVSRDG-RYITTADGSSVKFWDAN 216 (264)
Q Consensus 189 ~v~~~~~s~~~-~~l~~~~~~~i~iwd~~ 216 (264)
.+..+.|+|.. .|++++.|+++.+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 78888999987 46666778999999753
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-24 Score=162.10 Aligned_cols=205 Identities=23% Similarity=0.375 Sum_probs=163.4
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE--eeeCCcCCEEEEEECCC--CcEEEEecCCCeEE
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDAN--ALFSASGSADFTAK 86 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~--~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~ 86 (264)
-+.||++||+.++|... .-|..||++|.||.|+||.-+.|++.+ .+..|++.|++++|.|. |..|+++|.||.|.
T Consensus 51 ~L~Gh~GPVwqv~wahP-k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHP-KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred EecCCCCCeeEEeeccc-ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 34799999999999853 378999999999999999999987643 45689999999999885 56789999999999
Q ss_pred EEeCCCC-c---EEEEeecCCeEEEEEECCC---C-----------CEEEEeeCCCcEEEeeCCCCCCCCeE-eccCCCC
Q 024676 87 LWDALTG-D---EKHSFEHKHIVRACAFSED---T-----------HLLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGS 147 (264)
Q Consensus 87 iwd~~~~-~---~~~~~~~~~~v~~~~~~~~---~-----------~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~ 147 (264)
|.+..+. . .+....|+-.|++++|.|. + +.|++|+.|+.+++|+.+.++..... +..|.+-
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 9987654 1 2233458888999999996 4 67999999999999998876554433 5678899
Q ss_pred eEEEEEecCC---CeEEEEeeCCCeEEEEECCCCce--eEEe--cCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECC
Q 024676 148 IRTVAWLHSD---QTILSSCTDSGGVRLWDARSGKI--VQTL--ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216 (264)
Q Consensus 148 i~~~~~~~~~---~~~~~~~~~d~~v~iwd~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~ 216 (264)
++.++|.|.- ...+++|+.||+|.||..+.... ..++ ....++..+.||+.|.+|+.+ .|+.+.+|--.
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9999999865 35799999999999998763211 1122 234568999999999998765 46889999754
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.3e-23 Score=159.97 Aligned_cols=243 Identities=21% Similarity=0.273 Sum_probs=178.4
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce------------------------------------E
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------------------------------I 54 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~------------------------------------~ 54 (264)
+++||.+.|.+++|+. ||++|+|++.|++||+|++.+.+. +
T Consensus 81 ~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 3479999999999994 999999999999999998753110 0
Q ss_pred Ee----------------------e-eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec-CCeEEEEEE
Q 024676 55 GT----------------------F-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAF 110 (264)
Q Consensus 55 ~~----------------------~-~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~v~~~~~ 110 (264)
.- | +-|+-.|..+.....+.+++|+|.|..|.||+.. |+.+..+.. ....+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 00 0 1134455556666778999999999999999998 666666542 334567889
Q ss_pred CCCCCEEEEeeCCCcEEEeeC---CCCCC----CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc----
Q 024676 111 SEDTHLLLTGGFEKILRIFDL---NRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---- 179 (264)
Q Consensus 111 ~~~~~~l~s~~~d~~i~~~d~---~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~---- 179 (264)
+|+|+++++++..--+++|++ +.++. ...++..|+..+...+|+++.. .+++.+.||++||||..-.-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCC
Confidence 999999999999999999985 22221 1235567888999999987654 56677889999999975321
Q ss_pred ---eeEEec-----CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec--CCCCceeeEcCCCCCEEEEecCC
Q 024676 180 ---IVQTLE-----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIFIAGGED 249 (264)
Q Consensus 180 ---~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gs~d 249 (264)
.+.... .......+.++|+|+.|+.+.+..++++..+.++....+.- ...+.++++.+ +|++++++| |
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-d 393 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-D 393 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-c
Confidence 111110 11233479999999999999999999999998776555532 33456778887 589999987 7
Q ss_pred CeEEEEEcCcc
Q 024676 250 MWVHVFDFHTG 260 (264)
Q Consensus 250 ~~v~vwd~~~g 260 (264)
+.+++..-..|
T Consensus 394 r~vrv~~ntpg 404 (420)
T KOG2096|consen 394 RYVRVIRNTPG 404 (420)
T ss_pred eeeeeecCCCc
Confidence 89999874444
No 112
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=6.2e-23 Score=176.08 Aligned_cols=243 Identities=20% Similarity=0.247 Sum_probs=194.8
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
..||-..|..+.++. +...+++ ++.+++++|+..++++++++.. +.+.+..|-|.+.++++|...|.+.++|+.
T Consensus 369 ~~GHR~dVRsl~vS~---d~~~~~S-ga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSS---DSILLAS-GAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eccchhheeEEEeec---Cceeeee-cCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 469999999999984 4444444 4456899999999999999964 378899999999999999999999999999
Q ss_pred CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC----CCC-------CeEeccCCCCeEEEEEecCCCe
Q 024676 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DAP-------PREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~----~~~-------~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
+...+.+. .|...+..++.+|+++.+++||.|.++++||..-. ... ..........+.++.++|++..
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 88755554 48999999999999999999999999999996311 101 1112233567899999987664
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCC-ceeeEc
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLE 236 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~ 236 (264)
++.+--|.+|+||=+.+.+...++ .+.=||.|+..|||+++++++ .|..|++|=+.-+.|.+.+..+... .+..|.
T Consensus 523 -LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 523 -LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred -EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 555566799999999998865544 566789999999999988765 5899999999999999988776554 566777
Q ss_pred CCCCCEEEEecCCCeEEEEEcCccee
Q 024676 237 PKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 237 ~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
| ..++|.++|.|+.|+.||-..-++
T Consensus 602 P-~~~~FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 602 P-KTHLFFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred c-cceeEEEecCcceEEeechhhhhh
Confidence 7 489999999999999998655444
No 113
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=9.7e-23 Score=162.59 Aligned_cols=241 Identities=18% Similarity=0.254 Sum_probs=178.5
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC----------------CceEEeeeCCcCCEEEEEECCCC-cE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------------GDWIGTFEGHKGAVWSCCLDANA-LF 75 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~----------------~~~~~~~~~H~~~V~~v~~~~~~-~~ 75 (264)
-+|.+.++.++-++.. +.-++++=+..|.|.||++.. .+.+.++.+|++.=++++|+|-. -.
T Consensus 148 i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred cccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 4789999998888743 445677778889999998742 23467889999999999999932 23
Q ss_pred EEEecCCCeEEEEeCCCCcE----EEEeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCC-CeEeccCCCCeE
Q 024676 76 SASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIR 149 (264)
Q Consensus 76 l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~i~ 149 (264)
++||..-+.|++|...++.= .....|+..|..++|+|. ...++|||-|+.|+|||++.+... ......|.+-|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 67887788999999887641 122348889999999994 567889999999999999987433 344467888999
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCC---ceeEEec-CCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCcee---
Q 024676 150 TVAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGL--- 220 (264)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~-~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~--- 220 (264)
.+.|+-.-. +|++|++||+++|||+|.. +++..++ +..+|+++.|+|.. .+++++.|..|.|||+....-
T Consensus 307 VISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 307 VISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 999986554 8999999999999999864 4566675 56789999999965 456677889999999853110
Q ss_pred -----eeE-----------EecCCCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 221 -----VKG-----------YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 221 -----~~~-----------~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
... ++.........|++....++++-+.|| +.||.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 111 111111223456666677899988888 45554
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-22 Score=175.42 Aligned_cols=238 Identities=16% Similarity=0.229 Sum_probs=191.4
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
+|+...+.|.|.| +|.+|++++.|+.|++|+.... +.-.++..|...|.+++-. +.+|++|+.+++|..+...+
T Consensus 11 aht~G~t~i~~d~---~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDP---DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcC---CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 7999999999996 8999999999999999987665 3334454477778776654 45889999999999999988
Q ss_pred CcEEEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 93 GDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 93 ~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
++.-.. -+.+-+++.++++-+|+.++.||.|-.|++.++....... ....|.+++.++.+.|.+. ++++.+-||.|+
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~-~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~ 163 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK-VLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQ 163 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe-eecccCCceeeeeEcCCCC-EEEEEecCceEE
Confidence 764322 2346689999999999999999999999999987665433 3446899999999988655 666667789999
Q ss_pred EEECCCCceeEEecC---------CCCEEEEEEcCC-CcEEEEeCCCcEEEEECCCceeeeEEec---CCCCceeeEcCC
Q 024676 172 LWDARSGKIVQTLET---------KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNM---PCNTESASLEPK 238 (264)
Q Consensus 172 iwd~~~~~~~~~~~~---------~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~ 238 (264)
+||+.++.+...+.. ...+..++|+|+ |++++.+.++.|++|+...++....+.. ........|.|+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 999999887665532 234677899999 5777778899999999999988777753 233556778886
Q ss_pred CCCEEEEecCCCeEEEEEcCc
Q 024676 239 LGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 239 ~~~~~~~gs~d~~v~vwd~~~ 259 (264)
|.|+|+++.|+.|.|||+++
T Consensus 244 -G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 244 -GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -CcEEeeeccCCcEEEEeccc
Confidence 99999999999999999985
No 115
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=4.5e-23 Score=164.48 Aligned_cols=170 Identities=23% Similarity=0.382 Sum_probs=143.3
Q ss_pred eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE---EeeeCCcCCEEEEEECCCCc-EEEEecC
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDANAL-FSASGSA 81 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~---~~~~~H~~~V~~v~~~~~~~-~l~s~s~ 81 (264)
+...+...||...=.+|.|+|.. .|. |++|..-+.|++|...+|.+. ..|.+|+..|..++|+|... .|+|||.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~-~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIK-TGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cCceEEecccCccceeeeccccc-ccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 33445557899999999999954 454 578888899999999999874 46788999999999999764 5799999
Q ss_pred CCeEEEEeCCCC---cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC--CCCCeEeccCCCCeEEEEEecC
Q 024676 82 DFTAKLWDALTG---DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHS 156 (264)
Q Consensus 82 D~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~ 156 (264)
|++|||||++++ .++.+..|..-|+.+.|+....+|++|+.||++++||++.- ..+...+..|+.+|+++.|.|.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 999999999998 35556678899999999998889999999999999999853 2334566779999999999998
Q ss_pred CCeEEEEeeCCCeEEEEECCC
Q 024676 157 DQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~ 177 (264)
+...+++++.|.+|.|||+..
T Consensus 359 e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCceEEeccCCCcEEEEEeec
Confidence 888888888889999999864
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.5e-24 Score=185.18 Aligned_cols=231 Identities=20% Similarity=0.309 Sum_probs=188.5
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
.|+..|.++.-. ..++.+++|+.|..+-+|....-..+..|.+|+.+|.++.|+....++++|+.||+||+||++.+
T Consensus 26 ~hsaav~~lk~~---~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 26 AHSAAVGCLKIR---KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhceeeee---ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 578888888764 36789999999999999988765555568999999999999999999999999999999999988
Q ss_pred cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676 94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (264)
Q Consensus 94 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i 172 (264)
...+++ .|...+..+.|+|.+.+.++|+.|..+++||++......... .|...+..+.+.|+|. +++.+.+|.+++|
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki 180 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGR-WVASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCc-eeeccCCcceeee
Confidence 766665 577889999999999999999999999999998655544444 4777888888888665 5666778899999
Q ss_pred EECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCC
Q 024676 173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGED 249 (264)
Q Consensus 173 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d 249 (264)
||+..|+.+..|+ +...+.++.++|...+++. +.|+++++||+++++.+....- ...+.+..|.+ .+..+.+|-++
T Consensus 181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 9999999999997 5678999999998877765 4589999999999987765533 33445556666 47777777654
Q ss_pred C
Q 024676 250 M 250 (264)
Q Consensus 250 ~ 250 (264)
.
T Consensus 260 s 260 (825)
T KOG0267|consen 260 S 260 (825)
T ss_pred h
Confidence 4
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.7e-22 Score=154.93 Aligned_cols=227 Identities=18% Similarity=0.187 Sum_probs=172.2
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
..|..|+.+++|.+ -..+++|+.||.|+.+|++++.. ..+..|..+|+++.+.+-...+++||.|++|++||..+
T Consensus 51 ~~~~~plL~c~F~d----~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD----ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred eecCCceeeeeccC----CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 46999999999995 45789999999999999998864 35667999999999998888899999999999999987
Q ss_pred CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
....-.+...+.|.++.. .+..|+.|+.|..+.+||++.-....+ .-...+-.+.+++..|..+-++++ +-||.|.
T Consensus 126 ~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s-SieGRVa 202 (323)
T KOG1036|consen 126 KVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS-SIEGRVA 202 (323)
T ss_pred cccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE-eecceEE
Confidence 666666666777877644 577899999999999999987654432 222344568999999977666665 4558887
Q ss_pred EEECCCCc----eeEEecC----------CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEec-CCCCceeeE
Q 024676 172 LWDARSGK----IVQTLET----------KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNM-PCNTESASL 235 (264)
Q Consensus 172 iwd~~~~~----~~~~~~~----------~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 235 (264)
+=.+...+ ....++. -.||++++|+|-...| +++.||.|.+||+.+.+.++.+.. ...+.+++|
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF 282 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence 75444331 1122222 2489999999986555 456789999999998877766644 344566777
Q ss_pred cCCCCCEEEEecC
Q 024676 236 EPKLGNIFIAGGE 248 (264)
Q Consensus 236 ~~~~~~~~~~gs~ 248 (264)
+. +|..||.|+.
T Consensus 283 s~-dG~~LAia~s 294 (323)
T KOG1036|consen 283 SM-DGSLLAIASS 294 (323)
T ss_pred cc-CCCeEEEEec
Confidence 76 5888998875
No 118
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=1.2e-22 Score=162.87 Aligned_cols=204 Identities=23% Similarity=0.344 Sum_probs=165.8
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-------ceEEeeeCCcCCEEEEEECCCC-cEEEEecCCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGSADF 83 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-------~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~ 83 (264)
..||+++|..++|+|. +.+.+|+||.|-+|.||.+..+ +.+..+.||...|.-++|+|.- ..|+|++.|.
T Consensus 77 v~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ccCccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 4689999999999994 5679999999999999987553 3467889999999999999965 5578999999
Q ss_pred eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-CeEEEEEecCCCeEEE
Q 024676 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQTILS 162 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~ 162 (264)
+|+|||+.+++.+.++.|..-|.++.|+.+|.++++++.|+.||+||.++++...... .|.| ...-+.|..++. +++
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~-i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK-IFT 232 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-eee
Confidence 9999999999999999999999999999999999999999999999999887765553 3444 333445665555 676
Q ss_pred Eee---CCCeEEEEECCCCc---eeEEecCCCCEEEEEEcCCCcE--EEEeCCCcEEEEECCCce
Q 024676 163 SCT---DSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRY--ITTADGSSVKFWDANHFG 219 (264)
Q Consensus 163 ~~~---~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~i~iwd~~~~~ 219 (264)
+|. .++++-+||....+ .+..+..++.|..-.+.||..+ |++-.|+.||+|.+.+-.
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 654 56889999976543 3566677778888889999764 344457899999987654
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2e-24 Score=184.44 Aligned_cols=191 Identities=22% Similarity=0.407 Sum_probs=168.0
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
+.+|+.+|-+|.|++ +..+|++|++||+|++||++..+.++++-||...+.+|.|+|-+.|+++||.|..+++||+.
T Consensus 66 ~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 66 LTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred eeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 469999999999996 77899999999999999999999889999999999999999999999999999999999999
Q ss_pred CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
...+...+. |...|..+.++|+|+++++++.|.++++||+..++.. ..+..|.+.+..+. +++.+.++++++.|++|
T Consensus 143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv 220 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTV 220 (825)
T ss_pred ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-cccccccccccccc-cCchhhhhccCCCCcee
Confidence 766666665 7778999999999999999999999999999877654 44456778888888 45677889999999999
Q ss_pred EEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeCC
Q 024676 171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADG 207 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 207 (264)
++||+++.+.+...... ..|.+..|+|++..+.++..
T Consensus 221 ~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 221 RFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 99999999988776543 46999999999988877754
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=157.78 Aligned_cols=238 Identities=15% Similarity=0.230 Sum_probs=175.3
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 98 (264)
-.++.|++ -|.+||.|..||.+-|||..+...-+.|.+|--+|.+++|++||.+|+|+|+|-.+++||+..|.++..
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 45799996 899999999999999999999887788999999999999999999999999999999999999999999
Q ss_pred eecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCCeEEEE---EecCCCeEEEEeeCCCeEEEE
Q 024676 99 FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVA---WLHSDQTILSSCTDSGGVRLW 173 (264)
Q Consensus 99 ~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~~~~~~~~d~~v~iw 173 (264)
+....+|..+.|+| +.+.++++-.+....+-++..+. ...+. ...+.....+ ++...+.++.+|...|.+.++
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 99999999999999 44455555556555566654321 11111 1111111111 233344566677778999999
Q ss_pred ECCCCceeEEecCC--CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc-------eee--eEEec---CCCCceeeEcCC
Q 024676 174 DARSGKIVQTLETK--SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF-------GLV--KGYNM---PCNTESASLEPK 238 (264)
Q Consensus 174 d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~-------~~~--~~~~~---~~~~~~~~~~~~ 238 (264)
|..+.+++..+... ..|..+.++..|++++. ..|+.||.|+++.. ++. +.++- .......+|+.
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~- 259 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG- 259 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-
Confidence 99999999887643 46889999999988765 67899999998632 111 22210 11223455665
Q ss_pred CCCEEEEecC-CCeEEEEEcCccee
Q 024676 239 LGNIFIAGGE-DMWVHVFDFHTGEQ 262 (264)
Q Consensus 239 ~~~~~~~gs~-d~~v~vwd~~~g~~ 262 (264)
+|.|+++|+. -..+|+|....|..
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred CccEEEeccccceeEEEEecCCcce
Confidence 6887776654 56799999877754
No 121
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.5e-22 Score=168.17 Aligned_cols=228 Identities=16% Similarity=0.195 Sum_probs=186.1
Q ss_pred CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEE
Q 024676 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRAC 108 (264)
Q Consensus 31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~ 108 (264)
.+.|+.|. ...+.+|+..+++.....+.++..|.++.|+++|.+|+.|-.+|+|.|||..+.+....+. |...|.++
T Consensus 188 ~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 188 ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence 44666654 4468999999998766666668999999999999999999999999999998877666654 67789999
Q ss_pred EECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-cCC
Q 024676 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETK 187 (264)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~ 187 (264)
+|. +..+.+|+.|+.|..+|++..+........|..++..+.|++++ .++++++.|+.+.|||....+++..+ ++.
T Consensus 267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~ 343 (484)
T KOG0305|consen 267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHT 343 (484)
T ss_pred ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccc
Confidence 998 66789999999999999988765544455688899999999855 57888889999999999777766655 566
Q ss_pred CCEEEEEEcCCC-cEEEEe---CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe-cCCCeEEEEEcCccee
Q 024676 188 SPVTSAEVSRDG-RYITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG-GEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 188 ~~v~~~~~s~~~-~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-s~d~~v~vwd~~~g~~ 262 (264)
..|..++|+|=. .+||++ .|+.|++||..++..++.......+.++.+.+...+++.+- =.+..|.||+.-+.+.
T Consensus 344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 789999999954 455543 26899999999999999888888888999999877777764 3477899999866554
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=153.00 Aligned_cols=200 Identities=19% Similarity=0.291 Sum_probs=157.5
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
.-|.+.|++|.|.|... -++|++|+.||.|.+|+..+=+++.++++|++.|..++.+|.+++.++.+.|+++++||+-.
T Consensus 80 l~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcc-hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 56999999999997442 24899999999999999988888999999999999999999999999999999999999999
Q ss_pred CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676 93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (264)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i 172 (264)
|+.-......+.-..+.|+|.|.+++.++. +.|-+|.++.... ..++.. ...+.++.|. ++..+++|.+|+.|++
T Consensus 159 Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v-~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 159 GRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASV-FREIEN-PKRILCATFL--DGSELLVGGDNEWISL 233 (362)
T ss_pred CccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhH-hhhhhc-cccceeeeec--CCceEEEecCCceEEE
Confidence 887666666666666999999998876665 4578898875432 222221 2346666555 3445667778899999
Q ss_pred EECCCCceeEEec-CCCCEEEEEE--cCCCcEEEE-eCCCcEEEEECCCc
Q 024676 173 WDARSGKIVQTLE-TKSPVTSAEV--SRDGRYITT-ADGSSVKFWDANHF 218 (264)
Q Consensus 173 wd~~~~~~~~~~~-~~~~v~~~~~--s~~~~~l~~-~~~~~i~iwd~~~~ 218 (264)
||-....+...+. +...|-.+.+ .|++.+|++ ++||.|++||++..
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999988887775 4466777763 466777655 67899999999755
No 123
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=164.98 Aligned_cols=206 Identities=17% Similarity=0.227 Sum_probs=164.9
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~ 91 (264)
.||+..|.+|.|+-.. .+.||+||.|.+|++||+.++++..++.-|.+.|.+++|+|. ...+++||.|++|++.|++
T Consensus 240 ~gHTdavl~Ls~n~~~--~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNF--RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhcccc--ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 3799999999998643 469999999999999999999999999999999999999985 5788999999999999998
Q ss_pred C-CcEEEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 92 T-GDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 92 ~-~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
. ...-..++....|-.+.|+|.. ..+++++.||+++-+|+|......-....|.++|.+++++..-..++++++.|+.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 4 2333455667789999999955 4566677889999999998865556667899999999999888889999999999
Q ss_pred EEEEECCCCcee----EEecCCCCEEEEEEcCCCcE-EE-EeCCCcEEEEECCCceee
Q 024676 170 VRLWDARSGKIV----QTLETKSPVTSAEVSRDGRY-IT-TADGSSVKFWDANHFGLV 221 (264)
Q Consensus 170 v~iwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~-l~-~~~~~~i~iwd~~~~~~~ 221 (264)
|++|++..-+.. +.+.. ....|.++.|+--+ ++ ++..+.+++||+.++..+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999998754432 22222 23667777787544 33 344567999999876544
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=170.98 Aligned_cols=240 Identities=21% Similarity=0.220 Sum_probs=183.2
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC--ceEEeeeCCcCCEEEEEE-CCCCcEEEEecCCCeEEEE
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCL-DANALFSASGSADFTAKLW 88 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~~~H~~~V~~v~~-~~~~~~l~s~s~D~~v~iw 88 (264)
+.-|++=|+.+... .+|+.|+++|.|-+|.+|+...+ -++.+++.|++-|.++++ .++...+|||+-|+.|.+|
T Consensus 69 me~HsDWVNDiiL~---~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 69 MEHHSDWVNDIILC---GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW 145 (735)
T ss_pred hhhhHhHHhhHHhh---cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence 35688888877665 47889999999999999999876 467788999999999999 7788889999999999999
Q ss_pred eCCCCcE--EEEe----------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676 89 DALTGDE--KHSF----------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (264)
Q Consensus 89 d~~~~~~--~~~~----------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 156 (264)
|++++.. ...+ .+..+|++++.++.+..+++|+..+.+++||-++.+...... .|...|..+..+++
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDD 224 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCC
Confidence 9997732 2222 255689999999999999999999999999998877655554 78889999887765
Q ss_pred CCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEE-EEeCCCcEEEEECCCce-eeeEEecCCCCcee
Q 024676 157 DQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFG-LVKGYNMPCNTESA 233 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~ 233 (264)
+. .+++++.||+|++||+...+|+.++..+ ..+-++..+|+=..+ +++.++.|..=|++++. ++..++-..+....
T Consensus 225 Gt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l 303 (735)
T KOG0308|consen 225 GT-RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL 303 (735)
T ss_pred CC-eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence 54 5556677799999999999999988644 458889999886665 45568899999999853 33333322222222
Q ss_pred eEcCCCCCEEEEecCCCeEEEEEc
Q 024676 234 SLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
...- ...-+.++..|+.|+-|-.
T Consensus 304 ~~~~-~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 304 HLHE-HDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred hhcc-ccCCceeeeccccceecCC
Confidence 2221 1233477788888888854
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.4e-23 Score=175.69 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=151.8
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEe
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWD 89 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd 89 (264)
++..|++.++.+.|++..| .+|++||+||.|+.||++..+-..++.+....|+.|.|+| .+..++++...|.+++||
T Consensus 128 ~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD 205 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD 205 (839)
T ss_pred HhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence 4467999999999999877 5999999999999999999888888999999999999997 467789999999999999
Q ss_pred CCCCc--EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee--
Q 024676 90 ALTGD--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-- 165 (264)
Q Consensus 90 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-- 165 (264)
++... .+....|..+|.+|.|+|+..+|+||+.|+++++||..+++.....--+...++..+.|-|.-.+.|++|+
T Consensus 206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred ccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc
Confidence 98753 22334699999999999999999999999999999997665544333345678999999998888888876
Q ss_pred CCCeEEEEECCCCc-eeEEecCCC-CEEEEEEcC
Q 024676 166 DSGGVRLWDARSGK-IVQTLETKS-PVTSAEVSR 197 (264)
Q Consensus 166 ~d~~v~iwd~~~~~-~~~~~~~~~-~v~~~~~s~ 197 (264)
.|-.|+|||++-.- +...+..+. .+..++|..
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccceEEEEeeccccccceeeeccCccccceeccC
Confidence 55789999997543 345555444 466677754
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.8e-21 Score=166.52 Aligned_cols=256 Identities=17% Similarity=0.193 Sum_probs=188.6
Q ss_pred CcceeecceEeeccCCCeeeeEecc---------CCCCCeEEEEEeCCCCcEEEeCCCCc---e-EE-------------
Q 024676 2 DKRKVAVPLVCHGHSRPVVDLFYSP---------ITPDGFFLVSASKDSSPMLRNGETGD---W-IG------------- 55 (264)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~~~~---------~~~~g~~l~t~s~d~~v~i~~~~~~~---~-~~------------- 55 (264)
|-+|+.+-..+.-|+..|+.|.--| .-|-++ ++|+|.|++||+|++..+. . .+
T Consensus 355 D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred ccccccceeeeeeccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 4455666666678999999987666 123355 5899999999999986521 1 00
Q ss_pred -----e--------e-------eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECC--
Q 024676 56 -----T--------F-------EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE-- 112 (264)
Q Consensus 56 -----~--------~-------~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-- 112 (264)
. | -+-+-.+++++++|++++||+|.+-|++|++++...+.....+ |+..|.++.|+.
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch
Confidence 0 0 0123468999999999999999999999999998876555554 889999999976
Q ss_pred -CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEec------------------------------------
Q 024676 113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH------------------------------------ 155 (264)
Q Consensus 113 -~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------ 155 (264)
..++|++++.|+-|.+||+.........+..|...|+++.|--
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 4689999999999999998654433333334443433333211
Q ss_pred ------------CCCeEEEEeeCCCeEEEEECCCCceeEEecC----CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCc
Q 024676 156 ------------SDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF 218 (264)
Q Consensus 156 ------------~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~ 218 (264)
+...+++++..|+.|+|||+++++....++. ......+...|.|.|++++ +|.++-++|...+
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 1123455666779999999999999988864 2456778899999998764 6899999999999
Q ss_pred eeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+++..-..+........+.++=+.|++.+.|+.|.||.+-
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 9987666665555544444456779999999999999874
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.6e-22 Score=160.61 Aligned_cols=204 Identities=18% Similarity=0.226 Sum_probs=161.6
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC---
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT--- 92 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~--- 92 (264)
.++|.||.-+| +|.+|+.|.-.+.+.+|.+.+|.++..+.+|-..|.++.|+.|+.+++|||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 46788887775 899999998999999999999999999999999999999999999999999999999998632
Q ss_pred ------CcEEEEee-cCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676 93 ------GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (264)
Q Consensus 93 ------~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (264)
-.+...+. |.-+|+.+...+ ...+++|+|.|+++|+||+-.+....... ....+.+++..|.+..++ .
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~y-i 234 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVY-I 234 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEE-e
Confidence 22444443 777899887766 45789999999999999998776654444 345788888777665545 4
Q ss_pred eeCCCeEEEEECCCCc----------------eeEEec-CC--CCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeE
Q 024676 164 CTDSGGVRLWDARSGK----------------IVQTLE-TK--SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG 223 (264)
Q Consensus 164 ~~~d~~v~iwd~~~~~----------------~~~~~~-~~--~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~ 223 (264)
|..+|.|.+.++.+-. .+..+. +. .+|++++++-||.+|++++ |+.+.+||+....++++
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 5677999998875322 122222 22 3799999999999887765 89999999988877776
Q ss_pred Ee
Q 024676 224 YN 225 (264)
Q Consensus 224 ~~ 225 (264)
..
T Consensus 315 l~ 316 (476)
T KOG0646|consen 315 LQ 316 (476)
T ss_pred Hh
Confidence 65
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=8.4e-22 Score=166.46 Aligned_cols=244 Identities=20% Similarity=0.274 Sum_probs=165.9
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEe
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD 89 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd 89 (264)
..|...|-++.|.| ....|++++.|.+++.||+++.++++. +.||.+.|.++||.++. ..|++|++|+.+.|||
T Consensus 97 ~aH~nAifDl~wap---ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP---GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred ccccceeEeeccCC---CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 57999999999997 556899999999999999999988876 89999999999999976 4579999999999999
Q ss_pred CCCCcEEE-------------E---------------eecCCeEEE---EEECCCCCEEEEeeC-CCcEEEeeCCCCCCC
Q 024676 90 ALTGDEKH-------------S---------------FEHKHIVRA---CAFSEDTHLLLTGGF-EKILRIFDLNRPDAP 137 (264)
Q Consensus 90 ~~~~~~~~-------------~---------------~~~~~~v~~---~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~ 137 (264)
+.-..... . ..+...+.. +.+..++..|++++. |+.||+||+++....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 74322000 0 012223333 456677778898887 999999999875433
Q ss_pred CeEe--------ccCCC--CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEecCC---CCEEEEEEcCCCcEE
Q 024676 138 PREV--------GNSSG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLETK---SPVTSAEVSRDGRYI 202 (264)
Q Consensus 138 ~~~~--------~~~~~--~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~---~~v~~~~~s~~~~~l 202 (264)
..+. .+.+. .+.++..-..+..++++|. |+.|..|++++... +..+.+. .--..-..+|++.++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 2211 01111 1333333344677888888 58999999987543 3333321 112234578999998
Q ss_pred EEe-CCCcEEEEECCCcee-eeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 203 TTA-DGSSVKFWDANHFGL-VKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 203 ~~~-~~~~i~iwd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
+++ .+....+|.+.+-+. ...+..+. .....++.+..-.-+++++.|..+++|++..|
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 765 578999999876443 11111111 12233444333334677799999999998654
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.4e-20 Score=151.55 Aligned_cols=196 Identities=14% Similarity=0.208 Sum_probs=157.3
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC--CCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG--ETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDAL 91 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~--~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~ 91 (264)
-.++|.+|.|+|..| .|++|+.|+.++||-+ ..+..++.+.--+.+|.+.+|.|+|. .++++++......||+.
T Consensus 212 s~~~I~sv~FHp~~p---lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP---LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecCCCc---eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 346899999998555 8999999999999855 44566777766788999999999998 88999999999999998
Q ss_pred CCcEEEEee---c-CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 92 TGDEKHSFE---H-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 92 ~~~~~~~~~---~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
+++....-+ + +..+....++|++++++..+..|.|.+....+++...... -.+.+..++|+.++..++++|+ +
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~-~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGG-T 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcC-C
Confidence 876433321 2 2346677889999999999999999999887776543332 4678899999987776666655 4
Q ss_pred CeEEEEECCCCceeEEecCCCC--EEEEEEcCCCcEEEEeCC-CcEEEEECC
Q 024676 168 GGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYITTADG-SSVKFWDAN 216 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~-~~i~iwd~~ 216 (264)
|.|.+||+++..+++.+..... -.+++.|+++.+++++++ |.|.|||..
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 9999999999999998876554 457788899999998775 788999953
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-19 Score=141.60 Aligned_cols=241 Identities=18% Similarity=0.326 Sum_probs=168.3
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--Cce--EEeeeCCcCCEEEEEECC--CCcEEEEecCCCeE
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDA--NALFSASGSADFTA 85 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~~--~~~~~~H~~~V~~v~~~~--~~~~l~s~s~D~~v 85 (264)
..+|.+-|.++.|.+ .|+.+||||.|.++.|||.++ +.+ ....+.|.+.|+.|.|.+ -|+.+|++|.|+++
T Consensus 9 ~s~h~DlihdVs~D~---~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDF---YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred ccCCcceeeeeeecc---cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 468999999999996 899999999999999999644 343 456678999999999975 47889999999999
Q ss_pred EEEeCCCC------c---EEEEe-ecCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCC-----CeE-------e
Q 024676 86 KLWDALTG------D---EKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAP-----PRE-------V 141 (264)
Q Consensus 86 ~iwd~~~~------~---~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~-----~~~-------~ 141 (264)
+||.-... . ...++ .....|+.++|.| -|-.|++++.||++|+|+....-.. ..+ .
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99974211 0 11122 2455799999999 4677889999999999987532111 111 1
Q ss_pred ccCCCCeEEEEEecCC--CeEEEEeeCC-----CeEEEEECCCC--ce--eEEe-cCCCCEEEEEEcCCC----cEEEEe
Q 024676 142 GNSSGSIRTVAWLHSD--QTILSSCTDS-----GGVRLWDARSG--KI--VQTL-ETKSPVTSAEVSRDG----RYITTA 205 (264)
Q Consensus 142 ~~~~~~i~~~~~~~~~--~~~~~~~~~d-----~~v~iwd~~~~--~~--~~~~-~~~~~v~~~~~s~~~----~~l~~~ 205 (264)
+.+..+..|+.|++.- ..+++.++++ +.++||....+ +. +.++ .+..+|..++|.|+- .+|+.+
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 2344567889998642 2356666654 47999976543 22 2233 345789999999983 245554
Q ss_pred C-CCcEEEEECCCc--------------------eeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 206 D-GSSVKFWDANHF--------------------GLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 206 ~-~~~i~iwd~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
. || |+||.++.- +.+..|.- .+..-+..+.. .|.+|++.|.||.||+|..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence 4 55 999998731 01122211 23344555655 5899999999999999964
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=8.3e-21 Score=160.49 Aligned_cols=240 Identities=18% Similarity=0.262 Sum_probs=166.4
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE------EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI------GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~------~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~ 94 (264)
+..|++.......|+.+..||.|.++|.....+. ..+..|.+.|..+.|.|...+|++++.|.++|+||++++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 3677765545578899999999999998765432 4456799999999999988889999999999999999886
Q ss_pred EEE---EeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCC------e-----------------E---eccC
Q 024676 95 EKH---SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP------R-----------------E---VGNS 144 (264)
Q Consensus 95 ~~~---~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~------~-----------------~---~~~~ 144 (264)
..- .+.|...|..+||.|. ...+++|+.|+.|.+||++...... + . ...+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 544 3579999999999995 4667789999999999986322100 0 0 0011
Q ss_pred CCCeEE---EEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec--------C----CCCEEEEEEcCCCcE-EEEeCCC
Q 024676 145 SGSIRT---VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------T----KSPVTSAEVSRDGRY-ITTADGS 208 (264)
Q Consensus 145 ~~~i~~---~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------~----~~~v~~~~~s~~~~~-l~~~~~~ 208 (264)
...+.. +.++.++.+++.++..|+.||+||+++.......+ . ...+.++....-|.+ ++...|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 122333 44455555544444448999999999876432221 1 123667777776755 5667799
Q ss_pred cEEEEECCCcee--eeEEecC--CCC-ceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 209 SVKFWDANHFGL--VKGYNMP--CNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 209 ~i~iwd~~~~~~--~~~~~~~--~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
.|.+||+..... +..|... ..+ ......+ ++.++++|+.|..+++|.+++-+
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCcc
Confidence 999999987543 2222111 011 1222334 68999999999999999987654
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.3e-20 Score=155.38 Aligned_cols=240 Identities=16% Similarity=0.221 Sum_probs=186.0
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCc-CCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~-~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
-..+|.+++|+. ..+.||.+=.||.|.+|++..+=+ ...+.|++ ..|.+++|.+ +..|.|.+-+|+|.-||+.+
T Consensus 24 ~Ps~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence 356899999996 445699999999999999987643 34566664 4799999995 55667888899999999999
Q ss_pred CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
++++.... ...+++.++.+|.+..++.|+.||.+..+++..+........ ..++.+.+++|.+.+. .+++|+.||.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVI 178 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCceE
Confidence 99888876 456899999999999999999999888888765554444333 3458899999987654 46677778999
Q ss_pred EEEECCCCceeEEe-----cCC--C--CEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC-CCCceeeEcCCCC
Q 024676 171 RLWDARSGKIVQTL-----ETK--S--PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLG 240 (264)
Q Consensus 171 ~iwd~~~~~~~~~~-----~~~--~--~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~ 240 (264)
++||..++..++.. ... . -|-++.+-.++.++++-+.|+|++||...+..++.+..+ ....+.+..+ .+
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~ 257 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NE 257 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CC
Confidence 99999999876622 111 1 255666667877766666799999999999998888653 4555666665 47
Q ss_pred CEEEEecCCCeEEEEEcCcc
Q 024676 241 NIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 241 ~~~~~gs~d~~v~vwd~~~g 260 (264)
++|+++|.|+.|..|..+++
T Consensus 258 d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CeEEEccCCCceEEEEecCC
Confidence 88999999999999976654
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-22 Score=178.20 Aligned_cols=203 Identities=21% Similarity=0.297 Sum_probs=160.4
Q ss_pred CCEEEEEECCCCcE----EEEecCCCeEEEEeCCC---Cc---EEEEe-ecCCeEEEEEECCC-CCEEEEeeCCCcEEEe
Q 024676 62 GAVWSCCLDANALF----SASGSADFTAKLWDALT---GD---EKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIF 129 (264)
Q Consensus 62 ~~V~~v~~~~~~~~----l~s~s~D~~v~iwd~~~---~~---~~~~~-~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~ 129 (264)
..-+.++|.+.+.. ++.|..||.|-+||... +. .+..+ .|+.+|..+.|++. +++|++|+.|+.|.+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34577899887665 89999999999999755 22 12222 48899999999995 4599999999999999
Q ss_pred eCCCCCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCC--cEEE
Q 024676 130 DLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDG--RYIT 203 (264)
Q Consensus 130 d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~--~~l~ 203 (264)
|++..+.....-. .....|.+++|+-...+++++++.+|.+-|||+|..+.+..+... ..+..++|+|++ ++++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 9988665443322 245689999999888899999999999999999999877666543 348899999997 4555
Q ss_pred EeC-CC--cEEEEECCCc-eeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceeeC
Q 024676 204 TAD-GS--SVKFWDANHF-GLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264 (264)
Q Consensus 204 ~~~-~~--~i~iwd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i~ 264 (264)
+++ |+ .|.+||+|.- ..++.++.+. ...+..+++.+.+++++++.|+.|.+||..+||.++
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 554 33 6999999864 5677775543 567788898878999999999999999999999874
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.5e-20 Score=152.18 Aligned_cols=252 Identities=17% Similarity=0.184 Sum_probs=182.3
Q ss_pred cceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGS 80 (264)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s 80 (264)
.+..+..+++..|+.+|.+|.|+|..+ .++++.|+||++|.-|.+.+.. +..+..-......+.|+.+..-++.+.
T Consensus 221 ~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 221 EKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred CCccCceEEeccCCccccceEecCCCh--hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee
Confidence 345566777889999999999999654 5789999999999999987753 333332334556677887776666666
Q ss_pred CCCeEEEEeCCCCcE-EEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCC---eEeccCCCCeEEEEEe
Q 024676 81 ADFTAKLWDALTGDE-KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWL 154 (264)
Q Consensus 81 ~D~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~ 154 (264)
.=|...+||.+++.. ...+ -|...|+.++++| ...+|+|++.|++.++||++.-.... .....|.-.|.+..|+
T Consensus 299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 556899999987653 2222 3777999999999 56788899999999999997543322 2335678889999999
Q ss_pred cCCCeEEEEeeCCCeEEEEECC----CCceeEEecCCC------CEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeE
Q 024676 155 HSDQTILSSCTDSGGVRLWDAR----SGKIVQTLETKS------PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG 223 (264)
Q Consensus 155 ~~~~~~~~~~~~d~~v~iwd~~----~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~ 223 (264)
|.++.++++|. |..|+|||.. .......+.+++ ....+.|.|+..+++.+. -+.|-|+|-..++.+..
T Consensus 379 Ps~gtl~TT~~-D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 379 PSGGTLLTTCQ-DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred CCCCceEeecc-CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 99999777765 5899999984 334444444432 234578999988888775 57899999988887766
Q ss_pred EecCCC---CceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 224 YNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 224 ~~~~~~---~~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
+..+.. +....++|....+++.|+.-|.|+||--
T Consensus 458 l~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 458 LHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccCccccccccceeecccccceeccCCccceEEEEec
Confidence 544332 2334567753336666777899999953
No 135
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=5.8e-21 Score=151.86 Aligned_cols=243 Identities=13% Similarity=0.181 Sum_probs=180.3
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
...+..|.+.|.+|.+.. ..+++++.|++|+.|.++. ..+.++.+. ..+..+.-+..+..++|++.+ |-||
T Consensus 102 ~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~--i~IW 172 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQ-----TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGEQ--IDIW 172 (433)
T ss_pred hheeecccCceeeEEecc-----cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccccccccccCce--eeec
Confidence 445678999999999873 4568999999999998764 456666543 344555555566777888765 8999
Q ss_pred eCCCCcEEEEee-cCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676 89 DALTGDEKHSFE-HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (264)
Q Consensus 89 d~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (264)
|..-..++..+. -...+.++.++|.. .+|++|..|+.|.+||++......... .....+.++|+| ....++++.+
T Consensus 173 D~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP-eafnF~~a~E 249 (433)
T KOG0268|consen 173 DEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP-EAFNFVAANE 249 (433)
T ss_pred ccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCc-cccceeeccc
Confidence 987666777665 34568899999955 566677799999999998776554433 234567899999 6677888899
Q ss_pred CCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCC
Q 024676 167 SGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGN 241 (264)
Q Consensus 167 d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 241 (264)
|-.+..+|++..+ ++.... +.+.|.++.|||-|+-+++++ |.+|+||..+.+..=..|... .+..+.-++. +.+
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dsk 328 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSK 328 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-ccc
Confidence 9999999998754 444443 446799999999998766654 999999999876544444322 2233444555 589
Q ss_pred EEEEecCCCeEEEEEcCcceeeC
Q 024676 242 IFIAGGEDMWVHVFDFHTGEQIG 264 (264)
Q Consensus 242 ~~~~gs~d~~v~vwd~~~g~~i~ 264 (264)
++++||.|+.||+|.....+++|
T Consensus 329 yi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EEEecCCCcceeeeecchhhhcC
Confidence 99999999999999987766654
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=158.88 Aligned_cols=228 Identities=19% Similarity=0.325 Sum_probs=172.8
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 96 (264)
+.|..++|.| ||..|+.+..| .+.+||.+.|..+++++||++.|++++|+.||+.++||+.|+.|.+|.- .-+-+
T Consensus 13 hci~d~afkP---DGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~-klEG~ 87 (1081)
T KOG1538|consen 13 HCINDIAFKP---DGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS-KLEGI 87 (1081)
T ss_pred cchheeEECC---CCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecc-cccce
Confidence 3899999996 89887776554 4679999999999999999999999999999999999999999999984 33445
Q ss_pred EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
..+.|.+.+.+..|+|-.+.|++|+... .-+|..+.... ........+.+++|..++. +++-|..+|+|.|-+-.
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V---~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSV---SKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKN 162 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhH---HhhhhheeEEEeeecCCCc-EEEEeccCceEEeecCC
Confidence 6788999999999999999999988643 45676532211 1112345678889997665 55566778999997543
Q ss_pred CCceeEEe-c---CCCCEEEEEEcCCC-----cEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676 177 SGKIVQTL-E---TKSPVTSAEVSRDG-----RYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG 246 (264)
Q Consensus 177 ~~~~~~~~-~---~~~~v~~~~~s~~~-----~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (264)
+++...+ . .+++|.+++|+|+. ..++. ..+.++.++.+.....-+.-.....+.++..+++ |+++..|
T Consensus 163 -gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~N-GEy~LiG 240 (1081)
T KOG1538|consen 163 -GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTN-GEYILLG 240 (1081)
T ss_pred -CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccC-CcEEEEc
Confidence 4333223 2 35789999999874 23433 3477888888865544444555566677888885 9999999
Q ss_pred cCCCeEEEEE
Q 024676 247 GEDMWVHVFD 256 (264)
Q Consensus 247 s~d~~v~vwd 256 (264)
|.|+.+++|-
T Consensus 241 Gsdk~L~~fT 250 (1081)
T KOG1538|consen 241 GSDKQLSLFT 250 (1081)
T ss_pred cCCCceEEEe
Confidence 9999999995
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=1e-20 Score=156.16 Aligned_cols=236 Identities=15% Similarity=0.188 Sum_probs=181.8
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
-..-|..+... |||+.|++|+.-.++.|||+..-+.. ..+..-.-..++++.+||.+...++..||.|.|||+.+
T Consensus 464 rdnyiRSckL~---pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 464 RDNYIRSCKLL---PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred cccceeeeEec---CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 34456666666 49999999999999999999765432 23332223567889999999988999999999999999
Q ss_pred CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
...++.++ |.+.+.++.++++|..|-||+.|+++|-||++.+....+- .....|.++-++|.++++ +.+..++.+-
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWl-avGMens~ve 617 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWL-AVGMENSNVE 617 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccce-eeecccCcEE
Confidence 88888876 8899999999999999999999999999999876543222 234568888889888775 4568888888
Q ss_pred EEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC
Q 024676 172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (264)
Q Consensus 172 iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~ 250 (264)
|....+-+..+.-.+.+-|.++.|++.|+++++ +-|+.+..|....+..+...+......+...+. ++++++|||.|+
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~-ddkyIVTGSGdk 696 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISF-DDKYIVTGSGDK 696 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeecc-CceEEEecCCCc
Confidence 877665554443455667999999999998765 568899999988886543333334444555555 589999999999
Q ss_pred eEEEEEc
Q 024676 251 WVHVFDF 257 (264)
Q Consensus 251 ~v~vwd~ 257 (264)
..-||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 9888865
No 138
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=9e-20 Score=143.29 Aligned_cols=238 Identities=24% Similarity=0.347 Sum_probs=171.7
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-----C--c-----eEEeeeCC-cCCEEEEEEC-------CCCcEEEE
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----G--D-----WIGTFEGH-KGAVWSCCLD-------ANALFSAS 78 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-----~--~-----~~~~~~~H-~~~V~~v~~~-------~~~~~l~s 78 (264)
...++|+| ||..+++-+.|..+++|++.. + . ....++-. ...|+..+|- |+..++++
T Consensus 52 ~kgckWSP---DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 52 LKGCKWSP---DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hccceeCC---CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 34678885 999999999999999998642 1 0 01112211 2346666663 67788999
Q ss_pred ecCCCeEEEEeCCCCcEEEEee---cCCe---EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEe-----ccCC
Q 024676 79 GSADFTAKLWDALTGDEKHSFE---HKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REV-----GNSS 145 (264)
Q Consensus 79 ~s~D~~v~iwd~~~~~~~~~~~---~~~~---v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~-----~~~~ 145 (264)
.++|.-|+|||..+|+....+. |... -.+++|+|+|..|++ +..++|++||+..+.... ... ....
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999999887764 4443 468999999999885 578999999984332211 111 1224
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-C-CCcEEEEECCCce-ee
Q 024676 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-D-GSSVKFWDANHFG-LV 221 (264)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~~~~-~~ 221 (264)
+-+.+++++|.+...++.++.-+.+-|+.-..++++..+. +...|+-+.|.++|..|.++ . +..|..||+|... ++
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 5688899999888888888888899999888888877664 55679999999999766544 3 6789999999753 33
Q ss_pred eEEec---CCCCc-eeeEcCCCCCEEEEecCCCeEEEEEcCc-ce
Q 024676 222 KGYNM---PCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHT-GE 261 (264)
Q Consensus 222 ~~~~~---~~~~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~-g~ 261 (264)
-.+.- ..+.. -+.+.| .+++|++|++||.|++||++. |+
T Consensus 288 ~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCC
Confidence 22221 12222 233445 589999999999999999886 55
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.4e-20 Score=147.92 Aligned_cols=240 Identities=15% Similarity=0.231 Sum_probs=172.2
Q ss_pred cCCCeeeeEeccCCCC-CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCC
Q 024676 15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT 92 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~-g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~ 92 (264)
|.+....++|.=.+.+ .=+||.|+.-|.|+|.|+.++++.+.+.||.+.|+.+.+.|+. ++++++|.|.+||||++.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 7777788888754443 3488999999999999999999999999999999999999976 6789999999999999999
Q ss_pred CcEEEEee----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe---------------------------Ee
Q 024676 93 GDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---------------------------EV 141 (264)
Q Consensus 93 ~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~---------------------------~~ 141 (264)
..++..+. |...|.++.|++++.++++|+.|..+++|+++..+.... ..
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99998884 888999999999999999999999999999973221100 00
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC-CCCce-------------eEEecC-CCCEEEEE--EcCCCcEEEE
Q 024676 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKI-------------VQTLET-KSPVTSAE--VSRDGRYITT 204 (264)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~-~~~~~-------------~~~~~~-~~~v~~~~--~s~~~~~l~~ 204 (264)
..|...+-|+.|+ +. ++++-+-++.|..|-. +-++. +..++. ...+-.+. +.|-++.|+.
T Consensus 248 diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred ccccchHHHHHHH--hh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 1122333444444 23 4445454579999987 21111 122221 12344444 4555677776
Q ss_pred eC-CCcEEEEECCCceee--eEEec--CC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 205 AD-GSSVKFWDANHFGLV--KGYNM--PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 205 ~~-~~~i~iwd~~~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+. .+.+.+||+++.++. .++.. .. .....+++ .++.+|+....|++|--||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS-~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS-RDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec-ccCcEEEEEeCCCcEEEEEee
Confidence 54 689999999987763 22221 11 22233444 469999999999999999853
No 140
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.3e-21 Score=158.46 Aligned_cols=245 Identities=19% Similarity=0.254 Sum_probs=176.9
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--------CceEEeeeCCcCCEEEEEECCCCcEEEEe
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------GDWIGTFEGHKGAVWSCCLDANALFSASG 79 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--------~~~~~~~~~H~~~V~~v~~~~~~~~l~s~ 79 (264)
....++.|...|.+++|+|.+| .|++++.|+.+.+|++.+ -+.+.+|.+|+++|.|+++.+.+....||
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 3446788999999999998776 799999999999999832 13578999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCc---------EE--EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc--CCC
Q 024676 80 SADFTAKLWDALTGD---------EK--HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSG 146 (264)
Q Consensus 80 s~D~~v~iwd~~~~~---------~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~ 146 (264)
+.||+|+.|++.... .+ ....|...|+.+++++....|++|+.|++++.|+...... ..++. ..+
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccC
Confidence 999999999764221 11 1124888999999999999999999999999999754332 11211 123
Q ss_pred CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--------CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCC
Q 024676 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYI-TTADGSSVKFWDANH 217 (264)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~ 217 (264)
....+++......+.++...-+.-.+.|.+..+.+..+.. ...++.+..+|++-+. .+..++.|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 3345555443323333322323344445555544444422 1347778888887664 456789999999999
Q ss_pred ceeeeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 218 FGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 218 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+.++..-..+ ....++++.++ |-+|.+|+.|+.+++|..+
T Consensus 521 ~~~l~s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 521 GKILHSMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cccchheeeccceecceeecCC-CceEEeecCCceeehhhcc
Confidence 9887655443 34456677775 8899999999999999864
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-19 Score=147.32 Aligned_cols=229 Identities=16% Similarity=0.202 Sum_probs=166.3
Q ss_pred EEEEEeCCC-CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEE
Q 024676 33 FLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAF 110 (264)
Q Consensus 33 ~l~t~s~d~-~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~ 110 (264)
||+++...+ .+.+|...........----++|.+++-+|.|.+++.|.--+.+.+|.+.+|..+..+ .|-..|+++.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 444443333 4556666543322211112367999999999999998888899999999999877766 47889999999
Q ss_pred CCCCCEEEEeeCCCcEEEeeCC-------CCCC-CCeEeccCCCCeEEEEEecCC-CeEEEEeeCCCeEEEEECCCCcee
Q 024676 111 SEDTHLLLTGGFEKILRIFDLN-------RPDA-PPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIV 181 (264)
Q Consensus 111 ~~~~~~l~s~~~d~~i~~~d~~-------~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~ 181 (264)
+-++.+++||+.|+-+.+|.+- +... +...+..|.-+|+.+...+.+ ...+.+++.|+++|+||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999862 1111 223445567777777655432 236778889999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCce----------------eeeEEecCC---CCceeeEcCCCCC
Q 024676 182 QTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFG----------------LVKGYNMPC---NTESASLEPKLGN 241 (264)
Q Consensus 182 ~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~----------------~~~~~~~~~---~~~~~~~~~~~~~ 241 (264)
.++....++.+++++|.++.+ +++.+|.|.+.++.+.. .++.+..+. ...+.+.+. +|.
T Consensus 212 lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-Dgt 290 (476)
T KOG0646|consen 212 LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGT 290 (476)
T ss_pred EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-Ccc
Confidence 888888899999999998765 55567888777664321 123333322 334555555 599
Q ss_pred EEEEecCCCeEEEEEcCccee
Q 024676 242 IFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 242 ~~~~gs~d~~v~vwd~~~g~~ 262 (264)
+|++|++||.|+|||..+-+.
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EEEeeCCCCCEEEEecchHHH
Confidence 999999999999999876543
No 142
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=135.48 Aligned_cols=221 Identities=18% Similarity=0.310 Sum_probs=166.2
Q ss_pred CCCCCeEEEEEeCCCCcEEEeCCC---------Cc-eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE-
Q 024676 27 ITPDGFFLVSASKDSSPMLRNGET---------GD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE- 95 (264)
Q Consensus 27 ~~~~g~~l~t~s~d~~v~i~~~~~---------~~-~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~- 95 (264)
++|.+++|++|+.+|++-+..+.. ++ .+-.+++|.++|+.++|. ..+|++|+ ||.|+=|..+....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES 94 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh
Confidence 346899999999999999987643 22 345678999999999998 44566666 59999997654321
Q ss_pred ---EEEee-----cC-----CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676 96 ---KHSFE-----HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (264)
Q Consensus 96 ---~~~~~-----~~-----~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (264)
+..++ +. -.|+.+...|+.+-++.++.|+.+.-||+++++. .+....|...+.+++--...+. +.
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~R~~~~q-il 172 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVGRNANGQ-IL 172 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeeecccCcc-ee
Confidence 11111 11 2478999999877777778999999999998864 4566678999999886444444 55
Q ss_pred EeeCCCeEEEEECCCCceeEEecCC-----------CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCc
Q 024676 163 SCTDSGGVRLWDARSGKIVQTLETK-----------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE 231 (264)
Q Consensus 163 ~~~~d~~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 231 (264)
++++||++||||.++++++..++.. ..|.+++. +...++++.+..+.+|.++..+++..|.++.+.-
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~ 250 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVH 250 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEeccccee
Confidence 7789999999999999998776431 12444444 5568999988899999999999999999887655
Q ss_pred eeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 232 SASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 232 ~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
-..| ..+.++++|+.+.|.-|-+
T Consensus 251 ~v~F---~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 251 LVDF---VDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred Eeee---ecceEEEeccccceeeeee
Confidence 4444 3567888998888888865
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=4.7e-20 Score=160.12 Aligned_cols=197 Identities=20% Similarity=0.287 Sum_probs=172.7
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee---eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~---~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
..+.+|.-+ +-|++.+.|+..|.|-+++..+|-....| ..|+++|..++.+..++.++|++.||-+++||....
T Consensus 449 ~~~~av~vs---~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 449 INATAVCVS---FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred cceEEEEEe---ccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence 456666666 47999999999999999999999888888 479999999999999999999999999999999999
Q ss_pred cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676 94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (264)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw 173 (264)
..+..+....++..+.++....+++.+..|-.|+++|..+.+. .+++..|...++.++|+|++.++++++ .|++||+|
T Consensus 526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~w 603 (910)
T KOG1539|consen 526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTW 603 (910)
T ss_pred ceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEE
Confidence 9888888888999999999999999999999999999876543 455667889999999999988877654 56999999
Q ss_pred ECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-C-CcEEEEECCCc
Q 024676 174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-G-SSVKFWDANHF 218 (264)
Q Consensus 174 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~iwd~~~~ 218 (264)
|+.++.++..+....+..++.+||+|.||++.. | ..|.+|-.+..
T Consensus 604 Dlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 604 DLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred eccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 999999999898889999999999999998754 4 68999987653
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1.6e-20 Score=155.14 Aligned_cols=242 Identities=16% Similarity=0.187 Sum_probs=183.2
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
.+|-+-|.++..+. ..+++.||++ |-|+|||+..- ..+..+. ...+.|+++...+|+..|++|+.-.++-|
T Consensus 416 L~HGEvVcAvtIS~---~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN---PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hccCcEEEEEEecC---CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 36888888887764 5678888875 67899998653 2333333 35678999999999999999999999999
Q ss_pred EeCCCCcEEEEeecCC---eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 88 WDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 88 wd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
||+.+.......+... ....++.+|+.+++++|+.||.|.+||+.... ..+++..|.....|+..++++ +-+-++
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dG-tklWTG 569 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDG-TKLWTG 569 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCC-ceeecC
Confidence 9998765433333222 46778999999999999999999999998654 345666788888999988655 556677
Q ss_pred eCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEE
Q 024676 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (264)
Q Consensus 165 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (264)
+-|++||-||+|+++.+......+.|.++-++|++.+++.+ .++.+.+....+-+.-.-........+.-|.+ .|++|
T Consensus 570 GlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwf 648 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWF 648 (705)
T ss_pred CCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCcee
Confidence 77899999999999988877888899999999999998876 45677776655433211111122334555666 59999
Q ss_pred EEecCCCeEEEEEcCcce
Q 024676 244 IAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 244 ~~gs~d~~v~vwd~~~g~ 261 (264)
++-|.|..+..|.+--|.
T Consensus 649 vStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred eecCchhhhhhccCcccc
Confidence 999999999999865443
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.5e-20 Score=150.93 Aligned_cols=235 Identities=15% Similarity=0.239 Sum_probs=179.7
Q ss_pred CeeeeEeccCCCCCeEEEEEe--CCCCcEEEeCC--CCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 18 PVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGE--TGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s--~d~~v~i~~~~--~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
.+..+.|+. .++|++++ .|+.+++|--. +++ .++...|. .-.|++......++++|+..+.|+|||+.
T Consensus 36 g~~s~~w~~----~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 36 GDFSFNWQR----RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred cceeeeccc----cceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 466777773 33455555 46667777433 232 23444443 33455555566899999999999999998
Q ss_pred CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
...+.+.+ .|+..|+++.|+-.+.++++++..|.|-+..+.++......-......+.-+.|++...+++.+++++|.|
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 65544444 48889999999999999999999999999998776543333333456777889999899999999999999
Q ss_pred EEEECCCCceeEEe--cCCCCEEEEEEcCCCc-EEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676 171 RLWDARSGKIVQTL--ETKSPVTSAEVSRDGR-YITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG 246 (264)
Q Consensus 171 ~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (264)
.+||.....++..+ .+..|...++|+|.+. +|++ +-|..|.+||++.....+.+....+....+|.+ .|.+|++|
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG 268 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAG 268 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEee
Confidence 99999988887666 3567888999999874 4444 558999999999888888887777777777776 59999999
Q ss_pred cCCCeEEEEEcCc
Q 024676 247 GEDMWVHVFDFHT 259 (264)
Q Consensus 247 s~d~~v~vwd~~~ 259 (264)
...|.|+.||++.
T Consensus 269 ~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 269 NSKGELIAYDMRS 281 (673)
T ss_pred cCCceEEEEeccc
Confidence 9999999999863
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.3e-19 Score=154.59 Aligned_cols=205 Identities=15% Similarity=0.214 Sum_probs=163.6
Q ss_pred ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (264)
Q Consensus 7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~ 86 (264)
+.|.....|...|.+++.. +++|++|+.+++|.+|....++.-..+..-+-+++.++|+.+|.++|.||.|-.||
T Consensus 47 e~P~ti~~~g~~v~~ia~~-----s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK 121 (933)
T KOG1274|consen 47 EEPETIDISGELVSSIACY-----SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVK 121 (933)
T ss_pred cCCchhhccCceeEEEeec-----ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEE
Confidence 3444444577888887664 45899999999999998887764333444557899999999999999999999999
Q ss_pred EEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-------CCCCeEEEEEecCCC
Q 024676 87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-------SSGSIRTVAWLHSDQ 158 (264)
Q Consensus 87 iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~ 158 (264)
+-++........+ .|..+|.++.|+|++++|++.+-||.+++||+.++......-+- ....+...+|.|+++
T Consensus 122 ~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 122 LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 9999887655555 58999999999999999999999999999999876543322111 122356678999989
Q ss_pred eEEEEeeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCC
Q 024676 159 TILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTAD-GSSVKFWDANH 217 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~ 217 (264)
.+++.+.+ +.|++|+..+.+....+.. ++.+..++|+|+|+||+++. ++.|-|||..+
T Consensus 202 ~la~~~~d-~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 202 TLAVPPVD-NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEeeccC-CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 88887765 8999999999887766642 34489999999999998876 89999999985
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-20 Score=168.50 Aligned_cols=246 Identities=15% Similarity=0.226 Sum_probs=188.0
Q ss_pred cCCCeeeeEeccCCCC-CeEEEEEeCCCCcEEEeCCC---C---ceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEE
Q 024676 15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGET---G---DWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAK 86 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~-g~~l~t~s~d~~v~i~~~~~---~---~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~ 86 (264)
-...-+.|+|.+.-.+ --.+|.|..||.|.+||... + ..+.+++-|++.|+.+.|++... .||+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3445678889863211 01489999999999999865 2 34677888999999999998765 899999999999
Q ss_pred EEeCCCCcEEEEe---ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-CCCeEEEEEecCCCeEE
Q 024676 87 LWDALTGDEKHSF---EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGSIRTVAWLHSDQTIL 161 (264)
Q Consensus 87 iwd~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~ 161 (264)
|||++..+.-..+ ...+.|.+++|+. ..++|++++.++.+.+||++..+.+....... ...+..++|.|++-+.+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 9999875432333 2345799999988 45778888999999999998775444333222 24578899999988877
Q ss_pred EEeeCCC---eEEEEECCCCc-eeEEec-CCCCEEEEEEcCCC-cEE-EEeCCCcEEEEECCCceeeeEEecCCC-Ccee
Q 024676 162 SSCTDSG---GVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPCN-TESA 233 (264)
Q Consensus 162 ~~~~~d~---~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~ 233 (264)
+++++|. .|.+||+|-.. .++.++ |...|.++.|++.. .++ +++.|+.|.+|+.++++.+..+....+ ....
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv 302 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV 302 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee
Confidence 7777654 59999998643 556664 44569999999977 554 456799999999999999988876433 3456
Q ss_pred eEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 234 SLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
.|.++....|++++-||.|-||.+..+
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeecC
Confidence 788888889999999999999987644
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=3.5e-19 Score=154.78 Aligned_cols=219 Identities=20% Similarity=0.287 Sum_probs=174.8
Q ss_pred EEEEe-CCCCcEEEeCCCCce-EEeee-----CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe----ecC
Q 024676 34 LVSAS-KDSSPMLRNGETGDW-IGTFE-----GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF----EHK 102 (264)
Q Consensus 34 l~t~s-~d~~v~i~~~~~~~~-~~~~~-----~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~~ 102 (264)
++++. .+..++-|+...... ...|. .-...+.+++.++.|.+.+.|+..|+|-++++.+|.....| .|.
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK 493 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence 34444 445678898765432 11222 22367899999999999999999999999999999877777 689
Q ss_pred CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE
Q 024676 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182 (264)
Q Consensus 103 ~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~ 182 (264)
.+|++++.+.-++.+++++.+|.++.||..+....... ....++.++.+.-..+ +++.+.+|-.|+++|..|.+.++
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l--~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL--RLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeee--ccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhH
Confidence 99999999999999999999999999999765533222 2334555655543333 45555677899999999999999
Q ss_pred Eec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCC-CeEEEEE
Q 024676 183 TLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED-MWVHVFD 256 (264)
Q Consensus 183 ~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-~~v~vwd 256 (264)
.+. +.+.++..+|||||++++++ -|++|++||+.++.++..+.....+.+..++|+ |++|++...| .-|++|-
T Consensus 571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn-gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN-GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC-CCEEEEEEecCceEEEEE
Confidence 887 56779999999999998765 489999999999999999999888889999985 9999999998 7799994
No 149
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=8.6e-20 Score=146.70 Aligned_cols=201 Identities=17% Similarity=0.288 Sum_probs=147.2
Q ss_pred eeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcE--------EEEeecCCeEEEEEECCC-CCEEEEeeCCCc
Q 024676 56 TFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE--------KHSFEHKHIVRACAFSED-THLLLTGGFEKI 125 (264)
Q Consensus 56 ~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~--------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~ 125 (264)
.+.||+++|..++|.|-+ .-+||||.|.+|+||.+-.+.. .....|...|..++|||. .+.|+|++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 467999999999999855 4579999999999999865422 222348889999999994 578899999999
Q ss_pred EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcEEE
Q 024676 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYIT 203 (264)
Q Consensus 126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~ 203 (264)
+.+||+.+++..... .|...+.+++|+.++.. +++...|..|||||.++++.+..-..+ .....+.|-.+|.+++
T Consensus 156 v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL--DHPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeec--CCCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999998765443 38889999999986665 555567799999999999988766432 2234455777888777
Q ss_pred Ee----CCCcEEEEECCCcee-e--eEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 204 TA----DGSSVKFWDANHFGL-V--KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 204 ~~----~~~~i~iwd~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
++ +++.+-+||..+.+. + ..........---+.++.+-+.++|=.|+.||.|.++.
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 66 357899999887643 2 22222222222223343344556788899999998764
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.3e-19 Score=149.55 Aligned_cols=205 Identities=14% Similarity=0.174 Sum_probs=172.3
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecC--CeEEEEE
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACA 109 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~v~~~~ 109 (264)
.|+++|+..+.|.|||+......+.+++|+..|.+|.+..+..++|+++..|-|.|-.+.++.....+.+. ..|+.+.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 79999999999999999855566788999999999999999999999999999999999998777777654 4688999
Q ss_pred ECCCCCEEE-EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC
Q 024676 110 FSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188 (264)
Q Consensus 110 ~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~ 188 (264)
|+|..+.++ +++.+|.+.+||+............|..+...++|+|.++.++++.+.|..|.+||.++.+....+....
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~ 251 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH 251 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence 999876655 5789999999999877766677777889999999999999999999999999999999888877788888
Q ss_pred CEEEEEEcCCCcEEEEeC-CCcEEEEECCCc-eeeeEEecCC-CCceeeEc
Q 024676 189 PVTSAEVSRDGRYITTAD-GSSVKFWDANHF-GLVKGYNMPC-NTESASLE 236 (264)
Q Consensus 189 ~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~-~~~~~~~~ 236 (264)
|...++|+++|.+|+++. .|.|..||+|.. .++.....+. ...+++|.
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 999999999999988765 589999999865 3454443322 23344444
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=141.68 Aligned_cols=201 Identities=15% Similarity=0.181 Sum_probs=152.1
Q ss_pred CCeeeeEeccCC--CCC--eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC--CcEEEEecCCCeEEEEeC
Q 024676 17 RPVVDLFYSPIT--PDG--FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDA 90 (264)
Q Consensus 17 ~~v~~~~~~~~~--~~g--~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~iwd~ 90 (264)
.+-.++.+.|.. .+| ..+|++-..++|++||..++..++.|++|.+.+..++|..+ ...+.+|+.||+||+||+
T Consensus 22 ~~~~~Lk~~~q~~~~~~~e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 22 NEDFCLKYDIQEQVKDGFETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred cccceeeccchhhhccCcceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 344567775422 233 46888999999999999999999999999999999999763 355789999999999999
Q ss_pred CCCcEEEEee---cC-CeEEEEEECCCCCEEEEee----CCCcEEEeeCCCCCCCC-eEeccCCCCeEEEEEecCCCeEE
Q 024676 91 LTGDEKHSFE---HK-HIVRACAFSEDTHLLLTGG----FEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTIL 161 (264)
Q Consensus 91 ~~~~~~~~~~---~~-~~v~~~~~~~~~~~l~s~~----~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~ 161 (264)
+.......+. ++ .+..+++.+-.++++++|+ .+-.+.+||++..+... .....|..-|+++.|.|.+..++
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence 8865444432 22 3556666555677777664 35568899998765533 33456888999999999999999
Q ss_pred EEeeCCCeEEEEECCCCce----eEEecCCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCC
Q 024676 162 SSCTDSGGVRLWDARSGKI----VQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANH 217 (264)
Q Consensus 162 ~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~ 217 (264)
++|+-||.|.|||++.... +..++..+.|.++.|..++ +...-+...+..+|+++.
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 9999999999999986532 3455666779999999887 544445667888888764
No 152
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=8.3e-18 Score=139.18 Aligned_cols=229 Identities=14% Similarity=0.197 Sum_probs=174.1
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc--
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-- 94 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-- 94 (264)
+-|.++.|.+ +|+. +||..+|.+.||+..+.+..++...|.+.|.+++...+|.++ ||++|..|-.||-.-.+
T Consensus 247 k~Vl~v~F~e---ngdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 247 KFVLCVTFLE---NGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred eEEEEEEEcC---CCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccc
Confidence 5788999996 7764 799999999999998887777666999999999999999776 59999999999831110
Q ss_pred ---------E------------------------------EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC
Q 024676 95 ---------E------------------------------KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135 (264)
Q Consensus 95 ---------~------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~ 135 (264)
. +....|......++.+|+...+++++.|+.+++|+- .+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--Cc
Confidence 0 011125556778999999999999999999999992 23
Q ss_pred CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEE
Q 024676 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWD 214 (264)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd 214 (264)
.....+ ...+..++.|-|.+ .++.+...|...+.|.++...+..-....+++.+.++|+|.+|+.+ .|+.|.||-
T Consensus 400 ~~wt~~--~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 400 LEWTKI--IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred eeEEEE--ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 333322 34567788877766 5666777799999999997665554557889999999999998765 589999998
Q ss_pred CCCc----eeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 215 ANHF----GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 215 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+... ..+..+.. ....-+.|++ ++++|.+-|-|--+..|...
T Consensus 476 Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred ECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEEccc
Confidence 7542 23333333 3445567777 58999999999999999543
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=5.2e-20 Score=144.79 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=144.6
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee---eCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~---~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
-..+.||-..|++|+|+|.-| ++|+++|.|.++|+|++.+..++..| +||++.|.++.|+.++.+++|++.|.++
T Consensus 128 ~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhsl 205 (385)
T KOG1034|consen 128 SKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSL 205 (385)
T ss_pred ccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceE
Confidence 344579999999999999544 79999999999999999999988776 5699999999999999999999999999
Q ss_pred EEEeCCCCcEEE------Ee-----------------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC
Q 024676 86 KLWDALTGDEKH------SF-----------------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA 136 (264)
Q Consensus 86 ~iwd~~~~~~~~------~~-----------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~ 136 (264)
++|++...+... .+ -|..+|.++.|- +.++++-+-++.|..|....-+.
T Consensus 206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e 283 (385)
T KOG1034|consen 206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEE 283 (385)
T ss_pred EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhh
Confidence 999987432111 11 023333333332 57889988889999997521111
Q ss_pred C-------------CeEeccCCCCeEEEEEe-cCCCeEEEEeeCCCeEEEEECCCCceeE--Ee---cCCCCEEEEEEcC
Q 024676 137 P-------------PREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIVQ--TL---ETKSPVTSAEVSR 197 (264)
Q Consensus 137 ~-------------~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~---~~~~~v~~~~~s~ 197 (264)
. ...+.-.++.++-+.|. ..-+..++.+...|.|.+||++..++.. ++ .....|...+||.
T Consensus 284 ~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~ 363 (385)
T KOG1034|consen 284 SIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR 363 (385)
T ss_pred hhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc
Confidence 1 11112233455555543 1223345566677999999999876521 12 2345689999999
Q ss_pred CCcEEE-EeCCCcEEEEEC
Q 024676 198 DGRYIT-TADGSSVKFWDA 215 (264)
Q Consensus 198 ~~~~l~-~~~~~~i~iwd~ 215 (264)
|+.+|+ ..++++|.-||-
T Consensus 364 dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 364 DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCcEEEEEeCCCcEEEEEe
Confidence 998765 467889998884
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=4.3e-18 Score=145.43 Aligned_cols=253 Identities=19% Similarity=0.267 Sum_probs=185.7
Q ss_pred eeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--------------------e-EEe-------
Q 024676 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--------------------W-IGT------- 56 (264)
Q Consensus 5 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--------------------~-~~~------- 56 (264)
++.....+.||++-|..|+|+....+.-+||++|+|..||||.+.-+. . ..+
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 567777789999999999999877767899999999999999653211 0 111
Q ss_pred ---eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-----------------------------EE--------
Q 024676 57 ---FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----------------------------EK-------- 96 (264)
Q Consensus 57 ---~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------------------------~~-------- 96 (264)
+.||++.|+++.|+|.+..|.|+|.|+++.+|.-.... .+
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 24899999999999999889999999999999742220 00
Q ss_pred -EEe---------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc---CCCCeEEEEEecCC
Q 024676 97 -HSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---SSGSIRTVAWLHSD 157 (264)
Q Consensus 97 -~~~---------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~ 157 (264)
+.+ .|.+.|..+.|+|.|++|++.+.|.+=|+|-....+....++.- |.-.+.|+++.+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~- 418 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE- 418 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence 000 15567999999999999999999999999875422323333321 3445788888764
Q ss_pred CeEEEEeeCCCeEEEEECCC----------C----------------------ceeE---------------Ee------
Q 024676 158 QTILSSCTDSGGVRLWDARS----------G----------------------KIVQ---------------TL------ 184 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~----------~----------------------~~~~---------------~~------ 184 (264)
...+++|.+...+|+|+... + +.+. +.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 56788888888999997531 0 0000 00
Q ss_pred ------------------------cCCCCEEEEEEcCCCcEEEEeC------CCcEEEEECCCceeeeEEecCCC-Ccee
Q 024676 185 ------------------------ETKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCN-TESA 233 (264)
Q Consensus 185 ------------------------~~~~~v~~~~~s~~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~~~~-~~~~ 233 (264)
.+...|.+++.+|++++++++- -..|++|+..+...++.+..+.. ...+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 0013689999999999998752 13599999999887776665543 4567
Q ss_pred eEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 234 SLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
.|+| ++++|++.|-|+++.+|....
T Consensus 579 ~FSp-dg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 579 AFSP-DGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred EECC-CCcEEEEeecCceEEeeeeec
Confidence 7777 599999999999999998643
No 155
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=4e-18 Score=132.60 Aligned_cols=239 Identities=21% Similarity=0.361 Sum_probs=168.9
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC---CCcEEEEecCCCeEEEEeC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDA 90 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~---~~~~l~s~s~D~~v~iwd~ 90 (264)
+|+-.|..+-|-|+ |.-++.++|-|+++++||.++.+....|. -++.|++-+++| ...++|+|-+|-.||+-|+
T Consensus 99 ~Hky~iss~~WyP~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 99 GHKYAISSAIWYPI--DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred cceeeeeeeEEeee--cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 79999999999995 44578999999999999999988766665 346788888887 3567899999999999999
Q ss_pred CCCcEEEEee-cCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCC------------CC--CeEeccCCCCeEEEEEe
Q 024676 91 LTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPD------------AP--PREVGNSSGSIRTVAWL 154 (264)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~------------~~--~~~~~~~~~~i~~~~~~ 154 (264)
.+|....++. |...|..+.|+|... .|++|+.|+.||+||++... .+ .+....|.+.++.++|.
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 9999888875 889999999999665 46678999999999997531 11 11233467889999999
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCcee-EEe---cCC---CCEEEEEEcCCC-cEEEEeCCCcEEEEECCCceeeeEEec
Q 024676 155 HSDQTILSSCTDSGGVRLWDARSGKIV-QTL---ETK---SPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~---~~~---~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~ 226 (264)
+++.+ +++++-|..+++|...+|+-. ..+ .++ .+-.-+. +.+. .++..-.++.+.++++-.++.++.+..
T Consensus 256 Sd~~~-l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 256 SDARY-LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred ccchh-hhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 87665 455566689999999887632 111 111 1111122 2222 232233346777777777777766665
Q ss_pred CCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 227 PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 227 ~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+.. ..+..+.++. +...+|+-|+.++-|-..
T Consensus 334 h~k~i~c~~~~~~f-q~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 334 HLKRINCAAYRPDF-EQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ccceeeEEeecCch-hhhhccccCCcccccccc
Confidence 533 2333444443 446788889999988653
No 156
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=138.78 Aligned_cols=240 Identities=18% Similarity=0.170 Sum_probs=180.3
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC------ceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFE-GHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~------~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
++|++.|++|.|+. ++++||+|+.|..+++|+++.. +.++... .|+..|.+++|.....++.+|..+++|
T Consensus 53 ~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 69999999999995 7999999999999999988642 3343332 377899999999999999999999999
Q ss_pred EEEeCCCCcEEEEeecCC---eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe--EeccCCCCeEEEEEecCCCeE
Q 024676 86 KLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~ 160 (264)
.+-|+++.+.+..+.|.. .|+.+..+|..+++++.+.++.+.+||.+....... ...........+.|.|....+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999988888776 899999999999999999999999999876542222 222334456677788888889
Q ss_pred EEEeeCCCeEEEEECCCCc-eeEE------ecC-CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCcee-eeEEecC---
Q 024676 161 LSSCTDSGGVRLWDARSGK-IVQT------LET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGL-VKGYNMP--- 227 (264)
Q Consensus 161 ~~~~~~d~~v~iwd~~~~~-~~~~------~~~-~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~-~~~~~~~--- 227 (264)
+++.+..+.+.+||.+..+ .+.. ++. ...+.+..|+|+|.-+.+-. ..--.+||+-...+ +-.+..+
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 9999988999999998754 2211 111 23457788999997665544 33446778766433 2223211
Q ss_pred ----CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 228 ----CNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 228 ----~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
+...+.+|.. .+-+++||.+-.+++|.+
T Consensus 290 Y~N~~T~KS~~F~~--D~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 290 YCNIKTIKSMTFID--DYTVATGSDHWGIHIWKL 321 (609)
T ss_pred ceeeeeeeeeeeec--ceeeeccCcccceEEEec
Confidence 1222334443 455999999999999975
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.2e-18 Score=144.19 Aligned_cols=239 Identities=19% Similarity=0.251 Sum_probs=170.5
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLW 88 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iw 88 (264)
.+++||++.|.+|.-.| .|.+|++|+.||++|||.+.+|.+++++.- .+.|.+|+|.|.... ++..+....+-|-
T Consensus 394 lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence 45689999999997775 899999999999999999999999887652 347999999986542 2222223334444
Q ss_pred eCCCC--------------------------------------cEEEEeecCCeEEEEEECCCCCEEEEeeCC---CcEE
Q 024676 89 DALTG--------------------------------------DEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILR 127 (264)
Q Consensus 89 d~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~ 127 (264)
+..-| .....+.|.++|+.+.||..|.+|++...+ ..+.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 012344577889999999999999987653 4577
Q ss_pred EeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCc-EEEEe
Q 024676 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGR-YITTA 205 (264)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~-~l~~~ 205 (264)
++++.+...+ ..+....+.+..+.|.|....++ .++. ..|+|||+..++.+..+... ..+.+++++|+|. +++++
T Consensus 550 iHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lf-VaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLF-VATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEeccccccc-CchhhcCCceeEEEecCCCceEE-EEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 8888655433 23334566777777766555544 4455 78999999988777666544 4588999999985 45566
Q ss_pred CCCcEEEEECCCc-eeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 206 DGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 206 ~~~~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
-++.+..+|+.-. ++.++...+.. ..+.+++++ -.+|++|+.|+++.||.
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFH 678 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEe
Confidence 6899999998643 34445544443 345667765 46899999999999985
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2e-16 Score=134.39 Aligned_cols=246 Identities=32% Similarity=0.495 Sum_probs=181.9
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKL 87 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~i 87 (264)
....+|...|..+.|+| ++.++++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.+++
T Consensus 149 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 149 RTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred EEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 44578999999999996 7778888885 99999999999888889999999999999999987 6666699999999
Q ss_pred EeCCCCcEEE-Eee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 88 WDALTGDEKH-SFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 88 wd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
||...+.... .+. |...+ ...|+|++..+++++.|+.+++|+++...........+...+.++.+.|....+++ ++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-ee
Confidence 9988777666 333 44443 33799999889999999999999987554312222345678888888885666665 66
Q ss_pred CCCeEEEEECCCCceeEEec--CC-CCEEEEEEcCCCcE-EEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCC
Q 024676 166 DSGGVRLWDARSGKIVQTLE--TK-SPVTSAEVSRDGRY-ITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~--~~-~~v~~~~~s~~~~~-l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (264)
.|+.+++||.++........ .+ ..+..+.+.+++.. ..+ ..++.+++|+....................+.+ .
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 381 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D- 381 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-
Confidence 66889999999887665543 33 35888888434233 344 356889999998776322222222234555555 4
Q ss_pred CEEEE-ecCCCeEEEEEcCccee
Q 024676 241 NIFIA-GGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 241 ~~~~~-gs~d~~v~vwd~~~g~~ 262 (264)
..+.. ++.++.+.+|+......
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CCEEEEecCCCceEEEecccCee
Confidence 44444 89999999999887654
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.9e-16 Score=134.53 Aligned_cols=247 Identities=26% Similarity=0.453 Sum_probs=183.9
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-eEEeeeCCc-CCEEEEEE-CCCCc-EEEEe-cCCCeE
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHK-GAVWSCCL-DANAL-FSASG-SADFTA 85 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~~H~-~~V~~v~~-~~~~~-~l~s~-s~D~~v 85 (264)
...+|...+..+.|.+ .+..++.++.|+.+.+|+...+. .+..+.++. ..+..+.+ .+++. .++.. ..|+.+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 3468999999999996 77888999999999999998886 667777644 36777777 77776 55544 449999
Q ss_pred EEEeCCC-CcEEE-EeecCCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676 86 KLWDALT-GDEKH-SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (264)
Q Consensus 86 ~iwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (264)
++||... ..... ...|...|..+.++|+++.+++++. |+.+++|++..+.. ......|...+.+++|.+.+..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-LSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-EEeeccCCCceEEEEEcCCcceEEE
Confidence 9999987 44333 4458888999999999998888885 99999999976333 2333347789999999976665666
Q ss_pred EeeCCCeEEEEECCCCceeE-EecCCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCcee-eeEEecC-CCCceeeEcCC
Q 024676 163 SCTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPK 238 (264)
Q Consensus 163 ~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~-~~~~~~~-~~~~~~~~~~~ 238 (264)
+++.|+.|++||.+.+.... .+..+.......++|++.+++ ++.++.+++|+++.... +..+..+ .......+.|
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 294 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP- 294 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-
Confidence 66888999999999887776 455443322227999986655 56689999999986654 4444222 2334455666
Q ss_pred CCCEEEEecCCCeEEEEEcCccee
Q 024676 239 LGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 239 ~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
.+..+++++.|+.+++||..++..
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCce
Confidence 467777799999999998876653
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=6.3e-17 Score=134.01 Aligned_cols=235 Identities=19% Similarity=0.247 Sum_probs=172.3
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE---EeeeCC-cCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~---~~~~~H-~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
+.|....|+|+ |-+.+++.++ +.+.+|+.+++.+. ..|+.+ +.-|.+++|.+++.- +||..+|++.||+..+
T Consensus 201 e~v~~a~FHPt--d~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 201 EVVFLATFHPT--DPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGT 276 (626)
T ss_pred ceEEEEEeccC--CCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCC
Confidence 45668999995 4567777765 56789999988654 457665 467999999999875 7999999999999876
Q ss_pred Cc-EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE-------------------------------
Q 024676 93 GD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE------------------------------- 140 (264)
Q Consensus 93 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~------------------------------- 140 (264)
.. .++...|...|.+++.-.++.+ ++|+.|++|-.||-+-......+
T Consensus 277 ~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 277 NRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred ceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 54 2334478999999999999975 56999999999983211000000
Q ss_pred --------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEE
Q 024676 141 --------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKF 212 (264)
Q Consensus 141 --------~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i 212 (264)
...|..+.+.++..| ...++++|+.|+++++|+ ..+.+.+.....+..++.|+|.|..+++...+.--+
T Consensus 356 ~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 356 LENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFV 432 (626)
T ss_pred ecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEE
Confidence 011223445555443 445677889999999999 566777777778999999999994444445677778
Q ss_pred EECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
.|.++...+....-.++.....+.| .|.+||.||.|+.|++|.++.+
T Consensus 433 ~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 433 LDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCC
Confidence 8999877666555555555566666 6999999999999999988643
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.5e-18 Score=133.41 Aligned_cols=192 Identities=15% Similarity=0.229 Sum_probs=145.6
Q ss_pred EEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676 64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG 142 (264)
Q Consensus 64 V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~ 142 (264)
..++.|++-|.++|.|..||.|-|||+.+....+.+ .|-.||.+++|+++|+.|+|+|.|..|++||+.++....+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 678999999999999999999999999987755554 488999999999999999999999999999999888655544
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC--ceeEEecC---CCCEEEEEEcCCCcEEEEeC-CCcEEEEECC
Q 024676 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLET---KSPVTSAEVSRDGRYITTAD-GSSVKFWDAN 216 (264)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~ 216 (264)
...+++.+.|.|.....++++--+..-.+-++..+ +++..-.. +.......|.+-|+++.++. -|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 45689999999877665554443344444444432 22211111 11222345888999988776 4899999999
Q ss_pred CceeeeEEecCC-C-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 217 HFGLVKGYNMPC-N-TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 217 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+.+++..+.+.. . ...+.+ +..|+.|+.-.+|+.||.|+..
T Consensus 184 t~e~vas~rits~~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIV-SRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeeeeechheeeeEEEE-eccCcEEEEecCCceEEEEehh
Confidence 999999998754 3 334444 4469999999999999999864
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.1e-17 Score=139.91 Aligned_cols=236 Identities=17% Similarity=0.278 Sum_probs=168.9
Q ss_pred Eeec-cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 11 VCHG-HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 11 ~~~~-h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
+.+| ..+.|-+|+|+ +|..|.+.+.+|+|.-||+.+++.+..++.-.++|++++.+|.+..++.|+.||.+.+.+
T Consensus 63 vi~g~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred EEecCCCCceeeEEEc----cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 3455 44588899999 456788999999999999999999888888889999999999999999999999777777
Q ss_pred CCCCcEEEE--e-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC---eEecc----CCCCeEEEEEecCCCe
Q 024676 90 ALTGDEKHS--F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGN----SSGSIRTVAWLHSDQT 159 (264)
Q Consensus 90 ~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~----~~~~i~~~~~~~~~~~ 159 (264)
...+..... + ..+..+.++.|+|++..+++|+.|+.|++||..++.... ++... ...-++++.+.. +.
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~- 216 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DS- 216 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cC-
Confidence 776654332 2 245789999999999999999999999999998765433 01111 223467777774 33
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCc-e---eeeEEecCCC-Cce
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHF-G---LVKGYNMPCN-TES 232 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~-~---~~~~~~~~~~-~~~ 232 (264)
.++++...|+|++||...+..++.+. +...|.+++.++++..+ .++-|+.|--+...+. . .......+.+ ..+
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 45566667999999999999887775 45679999999997554 4555765544444322 2 2222222222 222
Q ss_pred eeEcCCCCCEEEEecCCCeEEEE
Q 024676 233 ASLEPKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~v~vw 255 (264)
.+.. +..+++||.|..+.+=
T Consensus 297 ~av~---~~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 297 MAVI---ENALISGGRDFTLAIC 316 (691)
T ss_pred eeee---cceEEecceeeEEEEc
Confidence 3322 3367777777666553
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.5e-17 Score=128.80 Aligned_cols=200 Identities=18% Similarity=0.292 Sum_probs=143.0
Q ss_pred eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc----EEEEe-ecCCeEEEEEECC--CCCEEEEeeCCCcEEEee
Q 024676 58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD----EKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFD 130 (264)
Q Consensus 58 ~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d 130 (264)
.+|.+-|+++.|.+-|+++||||.|++|+|||..... +...+ .|...|..+.|.+ -|+.+++|+.|+++++|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999975432 22233 3788888888844 589999999999999997
Q ss_pred CC-----CCCCC---CeEeccCCCCeEEEEEecCC-CeEEEEeeCCCeEEEEECCCCc------eeEEec--------CC
Q 024676 131 LN-----RPDAP---PREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGK------IVQTLE--------TK 187 (264)
Q Consensus 131 ~~-----~~~~~---~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~------~~~~~~--------~~ 187 (264)
-. ..... ...+....+.+..+.|.|.. +..+++++.||.+|||+.-.-- .++.++ .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 41 11111 12334556789999998764 4468889999999999875432 222222 34
Q ss_pred CCEEEEEEcCCC---cEEEEeCCC------cEEEEECCCc----eeeeEEe-cCCCCceeeEcCCCC---CEEEEecCCC
Q 024676 188 SPVTSAEVSRDG---RYITTADGS------SVKFWDANHF----GLVKGYN-MPCNTESASLEPKLG---NIFIAGGEDM 250 (264)
Q Consensus 188 ~~v~~~~~s~~~---~~l~~~~~~------~i~iwd~~~~----~~~~~~~-~~~~~~~~~~~~~~~---~~~~~gs~d~ 250 (264)
.+..|+.|+|.- .+|+.+.+. .+.||..... ..+..+. .......++|.|+.| +++++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 567888898753 466666554 7888876432 2233332 345566788888766 5789999999
Q ss_pred eEEEEEcC
Q 024676 251 WVHVFDFH 258 (264)
Q Consensus 251 ~v~vwd~~ 258 (264)
|+||+++
T Consensus 250 -v~I~~v~ 256 (361)
T KOG2445|consen 250 -VRIFKVK 256 (361)
T ss_pred -EEEEEEe
Confidence 9999986
No 164
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=2.4e-18 Score=147.64 Aligned_cols=204 Identities=20% Similarity=0.236 Sum_probs=158.9
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCC--cEEEEecCCCeEEEE
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA--LFSASGSADFTAKLW 88 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~--~~l~s~s~D~~v~iw 88 (264)
...|..+|.||.|+-.-...++||++|.|+.|.|+|+..+ .+++++.+|+..|.++.|...+ ..+++++.|+.++ +
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-F 575 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-F 575 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-e
Confidence 3689999999999975555689999999999999999654 5788999999999999998766 6689999999775 4
Q ss_pred eCCCC--cEEEEeec-----CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec--cCCCCeEEEEEecCCCe
Q 024676 89 DALTG--DEKHSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 89 d~~~~--~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 159 (264)
++... ......+| ...++.+++.|+.+++++++.|+.|++||+.+++......+ .+.+....+..-|.+-+
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY 655 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE
Confidence 54431 11111122 23578899999999999999999999999998875544433 24566777776665554
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCC
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANH 217 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~ 217 (264)
++.+| .|+++.++|..+|+++..+-++ ..|+.+.|.+|-++|.+ +.|+-|-+|.+..
T Consensus 656 ~atSc-sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 656 LATSC-SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEee-cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 44444 5699999999999999877554 55999999999887654 6689999999853
No 165
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=130.35 Aligned_cols=194 Identities=20% Similarity=0.322 Sum_probs=145.2
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC--
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-- 92 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-- 92 (264)
|.-+|-.+--. ..+.+++++|.|..|.+|++. |+.++.+......-+..+++|+|.++++++-.--|++|+.--
T Consensus 186 h~v~~i~iGiA---~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 186 HQVDIINIGIA---GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK 261 (420)
T ss_pred cccceEEEeec---CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence 55555444333 467899999999999999998 888888766555566788999999999999988999998632
Q ss_pred -Cc---EEEEe---ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC----CCCe------EeccCCCCeEEEEEec
Q 024676 93 -GD---EKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD----APPR------EVGNSSGSIRTVAWLH 155 (264)
Q Consensus 93 -~~---~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~----~~~~------~~~~~~~~i~~~~~~~ 155 (264)
|. ..+.+ .|...|...+|++++..+++.+.||++|+||.+-.. -+.. ..-...+...-+.++|
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence 21 22222 388899999999999999999999999999985211 1100 0001123334567788
Q ss_pred CCCeEEEEeeCCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCCcEEEEeCCCcEEEEE
Q 024676 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWD 214 (264)
Q Consensus 156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd 214 (264)
+++.+.++ .. ..++++..++++....++ +...|.++.|+++|+++++..|+.+++.-
T Consensus 342 ~g~~lA~s-~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 342 SGDSLAVS-FG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred CCcEEEee-cC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 77755544 33 579999999998776664 45679999999999999998899988865
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=1.3e-17 Score=129.51 Aligned_cols=196 Identities=16% Similarity=0.256 Sum_probs=154.1
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---eEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDA 90 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~ 90 (264)
+-.|++.-.|+...| +++.++|-|-++.|||++++. ....+-.|...|+.++|..++ ..+||.+.||+||++|+
T Consensus 149 ~~aPlTSFDWne~dp--~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDP--NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cCCcccccccccCCc--ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 556888888887544 799999999999999999873 345678899999999999866 56799999999999999
Q ss_pred CCCcE-EEEee---cCCeEEEEEECCCC-CEEEEeeCC-CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 91 LTGDE-KHSFE---HKHIVRACAFSEDT-HLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 91 ~~~~~-~~~~~---~~~~v~~~~~~~~~-~~l~s~~~d-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
+..+- ...++ ...+..-++|++++ +++++-..| ..|.+.|++.+..+...+..|++.|+.++|.|.....+++|
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 87642 22233 24567788898865 556664444 67999999988877777888999999999999999999999
Q ss_pred eCCCeEEEEECCCC------ceeEEecCCCCEEEEEEcCC-CcEEEEeCCCcEEE
Q 024676 165 TDSGGVRLWDARSG------KIVQTLETKSPVTSAEVSRD-GRYITTADGSSVKF 212 (264)
Q Consensus 165 ~~d~~v~iwd~~~~------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~i 212 (264)
++|.++.|||+.+- .++..+.....|+.+.|+|. +..++...+..+.|
T Consensus 307 GDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 307 GDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred CCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence 99999999999752 12334455678999999965 46777776666554
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.5e-17 Score=138.83 Aligned_cols=205 Identities=24% Similarity=0.303 Sum_probs=154.8
Q ss_pred EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE-EEEeeCCCcEEEeeCCC
Q 024676 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNR 133 (264)
Q Consensus 55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~d~~~ 133 (264)
..|.||++.|+++...+.|..+++|+.||+||||.+.++.++.++.....|.+++|+|.+.+ ++++..+.++.+.+-.-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 35689999999999999999999999999999999999999999999999999999996543 33444444454443211
Q ss_pred CCC------------------------------------CCeEeccCCCCeEEEEEecCCCeEEEEeeCC--CeEEEEEC
Q 024676 134 PDA------------------------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDA 175 (264)
Q Consensus 134 ~~~------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~v~iwd~ 175 (264)
+.. -....-.+..++..+.|.-.|.++.+++.++ ..|.|.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 100 0001112345677788877777766655533 46889999
Q ss_pred CCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEEEEecCCCeEE
Q 024676 176 RSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVH 253 (264)
Q Consensus 176 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~v~ 253 (264)
.+++.+..+. .+..+..+.|+|...++..+..+.|+|||+...+.++.....+... ..+.++ .|+-|+.|+.|+.+.
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMC 632 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeE
Confidence 8887766663 4567999999999877777777899999999988888776655544 456666 588999999999999
Q ss_pred EEEcCcc
Q 024676 254 VFDFHTG 260 (264)
Q Consensus 254 vwd~~~g 260 (264)
.||++-+
T Consensus 633 WfDldls 639 (733)
T KOG0650|consen 633 WFDLDLS 639 (733)
T ss_pred EEEcccC
Confidence 9998754
No 168
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.8e-18 Score=140.71 Aligned_cols=213 Identities=20% Similarity=0.248 Sum_probs=157.1
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDA--NALFSASGSADFTAK 86 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~--~~~~l~s~s~D~~v~ 86 (264)
..+.||++.|+||+|+. +|.+|++||.|--+.|||.-..+++..+. ||.+.|.++.|-| ....++||+.|+.|+
T Consensus 44 ~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34579999999999995 99999999999999999998777777765 8999999999987 456789999999999
Q ss_pred EEeCCCCc----------EEEEe-ecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEec---------cCC
Q 024676 87 LWDALTGD----------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG---------NSS 145 (264)
Q Consensus 87 iwd~~~~~----------~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~---------~~~ 145 (264)
++|+.... ..+.+ .|...|-.++..|++ +.+.+++.||+|+-+|++.+..-..... ..-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99987421 12222 367778888889987 8888999999999999986422111100 001
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECCC--------Cc----------eeEEecC-----C--------CCEEEEE
Q 024676 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--------GK----------IVQTLET-----K--------SPVTSAE 194 (264)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--------~~----------~~~~~~~-----~--------~~v~~~~ 194 (264)
-+..++..+|...++++.|+.|-..++||.|. +. |+.-+.. . .-++-++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 24567888999999999998889999999431 11 2222210 0 1145678
Q ss_pred EcCCCcEEEEe-CCCcEEEEECCCceeeeEEe
Q 024676 195 VSRDGRYITTA-DGSSVKFWDANHFGLVKGYN 225 (264)
Q Consensus 195 ~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~ 225 (264)
|+|||.-+..+ .+..|.++|+...+....|.
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 99999765554 45689999998766554443
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1e-16 Score=139.33 Aligned_cols=244 Identities=15% Similarity=0.086 Sum_probs=171.8
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEe----eeCCcCCEEEEEECCCC--cEEEEecCCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGT----FEGHKGAVWSCCLDANA--LFSASGSADF 83 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~----~~~H~~~V~~v~~~~~~--~~l~s~s~D~ 83 (264)
..-=..+|.++.|+|..| ++||.|..+|+|-+||...+.. ... ...|+.+|..+.|..+- .-++|+|.||
T Consensus 238 ~~~~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG 315 (555)
T KOG1587|consen 238 VLESPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG 315 (555)
T ss_pred EEecCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC
Confidence 333456899999999654 6999999999999999987754 222 24599999999997544 3488999999
Q ss_pred eEEEEeCCCCcE------EEEee-------cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCC-------CeEec
Q 024676 84 TAKLWDALTGDE------KHSFE-------HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP-------PREVG 142 (264)
Q Consensus 84 ~v~iwd~~~~~~------~~~~~-------~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~-------~~~~~ 142 (264)
.|+.|++.--.. ..... ....++.+.|.+ +...++.|+.+|.|..-+....+.. .....
T Consensus 316 ~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 316 SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence 999998653211 11111 123578888988 4466778888998876332221111 22334
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCceeEEecCCC-CEEEEEEcCCC-cEEEEe-CCCcEEEEECCC-
Q 024676 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETKS-PVTSAEVSRDG-RYITTA-DGSSVKFWDANH- 217 (264)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~~-~v~~~~~s~~~-~~l~~~-~~~~i~iwd~~~- 217 (264)
.|.+.+.++.++|=...++.+++ |-+|+||... ...++..+..+. .+..++|||-- ..+++. .+|.+.|||+..
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 56788999999887777777777 5899999987 566666665443 49999999985 334444 479999999964
Q ss_pred -ceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 218 -FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
.+++.+...........+.+..|+.+++|.+.|.+++|++.
T Consensus 475 ~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 475 DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 45555554443333333444459999999999999999984
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=3.1e-17 Score=129.16 Aligned_cols=219 Identities=19% Similarity=0.317 Sum_probs=158.8
Q ss_pred CCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC--CcCC---EEEEEECCCCcEEEEecCCCeEEEEeC-CCCc---EEE
Q 024676 27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGA---VWSCCLDANALFSASGSADFTAKLWDA-LTGD---EKH 97 (264)
Q Consensus 27 ~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H~~~---V~~v~~~~~~~~l~s~s~D~~v~iwd~-~~~~---~~~ 97 (264)
..|+-+++++.++|.-|.+||.-+|++...+++ |.+. ..+++|+|||.+|..| ....||++|+ +.|. ...
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence 347788999999999999999999999888875 5443 3789999999998754 5678999998 5554 222
Q ss_pred Eeec-----CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 98 SFEH-----KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 98 ~~~~-----~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
++.+ ...+.+++++| +.+.++.++..+.+-+|.-...+ +....+.|.+.|+.++|.+++..+++++--+.+|.
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL 276 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence 3333 45678899999 55688889999998888865544 45566789999999999999988888777778999
Q ss_pred EEECCCC-ceeEEecCC----CCEEEEEEcCCCcEEEEe-CCCcEEEEECCC-ceeeeEEecCCC-CceeeEcCCCCCEE
Q 024676 172 LWDARSG-KIVQTLETK----SPVTSAEVSRDGRYITTA-DGSSVKFWDANH-FGLVKGYNMPCN-TESASLEPKLGNIF 243 (264)
Q Consensus 172 iwd~~~~-~~~~~~~~~----~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (264)
.||+|.- ..+..+..+ +.-......|.+++|+++ .+|.|++||+.+ ++.+..+..... .+..+++|- =.++
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpil 355 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPIL 355 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-ccee
Confidence 9999864 344444322 222335667999999987 589999999988 454555543222 233444442 3455
Q ss_pred EEecC
Q 024676 244 IAGGE 248 (264)
Q Consensus 244 ~~gs~ 248 (264)
+++|.
T Consensus 356 atssG 360 (406)
T KOG2919|consen 356 ATSSG 360 (406)
T ss_pred eeccC
Confidence 55554
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=136.23 Aligned_cols=212 Identities=19% Similarity=0.248 Sum_probs=164.7
Q ss_pred cceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC
Q 024676 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD 82 (264)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D 82 (264)
..|+.+.....|+... .++.-..++++++|+..+..|.|.+-...+++++.+|+ -.+.|..++|+.|++.++..+.+
T Consensus 289 ~ak~~k~~~~~g~e~~--~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEK--SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred ccccccccCCCCcccc--hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence 3455555555666643 34455567899999999999999999999999988887 45789999999999999888899
Q ss_pred CeEEEEeCCCCcEEEEeecCCeE--EEEEECCCCCEEEEeeCCCcEEEeeCCCCC-----CCCeEeccCCCCeEEEEEec
Q 024676 83 FTAKLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRIFDLNRPD-----APPREVGNSSGSIRTVAWLH 155 (264)
Q Consensus 83 ~~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~i~~~~~~~ 155 (264)
|.|.+||+++..+++.+.....| +.+|.++++.+|++|+..|.++|||.++-. .+...+.+....|..++|+|
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 99999999999999998877766 457778999999999999999999965321 12223344556789999998
Q ss_pred CCCeEE-EEeeCCCeEEEEECCCCceeEEecCC----CCEEEEEEcCCCcEEEEeC-CCcEEEEECCC
Q 024676 156 SDQTIL-SSCTDSGGVRLWDARSGKIVQTLETK----SPVTSAEVSRDGRYITTAD-GSSVKFWDANH 217 (264)
Q Consensus 156 ~~~~~~-~~~~~d~~v~iwd~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~ 217 (264)
+.+.+. ++-..+..+|+-=+.+..+...+... .-++|++|||++-+++.+. ++.+.+|.+..
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeecc
Confidence 766542 22334568999988888887777543 3589999999998888776 68999998754
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=150.84 Aligned_cols=243 Identities=18% Similarity=0.278 Sum_probs=178.1
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~ 91 (264)
+.||...|+|+.|.- .|.++++||.|..++||+.+++.+++...||++.|..++.+....+++++|.|..|++|.+.
T Consensus 186 LlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 479999999999984 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC-CCCC-CCeE------------eccC------------
Q 024676 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDA-PPRE------------VGNS------------ 144 (264)
Q Consensus 92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~-~~~~-~~~~------------~~~~------------ 144 (264)
.+.++..+ .|+..|++++|+|-. +.+.|+++++||.+ .... .... +...
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 99877765 489999999999965 67899999999976 1100 0000 0000
Q ss_pred CC---CeEEEEEe----------cCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEE--EEeCCC
Q 024676 145 SG---SIRTVAWL----------HSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI--TTADGS 208 (264)
Q Consensus 145 ~~---~i~~~~~~----------~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l--~~~~~~ 208 (264)
.. ...+.+|. .+...+.+++-.+-.+.+|.+.+|+.++... +..++.-+.++|=+..+ .++-||
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence 00 00111111 1111222233334567889999998777654 44568889999866544 356689
Q ss_pred cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
..-|||+-.+.+++.|..+.....-..++.+|..++..-.-|.+++..+..|+
T Consensus 419 st~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 419 STIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999999988887653333323333457778877777888888765543
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=7.4e-17 Score=125.25 Aligned_cols=244 Identities=20% Similarity=0.238 Sum_probs=174.2
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCC-------CcEEEeCCCC---------ceEEeee-CCcCCEEEEEECCCC
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDS-------SPMLRNGETG---------DWIGTFE-GHKGAVWSCCLDANA 73 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~-------~v~i~~~~~~---------~~~~~~~-~H~~~V~~v~~~~~~ 73 (264)
++.-|.++|+.|+-+|. +.+.|+|+..|. .+-||.+... +.+..+. .|-+.|.++.|.|++
T Consensus 58 vf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 44568899999999994 567888876642 2467876432 2233343 345689999999999
Q ss_pred cEEEEecCCCeEEEEeCCCCcE-EEEe------ecCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC
Q 024676 74 LFSASGSADFTAKLWDALTGDE-KHSF------EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNS 144 (264)
Q Consensus 74 ~~l~s~s~D~~v~iwd~~~~~~-~~~~------~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~ 144 (264)
..+++.. |..|.+|++..+.. .+.+ ++....++-.|+| +++.++ ...|+++..||+++..........|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhh
Confidence 9988776 78899999987754 3332 2455677888998 555554 5578999999999766555555567
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEecCC-CCEEEEEEcCCC-cE-EEEeCCCcEEEEECCCce-
Q 024676 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLETK-SPVTSAEVSRDG-RY-ITTADGSSVKFWDANHFG- 219 (264)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~~-~~-l~~~~~~~i~iwd~~~~~- 219 (264)
...+..+.|+|+-++++++|++|+.|||||.|+-+ ++.++..+ ..+-++.|+|.. ++ |++++|..|.+|....-.
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 77899999999999999999999999999999755 56666544 468899999864 34 455678889888753210
Q ss_pred ----------------------------eeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 220 ----------------------------LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 220 ----------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
.+.+|.-++. .....+++.+.=+|++=|.||.+.|=++.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1123322222 22455666666789999999999886653
No 174
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=3.1e-17 Score=140.28 Aligned_cols=201 Identities=22% Similarity=0.268 Sum_probs=151.0
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCC-----cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSS-----PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~-----v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
-||--+|.+|+-+| +|+++|++.+... |++|+..+=..++.+.+|+-.|..++|+||+++|++.|+|+++.+
T Consensus 522 YGHGyEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 522 YGHGYEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred ccCceeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 59999999999886 8999999977654 677887665556679999999999999999999999999999999
Q ss_pred EeCCCCcE-----EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC--CCCCe-EeccCCCCeEEEEEecCCC-
Q 024676 88 WDALTGDE-----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPR-EVGNSSGSIRTVAWLHSDQ- 158 (264)
Q Consensus 88 wd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~-~~~~~~~~i~~~~~~~~~~- 158 (264)
|....... .....|...|..+.|+|++++++|+|.|+++++|..... ....+ ....+...++.+++.+...
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence 98744321 112348888999999999999999999999999998765 22222 2344667888898876443
Q ss_pred ---eEEEEeeCCCeEEEEECCCCcee-----EEe--------cCCCCEEEEEEcCC---------C-c-EEEEeCCCcEE
Q 024676 159 ---TILSSCTDSGGVRLWDARSGKIV-----QTL--------ETKSPVTSAEVSRD---------G-R-YITTADGSSVK 211 (264)
Q Consensus 159 ---~~~~~~~~d~~v~iwd~~~~~~~-----~~~--------~~~~~v~~~~~s~~---------~-~-~l~~~~~~~i~ 211 (264)
.+++.|...|.|.+|........ ..+ .+...|+.+.|.|- + . +.++++|..+|
T Consensus 679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr 758 (764)
T KOG1063|consen 679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVR 758 (764)
T ss_pred cccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeE
Confidence 37889999999999985421110 111 12245888888864 1 2 24556788899
Q ss_pred EEECC
Q 024676 212 FWDAN 216 (264)
Q Consensus 212 iwd~~ 216 (264)
++++.
T Consensus 759 i~nv~ 763 (764)
T KOG1063|consen 759 IFNVD 763 (764)
T ss_pred Eeecc
Confidence 98753
No 175
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=1.4e-16 Score=137.75 Aligned_cols=210 Identities=19% Similarity=0.179 Sum_probs=143.7
Q ss_pred CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE
Q 024676 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (264)
Q Consensus 40 d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (264)
+..+.+||..... .+.+..|...+.+.+|+||++.++..+.+ ..|.+||+.+++...............|+|+++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4678889886444 55677788899999999999998877654 4799999988764333222333456899999998
Q ss_pred EEEee-CCCcEEEe--eCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC--CceeEEecCCCCEE
Q 024676 117 LLTGG-FEKILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--GKIVQTLETKSPVT 191 (264)
Q Consensus 117 l~s~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~v~ 191 (264)
|+.++ .++.+.+| |+.++. ...+..+...+....|+|++..++.++..++..+||++.. +.. ..+.... .
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~ 336 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--Y 336 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--C
Confidence 88764 67776665 554443 2334344556777899998887777766678888887643 322 2222222 4
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 192 SAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 192 ~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
+..++|||++++......+.+||+.+++... +..........+.| ++++++.++.++.+++|.+
T Consensus 337 ~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~-lt~~~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 337 SAQISADGKTLVMINGDNVVKQDLTSGSTEV-LSSTFLDESPSISP-NGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CccCCCCCCEEEEEcCCCEEEEECCCCCeEE-ecCCCCCCCceECC-CCCEEEEEEcCCCceEEEE
Confidence 5789999998876554567779998875432 21112224456777 5899999999998888874
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=8.4e-15 Score=122.69 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=152.7
Q ss_pred CCeeeeEeccCCCCCeEEEEEe-CCCCcEEEeCC-CCce--EEeeeCCcCCEEEEEECCCCcEEEEec-CCCeEEEEeCC
Q 024676 17 RPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGE-TGDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDAL 91 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s-~d~~v~i~~~~-~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s-~D~~v~iwd~~ 91 (264)
+....+.++| ++++|++++ .++.+.+|+.. ++++ +.... ..+....++++|+++++++++ .++.|.+|++.
T Consensus 35 ~~~~~l~~sp---d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISP---DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECC---CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 3445677775 888886664 57788889886 4443 22222 223456799999999887655 48899999986
Q ss_pred C-C---cEEEEeecCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCC----e-EeccCCCCeEEEEEecCCCeEE
Q 024676 92 T-G---DEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP----R-EVGNSSGSIRTVAWLHSDQTIL 161 (264)
Q Consensus 92 ~-~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~----~-~~~~~~~~i~~~~~~~~~~~~~ 161 (264)
+ + .......+......++++|+++++++++ .++.|.+||+++..... . ...........+++.|++..++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 4 2 1223333334467788999999887665 46999999997532111 0 1111223456788888888777
Q ss_pred EEeeCCCeEEEEECCC--Cc--eeEEecC-------CCCEEEEEEcCCCcEEEEeC--CCcEEEEECCCc----eeeeEE
Q 024676 162 SSCTDSGGVRLWDARS--GK--IVQTLET-------KSPVTSAEVSRDGRYITTAD--GSSVKFWDANHF----GLVKGY 224 (264)
Q Consensus 162 ~~~~~d~~v~iwd~~~--~~--~~~~~~~-------~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~----~~~~~~ 224 (264)
++...+++|.+||++. ++ .+..+.. ......+.++|+++++.++. ++.|.+|++... +.+...
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 7766679999999973 33 2333321 11233588999999876653 578999998543 233433
Q ss_pred ecCCCCceeeEcCCCCCEEEE-ecCCCeEEEEEcC
Q 024676 225 NMPCNTESASLEPKLGNIFIA-GGEDMWVHVFDFH 258 (264)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~-gs~d~~v~vwd~~ 258 (264)
.....+..+.++++ |+++++ ...+++|.+|+++
T Consensus 271 ~~~~~p~~~~~~~d-g~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 271 PTETQPRGFNIDHS-GKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eccccCCceEECCC-CCEEEEEEccCCcEEEEEEc
Confidence 33445566778875 665555 4459999999764
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.9e-16 Score=141.21 Aligned_cols=241 Identities=15% Similarity=0.260 Sum_probs=160.9
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCC---cCCEEEEEECC--CCcEEEEecCCCeEEEEeCCC
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH---KGAVWSCCLDA--NALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H---~~~V~~v~~~~--~~~~l~s~s~D~~v~iwd~~~ 92 (264)
+-.-+.|+|..| .++++.....|+|||-+.++.+..|..+ ...|..+.+-. |..++.+|+.||.||||+-..
T Consensus 1066 ~pk~~~~hpf~p---~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP---QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCceeeecCCCc---eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 345678888766 5677776667899999999987777654 34677787754 456789999999999997433
Q ss_pred C-----cEEEEee--------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676 93 G-----DEKHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 93 ~-----~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
. +.+..+. ..+.-..+.|.++..+|++++.-+.|++||..+..............++.+.-....+.
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 1222221 01112456788887788888888999999997654332222233444555544434567
Q ss_pred EEEEeeCCCeEEEEECCCCce---eEEec-CCC--CEEEEEEcCCC--cEEEEeCCCcEEEEECCCceeeeEEec-----
Q 024676 160 ILSSCTDSGGVRLWDARSGKI---VQTLE-TKS--PVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNM----- 226 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~---~~~~~-~~~--~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~----- 226 (264)
++++|..||.|++||.|.... +..+. ++. +|..+.+.++| .+++++.+|.|++||+|.......+.+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 888888899999999986542 23332 333 38888888876 456677899999999987432222222
Q ss_pred -CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceeeC
Q 024676 227 -PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264 (264)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i~ 264 (264)
.........+. ...++++|+. +.|.||++ .|++++
T Consensus 1303 yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~-~G~~l~ 1338 (1387)
T KOG1517|consen 1303 YGSALTALTVHE-HAPIIASGSA-QLIKIYSL-SGEQLN 1338 (1387)
T ss_pred cCccceeeeecc-CCCeeeecCc-ceEEEEec-Chhhhc
Confidence 22233344444 5788999998 99999997 477653
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=7.4e-17 Score=137.79 Aligned_cols=237 Identities=17% Similarity=0.244 Sum_probs=168.2
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
.++||++.|++++|+. ||..+|+|+.|+.|++|+..- + +.++ .|.+.|.++.|.|-...++|++-.- .-+|.
T Consensus 48 tLKgHKDtVycVAys~---dGkrFASG~aDK~VI~W~~kl-E--G~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS 120 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAK---DGKRFASGSADKSVIIWTSKL-E--GILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWS 120 (1081)
T ss_pred ccccccceEEEEEEcc---CCceeccCCCceeEEEecccc-c--ceeeeccCCeeeEeecCchHHHhhhcchhh-ccccC
Confidence 3589999999999994 999999999999999998642 2 2232 3999999999999999999887553 55787
Q ss_pred CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCCC----eEEEEe
Q 024676 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQ----TILSSC 164 (264)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~----~~~~~~ 164 (264)
..+... ...+....+.+++|..+|++++-|-.+|+|.+-+-...+. .....+..+.++++++|+|..+ .++++.
T Consensus 121 ~~qK~V-~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 121 PEQKSV-SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hhhhhH-HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 654322 2222345688999999999999999999999987433222 2334466788999999998643 244444
Q ss_pred eCCCeEEEEECCCCceeE-EecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEe-cCCCCceeeEcCCCCC
Q 024676 165 TDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGN 241 (264)
Q Consensus 165 ~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 241 (264)
.-..++..+.+. |+.+. .-..+-...++.+.|||.|+ +++.++.+++|- |.+-.+.+.. ...-.-+....|+ ++
T Consensus 200 DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN-sQ 276 (1081)
T KOG1538|consen 200 DWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN-SQ 276 (1081)
T ss_pred eccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC-Cc
Confidence 555666666665 33332 22333456789999999886 456788888875 3333333331 2233345566675 88
Q ss_pred EEEEecCCCeEEEEEcC
Q 024676 242 IFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 242 ~~~~gs~d~~v~vwd~~ 258 (264)
+++.|..||++-.|++.
T Consensus 277 ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEEEccCeeehhhhH
Confidence 99999999999999864
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=2.2e-16 Score=127.57 Aligned_cols=124 Identities=23% Similarity=0.350 Sum_probs=102.8
Q ss_pred eeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC--------C-----C---ceEEeeeCCcCCEEEEE
Q 024676 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--------T-----G---DWIGTFEGHKGAVWSCC 68 (264)
Q Consensus 5 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~--------~-----~---~~~~~~~~H~~~V~~v~ 68 (264)
+++---.+..|...|++|+|+| +|..||+|+.++.+.+|-.. + . ...+.+.+|...|+.++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~ 130 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLA 130 (434)
T ss_pred eEEEeecccCCcceeEEEEEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhh
Confidence 4444445678999999999996 89999999999999999665 2 1 12356789999999999
Q ss_pred ECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676 69 LDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (264)
Q Consensus 69 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 131 (264)
|++++.++++++.|.++++||+..|.....+ .|.+.|..++|+|.++++++-+.|+..+.+.+
T Consensus 131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred ccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence 9999999999999999999999999877765 58888999999998888888777775554443
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.1e-17 Score=136.62 Aligned_cols=212 Identities=20% Similarity=0.263 Sum_probs=142.4
Q ss_pred ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----------ceEEeeeCCcCCEEEEEECCCC
Q 024676 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----------DWIGTFEGHKGAVWSCCLDANA 73 (264)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----------~~~~~~~~H~~~V~~v~~~~~~ 73 (264)
.++++.+.+++|.+||.|+...+ .+.++.+|+.||+|+.|++..+ ....+|.||.+.|+.+++++..
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~---n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~ 408 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPS---NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK 408 (577)
T ss_pred cceeeeEEEecccCceEEEEecC---CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc
Confidence 35677788899999999999985 7889999999999999954321 2356789999999999999999
Q ss_pred cEEEEecCCCeEEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEecc--C--
Q 024676 74 LFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGN--S-- 144 (264)
Q Consensus 74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~--~-- 144 (264)
.+|+++|.||++|+|+.....+ .++. ....-..+.+-.....+..++ ...+.+++.+.+... ..... .
T Consensus 409 ~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s--~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 409 DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS--FRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhh--cccccccchhhhhhhheeeccccCCCc
Confidence 9999999999999999766554 3332 111112222222110111111 112222222111111 11100 0
Q ss_pred ---CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCce
Q 024676 145 ---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG 219 (264)
Q Consensus 145 ---~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~ 219 (264)
...+..+.+.| +.-+..++..|+.|+++|..+++.++.... ...+.++++.|+|-+|.++ .|+.+++|.+..-.
T Consensus 486 ~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 486 PRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 11244455444 445677888999999999999999887754 4569999999999887765 58999999986555
Q ss_pred eee
Q 024676 220 LVK 222 (264)
Q Consensus 220 ~~~ 222 (264)
++.
T Consensus 565 ~~~ 567 (577)
T KOG0642|consen 565 CVL 567 (577)
T ss_pred eee
Confidence 443
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.3e-15 Score=118.49 Aligned_cols=242 Identities=17% Similarity=0.247 Sum_probs=170.8
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCC----CCcEEE--eCCCCceEEee-eCCcCCEEEEEECCCCc-----EEEEecCCCe
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKD----SSPMLR--NGETGDWIGTF-EGHKGAVWSCCLDANAL-----FSASGSADFT 84 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d----~~v~i~--~~~~~~~~~~~-~~H~~~V~~v~~~~~~~-----~l~s~s~D~~ 84 (264)
-++.++.|+-......+|+.||.- +.|.|- +.++++.+..- -.|.-++..+-|.|+.. +|||.+ | .
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-F 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-e
Confidence 367788888653345688888753 335553 44556554321 14889999999999863 456553 3 6
Q ss_pred EEEEeCCCCcE----EEE------eecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCC--CCeEeccCCCCeEEE
Q 024676 85 AKLWDALTGDE----KHS------FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTV 151 (264)
Q Consensus 85 v~iwd~~~~~~----~~~------~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~i~~~ 151 (264)
+|+|.+...+. ... -++..++++..|+. +-+++.+++-|-++.+||++++.. ...++-.|..++..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99999874221 111 12455788888887 667888999999999999998632 345666789999999
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCcee-EEecC---CCCEEEEEEcCCC-cEEEE-e-CCCcEEEEECCC-ceeeeE
Q 024676 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLET---KSPVTSAEVSRDG-RYITT-A-DGSSVKFWDANH-FGLVKG 223 (264)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~---~~~v~~~~~s~~~-~~l~~-~-~~~~i~iwd~~~-~~~~~~ 223 (264)
+|...+..++++++.||.||+||+|..+-- ..++. +.+...++++++. +++++ . +...|.|.|+|. ..++-.
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999877789999999999999999976531 12222 4567788888765 45543 3 457899999985 233444
Q ss_pred Eec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676 224 YNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 224 ~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
+.. ....+.+.+.|-....+.++|.|.++.+||+.+.
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 433 2345567788877889999999999999998653
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=2.9e-14 Score=119.47 Aligned_cols=223 Identities=12% Similarity=0.194 Sum_probs=146.8
Q ss_pred EEEeCCCCcEEEeCCC-Cc--eEEeeeCCcCCEEEEEECCCCcEEEE-ecCCCeEEEEeCCC-CcE--EEEeecCCeEEE
Q 024676 35 VSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANALFSAS-GSADFTAKLWDALT-GDE--KHSFEHKHIVRA 107 (264)
Q Consensus 35 ~t~s~d~~v~i~~~~~-~~--~~~~~~~H~~~V~~v~~~~~~~~l~s-~s~D~~v~iwd~~~-~~~--~~~~~~~~~v~~ 107 (264)
++...|+.|++|++.+ ++ .++.+. +.+....++++|++++|+. +..++.|.+|++.. +.. ............
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 4557799999999964 43 445554 3345667899999998754 45688999999863 332 222233334678
Q ss_pred EEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCe--EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE--
Q 024676 108 CAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-- 182 (264)
Q Consensus 108 ~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~-- 182 (264)
+.++|+++++++++. ++.+.+|++++...... ...........+++.|++..++++...++.|.+||+++...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 999999999998875 78999999864321111 1111222346677888888888888888999999998733221
Q ss_pred -----EecCCCCEEEEEEcCCCcEEEEe-C-CCcEEEEECCC----ceeeeEEec-CC------CCceeeEcCCCCCEEE
Q 024676 183 -----TLETKSPVTSAEVSRDGRYITTA-D-GSSVKFWDANH----FGLVKGYNM-PC------NTESASLEPKLGNIFI 244 (264)
Q Consensus 183 -----~~~~~~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~~----~~~~~~~~~-~~------~~~~~~~~~~~~~~~~ 244 (264)
..........+.++|+|+++..+ . ++.|.+|++.. .+.+..+.. +. ....+.++|+ +++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd-g~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD-GRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC-CCEEE
Confidence 12223446678999999887544 3 68999999963 233444432 11 1113556674 66666
Q ss_pred Ee-cCCCeEEEEEcCc
Q 024676 245 AG-GEDMWVHVFDFHT 259 (264)
Q Consensus 245 ~g-s~d~~v~vwd~~~ 259 (264)
++ ..++.|.+|++.+
T Consensus 244 v~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 244 ACDRTASLISVFSVSE 259 (330)
T ss_pred EecCCCCeEEEEEEeC
Confidence 65 4578999999754
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=133.60 Aligned_cols=209 Identities=19% Similarity=0.320 Sum_probs=148.2
Q ss_pred EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEEEECC--CCCEEEEeeCCCcEEEe
Q 024676 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSE--DTHLLLTGGFEKILRIF 129 (264)
Q Consensus 54 ~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~ 129 (264)
-+.+.||++-|++++|+.+|.+|+|||+|..+.|||....+.+..+. |...|.++.|-| +++++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35789999999999999999999999999999999988777766664 777899999988 67899999999999999
Q ss_pred eCCCC---------CCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeE------Ee-c---CCCC
Q 024676 130 DLNRP---------DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQ------TL-E---TKSP 189 (264)
Q Consensus 130 d~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~------~~-~---~~~~ 189 (264)
|+... +........|...+-.++-.|.+++.+.++++||+|+-+|+|... |-. .+ + .--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99742 112222334555566677778888899999999999999998622 111 11 0 1124
Q ss_pred EEEEEEcCCC-cEEE-EeCCCcEEEEECCC--------c----------eeeeEEec-CC-C-----------CceeeEc
Q 024676 190 VTSAEVSRDG-RYIT-TADGSSVKFWDANH--------F----------GLVKGYNM-PC-N-----------TESASLE 236 (264)
Q Consensus 190 v~~~~~s~~~-~~l~-~~~~~~i~iwd~~~--------~----------~~~~~~~~-~~-~-----------~~~~~~~ 236 (264)
..+++++|.. .+|+ ++++-..++||.|. + .+++.|.. +- + ..-..|.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 6688999876 3444 45677899999542 1 12333311 00 0 1123566
Q ss_pred CCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 237 PKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 237 ~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
|++.++|++-|. ..|+++|+..++.+
T Consensus 283 pNGtElLvs~~g-EhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 283 PNGTELLVSWGG-EHVYLFDVNEDKSP 308 (758)
T ss_pred CCCcEEEEeeCC-eEEEEEeecCCCCc
Confidence 765677777665 46999999877643
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5.1e-16 Score=126.04 Aligned_cols=191 Identities=22% Similarity=0.206 Sum_probs=139.4
Q ss_pred eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (264)
Q Consensus 20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 99 (264)
..++|++ +|..|++|+.||.+|||+-.+...+..+..|.+.|..+.|+||++++++-+.| ..+||++.++..++..
T Consensus 148 k~vaf~~---~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNG---DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcC---CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 5678885 89999999999999999977777777778899999999999999999999999 8999999999665554
Q ss_pred ec---CCeEEEEEECCCC---CEEEEe--eCCCcEEEeeCCCCCC----CCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 100 EH---KHIVRACAFSEDT---HLLLTG--GFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 100 ~~---~~~v~~~~~~~~~---~~l~s~--~~d~~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
.. ......|.|+.++ .+.+.+ ..-+.++.|++..... .......-...+.+++.+++ +.+++.++.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d-Gkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD-GKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC-CcEEEEeccC
Confidence 32 2234566777666 333333 3346677766532221 11111112336788887765 4567777778
Q ss_pred CeEEEEECCCCceeEEec--CCCCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676 168 GGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA 215 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~ 215 (264)
|.|-|++..+-+.++..+ |...|+.++|+|+.+++++ +.+.++.+.-+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999999988877664 3456999999999988765 44666666554
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=3.9e-15 Score=120.45 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=122.5
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
.||..+.|.+.+. +.|+||+.|..|++|-++.+ +.+..+..|...|+.+.|+|+|..++||++++.|.+
T Consensus 14 ~pv~s~dfq~n~~--~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSL--NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcc--cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 3788999998543 48999999999999966432 234567889999999999999999999999999999
Q ss_pred EeCC--------C-----Cc---EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEE
Q 024676 88 WDAL--------T-----GD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (264)
Q Consensus 88 wd~~--------~-----~~---~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~ 150 (264)
|... + .+ ..... .|.+.+..++|+|++.++++++.|+.+++||+..+... .....|...+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~-~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL-AILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE-eeccccccccce
Confidence 9765 2 11 11111 27778999999999999999999999999999987643 455678888999
Q ss_pred EEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676 151 VAWLHSDQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~v~iwd~~~ 177 (264)
++|-|-++++. +-+.|+..+.+++..
T Consensus 171 vawDpl~qyv~-s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 171 VAWDPLNQYVA-SKSSDRHPEGFSAKL 196 (434)
T ss_pred eecchhhhhhh-hhccCcccceeeeee
Confidence 99988766544 444556666666654
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.9e-15 Score=132.97 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=163.5
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC-CC----ceEEe---eeCC----cCCEEEEEECCCCcEEEEecCCCeE
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TG----DWIGT---FEGH----KGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~-~~----~~~~~---~~~H----~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
.|..+.+-.- -|..+|++||.||.||||... ++ +++.- ++++ .+.-.-+.|....-+|++++.-..|
T Consensus 1111 ~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1111 RVSDLELINE-QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred ccceeeeecc-cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4666666532 356689999999999999542 22 23322 2222 2222336787766566666668899
Q ss_pred EEEeCCCCcEEEEeec--CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCC--CCeEeccCCCC--eEEEEEecCCC
Q 024676 86 KLWDALTGDEKHSFEH--KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGS--IRTVAWLHSDQ 158 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~ 158 (264)
||||.........+.. ...++.+.-+. .++.+++|..||.+++||.+.... .......|+.. |..+.+.+.+-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999987776666543 34566665444 468999999999999999875433 22333445555 77777776555
Q ss_pred eEEEEeeCCCeEEEEECCCCcee--EE----ecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC-----
Q 024676 159 TILSSCTDSGGVRLWDARSGKIV--QT----LETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP----- 227 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~~--~~----~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~----- 227 (264)
..+++++.+|.|++||+|..... .+ ++..+..+++.+++....+++++.+.|+||++.... +..+..+
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~-l~~~k~n~~F~~ 1348 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ-LNIIKYNPGFMG 1348 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh-hcccccCccccc
Confidence 56778888999999999984211 11 222345899999999999999888999999985432 2222211
Q ss_pred ---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 228 ---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 228 ---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
....+..|+| ..-++++|+.|.+|.||....++.
T Consensus 1349 q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1349 QRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred CcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcCC
Confidence 1234566776 467889999999999998765543
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.2e-13 Score=110.78 Aligned_cols=233 Identities=15% Similarity=0.151 Sum_probs=162.3
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcC--CEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~--~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~ 94 (264)
..+..+-|+. +...|..|+.||. ++++.+..+. .+.--.+ .|.-+-|+..-.-+++..+-+.+|+.++..+.
T Consensus 6 ~ti~~~~~Nq---d~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 6 PTINFIGFNQ---DSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred cceeeeeecc---ceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc
Confidence 4566666874 7789999999998 5776655432 1211122 23334455433334444444569999999888
Q ss_pred EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEE-eeCCCeEE
Q 024676 95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSS-CTDSGGVR 171 (264)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~d~~v~ 171 (264)
.+..+....+|.+|.++.+ .|+.+-.+. |.+||++..+........ +...+..++.++.+.++..- +...|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 8888888888988888654 577666655 999999887665443322 22233333333333343332 23458999
Q ss_pred EEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCC-C-cEEEEECCCceeeeEEec---CCCCceeeEcCCCCCEEEE
Q 024676 172 LWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADG-S-SVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIA 245 (264)
Q Consensus 172 iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-~-~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 245 (264)
|||+.+.+.+..+. |.+++.+++|+++|.+++++++ | .||++.+.+++.+..|.- .+...+++|++ ++.+|++
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~ 235 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAA 235 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEE
Confidence 99999998887775 5678999999999999988764 4 579999999998888864 34556778888 4889999
Q ss_pred ecCCCeEEEEEcCc
Q 024676 246 GGEDMWVHVFDFHT 259 (264)
Q Consensus 246 gs~d~~v~vwd~~~ 259 (264)
.|..++|++|.+++
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 99999999998764
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.6e-14 Score=125.11 Aligned_cols=217 Identities=16% Similarity=0.133 Sum_probs=141.1
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCce--EEeeeCCcCCEEEEEECCCCcEEEEe-cCC
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASG-SAD 82 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~-s~D 82 (264)
+..+.+|..++....|+| ||++|+.++.++ .+.+||+.+++. +..+.+|. ..++|+||++.++.+ +.+
T Consensus 196 ~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSP---DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred ceEeccCCCccccceEcC---CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecC
Confidence 344567888899999996 999999887653 588999988753 44455553 357899999987765 568
Q ss_pred CeEEEE--eCCCCcEEEEeecCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676 83 FTAKLW--DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 83 ~~v~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
+.++|| |+.++.......+...+....|+|+++.++.++ .++...+|+++......... .+.+ ....|+|++..
T Consensus 270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT 346 (429)
T ss_pred CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence 877766 666665544444555677899999999777655 56788888865432222333 2222 34678888777
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECC--CceeeeEEecCC-CCceeeE
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDAN--HFGLVKGYNMPC-NTESASL 235 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~--~~~~~~~~~~~~-~~~~~~~ 235 (264)
++.++. + .+.+||+.+++....... ....+..|+|||++++. +.++.+.+|++. +++..+.+..+. .....+|
T Consensus 347 ia~~~~-~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w 423 (429)
T PRK01742 347 LVMING-D-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW 423 (429)
T ss_pred EEEEcC-C-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence 665543 3 466699999876432222 23346789999988765 446666766652 455555554322 2333445
Q ss_pred cC
Q 024676 236 EP 237 (264)
Q Consensus 236 ~~ 237 (264)
+|
T Consensus 424 sp 425 (429)
T PRK01742 424 SP 425 (429)
T ss_pred CC
Confidence 54
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.2e-14 Score=123.63 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=173.0
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--Cc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
.|+..+.+.+++| .++++|+|..||.|.+|.--. ++ ....|.=|.+.|.+++|+++|.++.||++.+.+-+|.
T Consensus 203 ~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSP---NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEecc---ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 5888899999996 889999999999999995432 22 2345666889999999999999999999999999999
Q ss_pred CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--cc--------CCCCeEEEEEecCCCe
Q 024676 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GN--------SSGSIRTVAWLHSDQT 159 (264)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~--------~~~~i~~~~~~~~~~~ 159 (264)
+.+++.....+...+|..+.++|++.+.+....|+.|.+....+.+.+.... .. ..+-...++..|.-.
T Consensus 280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~- 358 (792)
T KOG1963|consen 280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN- 358 (792)
T ss_pred ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-
Confidence 9999866666788999999999999999999999999988764322211111 11 122344555555333
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEecC------------CCCEEEEEEcCCCcEEEEeC---------CC--cEEEEECC
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYITTAD---------GS--SVKFWDAN 216 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~---------~~--~i~iwd~~ 216 (264)
.++-++..+.|.+||+-+.+.+..+.. .-.+..++.+..|.++++.+ ++ .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 344455669999999988776654421 12466677788888887652 22 47889654
Q ss_pred ----CceeeeEEecCCCC--ceeeEcCCCCC-EEEEecCCCeEEEEEcCcc
Q 024676 217 ----HFGLVKGYNMPCNT--ESASLEPKLGN-IFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 217 ----~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~gs~d~~v~vwd~~~g 260 (264)
++........|... ....+.+.... .++++|.|+.+++|-+...
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 34444444444332 23334333333 8999999999999987433
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=1.2e-14 Score=113.07 Aligned_cols=157 Identities=21% Similarity=0.251 Sum_probs=125.1
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce-EEee-----eCCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTF-----EGHKGAVWSCCLDA--NALFSASGSADFTAK 86 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~-----~~H~~~V~~v~~~~--~~~~l~s~s~D~~v~ 86 (264)
|-+.|.||.|.| ++..|++-. |..|.+|+...+.. ++.+ .+|+..-.+-+|+| ++..+++.+ |++++
T Consensus 122 avg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~ 196 (370)
T KOG1007|consen 122 AVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ 196 (370)
T ss_pred HhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence 445789999997 667776655 88899999876643 3332 23566667778887 666666554 88999
Q ss_pred EEeCCCCcEEEEee--cCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676 87 LWDALTGDEKHSFE--HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (264)
Q Consensus 87 iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (264)
.||+++..+...++ |...|+.+.|+|+-+ +|++|+.|+.+|+||.+..+.+......|...++++.|+|....++.+
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999887666664 777899999999764 577889999999999998888778888899999999999988888888
Q ss_pred eeCCCeEEEEECC
Q 024676 164 CTDSGGVRLWDAR 176 (264)
Q Consensus 164 ~~~d~~v~iwd~~ 176 (264)
++.|..|.+|...
T Consensus 277 ~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 277 GGSDSAVNLSCAS 289 (370)
T ss_pred cCCCceeEEEecc
Confidence 8888999999653
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-14 Score=131.09 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=153.5
Q ss_pred EeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCC-------cEEEEee-cCCeEEEEEECCCCCE
Q 024676 46 RNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTG-------DEKHSFE-HKHIVRACAFSEDTHL 116 (264)
Q Consensus 46 ~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~ 116 (264)
|+.+ |.+++.+..|+..|..++.++.. .+++|||.||+||+||...- +...++. ....+..+...+++..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 4443 77888999999999999888765 99999999999999997542 1233443 4567888999999999
Q ss_pred EEEeeCCCcEEEeeCCCCCCCC---e--Eec--cCCC-CeEEEEEecCCCe-EEEEeeCCCeEEEEECCCCceeEEec--
Q 024676 117 LLTGGFEKILRIFDLNRPDAPP---R--EVG--NSSG-SIRTVAWLHSDQT-ILSSCTDSGGVRLWDARSGKIVQTLE-- 185 (264)
Q Consensus 117 l~s~~~d~~i~~~d~~~~~~~~---~--~~~--~~~~-~i~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~-- 185 (264)
++.++.||.|.+..++...... . .+. ...+ .+.+-++....+. .++.+..-+.|-.||.++....+..+
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999887521111 1 111 1122 3444444444444 66777788999999999887665543
Q ss_pred -CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCC--CCceeeEcCCCC--CEEEE-ec-CCCeEEEEEc
Q 024676 186 -TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC--NTESASLEPKLG--NIFIA-GG-EDMWVHVFDF 257 (264)
Q Consensus 186 -~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~-gs-~d~~v~vwd~ 257 (264)
.++.|++++.+|.+.+++.|. .|.+-+||+|-+.++..+.++. .+.....++-.+ ...++ ++ ..+-|-+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 356799999999999887665 5889999999998888887654 333333333223 44454 44 5788999999
Q ss_pred Ccce
Q 024676 258 HTGE 261 (264)
Q Consensus 258 ~~g~ 261 (264)
.+|.
T Consensus 1273 ~~g~ 1276 (1431)
T KOG1240|consen 1273 ETGL 1276 (1431)
T ss_pred ccCc
Confidence 8873
No 192
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.5e-15 Score=124.19 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=182.1
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee-eCCcCCEEEEEECCC--CcEEEEecCCCeEEE
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDAN--ALFSASGSADFTAKL 87 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~-~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~i 87 (264)
.+.+|.+.|+.|.|+. .|..|++||.|..+.+||=..+..+..| .||...|..-.|-|. ...+++++.||.|++
T Consensus 137 kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred cccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 3468999999999995 8999999999999999998887765444 689988988888763 456899999999999
Q ss_pred EeCCC-Cc---EEEEeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCC---CCeEEEEEecCC
Q 024676 88 WDALT-GD---EKHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP--REVGNSS---GSIRTVAWLHSD 157 (264)
Q Consensus 88 wd~~~-~~---~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~---~~i~~~~~~~~~ 157 (264)
=.+.. +. .++..+|..+|..++..|. .+.+++++.|+.++-+|++...... ....... -.+..++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 76543 32 3445579999999999995 4678899999999999997654321 1212222 246777778888
Q ss_pred CeEEEEeeCCCeEEEEECCCCce------eEEec-------CCCCEEEEEEcCCC-cEEEEeCCCcEEEEECCC--c---
Q 024676 158 QTILSSCTDSGGVRLWDARSGKI------VQTLE-------TKSPVTSAEVSRDG-RYITTADGSSVKFWDANH--F--- 218 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~~~~------~~~~~-------~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~--~--- 218 (264)
.+.+++++.|..+++||.+.-.. +..+. ....|++++++.++ .++++-.|-.|.++.-.- +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 88889988899999999875321 23331 12458999999665 567776778898885432 1
Q ss_pred -------eeeeE-EecCCCCc---eeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 219 -------GLVKG-YNMPCNTE---SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 219 -------~~~~~-~~~~~~~~---~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
..++. |+.+-+.. -..|..+-..|+++||.=|-|-+|+.+++++|
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 11223 44433322 23444334789999999999999999999876
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=1.4e-15 Score=129.51 Aligned_cols=198 Identities=19% Similarity=0.190 Sum_probs=140.5
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-------eEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEE
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLW 88 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-------~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iw 88 (264)
.-|..+.|+|. |-..||.+..|+.|++|-+..+. .-..+.+|...|.++.|+|- ...|++++.|.+|++|
T Consensus 628 t~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 35788999996 55689999999999999876542 23567889999999999984 4667999999999999
Q ss_pred eCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeC
Q 024676 89 DALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTD 166 (264)
Q Consensus 89 d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (264)
|+.++.....+ .|.+.|..++|+|+|+.+++.+.|+++++|+-++++....+- +.....-.-+.|-=++..++++|.+
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 99998765555 589999999999999999999999999999988776554433 2222222334555567777777653
Q ss_pred ---CCeEEEEECCCCc--eeEEecCC--CCEEEEEEcCCCc-EEEEe-CCCcEEEEECC
Q 024676 167 ---SGGVRLWDARSGK--IVQTLETK--SPVTSAEVSRDGR-YITTA-DGSSVKFWDAN 216 (264)
Q Consensus 167 ---d~~v~iwd~~~~~--~~~~~~~~--~~v~~~~~s~~~~-~l~~~-~~~~i~iwd~~ 216 (264)
.++|.+||.++-. .+.+.... ..+.--.+.+|.. +++++ .|+.|..|.+-
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 2568888876533 33322211 1111112445543 34444 46789888874
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=7.4e-14 Score=122.70 Aligned_cols=256 Identities=19% Similarity=0.288 Sum_probs=184.2
Q ss_pred CCcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC---cEEE
Q 024676 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA---LFSA 77 (264)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~---~~l~ 77 (264)
||+-+.-+|..+.|-..--..-.|+ +|+++|+....+ .|.||...+|+++..+.+|.+++..+.+.|.. .++.
T Consensus 1 ~~~e~~~~~~~lgg~n~~~~~avfS---nD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~ 76 (792)
T KOG1963|consen 1 MDRESGGKPALLGGRNGNKSPAVFS---NDAKFLFLCTGN-FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLI 76 (792)
T ss_pred Cccccccceeeeccccceecccccc---cCCcEEEEeeCC-EEEEEecchHhhhhhcccccCccceeeecCCCccceEEE
Confidence 6666777777776655544445566 488888776654 68999999999999999999999999998754 4567
Q ss_pred EecCCCeEEEEeCCCCcEEEEe----------------------------------------------------------
Q 024676 78 SGSADFTAKLWDALTGDEKHSF---------------------------------------------------------- 99 (264)
Q Consensus 78 s~s~D~~v~iwd~~~~~~~~~~---------------------------------------------------------- 99 (264)
+++-||+|++||...+..+.++
T Consensus 77 ~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 77 VCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred EEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence 9999999999996443220000
Q ss_pred ----------------------------------------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC-C
Q 024676 100 ----------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL-N 132 (264)
Q Consensus 100 ----------------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~-~ 132 (264)
.|...+++.++||++++++++..||.|.+|.- .
T Consensus 157 ~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 157 LKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred hhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence 02234577899999999999999999999963 2
Q ss_pred --CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCc
Q 024676 133 --RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSS 209 (264)
Q Consensus 133 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~ 209 (264)
......+.+..|..++.+++|++++.+++ +|+..+.+-+|.+.+++...--...+++..+.+|||+.+. +...|+.
T Consensus 237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred cccccccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 22334566677888999999999877655 5556699999999999854433567899999999999765 4567888
Q ss_pred EEEEECCCceee---eEEecC---------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 210 VKFWDANHFGLV---KGYNMP---------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 210 i~iwd~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
|.+....+.+.. .++... +-....++.|+ ...++-.+..+.|.+||+-+-+.
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDST 379 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccce
Confidence 888877655443 222221 11123345554 45567777889999999876554
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=7.7e-14 Score=110.01 Aligned_cols=232 Identities=15% Similarity=0.181 Sum_probs=168.2
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
++--.+||+|.+|++ |++.+|.+-....+.||.....+ ...+++.|...|..+.|+|....++|++.|....+|
T Consensus 6 ~~~~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 344567899999995 99999999999999999877665 467899999999999999999999999999999999
Q ss_pred eCCCC-c---EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC---CCeEeccCCCCeEEEEEecCCCeEE
Q 024676 89 DALTG-D---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTIL 161 (264)
Q Consensus 89 d~~~~-~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (264)
....+ . .+..++++...+++.|+|.++.+++|+.-+.|.+|=.+.... ......+....|.+++|.|++ .++
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLl 161 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLL 161 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-cee
Confidence 98443 2 344557889999999999999999999999999886653221 112223456678999998765 467
Q ss_pred EEeeCCCeEEEEECC-----C-------------CceeEEe-cCCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCce-e
Q 024676 162 SSCTDSGGVRLWDAR-----S-------------GKIVQTL-ETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFG-L 220 (264)
Q Consensus 162 ~~~~~d~~v~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~-~ 220 (264)
+.++-|+..|+|..- . |+.+.++ .....+..+.|+|+|..|+ .+.|..+.+-|...-. .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 777778999999642 1 1222233 2235689999999998876 4678899888876543 3
Q ss_pred eeEEecCCCC-ceeeEcCCCCCEEEEecCC
Q 024676 221 VKGYNMPCNT-ESASLEPKLGNIFIAGGED 249 (264)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d 249 (264)
+........+ .+..+.. ...+++++.|
T Consensus 242 v~~~~~~~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred ccchhhccCCceeeEeec--CCceeecCCC
Confidence 3333332222 2333332 3345555555
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=9.7e-16 Score=125.89 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=175.1
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE 100 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 100 (264)
.+.|. .+|++|+.|+.-|.+--+|-.++.+...+.- ...|+.+.|-.+..++|.+ +..-+.||| ..|..+..+.
T Consensus 134 ~~~yt---rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 134 HLDYT---RNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred eeeec---CCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence 56776 4899999999999999999998887766642 3578889999888887654 566799999 4566677776
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 024676 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180 (264)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 180 (264)
....|..+.|-|..-+|++++..|.++.-|+..++..... ..-.+.+..+..+|-+. ++-.|...|+|.+|...+.++
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcch
Confidence 6678999999999989999999999999999887754333 23456777777777654 555666779999999998887
Q ss_pred eEEe-cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 181 VQTL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 181 ~~~~-~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
+-.+ .+.++|.++++.|+|+|+++ +-|+.++|||+|++..+.++..+......+++. +-+++.|....|.+|.
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq---kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ---KGLLALSYGDHVQIWK 360 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc---ccceeeecCCeeeeeh
Confidence 6544 57789999999999999876 559999999999998888887655555555543 2345555666799993
No 197
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=5.3e-13 Score=115.86 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=142.3
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC---CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (264)
.+.++|.. |...+.+..|...+.+.+|+||++.++..+. +..|.+||+.++.......+...+....|+|+++.|+
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 56677764 4445567778889999999999998876653 4689999998887654444556677889999998765
Q ss_pred -EeeCCCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEE
Q 024676 119 -TGGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (264)
Q Consensus 119 -s~~~d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~ 193 (264)
+.+.++. |.+||+++++. ..+..+.+......|+|++..++.+...++ .|.++|+.+++..............
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred EEEecCCCceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 5555555 66678876543 333334444566789998877766544433 6888898877654433333446668
Q ss_pred EEcCCCcEEEEe-C-C--CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCC------CeEEEEEcCcce
Q 024676 194 EVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED------MWVHVFDFHTGE 261 (264)
Q Consensus 194 ~~s~~~~~l~~~-~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d------~~v~vwd~~~g~ 261 (264)
.|+|+|+.++.. . . ..|.+||+.... .+.+..........+.|+ |++++..+.+ ..++++|++.++
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spD-G~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPN-GRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCC-CCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 899999887653 2 2 368888875443 233333333455677775 6666554332 357888876544
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=2.2e-12 Score=108.93 Aligned_cols=239 Identities=16% Similarity=0.164 Sum_probs=151.6
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEe-cCCCeEEEEeCCCCcEEEEe
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALTGDEKHSF 99 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~ 99 (264)
.+.|+ +||+++.+++.|+.+.++|+.+++.++++..-. .-+.+++++||++++++ ..++.+.++|..+.+.+..+
T Consensus 41 ~~~~s---~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 41 GLKFS---PDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEE-T---T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred EEEec---CCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 35666 599999999999999999999999998887433 34779999999988654 57899999999999888876
Q ss_pred ec--------CCeEEEEEECCCCCEEEEeeCC-CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 100 EH--------KHIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 100 ~~--------~~~v~~~~~~~~~~~l~s~~~d-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
+. +..+..+..+|....++..-.| +.|-+.|......................|.|++.+++++....+.|
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 52 2346677778888766666555 77777776544322222222334566677888888888777777789
Q ss_pred EEEECCCCceeEEecCC-------------------------------------------------------CCEEEEEE
Q 024676 171 RLWDARSGKIVQTLETK-------------------------------------------------------SPVTSAEV 195 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-------------------------------------------------------~~v~~~~~ 195 (264)
-++|.++++.+..+... ..-..+..
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t 276 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT 276 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE-
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec
Confidence 99998877654322100 01134555
Q ss_pred cCCCcEEEEe----C-CCcEEEEECCCceeeeEEecCCC--CceeeEcCCCCCEEEEecC-CCeEEEEEcCcceee
Q 024676 196 SRDGRYITTA----D-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGE-DMWVHVFDFHTGEQI 263 (264)
Q Consensus 196 s~~~~~l~~~----~-~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~-d~~v~vwd~~~g~~i 263 (264)
+|+++++... . .++|.++|.++.+.++++..... ..-..|++++.+..++.-. ++.|.+||.+|.+++
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 8999887554 3 36899999999988877754333 4455666653344444433 448999999998875
No 199
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.8e-13 Score=116.03 Aligned_cols=214 Identities=17% Similarity=0.131 Sum_probs=139.1
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC---CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (264)
.+.+||.. +...+.+..|...+.+.+|+||++.++..+. +..+.+||+.++................|+|+++.++
T Consensus 185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 57788875 4434456667788999999999998887663 3479999998887544433444455789999998765
Q ss_pred -EeeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceeEEecCCCCEEEE
Q 024676 119 -TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA 193 (264)
Q Consensus 119 -s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~ 193 (264)
+.+.++ .|.+||+.+++. ..+..+.......+|+|++..++.+...++. |.++|+.+++..............
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA 341 (433)
T ss_pred EEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 445554 588999877653 2333333344567899888777666544444 666787777654322222334468
Q ss_pred EEcCCCcEEEEe--CCC--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC---CCeEEEEEcCcc
Q 024676 194 EVSRDGRYITTA--DGS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHTG 260 (264)
Q Consensus 194 ~~s~~~~~l~~~--~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~---d~~v~vwd~~~g 260 (264)
.|+|+|++++.. .++ .|.+||+.+++.. .+..........++++ |++++..+. ...+++++++.+
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spd-G~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPN-GSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCC-CCEEEEEEecCCceEEEEEECCCC
Confidence 999999887643 222 6899999776543 2322222334567774 776665554 346788887543
No 200
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.5e-12 Score=112.58 Aligned_cols=212 Identities=15% Similarity=0.152 Sum_probs=137.9
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec---CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (264)
.+.++|..... .+.+..+...+.+.+|+||++.++..+ .+..+.+||+.+++..........+....|+|+++.|+
T Consensus 180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 56777776443 334545667899999999999887543 34579999998886544433344455689999999887
Q ss_pred Ee-eCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE--ECCCCceeEEecCCCCEEEE
Q 024676 119 TG-GFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARSGKIVQTLETKSPVTSA 193 (264)
Q Consensus 119 s~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw--d~~~~~~~~~~~~~~~v~~~ 193 (264)
.. +.++ .|.+||+++++. ..+...........|+|++..++.+...++...|| |+.+++..............
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~ 336 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 336 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 54 3344 488889876543 33333344567788999888776665544544554 77776554322223345578
Q ss_pred EEcCCCcEEEEe-C-C--CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCe---EEEEEcC
Q 024676 194 EVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW---VHVFDFH 258 (264)
Q Consensus 194 ~~s~~~~~l~~~-~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~---v~vwd~~ 258 (264)
.|+|||++++.. . + ..|.+||+.+++. +.+..........+.| +|++++.++.++. +++++++
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEECC
Confidence 899999887543 2 2 3588899987753 2333222233556777 5888888887764 6777774
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.2e-13 Score=111.44 Aligned_cols=219 Identities=15% Similarity=0.198 Sum_probs=159.4
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc----eEEeeeCCcCCEEEEEECCCC-cEEEEecCC--C
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----WIGTFEGHKGAVWSCCLDANA-LFSASGSAD--F 83 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~----~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D--~ 83 (264)
.+.+.+++|..++.. || .|++|-.+|.+++|....+. .+..+..+ .++..+.-.+.. .++++|+.. .
T Consensus 100 ~~~l~~~~I~gl~~~----dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA----DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred ccccccccccchhhc----CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence 345667777777776 44 57888999999999887553 12233333 345555555544 455779998 8
Q ss_pred eEEEEeCCCCcEEEEeec--------CCe--EEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676 84 TAKLWDALTGDEKHSFEH--------KHI--VRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV 151 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~--------~~~--v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~ 151 (264)
.++|||+++..++..-.. .-| ++.+.|-+. ...+++++.-+.+|+||.+.++.+...+.-...++.++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 999999998855444321 113 356777666 77899999999999999998877777766667788888
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCceeEE-ecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC
Q 024676 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC 228 (264)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~ 228 (264)
...|.+.. +.++...+.+..||+++++.... +.. ...+.++..+|++.++++ +-|+.+||+|+.+...+.......
T Consensus 254 ~l~p~gn~-Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 254 GLTPSGNF-IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred eecCCCcE-EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 88876655 55556669999999999987655 443 467999999999999876 559999999999987776666666
Q ss_pred CCceeeEc
Q 024676 229 NTESASLE 236 (264)
Q Consensus 229 ~~~~~~~~ 236 (264)
..+.+.+.
T Consensus 333 ~lt~il~~ 340 (412)
T KOG3881|consen 333 RLTFILLR 340 (412)
T ss_pred cccEEEec
Confidence 65555553
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.62 E-value=3e-14 Score=119.26 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=145.9
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEEC
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS 111 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 111 (264)
..++.++.||.+.+-+- .++.-+.++.|.+.|.+-.|+|||.-++|++.||.||||.-...-.....+...+|++++|.
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence 47788899998877653 35555678899999999999999999999999999999984333222223456789999999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEE
Q 024676 112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVT 191 (264)
Q Consensus 112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~ 191 (264)
|+++.++-|-. +.+.+=.+.- .........|.|-+.++.|++.. .+++++++|-..+|||........+-.+..+|+
T Consensus 155 p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 155 PNSNSIVFCQG-GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCceEEecC-CeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcccccCChhcccee
Confidence 98766665433 3444444432 22334556789999999999754 477788899999999987555444455678999
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676 192 SAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 192 ~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vw 255 (264)
+++|.|+..|++.+ -.+.|+=..+.+ ....+++++ +|..+++|...|.+.+=
T Consensus 232 Sva~npd~~~~v~S-~nt~R~~~p~~G----------SifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 232 SVAFNPEKDYLLWS-YNTARFSSPRVG----------SIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeccccceeeee-eeeeeecCCCcc----------ceEEEEEcC-CCceeeccccCceEEEe
Confidence 99999995454443 334552222211 123456776 47778888777776553
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=3.3e-14 Score=109.34 Aligned_cols=240 Identities=16% Similarity=0.163 Sum_probs=155.5
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAK 86 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~ 86 (264)
+++++++|...|.++-|-. ++ +|.+|..-|.+.+|++.+..-+-.+++ |+..|..+.--|+ ..+.|-++|..+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa---~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQA---NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred CeeEeccccchheehhhcc---ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 4567889999999999984 33 588999999999999998887777874 6778888887776 4567899999999
Q ss_pred EEeCCCCcEEEEeecCCeEEEEEECCC-----C----CEEEEeeCCCc-EEEeeCCCCCCCCeEe-----ccCCCCeEEE
Q 024676 87 LWDALTGDEKHSFEHKHIVRACAFSED-----T----HLLLTGGFEKI-LRIFDLNRPDAPPREV-----GNSSGSIRTV 151 (264)
Q Consensus 87 iwd~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~s~~~d~~-i~~~d~~~~~~~~~~~-----~~~~~~i~~~ 151 (264)
+|++..+..+.. |.-.++.+.|.+. . .+++.-+.... ..+-|. +.....++ ....+.+.+.
T Consensus 81 lw~ia~s~~i~i--~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 81 LWTIAYSAFISI--HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEEccCcceEEE--eeeeccccccccceeccCCCcchhheecCCcccchhhhhcc--CccceeEccCchhccccCceeee
Confidence 999876542221 2223333333322 1 11111111000 111111 11111111 1123455555
Q ss_pred EEecCC--CeEEEEeeCCCeEEEEECCCCceeEEec-----------CCCC-----------------------------
Q 024676 152 AWLHSD--QTILSSCTDSGGVRLWDARSGKIVQTLE-----------TKSP----------------------------- 189 (264)
Q Consensus 152 ~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----------~~~~----------------------------- 189 (264)
.+-... ..++++|.++|.+-+||+.++..+..++ +..+
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 543322 3467788899999999999874332221 1122
Q ss_pred -----------------EEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCC
Q 024676 190 -----------------VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDM 250 (264)
Q Consensus 190 -----------------v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~ 250 (264)
++.+.+-||++.+++ +.|++||+|.-++..++..++.+. .....+|+|+ ..+++++|.|.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd-~~lmAaaskD~ 315 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD-CELMAAASKDA 315 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC-CchhhhccCCc
Confidence 233344578888876 569999999999998877666543 4567778874 68999999999
Q ss_pred eEEEEEc
Q 024676 251 WVHVFDF 257 (264)
Q Consensus 251 ~v~vwd~ 257 (264)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999985
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=2.6e-16 Score=137.31 Aligned_cols=204 Identities=21% Similarity=0.313 Sum_probs=145.6
Q ss_pred EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (264)
Q Consensus 54 ~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 132 (264)
++.+.||..+|+|+.|...+.+++||+.|..||||.+.++.++...+ |...++.++.+.++-.+++++.|..|++|-+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 45678999999999999999999999999999999999999888875 88889999999999999999999999999998
Q ss_pred CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEE-----ecCCCCEEE---------------
Q 024676 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-----LETKSPVTS--------------- 192 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-----~~~~~~v~~--------------- 192 (264)
.+... ..+..|+|.|+.++|+|-- +.++||++++||.+=.-.+.. +.....+.+
T Consensus 263 ~~~pv-svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 263 DGAPV-SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CCchH-HHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 87654 3344689999999998743 567889999999881000000 000011111
Q ss_pred -----------EEEcCCCcEEEE------------eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEecC
Q 024676 193 -----------AEVSRDGRYITT------------ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGE 248 (264)
Q Consensus 193 -----------~~~s~~~~~l~~------------~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~ 248 (264)
+++..+...++. -.+-.+.+|++-++..++....+.. .....++|-+.++--+++.
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 111112111111 1223466788777755544433332 3345666766677778999
Q ss_pred CCeEEEEEcCcceee
Q 024676 249 DMWVHVFDFHTGEQI 263 (264)
Q Consensus 249 d~~v~vwd~~~g~~i 263 (264)
||...|||...|-++
T Consensus 417 dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPI 431 (1113)
T ss_pred CCceEeeecccCCcc
Confidence 999999998877654
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=4.8e-14 Score=118.05 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=126.5
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~ 92 (264)
..|.+.|.+-+|+| ||.-|++++.||.|+||+-. |-+..++.....+|+|++|.|++..++-+..++ +.|=.+..
T Consensus 101 ~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h-~~IKpL~~ 175 (737)
T KOG1524|consen 101 SAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH-ISIKPLAA 175 (737)
T ss_pred hhhhhhhhhcccCC---CCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCCe-EEEeeccc
Confidence 47999999999996 99999999999999999853 433344555667999999999987665544443 44444443
Q ss_pred CcEEEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 93 GDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 93 ~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
...... ..|...|.++.|+|.+.++++|+.|-..++||.-. .. ......|.-++++++|.|+ ..++.++. .++|
T Consensus 176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~-Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-AN-LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTAR 250 (737)
T ss_pred ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cc-cccCChhccceeeeeeccc--cceeeeee-eeee
Confidence 333333 35888999999999999999999999999999642 22 2223356778999999986 34444454 4555
Q ss_pred EEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC
Q 024676 172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207 (264)
Q Consensus 172 iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 207 (264)
+ .. ..-..|..++||+||.-++++..
T Consensus 251 ~---------~~-p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 251 F---------SS-PRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred e---------cC-CCccceEEEEEcCCCceeecccc
Confidence 2 11 12246888999999988887653
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.6e-14 Score=114.80 Aligned_cols=192 Identities=19% Similarity=0.257 Sum_probs=132.2
Q ss_pred EEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc
Q 024676 65 WSCCLDANALFSASGSADFTAKLWDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143 (264)
Q Consensus 65 ~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~ 143 (264)
..++|++++..+++|+.||++|+|+..+...+. ..+|...|.++.|+|++++|++-+.| ..++|+.+++......-..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 668999999999999999999999977655433 44688899999999999999999999 8999999887432221111
Q ss_pred CCCC-eEEEEEecCC--Ce--EEEEeeCCCeEEEEECCCCc---ee---EEecCCCCEEEEEEcCCCcEEEEeC-CCcEE
Q 024676 144 SSGS-IRTVAWLHSD--QT--ILSSCTDSGGVRLWDARSGK---IV---QTLETKSPVTSAEVSRDGRYITTAD-GSSVK 211 (264)
Q Consensus 144 ~~~~-i~~~~~~~~~--~~--~~~~~~~d~~v~iwd~~~~~---~~---~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~ 211 (264)
.+.+ ...+.|..++ +. +++.-..-+.|+.||+..-+ .+ +.+.....+.+++++++|+|++.+. ++.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 1222 2233344322 12 23333344567776654211 11 1223456799999999999997654 89999
Q ss_pred EEECCCceeeeEEec-CCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 212 FWDANHFGLVKGYNM-PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 212 iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
|++..+.+.++-.+. +.. .....|.| +.+++++-|.|....|.-+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence 999988877765543 222 34566777 47778888888888877543
No 207
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=8e-13 Score=114.35 Aligned_cols=213 Identities=17% Similarity=0.126 Sum_probs=131.9
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (264)
.+.++|. +|...+.+..+...+.+.+|+||++.++..+.+ ..|.+||+.+++..........+....|+|+++.|+
T Consensus 177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 4555665 354445566677889999999999988766543 469999999887654433444566789999998776
Q ss_pred -EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE--CCCCceeEEecCCCCEEEEEE
Q 024676 119 -TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--ARSGKIVQTLETKSPVTSAEV 195 (264)
Q Consensus 119 -s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd--~~~~~~~~~~~~~~~v~~~~~ 195 (264)
+.+.++...+|.++........+..+.+......|+|++..++.++..++...||. +.+++...............|
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 55677776666543221123333333444556789998887776655456666665 455554322222222345789
Q ss_pred cCCCcEEEEe-CC-C--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC---eEEEEEc
Q 024676 196 SRDGRYITTA-DG-S--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDF 257 (264)
Q Consensus 196 s~~~~~l~~~-~~-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~v~vwd~ 257 (264)
+|||++++.. .. + .|.+||+.+++.. .+..........+.|+ +++++..+.++ .+++.++
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spd-g~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPN-GRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCC-CCEEEEEEecCCCEEEEEEEC
Confidence 9999987643 22 2 6899999876533 2322223345677775 66666555433 3444455
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=7.8e-13 Score=114.82 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=137.8
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeC---CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCe-
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFT- 84 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~---d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~- 84 (264)
..+..|..++...+|+| ||+.|+..+. +..+.+|++.+++.. .+..+.+.+...+|+||++.+ ++.+.++.
T Consensus 195 ~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred EEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 34456788899999996 9998888764 357899999888653 455566778889999999876 46666665
Q ss_pred -EEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 85 -AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 85 -v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
|.+||+.++.......+........|+|+++.++..+. ++ .|.++|+.+++. ..+....+......|+|++..+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~--~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP--RRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe--EEeecCCCcccCeEECCCCCEE
Confidence 66668888766554445555667899999998887664 33 577778765443 2332234455667899988877
Q ss_pred EEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eC-C-----CcEEEEECCCce
Q 024676 161 LSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-G-----SSVKFWDANHFG 219 (264)
Q Consensus 161 ~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~-~-----~~i~iwd~~~~~ 219 (264)
+.+.... ..|.+||+.++.. ..+.....+....|+|||++++. +. . ..+.++|+....
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 6655433 3688889866543 33333334667889999988654 22 2 246777775543
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.2e-13 Score=115.80 Aligned_cols=203 Identities=15% Similarity=0.091 Sum_probs=133.4
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCC-
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF- 83 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~- 83 (264)
+..+..|..++...+|+| ||+.|+..+.++ .+.+|++.+++.. .+..+.+...+.+|+||++.++ +.+.++
T Consensus 196 ~~~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 196 PQTILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred ceEeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 444556777888888885 999998887543 5888999887643 3333444556789999998764 556665
Q ss_pred -eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676 84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 84 -~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
.|.+||+.+++......+........|+|+++.++.++. ++. +.++++.+++. ..+..........+|+|++..
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCE
Confidence 588999988875544444444567899999998887664 444 55566655442 222222233445789998887
Q ss_pred EEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-C-C--CcEEEEECCCc
Q 024676 160 ILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDANHF 218 (264)
Q Consensus 160 ~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~--~~i~iwd~~~~ 218 (264)
++.+..+++ .|.+||+.+++.. .+..........|+|||++++.. . + ..+.++++...
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 766544333 6999999888754 33332234467899999876543 2 2 35777777543
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=6.5e-13 Score=120.62 Aligned_cols=246 Identities=17% Similarity=0.131 Sum_probs=163.8
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-----c--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----D--WIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-----~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
+-|+..|..++-++ +++.+++|||.||+|++|+...- . ...++..-...+.++.+-+.+..+|.++.||.|
T Consensus 1045 ~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 46777777766665 66789999999999999987542 1 123444456788889888899999999999999
Q ss_pred EEEeCCCCcE-------EEEee--cCC-eEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeE-eccCCCCeEEEE
Q 024676 86 KLWDALTGDE-------KHSFE--HKH-IVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTVA 152 (264)
Q Consensus 86 ~iwd~~~~~~-------~~~~~--~~~-~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~ 152 (264)
++.++...+. .+... ... .|...++.. .+..++.+..-+.|-.||++.....+.. .....|.+++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 9998865211 11111 112 233333433 2235666777788999999876544432 233467899998
Q ss_pred EecCCCeEEEEeeCCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCC---cE-EEEeC--CCcEEEEECCCceeeeEE
Q 024676 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDG---RY-ITTAD--GSSVKFWDANHFGLVKGY 224 (264)
Q Consensus 153 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~---~~-l~~~~--~~~i~iwd~~~~~~~~~~ 224 (264)
..+-+.+ ++.|...|.+-+||+|=+..+..+. ...++..+..+|-. .. ++++. .+.+.+|++.++.+-..+
T Consensus 1203 idp~~~W-lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1203 IDPWCNW-LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred ecCCceE-EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 8776654 5555666999999999888877665 45677777776543 23 33333 368999999988665555
Q ss_pred ecC-----------CC----Cc----eeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 225 NMP-----------CN----TE----SASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 225 ~~~-----------~~----~~----~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
-.. .+ +. ..+-....+.++.+|+.|..||.||...-+
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 332 11 00 011112235689999999999999976543
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1e-12 Score=100.22 Aligned_cols=231 Identities=16% Similarity=0.144 Sum_probs=150.7
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC----CC---ce-EEeeeCCc-----CCEEEEEECCCCcEEEEe
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----TG---DW-IGTFEGHK-----GAVWSCCLDANALFSASG 79 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~----~~---~~-~~~~~~H~-----~~V~~v~~~~~~~~l~s~ 79 (264)
.+|..||+.++|. | .+|++|+ ||.|+=|.=+ +. ++ ....-.|. -.|+++-..|...-+..+
T Consensus 59 qahdgpiy~~~f~----d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH----D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred cccCCCeeeeeee----h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence 7999999999998 3 3555554 5988877421 11 11 11112233 347888889877777777
Q ss_pred cCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--------ccCCC-CeE
Q 024676 80 SADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--------GNSSG-SIR 149 (264)
Q Consensus 80 s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--------~~~~~-~i~ 149 (264)
+.|+.+.-||+++|...++++ |++.+.++.--.....+++|+.||++|+||.++++.....- .++.+ .|.
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 789999999999999988886 89999998874444568899999999999998876432211 11112 234
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec-CC
Q 024676 150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PC 228 (264)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~-~~ 228 (264)
+++- +..++++++ .-.+.+|.+++-++...+....++..+.|-.+ ..++++.++.+.-|.+..--.. ..+. +.
T Consensus 213 ala~--~edWlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~a-~ip~~s~ 286 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQA-NIPVEST 286 (325)
T ss_pred EEec--cCceEEecC--CCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeeccEEEE-eccCCcc
Confidence 4432 344555443 25799999999999888888888888888654 4556677788888876432111 1122 11
Q ss_pred CCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676 229 NTESASLEPKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gs~d~~v~vw 255 (264)
.+.+.++...-=+++..+|....+.++
T Consensus 287 ~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 287 ACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ceeeecccCCceEEEEecccceeeeee
Confidence 222222221112455567777777776
No 212
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=2.2e-13 Score=108.46 Aligned_cols=244 Identities=18% Similarity=0.272 Sum_probs=165.9
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC---Cc--eEEeeeCCc------------CCEEEEEECCCCc--
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GD--WIGTFEGHK------------GAVWSCCLDANAL-- 74 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~---~~--~~~~~~~H~------------~~V~~v~~~~~~~-- 74 (264)
...+.|.+|.|.. +|.+|+||..+|-|-++.-+. ++ +..+|..|+ ..|..+.|-+++.
T Consensus 23 teadiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 23 TEADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred chhcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 4566788999994 899999999999998874332 22 334555554 4578888877653
Q ss_pred EEEEecCCCeEEEEeCCCCcEE-----------------------------------EEee--cCCeEEEEEECCCCCEE
Q 024676 75 FSASGSADFTAKLWDALTGDEK-----------------------------------HSFE--HKHIVRACAFSEDTHLL 117 (264)
Q Consensus 75 ~l~s~s~D~~v~iwd~~~~~~~-----------------------------------~~~~--~~~~v~~~~~~~~~~~l 117 (264)
.+.....|+++|+|.+...... +.+. |...++++.++.+...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 3445566999999987432110 1111 45568899999999888
Q ss_pred EEeeCCCcEEEeeCCCCCCCCe--EeccCC-----CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-ee---EEec-
Q 024676 118 LTGGFEKILRIFDLNRPDAPPR--EVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IV---QTLE- 185 (264)
Q Consensus 118 ~s~~~d~~i~~~d~~~~~~~~~--~~~~~~-----~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~---~~~~- 185 (264)
+++ .|=.|.+|+++....... .+.+++ -.|++..|.|....+++-++..|+|++-|+|... |- ..++
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 865 567799999875433222 222222 2355556666666777767777999999998432 11 0111
Q ss_pred ---C---------CCCEEEEEEcCCCcEEEEeCCCcEEEEEC-CCceeeeEEecCCCCc----------------eeeEc
Q 024676 186 ---T---------KSPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYNMPCNTE----------------SASLE 236 (264)
Q Consensus 186 ---~---------~~~v~~~~~s~~~~~l~~~~~~~i~iwd~-~~~~~~~~~~~~~~~~----------------~~~~~ 236 (264)
. -..|..+.|+++|+++++-+=-+|++||+ ...+++.++++++... .+++.
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 0 14678899999999998876679999999 5667788888764321 22344
Q ss_pred CCCCCEEEEecCCCeEEEEEcCccee
Q 024676 237 PKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 237 ~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
. .+.++.|||.....++|+...|.+
T Consensus 339 g-~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 339 G-NDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred C-CcceEecccccceEEEecCCCCcc
Confidence 3 367899999999999999777654
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=4.3e-13 Score=108.35 Aligned_cols=244 Identities=16% Similarity=0.176 Sum_probs=163.4
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe------eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT------FEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~------~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
...|..+.|. .-+....|+..+.|..+.+.+......... ..+-+++|..++.. ...+++|-.+|.+++|.
T Consensus 55 ~~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheee-cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 3456666776 233445666666777777766655443322 23345566555433 34567778899999999
Q ss_pred CCCCc----EEEEeecCCeEEEEEECCCCC-EEEEeeCC--CcEEEeeCCCCCCCCeEeccCC--------CCeEEEEEe
Q 024676 90 ALTGD----EKHSFEHKHIVRACAFSEDTH-LLLTGGFE--KILRIFDLNRPDAPPREVGNSS--------GSIRTVAWL 154 (264)
Q Consensus 90 ~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~~--------~~i~~~~~~ 154 (264)
...+. .+..+.....+..+.-++..+ ++++|+.. +.+++||++..+..+......+ -.+..+.|.
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 87543 333444445566666677554 45558888 8899999986543322221111 124455666
Q ss_pred cCC-CeEEEEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeE-Eec-CC
Q 024676 155 HSD-QTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG-YNM-PC 228 (264)
Q Consensus 155 ~~~-~~~~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~-~~~-~~ 228 (264)
+.. ...++++..-+++|+||.+.++ ++..+. ..+++.++...|.++++.+++ -+.+..+|++.+..... |+. ..
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 542 4568888888999999999764 666665 357899999999999987776 47899999999887654 433 33
Q ss_pred CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
.+.++..+| ...+++++|.|++|||+|.++.+.+
T Consensus 292 sirsih~hp-~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 292 SIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CcceEEEcC-CCceEEeeccceeEEEeecccchhh
Confidence 455566666 5789999999999999999885543
No 214
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7.7e-14 Score=110.82 Aligned_cols=188 Identities=15% Similarity=0.206 Sum_probs=133.1
Q ss_pred cEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-CC-CCe
Q 024676 74 LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SS-GSI 148 (264)
Q Consensus 74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~-~~i 148 (264)
..+|++-..++|++||..++..+..+. ++..++.+.|.. ....+.+|+.||+||+||++......+.... +. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 567888889999999999988777765 455566666655 5678999999999999999876554443322 22 244
Q ss_pred EEEEEecCCCeEEEEee----CCCeEEEEECCCCce-eEEe--cCCCCEEEEEEcCCC-cEE-EEeCCCcEEEEECCCce
Q 024676 149 RTVAWLHSDQTILSSCT----DSGGVRLWDARSGKI-VQTL--ETKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFG 219 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~~~----~d~~v~iwd~~~~~~-~~~~--~~~~~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~ 219 (264)
.+++.+- ...+++.+. .+-.|.+||+|..+. +..+ .++..|+++.|+|+. .+| +++.||.+.++|++.-.
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 5555432 234555443 346799999999876 6555 356779999999976 444 45669999999997532
Q ss_pred ----eeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 220 ----LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 220 ----~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
+++.++....+-.+.|..+.-+.+.+-+..+...+|+++.|.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 2455555555556677765434588888899999999987764
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=6.2e-12 Score=99.30 Aligned_cols=172 Identities=13% Similarity=0.229 Sum_probs=125.2
Q ss_pred CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC-CcEEEEee---cCCeEEEEEECCCCCE
Q 024676 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDEKHSFE---HKHIVRACAFSEDTHL 116 (264)
Q Consensus 41 ~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~---~~~~v~~~~~~~~~~~ 116 (264)
..+.|||-.....+.++. -..+|.+|.+.++.--++. .+.|.+|...+ .+.++.++ .++.+.+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl---~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL---ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe---cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 468999977777777766 4578999999876543333 66899999874 34555554 2333333333333334
Q ss_pred EEEee-CCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe-EEEEECCCCceeEEecC---CCCE
Q 024676 117 LLTGG-FEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLET---KSPV 190 (264)
Q Consensus 117 l~s~~-~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~-v~iwd~~~~~~~~~~~~---~~~v 190 (264)
|+--+ .-|.+.+-|+..... ....+..|...|.+++.+- ++.++++++..|+ |||||.++|+.+.++.. +..+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 44323 358899999976554 3466778999999999775 5678889888885 89999999999888853 4569
Q ss_pred EEEEEcCCCcEEEEeCC-CcEEEEECCC
Q 024676 191 TSAEVSRDGRYITTADG-SSVKFWDANH 217 (264)
Q Consensus 191 ~~~~~s~~~~~l~~~~~-~~i~iwd~~~ 217 (264)
.+++||||+.++++++| ++++|+.++.
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999987665 8999998864
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.7e-12 Score=112.39 Aligned_cols=197 Identities=11% Similarity=0.120 Sum_probs=129.5
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeC---CCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEE-ecCCC--
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSAS-GSADF-- 83 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~---d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s-~s~D~-- 83 (264)
+..+..++...+|+| ||+.|+..+. +..+.+|++.+++.. ..+.+| +...+|+||++.++. .+.++
T Consensus 194 lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 194 VHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred eecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence 345666788899996 9998886653 346788899888643 234444 446789999988764 34454
Q ss_pred eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC-CcEEEe--eCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-KILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~i~~~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
.|.+||+.++.......+...+....|+|+++.|+.++.+ +...+| |+.+++. ..+...........|+|++..+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCEE
Confidence 5888999888765555555567788999999988776654 444555 6654432 2332233344567889888877
Q ss_pred EEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCC---cEEEEECCC
Q 024676 161 LSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGS---SVKFWDANH 217 (264)
Q Consensus 161 ~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~---~i~iwd~~~ 217 (264)
+.+...+ ..|.+||+++++... +.......+..|+|||++++.+ .++ .+.++++..
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 6665443 358889999887543 3222233467899999887653 333 367777743
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=2.7e-11 Score=102.31 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=132.3
Q ss_pred EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECC
Q 024676 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112 (264)
Q Consensus 33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 112 (264)
++++-..++++.+.|..+.+.++.+....+.-..+.|++|+++++.+++|+.|.++|+.+++.+.+++.......+++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 44666778999999999999999998654443447799999999888999999999999999999998888889999999
Q ss_pred CCCEEEEee-CCCcEEEeeCCCCCCCCeEecc------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCcee--EE
Q 024676 113 DTHLLLTGG-FEKILRIFDLNRPDAPPREVGN------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV--QT 183 (264)
Q Consensus 113 ~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~--~~ 183 (264)
++++++++. ..+.+.++|.++.+........ ....+..+..++....+++.-.+-++|-+.|....+.+ ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999999776 5799999998876543322111 12345566667776666666666688888898776543 34
Q ss_pred ecCCCCEEEEEEcCCCcEEEE-eC-CCcEEEEECCCceeee
Q 024676 184 LETKSPVTSAEVSRDGRYITT-AD-GSSVKFWDANHFGLVK 222 (264)
Q Consensus 184 ~~~~~~v~~~~~s~~~~~l~~-~~-~~~i~iwd~~~~~~~~ 222 (264)
+..........++|+++++.. .. ++.|-++|.++++.+.
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 455566788999999987644 33 4578888887765543
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=8.6e-13 Score=101.70 Aligned_cols=155 Identities=19% Similarity=0.320 Sum_probs=105.7
Q ss_pred eeEeccCCCCCeEEEEEeC---CC-------CcEEEeCCC-CceEEeeeC-CcCCEEEEEECCCCcEEE--EecCCCeEE
Q 024676 21 DLFYSPITPDGFFLVSASK---DS-------SPMLRNGET-GDWIGTFEG-HKGAVWSCCLDANALFSA--SGSADFTAK 86 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~---d~-------~v~i~~~~~-~~~~~~~~~-H~~~V~~v~~~~~~~~l~--s~s~D~~v~ 86 (264)
.+.|+| .|++|+.-.. |. ...+|-++. +.....+.- ..++|..++|+|++..++ +|..+..|.
T Consensus 10 ~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 578885 7766654433 22 233343321 223334433 346799999999998753 466788999
Q ss_pred EEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC---CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676 87 LWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (264)
Q Consensus 87 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (264)
|||+. ++.+..+. ...++.+.|+|+|++|+.++.+ |.+.+||.++.+.... . .......++|+|++.+++++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~--~-~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST--F-EHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec--c-ccCcEEEEEEcCCCCEEEEE
Confidence 99996 55556664 5678899999999999998754 5599999985443211 1 22346789999999988776
Q ss_pred eeC-----CCeEEEEECCCCceeEEe
Q 024676 164 CTD-----SGGVRLWDARSGKIVQTL 184 (264)
Q Consensus 164 ~~~-----d~~v~iwd~~~~~~~~~~ 184 (264)
.+. |..++||+.. |+.+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEec
Confidence 553 7889999985 6555543
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=2.1e-13 Score=105.06 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=91.9
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEE--EEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---Ce
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLV--SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FT 84 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~--t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~ 84 (264)
.+.....++|.+++|+| +|+.++ .|..+..+.+||++ ++.+.++. ...+..+.|+|+|++++.|+.+ |.
T Consensus 53 ~i~l~~~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 53 SIELKKEGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred eeeccCCCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 33344566899999997 676654 45577899999996 66666664 4677889999999999887644 67
Q ss_pred EEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC------CCcEEEeeCC
Q 024676 85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIFDLN 132 (264)
Q Consensus 85 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d~~i~~~d~~ 132 (264)
+.+||+.+.+.+...+|.. +..++|+|+|++++++.. |+.+++|+..
T Consensus 127 l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9999999888888887765 678999999999998763 7888999874
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=1.8e-12 Score=113.13 Aligned_cols=218 Identities=12% Similarity=0.124 Sum_probs=152.3
Q ss_pred CCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcE--E-----EEeecCCeEEEEEEC
Q 024676 41 SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE--K-----HSFEHKHIVRACAFS 111 (264)
Q Consensus 41 ~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~--~-----~~~~~~~~v~~~~~~ 111 (264)
+.+.+|+.... ..-..+. -..+|.+++|+|.. .+++.|..+|.|-+||+..+.. . ..-.|..++..+.|-
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 45788988765 3333343 24689999999854 6789999999999999987653 1 222477889999996
Q ss_pred CCCC--EEEEeeCCCcEEEeeCCCCCCCCeEe-----------ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE---C
Q 024676 112 EDTH--LLLTGGFEKILRIFDLNRPDAPPREV-----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD---A 175 (264)
Q Consensus 112 ~~~~--~l~s~~~d~~i~~~d~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd---~ 175 (264)
.+.. -+++++.||.|..|+++.-..+.... ......+.++.|.+.+...++.|+++|.|.-=+ .
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 6544 49999999999999876432211110 011234677888888888888999999988833 3
Q ss_pred CCCc-e----e-EEecCCCCEEEEEEcCCC-cEEEEeCCCcEEEEECC-CceeeeEEecCCC-CceeeEcCCCCCEEEEe
Q 024676 176 RSGK-I----V-QTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN-HFGLVKGYNMPCN-TESASLEPKLGNIFIAG 246 (264)
Q Consensus 176 ~~~~-~----~-~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 246 (264)
+.+. . + ....+..+|..+.++|=+ ++++++.|-+++||... ...++-.+.-+.. ....+|+|--...|+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 3332 1 1 112345789999999865 45555558899999987 5555555544433 45677887666799999
Q ss_pred cCCCeEEEEEcCc
Q 024676 247 GEDMWVHVFDFHT 259 (264)
Q Consensus 247 s~d~~v~vwd~~~ 259 (264)
..||.+.+||+..
T Consensus 461 d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQ 473 (555)
T ss_pred cCCCceehhhhhc
Confidence 9999999999864
No 221
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.4e-12 Score=104.77 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=118.5
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee---CCcCCEEEEEECCCCcEEEE-ecC-CCeEEEEeC
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSAS-GSA-DFTAKLWDA 90 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~---~H~~~V~~v~~~~~~~~l~s-~s~-D~~v~iwd~ 90 (264)
..+|.+|+++ .+.|+.+-.+. |.|||+.+.+++.++. .|...+.++++++.+.+++- ++. -|.|.+||+
T Consensus 87 pt~IL~VrmN-----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 87 PTSILAVRMN-----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred CCceEEEEEc-----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 4467777775 34555655544 9999999999888775 35556767777777778764 333 489999999
Q ss_pred CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCc-EEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKI-LRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
.+-.+...+. |+.++-+++|+++|.+|+|+|..|+ ||++.+.+++...+.. +.-...|.+++|.++.+. +++.++.
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~T 239 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNT 239 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe-EEEecCC
Confidence 9887777664 9999999999999999999999877 8999998887665543 334557888998887765 4445566
Q ss_pred CeEEEEECCCCc
Q 024676 168 GGVRLWDARSGK 179 (264)
Q Consensus 168 ~~v~iwd~~~~~ 179 (264)
++|.||-+++..
T Consensus 240 eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 240 ETVHIFKLEKVS 251 (391)
T ss_pred CeEEEEEecccc
Confidence 899999987654
No 222
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=2.2e-13 Score=116.29 Aligned_cols=205 Identities=22% Similarity=0.239 Sum_probs=144.1
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--E---EeeeCCcC-CEEEEEECCCCcEEEEecCCCe
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--I---GTFEGHKG-AVWSCCLDANALFSASGSADFT 84 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~---~~~~~H~~-~V~~v~~~~~~~~l~s~s~D~~ 84 (264)
++++|.+-|..+.|+|.. | .+|||||.|..|+||.+..|-- + ...-||++ .|.++.|+|...-+...+..++
T Consensus 74 ~l~~H~d~VtDl~FspF~-D-~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFA-D-ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccc-h-hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 568999999999999863 3 4789999999999998875421 1 11234544 6788999987655444455789
Q ss_pred EEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-CeEEEEEecCCCeEEE
Q 024676 85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQTILS 162 (264)
Q Consensus 85 v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~ 162 (264)
++|||+.+++.+..+ .|.+.|.+..|+.+|++|++.+.|+.|++||-+..-...+....|.+ .-.-+.|.-.-..++.
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlis 231 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIS 231 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhh
Confidence 999999998877665 48889999999999999999999999999998754333332233332 2233566644445676
Q ss_pred EeeCC---CeEEEEECCCC-ceeEEecC--CCCEEEEEEcCCCcEEE-Ee-CCCcEEEEECCC
Q 024676 163 SCTDS---GGVRLWDARSG-KIVQTLET--KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANH 217 (264)
Q Consensus 163 ~~~~d---~~v~iwd~~~~-~~~~~~~~--~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~ 217 (264)
+|.+. +.|++||.+.. ..+++++. ...+.---+.||.+++. ++ .++.+..+.+..
T Consensus 232 TGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 232 TGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred cccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 66532 57999999874 34555543 34455556888876543 33 346777777654
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.1e-12 Score=109.97 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=126.1
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCCeEEE
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFTAKL 87 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~~v~i 87 (264)
+..+..++...+|+| ||+.|+..+.+. .+.+||+.+++... +....+.+.+.+|+||+..++ +.+.++..+|
T Consensus 191 l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 191 ALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred eccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 346777888899996 999988877543 48889998887532 333334566789999998775 6788888777
Q ss_pred EeC--CCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CCcEEEeeC--CCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676 88 WDA--LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDL--NRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (264)
Q Consensus 88 wd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (264)
|.+ .++.......+........|+|+++.++..+. ++...+|.+ .++. ..............+|+|++..++.
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEecCCCCcCceEECCCCCEEEE
Confidence 754 44443322233334556789999998876654 456666654 3332 2222212223345678888887665
Q ss_pred EeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC--CC--cEEEEEC
Q 024676 163 SCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDA 215 (264)
Q Consensus 163 ~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iwd~ 215 (264)
+....+ .|.+||+.+++... +..........|+|||++|+... ++ .+.+.++
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 544433 69999999887543 32223345678999998875432 22 3555555
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.3e-13 Score=113.86 Aligned_cols=193 Identities=20% Similarity=0.281 Sum_probs=144.6
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE 100 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 100 (264)
.+.|+-.+. .+++.|+ -..|.-.++++|.++..|+-..+.+++|..++-..++++|..||.|.+||........++.
T Consensus 138 Dm~y~~~sc--Dly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 138 DMKYHKPSC--DLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred cccccCCCc--cEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 466665333 3443333 3457778999999999999888999999999999999999999999999987765444443
Q ss_pred -------cC-----CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe-EEEEeeCC
Q 024676 101 -------HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDS 167 (264)
Q Consensus 101 -------~~-----~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d 167 (264)
|. -.|+++.|..++-.++.|+.+|.+.+||+++.+........-.-++..+.|.+.++. .+++ .+.
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk 293 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDK 293 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cch
Confidence 11 138999999999999999999999999999876543332223457888888765433 4544 455
Q ss_pred CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCC
Q 024676 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH 217 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~ 217 (264)
..++|||-.+|+....++....++.+++-|++-++.. -++..+..|=+..
T Consensus 294 ~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred HHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 8999999999999998888888999999998755544 4455565554443
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.8e-11 Score=97.28 Aligned_cols=242 Identities=16% Similarity=0.169 Sum_probs=158.4
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC-CC---ce----------EEeeeCCcCCEEEEEECCCCc
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TG---DW----------IGTFEGHKGAVWSCCLDANAL 74 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~-~~---~~----------~~~~~~H~~~V~~v~~~~~~~ 74 (264)
+++.+--..-|.+++|.|.+. ..|+.|.+.|.+ +|... ++ .. +..-.|| .+|.+++|.+|+.
T Consensus 133 t~Lks~sQrnvtclawRPlsa--selavgCr~gIc-iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt 208 (445)
T KOG2139|consen 133 TKLKSVSQRNVTCLAWRPLSA--SELAVGCRAGIC-IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT 208 (445)
T ss_pred ceecchhhcceeEEEeccCCc--ceeeeeecceeE-EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC
Confidence 333345667899999999754 578888888765 66543 21 11 1122456 6899999999999
Q ss_pred EEEEecC-CCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEE
Q 024676 75 FSASGSA-DFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA 152 (264)
Q Consensus 75 ~l~s~s~-D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 152 (264)
.++++|- |..++|||..++..+... .-...+..+.|+|++.+++++.-|+..++|+........... -..+.+...+
T Consensus 209 ~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtac 287 (445)
T KOG2139|consen 209 ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTAC 287 (445)
T ss_pred EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeee
Confidence 9988765 468999999988655544 234568889999999999999999999999754332221222 2345888899
Q ss_pred EecCCCeEEEEeeCCCeEEEEECCC----C--------ceeE---Eec------C----CCCEEEEEEcCCCcEEEEeC-
Q 024676 153 WLHSDQTILSSCTDSGGVRLWDARS----G--------KIVQ---TLE------T----KSPVTSAEVSRDGRYITTAD- 206 (264)
Q Consensus 153 ~~~~~~~~~~~~~~d~~v~iwd~~~----~--------~~~~---~~~------~----~~~v~~~~~s~~~~~l~~~~- 206 (264)
|+|.+..++.+++. .-++|.+.- . +.+. .++ . ..++.+++|.|.|.+++..-
T Consensus 288 WspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 288 WSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred ecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 99999998888764 455665421 0 0110 010 0 24688999999999987642
Q ss_pred --C------CcEEEEECCCceeeeEE----ecCCCCceeeEc--CCCCCEEEEecCCCeEEEEEc
Q 024676 207 --G------SSVKFWDANHFGLVKGY----NMPCNTESASLE--PKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 207 --~------~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~gs~d~~v~vwd~ 257 (264)
+ ..|.+||.++.-.+.-. .....+.-++|. .+.+.+|..+=.-|.+.-|++
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 1 23677888765433222 112334444443 345677776666666666654
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=3.7e-11 Score=103.86 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=134.1
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (264)
.+.++|.... ..+.+..+...+...+|+||+++++.++.+ ..|.+||+.++.......+...+....|+|+++.|+
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 4566676533 344555677788999999999998766543 489999999886555444555667789999998776
Q ss_pred E-eeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEE
Q 024676 119 T-GGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (264)
Q Consensus 119 s-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~ 193 (264)
. .+.++ .|.+||+.++.. ..+..+........|++++..++.+....+ .|.++|+.+++..............
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP 327 (417)
T ss_pred EEECCCCCccEEEEECCCCCE--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence 4 44443 588888876532 223233333445678887777766554433 5788888887754333334456678
Q ss_pred EEcCCCcEEEEe-CCC---cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC---eEEEEEcC
Q 024676 194 EVSRDGRYITTA-DGS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFH 258 (264)
Q Consensus 194 ~~s~~~~~l~~~-~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~v~vwd~~ 258 (264)
.++|+|++++.. .+. .|.+||+.+... +.+..........+.++ +.+|+..+.++ .+++.+.+
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spd-g~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPN-GRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCC-CCEEEEEEeCCCcEEEEEEECC
Confidence 899999877653 332 688899877543 22222222334467774 66666655543 45555543
No 227
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=2.6e-12 Score=101.52 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=129.3
Q ss_pred ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADF 83 (264)
Q Consensus 7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D~ 83 (264)
+...++.-|...|++|.|+|.+ +.|++++.|+...+|.. ..+++..+ +..|..++.+|.|+|.+..+|+||.-+
T Consensus 46 ~~~htls~Hd~~vtgvdWap~s---nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar 122 (361)
T KOG1523|consen 46 EPAHTLSEHDKIVTGVDWAPKS---NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR 122 (361)
T ss_pred eeceehhhhCcceeEEeecCCC---CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence 4455667899999999999844 58999999999999998 66666554 456888999999999999999999999
Q ss_pred eEEEEeCCCCcEEE-----EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC-----CCCC--------CC----CeEe
Q 024676 84 TAKLWDALTGDEKH-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL-----NRPD--------AP----PREV 141 (264)
Q Consensus 84 ~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~-----~~~~--------~~----~~~~ 141 (264)
.|-+|=.+..+... ..++...|.++.|+|++-+|++|+.|+++|++.. +... .+ ..+.
T Consensus 123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 99999877665432 2345667999999999999999999999999863 1110 00 1112
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc
Q 024676 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179 (264)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~ 179 (264)
....+.+..+.|++++..+.-. +.|..+.+-|.....
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv-~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWV-GHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEe-cCCCceEEeecCCCc
Confidence 2345778999998877665544 556899999987664
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.3e-11 Score=100.24 Aligned_cols=248 Identities=14% Similarity=0.150 Sum_probs=164.7
Q ss_pred ceeecceEeecc--CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEe
Q 024676 4 RKVAVPLVCHGH--SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASG 79 (264)
Q Consensus 4 ~~~~~~~~~~~h--~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~ 79 (264)
++.++|+.+.+| ..-|-+|+|+- ..++|.+|..+++|+.-|+++.+.+..+. ..++.|+.+..+|....+++.
T Consensus 91 ~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 91 RKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred hcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE
Confidence 567889888764 45788999984 66899999999999999999988765553 245699999999999899999
Q ss_pred cCCCeEEEEeCCCCc-EEE---EeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCCeEeccC---CC---Ce
Q 024676 80 SADFTAKLWDALTGD-EKH---SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNS---SG---SI 148 (264)
Q Consensus 80 s~D~~v~iwd~~~~~-~~~---~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~---~~---~i 148 (264)
++++.|.+||..... ... .....+....+.|+|. ..+|++.+..+-+.+||++.+.....+.+.. .. ..
T Consensus 168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW 247 (609)
T ss_pred ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence 999999999987654 222 2223456778899995 5667777888889999998765433222221 11 22
Q ss_pred EEEEEecCCCeEEEEeeCCCeEEEEECCCCce-eEEecCC-------CCEEEEEEcCCCcEEEEeCCCcEEEEECCC---
Q 024676 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLETK-------SPVTSAEVSRDGRYITTADGSSVKFWDANH--- 217 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~-------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~--- 217 (264)
-.+.|+|++..+++- -....--+||+-+.++ +..+.++ ..+.+++|..|...++++++=.|++|.+..
T Consensus 248 M~~~~~~~G~Q~msi-RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMSI-RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred hheeeCCCCCeehhh-hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc
Confidence 446677766655543 3323455678877554 3333322 235566676665544445556899998842
Q ss_pred -ce--ee--------------eEE---ecC-CCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 218 -FG--LV--------------KGY---NMP-CNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 218 -~~--~~--------------~~~---~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
+. .+ +.+ ..+ .-+....|.+ -..++++.|....+++|.
T Consensus 327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheeccc
Confidence 11 01 111 111 1223445555 367888899999999995
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.49 E-value=4.6e-13 Score=103.15 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=119.1
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE----------EeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----------GTFEGHKGAVWSCCLDANALFSASGSADF 83 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~----------~~~~~H~~~V~~v~~~~~~~~l~s~s~D~ 83 (264)
+-.+.+.+..+...-..--+|++|..+|.+.+||+.++..+ .....|+++|.++.+.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 45566777764432122346788899999999999987432 33456999999999987666668888888
Q ss_pred eEEEEeCCCC--cEEE--EeecC-CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676 84 TAKLWDALTG--DEKH--SFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 84 ~v~iwd~~~~--~~~~--~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (264)
.+-+|.+.-. .... ....+ -.|..+..-|++++++|+++|+-||+|..++....... .-|.+.+.+++|+|+ .
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-kyHsagvn~vAfspd-~ 305 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-KYHSAGVNAVAFSPD-C 305 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-hhhhcceeEEEeCCC-C
Confidence 8999987543 2111 11222 24788899999999999999999999999887654433 346689999999875 5
Q ss_pred eEEEEeeCCCeEEEEEC
Q 024676 159 TILSSCTDSGGVRLWDA 175 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~ 175 (264)
.+++.++.|++|.+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 57888899999999987
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.1e-11 Score=100.44 Aligned_cols=235 Identities=14% Similarity=0.178 Sum_probs=158.8
Q ss_pred ccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcC------------------------------
Q 024676 14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKG------------------------------ 62 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~------------------------------ 62 (264)
+|...-+.|..+| ||+|| |+|.+--.|++||+....+. |+.|.+
T Consensus 49 e~p~ast~ik~s~---DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSP---DGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecC---CCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 5666666777774 99876 66667778999988654321 221211
Q ss_pred -------CE----EEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecC-CeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676 63 -------AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFD 130 (264)
Q Consensus 63 -------~V----~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d 130 (264)
.| +.++++.-..-|..++....|.-.++++|.-+..++.. .+++.|..++...+|++|+.++.+-.||
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 11 11222211211222222334666677777766666644 6799999999999999999999999999
Q ss_pred CCCCCCCCeEe-----ccC-----CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--CCCEEEEEEcCC
Q 024676 131 LNRPDAPPREV-----GNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRD 198 (264)
Q Consensus 131 ~~~~~~~~~~~-----~~~-----~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~ 198 (264)
.+..+.....- ..+ ...++++.|..+ +..++.|...|.|.|||+|+.+++..-.+ .-||..+.|-+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 87544322111 111 224888888754 56677788889999999999998765444 457889999766
Q ss_pred --CcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676 199 --GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 199 --~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vw 255 (264)
+.-+++.+...++|||-.+++........+...-+++.|. +-+|.+|-++..+..|
T Consensus 283 ~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~-sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 283 DQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPG-SGMFFTANESSKMHTY 340 (703)
T ss_pred CCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecC-CceEEEecCCCcceeE
Confidence 3567777778999999999887766666666677788874 6688888888777665
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=116.56 Aligned_cols=146 Identities=20% Similarity=0.301 Sum_probs=118.1
Q ss_pred CCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE--EeecCCeE
Q 024676 28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIV 105 (264)
Q Consensus 28 ~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~v 105 (264)
+++..++++|+.-+.+++|...-...--.+.||++.+.++.++.|+.+++|.|.|.++|+|++.+++... .+.|...|
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence 3567899999999999999886222111588999999999999999999999999999999999987554 56799999
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 106 ~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 177 (264)
..+++.|+ .+++++.|.+.++|+.+..+.. ....+....++.++. +.+..+.+++.+|+.+++||+..
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAV-PIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEE-cCCceEEEeeccCcchhhhhhhc
Confidence 99999999 8999999999999977644332 222334556787775 45677888889999999999754
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2e-12 Score=107.19 Aligned_cols=242 Identities=17% Similarity=0.246 Sum_probs=167.8
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCce--EEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDW--IGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLW 88 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~--~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iw 88 (264)
.||..-|-+-+|.|.+. -+.+++++.||++++-.+ .++.+ ...+..|+++|+.++..|+..+ |.|++.|+.++-.
T Consensus 182 SGH~~NvfQaKFiP~s~-d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 182 SGHCNNVFQAKFIPFSG-DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI 260 (559)
T ss_pred cccccchhhhhccCCCC-CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence 48999999999999874 467899999999999654 33332 3445669999999999998754 7899999999999
Q ss_pred eCCCCcEEEEe---e-cCC---eEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCC-----------CeEeccCCCCeE
Q 024676 89 DALTGDEKHSF---E-HKH---IVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAP-----------PREVGNSSGSIR 149 (264)
Q Consensus 89 d~~~~~~~~~~---~-~~~---~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~-----------~~~~~~~~~~i~ 149 (264)
|+.++.+...+ + +.. ....++.+|-. ..+++++.|...++||.+.-... ..........|+
T Consensus 261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 98877543322 2 222 35678889954 47888999999999998643211 111112234689
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCC--C----------ceeEE-ecCCC---CEEEE-EEcCCCcEEEEeCC-CcEE
Q 024676 150 TVAWLHSDQTILSSCTDSGGVRLWDARS--G----------KIVQT-LETKS---PVTSA-EVSRDGRYITTADG-SSVK 211 (264)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~----------~~~~~-~~~~~---~v~~~-~~s~~~~~l~~~~~-~~i~ 211 (264)
+++|++++.-++++-. |..|.++...- | ..+.. ++++. -|-.+ .|-|...|+++++| |.|-
T Consensus 341 gl~Ysh~~sElLaSYn-De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYN-DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred eEEecCCccceeeeec-ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence 9999987776776654 47899984322 2 11111 33321 13333 46788899999888 8999
Q ss_pred EEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 212 FWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 212 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
||+..+.++++-....... +++-.+| .--+|++.|-|.-|+||-.
T Consensus 420 iW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 420 IWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred EEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecC
Confidence 9999988877655443332 2333344 4568999999999999965
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=1.3e-12 Score=109.63 Aligned_cols=92 Identities=21% Similarity=0.364 Sum_probs=83.8
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 97 (264)
+|+..+|+| ||++||+.|.||.+||++..+.+++..++..-+...||+|+||++++++|+.|-.|.||.+..++.++
T Consensus 292 ~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 292 SINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 889999996 99999999999999999999888887777777889999999999999999999999999999887766
Q ss_pred Ee-ecCCeEEEEEECC
Q 024676 98 SF-EHKHIVRACAFSE 112 (264)
Q Consensus 98 ~~-~~~~~v~~~~~~~ 112 (264)
.- .|+.-|..|+|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 64 3888999999997
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=5.3e-11 Score=94.69 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=149.5
Q ss_pred eeeeEeccCCCCCeE-EEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEEeCCCCcEE
Q 024676 19 VVDLFYSPITPDGFF-LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGDEK 96 (264)
Q Consensus 19 v~~~~~~~~~~~g~~-l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~ 96 (264)
|.-|.|.. |..+ |...+.|+.|++|++.+.++...+..-.+++.+++|+|||+. +.+..-|-.+.+|.+.+....
T Consensus 51 i~yieW~a---ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 51 IVYIEWKA---DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred hhheeeec---cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 45577774 4444 455678889999999999998888877788999999999965 578889999999999887654
Q ss_pred EEeecCCeEEEEEECCCCCEEEEeeCCCcEE--------Ee------eCCCCCCCCe--------------------Eec
Q 024676 97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILR--------IF------DLNRPDAPPR--------------------EVG 142 (264)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~--------~~------d~~~~~~~~~--------------------~~~ 142 (264)
...-.+..+..++|+|++++.+.++...+.- -| ++++....-. ...
T Consensus 128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 4333344567888888888877665432211 11 1111100000 011
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--------------------------------e---------
Q 024676 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--------------------------------V--------- 181 (264)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--------------------------------~--------- 181 (264)
...-.+..+.|+|.++ +++.|+.|+.+||.+--+-+. +
T Consensus 208 e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 1112356678888665 566778889988853211000 0
Q ss_pred -------------------EEec-------CCCCEEEEEEcCCCcEEEEeCC---CcEEEEECCCceeeeEEecCCCCce
Q 024676 182 -------------------QTLE-------TKSPVTSAEVSRDGRYITTADG---SSVKFWDANHFGLVKGYNMPCNTES 232 (264)
Q Consensus 182 -------------------~~~~-------~~~~v~~~~~s~~~~~l~~~~~---~~i~iwd~~~~~~~~~~~~~~~~~~ 232 (264)
+.++ ....+..++|++|..|+++-+| +.+.+||+++.+....+.-..+...
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pira 366 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRA 366 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeE
Confidence 0000 0013566899999999998776 4689999998765333322445566
Q ss_pred eeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 233 ASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
+.+.|...+++++-|. ..+++|-.
T Consensus 367 f~WdP~~prL~vctg~-srLY~W~p 390 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGK-SRLYFWAP 390 (447)
T ss_pred EEeCCCCceEEEEcCC-ceEEEEcC
Confidence 7788866666665444 44888864
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=5.8e-10 Score=88.32 Aligned_cols=229 Identities=13% Similarity=0.197 Sum_probs=145.6
Q ss_pred eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCC------CeEEEEeCCC
Q 024676 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSAD------FTAKLWDALT 92 (264)
Q Consensus 20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D------~~v~iwd~~~ 92 (264)
..+.|+. |..-++.|. |.-.+||+.+..+....-.-+.+...-+..--...++ ..|+.+ ..|.|||=..
T Consensus 9 lsvs~NQ---D~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 9 LSVSFNQ---DHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eEEEEcc---CCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 3478884 544455554 4456899876533211111111111111111122222 233333 5899999777
Q ss_pred CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe---ccCCCCeEEEEEecCCCe-EEE-EeeCC
Q 024676 93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQT-ILS-SCTDS 167 (264)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~-~~~-~~~~d 167 (264)
..++.++....+|..+.+.++. ++. -..+.|++|.....-.....+ .+.+| + ++..|.... +++ -+-.-
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~r--iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkG-l--C~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRDR--IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKG-L--CSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred CcEEEEEEeccceeeEEEcCCe--EEE-EecCeEEEEEcCCChhheeeeecccCCCc-e--EeecCCCCceEEEcCCCcc
Confidence 7888889999999999998774 333 356889999876322222222 22333 2 333443333 232 23345
Q ss_pred CeEEEEECCCCce---eEEecCCCCEEEEEEcCCCcEEEEeC-CC-cEEEEECCCceeeeEEecC---CCCceeeEcCCC
Q 024676 168 GGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTAD-GS-SVKFWDANHFGLVKGYNMP---CNTESASLEPKL 239 (264)
Q Consensus 168 ~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~ 239 (264)
|.|+|-|+...+. .....+.+.|.+++++.+|.++++++ .| -|||||.++++.+..+.-. ....+++|+|+
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~- 237 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN- 237 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC-
Confidence 8999999987665 33345678899999999999988765 44 5899999999999888653 34556788884
Q ss_pred CCEEEEecCCCeEEEEEcCc
Q 024676 240 GNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 240 ~~~~~~gs~d~~v~vwd~~~ 259 (264)
..+|+++|.-|++++|.+..
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 89999999999999997653
No 236
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=2.6e-12 Score=107.77 Aligned_cols=136 Identities=17% Similarity=0.209 Sum_probs=100.7
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--------------Cce--EEeeeCC------------cCCEEEEE
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------------GDW--IGTFEGH------------KGAVWSCC 68 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--------------~~~--~~~~~~H------------~~~V~~v~ 68 (264)
..|.+|+|-|..+ ..++.+-.+|...++|.+- +.. +.+-..| ++.|+..+
T Consensus 220 tsvT~ikWvpg~~--~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGSD--SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cceEEEEEEeCCC--ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 5789999999643 3556778889888885421 111 1111111 34678899
Q ss_pred ECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCC
Q 024676 69 LDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS 147 (264)
Q Consensus 69 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 147 (264)
|++|+++||+.|+||.+||+|..+.+.+...+ --....+|+|+|+++++++|+.|.-+.+|.+...+....-. .|+..
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-GHkSW 376 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-GHKSW 376 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-ccccc
Confidence 99999999999999999999988765443332 23468899999999999999999999999997665544433 57889
Q ss_pred eEEEEEec
Q 024676 148 IRTVAWLH 155 (264)
Q Consensus 148 i~~~~~~~ 155 (264)
|..++|-|
T Consensus 377 Vs~VaFDp 384 (636)
T KOG2394|consen 377 VSVVAFDP 384 (636)
T ss_pred eeeEeecc
Confidence 99998854
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4e-10 Score=97.90 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=126.2
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCC--
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF-- 83 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~-- 83 (264)
.....+..++....|+| ||++|+..+.+. .+.+|++.+++... +....+.+...+|+||+++++ +.+.++
T Consensus 192 ~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~ 267 (430)
T PRK00178 192 VTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNP 267 (430)
T ss_pred eEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence 34445677788888886 999888776542 47778998886432 322334455688999998775 555555
Q ss_pred eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
.+.+||+.++.......+........|+|+++.++..+. ++ .|.++++.+++.. .+...........|+|++..+
T Consensus 268 ~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 268 EIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred eEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCCccceEECCCCCEE
Confidence 577789988765544344444556789999988776554 33 4666777655432 221112223446788888877
Q ss_pred EEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC--CC--cEEEEECCC
Q 024676 161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANH 217 (264)
Q Consensus 161 ~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iwd~~~ 217 (264)
+.+...++ .|.+||+.+++... +..........|+|||++++.+. ++ .+.++++..
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 66654443 58889999886533 22221223458999998875432 22 466667643
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=2.5e-10 Score=98.73 Aligned_cols=188 Identities=17% Similarity=0.133 Sum_probs=122.8
Q ss_pred eEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCC--
Q 024676 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF-- 83 (264)
Q Consensus 10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~-- 83 (264)
..+..+...+...+|+| ||++|+.++.++ .+.+|++.+++.. .+..+.+.+.+++|+||++.++ +.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 183 QTITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred EEeecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 34445666677777875 999998877543 6888999888643 3334556677789999998664 555554
Q ss_pred eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC-C--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
.+.+||+.++.......+........|+|+++.|+.++.. + .|.++|+.+++. ..+...........|+|++..+
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV--RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccCeEECCCCCEE
Confidence 5888898887654444444444566899999988766543 3 467777765442 2232234455667888887776
Q ss_pred EEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE
Q 024676 161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT 204 (264)
Q Consensus 161 ~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 204 (264)
+.+..+.+ .|.+||+.++.... +..........|+|||++|+.
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILY 381 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEE
Confidence 66554322 78899998865432 222223345689999987654
No 239
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=2.9e-09 Score=88.55 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=143.6
Q ss_pred CCCCeEEEEEeC----------CCCcEEEeCCCCceEEeeeCCc-------CCEEEEEECCCCcEEEEec--CCCeEEEE
Q 024676 28 TPDGFFLVSASK----------DSSPMLRNGETGDWIGTFEGHK-------GAVWSCCLDANALFSASGS--ADFTAKLW 88 (264)
Q Consensus 28 ~~~g~~l~t~s~----------d~~v~i~~~~~~~~~~~~~~H~-------~~V~~v~~~~~~~~l~s~s--~D~~v~iw 88 (264)
+|||+.|..+.. +..|.+||..+++.++++.--. ..-..+++++|+++++... -+..|-+.
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~Vv 133 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVV 133 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEE
Confidence 358887776665 7789999999999988875311 1224688999999887554 37899999
Q ss_pred eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe---EeccC-CCCeEE-EEEecCCCeEEEE
Q 024676 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNS-SGSIRT-VAWLHSDQTILSS 163 (264)
Q Consensus 89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~---~~~~~-~~~i~~-~~~~~~~~~~~~~ 163 (264)
|+.+++.+..+.-.........++.... +-+.|+......+++...... ..... ..++.. -.+.+.++..+..
T Consensus 134 D~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v 211 (352)
T TIGR02658 134 DLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP 211 (352)
T ss_pred ECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence 9999998888775554433333333322 123444443333322111000 00000 000000 0234423444434
Q ss_pred eeCCCeEEEEECCCCc-----eeEEecC--------CCCEEEEEEcCCCcEEEE-eC----------CCcEEEEECCCce
Q 024676 164 CTDSGGVRLWDARSGK-----IVQTLET--------KSPVTSAEVSRDGRYITT-AD----------GSSVKFWDANHFG 219 (264)
Q Consensus 164 ~~~d~~v~iwd~~~~~-----~~~~~~~--------~~~v~~~~~s~~~~~l~~-~~----------~~~i~iwd~~~~~ 219 (264)
... |.|.+.|+.+.. ....+.. ...+.-++++|+++.+.. .. ++.|.++|..+++
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 344 999999965432 2222211 112344999999865432 21 2579999999999
Q ss_pred eeeEEecCCCCceeeEcCCCC-CEEEEecCCCeEEEEEcCcceee
Q 024676 220 LVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~-~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
.+..+.....+..+.++++.. .++++...++.|.++|+.+++.+
T Consensus 291 vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 291 RLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999998887888888988644 34445557888999999999876
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=7.5e-09 Score=87.23 Aligned_cols=237 Identities=17% Similarity=0.246 Sum_probs=150.8
Q ss_pred eeEeccCCCCCeEEEEEeC----CCCcEEEeCCC--Cce--EEeeeCCcCCEEEEEECCCCcEEEEec-CCCeEEEEeCC
Q 024676 21 DLFYSPITPDGFFLVSASK----DSSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDAL 91 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~----d~~v~i~~~~~--~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s-~D~~v~iwd~~ 91 (264)
-|.++| ++++|.+... ++.|..|.+.. +++ +.........-..+++++++.+++++. .+++|.++++.
T Consensus 41 ~l~~~~---~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 41 WLAVSP---DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp CEEE-T---TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEe---CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 456664 8888888877 45777776554 443 333331222334589999999887664 58999999997
Q ss_pred C-CcEEE---Eeec-----------CCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCe----EeccCCCCeEEE
Q 024676 92 T-GDEKH---SFEH-----------KHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPR----EVGNSSGSIRTV 151 (264)
Q Consensus 92 ~-~~~~~---~~~~-----------~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~----~~~~~~~~i~~~ 151 (264)
. +.... .+.+ ......+.++|+++++++... ...|.+|+++....... .........+.+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 7 33222 2211 234678899999999888654 36799999876542221 122344567888
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECC--CCce--eEEecC-------CCCEEEEEEcCCCcEEEEeC--CCcEEEEECC--
Q 024676 152 AWLHSDQTILSSCTDSGGVRLWDAR--SGKI--VQTLET-------KSPVTSAEVSRDGRYITTAD--GSSVKFWDAN-- 216 (264)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~--~~~~~~-------~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~-- 216 (264)
+|.|++..+.+.+-.+++|.++++. +++. +..+.. ......+.++|||++|-.+. .+.|.+|++.
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 9999888888887788999999988 4432 222221 12578899999999875543 4689999983
Q ss_pred C--ceeeeEEec-CCCCceeeEcCCCCCEEE-EecCCCeEEEEEc--Ccce
Q 024676 217 H--FGLVKGYNM-PCNTESASLEPKLGNIFI-AGGEDMWVHVFDF--HTGE 261 (264)
Q Consensus 217 ~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~gs~d~~v~vwd~--~~g~ 261 (264)
+ .+.+..+.. ...+..+.+.++ |++|+ +...++.|.+|++ ++|.
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCCCCc
Confidence 2 244555554 344677788875 56555 5557789999965 4665
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=9e-10 Score=95.69 Aligned_cols=212 Identities=14% Similarity=0.093 Sum_probs=131.9
Q ss_pred cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-
Q 024676 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL- 118 (264)
Q Consensus 43 v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 118 (264)
+.++|...+. .+.+..+...+....|+||++.++..+.+ ..+.+||+.+++..........+....|+|+++.|+
T Consensus 181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 5556665443 34555577788999999999988765533 368889998887554433344455688999998776
Q ss_pred EeeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEE
Q 024676 119 TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAE 194 (264)
Q Consensus 119 s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~ 194 (264)
+...++ .|.++|+.+++. ..+...........|+|++..++.+...++ .|.++|+.+++...............
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR 337 (430)
T ss_pred EEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence 444444 577889876543 233333344556688988887766654433 57777888877543222222234568
Q ss_pred EcCCCcEEEEeC--CC--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC-C--CeEEEEEcCc
Q 024676 195 VSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-D--MWVHVFDFHT 259 (264)
Q Consensus 195 ~s~~~~~l~~~~--~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-d--~~v~vwd~~~ 259 (264)
|+|+|+.++... ++ .|.+||+.+++. +.+..........+.|+ |++++..+. + ..++++++..
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spd-g~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPN-GTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCC-CCEEEEEEecCCceEEEEEECCC
Confidence 999998876532 22 578899887653 22322222234567775 666665443 2 3466667643
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.8e-09 Score=93.46 Aligned_cols=201 Identities=15% Similarity=0.058 Sum_probs=119.3
Q ss_pred CeeeeEeccCCCCCeE---EEEEeCCCC--cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec-C----CCeEEE
Q 024676 18 PVVDLFYSPITPDGFF---LVSASKDSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-A----DFTAKL 87 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~---l~t~s~d~~--v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s-~----D~~v~i 87 (264)
++..=+|+| ||+. +.+...++. |.+.++.+++.. .+....+.....+|+|||+.++..+ . |..+.+
T Consensus 186 ~~~sP~wSP---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 186 LSITPTWMH---IGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CcccceEcc---CCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 334446664 8864 235555554 444577776532 2222334455678999998876433 2 334555
Q ss_pred EeCCCC---cEEEEeecC-CeEEEEEECCCCCEEEEee-CCCcEEEee--CCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676 88 WDALTG---DEKHSFEHK-HIVRACAFSEDTHLLLTGG-FEKILRIFD--LNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 88 wd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~s~~-~d~~i~~~d--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
|++.++ ......... .......|+|+++.|+..+ .++...+|. ++........+......+....|+|++..+
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 776653 323332222 2335678999999777665 456555554 432111223333334456678899988877
Q ss_pred EEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eC---CCcEEEEECCCceeee
Q 024676 161 LSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGLVK 222 (264)
Q Consensus 161 ~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~---~~~i~iwd~~~~~~~~ 222 (264)
+.+...+ ..|.+||+.+++..........+....|+|||+.|+. +. ...|.++|+..++...
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 6665443 3699999999876543333335677899999987653 32 2468888987765433
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.7e-10 Score=92.84 Aligned_cols=189 Identities=11% Similarity=0.160 Sum_probs=125.8
Q ss_pred CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCC-
Q 024676 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAP- 137 (264)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~- 137 (264)
..++.++|++.-..++.+.-|-+||+||-.... -..+. ....|.+++|-|.+ +.++.|+. +.|.+|.....-..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 456889999866667888999999999976632 22232 34579999999965 44555555 55788975321100
Q ss_pred -----------CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEE-E
Q 024676 138 -----------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYIT-T 204 (264)
Q Consensus 138 -----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~ 204 (264)
.....+..-+|..++|.+++..++.++..+..|.|||..++..+... .....+..+.|||||.++. +
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 00111122468999999887766666667889999999999876544 3445688999999997754 4
Q ss_pred eCCCcEEEEEC-CCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeE
Q 024676 205 ADGSSVKFWDA-NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV 252 (264)
Q Consensus 205 ~~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v 252 (264)
.-|+..++|+. +.....+-...+......+++|++..+|.+.+..-.+
T Consensus 257 t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 55899999954 3343333333344555678888755555566555433
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.7e-09 Score=94.15 Aligned_cols=212 Identities=13% Similarity=0.079 Sum_probs=125.9
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC-CC--eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~-D~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (264)
.+.++|..... .+.+-.+...+....|+||++.++..+. ++ .|.+||+.+++...............|+|+++.|+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 34445654332 3345456678888999999998876543 33 58888988876543332233345678999999776
Q ss_pred E-eeCCCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEE
Q 024676 119 T-GGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (264)
Q Consensus 119 s-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~ 193 (264)
. ...++. |.++|+++++. ..+..+.......+|+|++..++.+...++ .|.++|+.+++..............
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~ 355 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG 355 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence 4 455564 67778776542 333333344566789998887776655444 4666788887754322122223356
Q ss_pred EEcCCCcEEEEe-C-CC--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-ecCCCe--EEEEEcC
Q 024676 194 EVSRDGRYITTA-D-GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGEDMW--VHVFDFH 258 (264)
Q Consensus 194 ~~s~~~~~l~~~-~-~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~d~~--v~vwd~~ 258 (264)
.|+|||++++.. . ++ .|.++|+.+++.. .+..........+.|+ |++++. ...++. +++++.+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spd-G~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPN-GTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCC-CCEEEEEEecCCceEEEEEECC
Confidence 899999877543 2 33 4556787766532 2221112223467775 555554 434443 6667764
No 245
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.36 E-value=3.1e-12 Score=105.59 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=136.0
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 96 (264)
.+|..|.|-| .-.+|++++..|-+..-|+.+|+.+..|..-.+.+..++-.|-+..+-+|-..|+|-+|.-...+++
T Consensus 210 ~~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 210 IRVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred Cchhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 4577788886 6678999999999999999999999988877888888999998888999999999999998887765
Q ss_pred EE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE-
Q 024676 97 HS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD- 174 (264)
Q Consensus 97 ~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd- 174 (264)
.. +.|..+|.+++++++|++++|++.|+.++|||++.-........++ +...++++. ..+++.+.. ..|.||-
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~--~a~~ls~Sq--kglLA~~~G-~~v~iw~d 361 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH--PASNLSLSQ--KGLLALSYG-DHVQIWKD 361 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC--Ccccccccc--ccceeeecC-Ceeeeehh
Confidence 54 5799999999999999999999999999999998765433333222 334455553 335554444 5899994
Q ss_pred CCCCc--e-eEEe--cCCCCEEEEEEcCCCcEEEEe
Q 024676 175 ARSGK--I-VQTL--ETKSPVTSAEVSRDGRYITTA 205 (264)
Q Consensus 175 ~~~~~--~-~~~~--~~~~~v~~~~~s~~~~~l~~~ 205 (264)
.-.+. . ..-+ ....+|..+.|.|-...|-.+
T Consensus 362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIG 397 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIG 397 (545)
T ss_pred hhcCCCCCCcchhhhccCcccccceeccHHHeeecc
Confidence 32211 1 1111 223578999999866555443
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=9.3e-10 Score=95.81 Aligned_cols=196 Identities=13% Similarity=0.057 Sum_probs=119.5
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCC-C--CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCCe--EEE
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKD-S--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFT--AKL 87 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d-~--~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~~--v~i 87 (264)
.+..++....|+| ||++|+..+.+ + .+.++|+.+++... +..-.+.....+|+||++.++ +.+.++. |.+
T Consensus 215 ~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 215 RSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred cCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 3455667788885 99988876543 3 46677888876432 221122334678999998775 5666775 666
Q ss_pred EeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 88 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
+|+.+++......+........|+|+++.++..+. ++ .+.++|+.+++. ..+..........+|+|++..++.+.
T Consensus 291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEEecCCCCCcCeeECCCCCEEEEEE
Confidence 78887765444444445567789999998876553 33 455667765542 22211122233457888888776665
Q ss_pred eCCCe--EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe--CCC--cEEEEECC
Q 024676 165 TDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGS--SVKFWDAN 216 (264)
Q Consensus 165 ~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~--~i~iwd~~ 216 (264)
..++. |.++|+.+++... +..........|+|||+.++.+ .++ .+.+++..
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 55554 5557888876533 2221122244799999876542 333 36666763
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=5.3e-10 Score=87.70 Aligned_cols=246 Identities=13% Similarity=0.113 Sum_probs=154.4
Q ss_pred CCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCceEEeee---CCcCC---EEEEEECCCCcEEEEecCCCeEEEE
Q 024676 16 SRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFE---GHKGA---VWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~---~H~~~---V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
+..+..+.|.-.-.+|. .|+-+.++|.++++...-.+-...|+ +.+-. -.++.|++-+..++++-.+|.+-+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 44456777776556676 67788889999988554333222332 22222 2456778888888888888888855
Q ss_pred eCCCCcEEE--Ee-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCC-CCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676 89 DALTGDEKH--SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSS 163 (264)
Q Consensus 89 d~~~~~~~~--~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (264)
+........ .+ .|+-+...+.|+. +.+++++|+.|+.+.-||++.+. ...+....|...|.++.-+|+.++++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 544333222 33 3777888888877 45789999999999999998443 2223233466678888878888899999
Q ss_pred eeCCCeEEEEECC-CCceeEEecCCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCc--e---eeeEEecCCC-Cceee
Q 024676 164 CTDSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHF--G---LVKGYNMPCN-TESAS 234 (264)
Q Consensus 164 ~~~d~~v~iwd~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~--~---~~~~~~~~~~-~~~~~ 234 (264)
|+.|..|++||.| -++++..-.....|-.+..+|.- +++++.=-+..+|-+.... + ....++.+.. ..-..
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence 9999999999999 57777666666778888888853 2333332223444444322 1 1122222211 11122
Q ss_pred EcCCCCCEEEEe-cCCCeEE-EEEcCccee
Q 024676 235 LEPKLGNIFIAG-GEDMWVH-VFDFHTGEQ 262 (264)
Q Consensus 235 ~~~~~~~~~~~g-s~d~~v~-vwd~~~g~~ 262 (264)
+... ..+|+|+ ..|+.++ +|-.-+|+.
T Consensus 309 Wd~~-~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 309 WDSK-DSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred cccc-cceeeeeeccccceeeeeeeccCCc
Confidence 3222 3456764 4588766 887666664
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=98.20 Aligned_cols=218 Identities=17% Similarity=0.230 Sum_probs=138.1
Q ss_pred eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEee
Q 024676 22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFE 100 (264)
Q Consensus 22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~ 100 (264)
+.|+ |+|+++|+++.- .+-|.|.++.+..+-|.. -+.|.-+.|..|..++ .....|+.|.+|++.+.+-...+.
T Consensus 14 c~fS---p~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 14 CSFS---PCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred eeEC---CCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 4566 599999999877 455778877765444332 3566778999998875 567889999999998877555553
Q ss_pred -cCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676 101 -HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 101 -~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 178 (264)
...++...+|+|++ .+|.+...+-.|.+|.+.+.... .+...+..+..+++.++++ +.+-++.-.......+...
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSC 165 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhh
Confidence 45678899999999 55556678999999999875432 2333444556778777665 4444443111111111111
Q ss_pred ---ceeEEecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEE
Q 024676 179 ---KIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHV 254 (264)
Q Consensus 179 ---~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~v 254 (264)
+.+..+... -....+.|+|||..++. ||.--.-.+-.|.-.-......+.| .+++++.|+.|+.+|+
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laV--------wd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------WDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEE--------ecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhh
Confidence 112223222 23567899999877765 3321111111233233344556777 4899999999999998
Q ss_pred EE
Q 024676 255 FD 256 (264)
Q Consensus 255 wd 256 (264)
-|
T Consensus 237 ln 238 (447)
T KOG4497|consen 237 LN 238 (447)
T ss_pred hc
Confidence 76
No 249
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.32 E-value=1.1e-08 Score=97.11 Aligned_cols=236 Identities=11% Similarity=0.131 Sum_probs=151.3
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC--C------------cCCEEEEEECCCCcEE-EEecCCCeE
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--H------------KGAVWSCCLDANALFS-ASGSADFTA 85 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H------------~~~V~~v~~~~~~~~l-~s~s~D~~v 85 (264)
.++.++ .+|+..++-+..+.|+++|.. +..+..+.+ . -..-..+++++++..+ ++-...+.|
T Consensus 572 gvavd~--~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDL--LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred eEEEEC--CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 456654 246677777888889999875 544444432 1 1124678998877644 445556789
Q ss_pred EEEeCCCCcEEEEeec------------------CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEec----
Q 024676 86 KLWDALTGDEKHSFEH------------------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG---- 142 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---- 142 (264)
+.+|..++... ++.. -.....++++| ++.++++.+.++.|++||...+... ...+
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 99998776432 2210 01235789999 5666666677889999998654321 0000
Q ss_pred ----------cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec--------------C--------CCCE
Q 024676 143 ----------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------------T--------KSPV 190 (264)
Q Consensus 143 ----------~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------------~--------~~~v 190 (264)
..-.....+++.+++..++++...++.|++||++++....... . ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0012345688888888788787888999999998765321110 0 0123
Q ss_pred EEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC--------------CCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676 191 TSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 191 ~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~gs~d~~v~vw 255 (264)
..++++++|.++++ ..++.|++||..++......... ..+..+++.+ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 57889999976665 44679999999877654322111 1233455666 47899999999999999
Q ss_pred EcCccee
Q 024676 256 DFHTGEQ 262 (264)
Q Consensus 256 d~~~g~~ 262 (264)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988764
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=8.2e-12 Score=105.51 Aligned_cols=203 Identities=18% Similarity=0.272 Sum_probs=141.3
Q ss_pred EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC-------cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcE
Q 024676 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKIL 126 (264)
Q Consensus 55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i 126 (264)
..|.||...|++++--.+..-++++|.|++||+|.+... .+..++ .|+.+|..+.|-.+.+.+++ -|+.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 457899999999887777777899999999999987542 244555 48899999988888777764 57899
Q ss_pred EEeeCCCCCCCC-eEeccCCCCeEEEEEecC-CCe-EEEEeeCCCeEEEEECCCCceeEEecC------CCCEEEEEEcC
Q 024676 127 RIFDLNRPDAPP-REVGNSSGSIRTVAWLHS-DQT-ILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVSR 197 (264)
Q Consensus 127 ~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~~s~ 197 (264)
.+||--.+.... ....+..+....+...++ +.. +++.|+...+||++|.|.++-...++. +..+.++++.+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999965444332 222222333333333333 444 455668888999999999886655532 23478999999
Q ss_pred CCcEEEEe-CCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEE-EEcCcce
Q 024676 198 DGRYITTA-DGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHV-FDFHTGE 261 (264)
Q Consensus 198 ~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~v-wd~~~g~ 261 (264)
.|+.++++ +.|.|-+.|.|++..+..+.- .|.....+ .+..+.++....|..+-+ |....|.
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccceeEeeehhcCCe
Confidence 99877654 578999999999998887743 44433322 223566777777888888 8765554
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.4e-09 Score=90.98 Aligned_cols=219 Identities=13% Similarity=0.040 Sum_probs=125.9
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE--E-EEecCCC--eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-ASGSADF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~--l-~s~s~D~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (264)
.+.+.|...+.. +.+......+.+=+|+|||+. + .+...++ .|.+.++.+++...............|+|+++.
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 344555554433 334334455666789999864 2 3444444 466668877765444444445556789999988
Q ss_pred EEEeeC-----CCcEEEeeCCCCC-CCCeEecc-CCCCeEEEEEecCCCeEEEEeeCCCeEEEE--ECCC-CceeEEec-
Q 024676 117 LLTGGF-----EKILRIFDLNRPD-APPREVGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARS-GKIVQTLE- 185 (264)
Q Consensus 117 l~s~~~-----d~~i~~~d~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw--d~~~-~~~~~~~~- 185 (264)
|+..+. +-.+..|++..+. .....+.. ..+.....+|+|++..++.+...++...|| ++.. +.....+.
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 876543 2223446765431 11222222 222335678999888777666555655555 4432 22222232
Q ss_pred CCCCEEEEEEcCCCcEEEEe-C-C--CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-ecC--CCeEEEEEcC
Q 024676 186 TKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGE--DMWVHVFDFH 258 (264)
Q Consensus 186 ~~~~v~~~~~s~~~~~l~~~-~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~--d~~v~vwd~~ 258 (264)
....+....|||||+.|+.. . + ..|.+||+.+++...............+.|+ |+.|+. +.. ...++++|++
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAID-SLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCC-CCEEEEEECCCCCceEEEEECC
Confidence 23356678999999877643 2 2 3689999988765332222223345677775 665553 332 4578888987
Q ss_pred ccee
Q 024676 259 TGEQ 262 (264)
Q Consensus 259 ~g~~ 262 (264)
+++.
T Consensus 404 ~g~~ 407 (428)
T PRK01029 404 TKKT 407 (428)
T ss_pred CCCE
Confidence 7654
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=4.2e-10 Score=101.20 Aligned_cols=217 Identities=14% Similarity=0.197 Sum_probs=149.9
Q ss_pred EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCe-----EEE
Q 024676 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-----VRA 107 (264)
Q Consensus 33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----v~~ 107 (264)
+++++..-+.+..-... .+....+.. .|....+.-+.++++.+..+..+-+||...+.......+... ...
T Consensus 63 ~~v~~~~~~~v~~~~~~-~~~~~~~s~---wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~ 138 (967)
T KOG0974|consen 63 KIVTCAKSDEVYVKEAS-NQIIERFSD---WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI 138 (967)
T ss_pred eEEEEEeecceeecchh-hhhhhhccc---cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence 55666655554432222 111222332 233344455677788888899999999988877666655443 223
Q ss_pred EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE--Eec
Q 024676 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLE 185 (264)
Q Consensus 108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~ 185 (264)
+..+++.-++++|+.-+.+-+|...... +......|.+.+..+.++.+ +.+++++++|+++|+|++++++... -+.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDN-KPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccC-CcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccCccccc
Confidence 4456677788889989999999987333 33356678999999998865 4578888999999999999998765 456
Q ss_pred CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 186 ~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+...+-.+.+.|+ +.++.+.|-+.++|+... ..+..|..+ .....+...+ .....+|++.|+.+++|+..
T Consensus 217 HsaRvw~~~~~~n-~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 217 HSARVWACCFLPN-RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ccceeEEEEeccc-eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhh
Confidence 6778888999999 667778899999996533 233345432 2233444443 46788999999999999875
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.1e-11 Score=103.09 Aligned_cols=235 Identities=19% Similarity=0.238 Sum_probs=155.2
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-C------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-G------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v 85 (264)
-||...|.+++--. +.+-++++|.|++|++|++.. | .+..++..|+.+|+.+.|-.+..++++ .|+-+
T Consensus 732 ~GH~~~iRai~Aid---NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAID---NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred cCcHHHhHHHHhcc---cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 48999999876543 456679999999999998754 1 245678899999999999998887775 48999
Q ss_pred EEEeCCCCcEEEEee---cCCeEEEEEE--CCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEe----ccCCCCeEEEEEec
Q 024676 86 KLWDALTGDEKHSFE---HKHIVRACAF--SEDTHLLLTG-GFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLH 155 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~---~~~~v~~~~~--~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~~~~ 155 (264)
.+||---+..+...+ ....+..+.. +-+..+++++ +...+++++|.+..+...+.. ...++-+.+++.-+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999976665444221 1122222222 3245566665 778999999998877654432 22345678888777
Q ss_pred CCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEE-EeCCCcEEE-EECCCceeeeEEecCCCCce
Q 024676 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKF-WDANHFGLVKGYNMPCNTES 232 (264)
Q Consensus 156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~-~~~~~~i~i-wd~~~~~~~~~~~~~~~~~~ 232 (264)
.+.++.+ +-..|.|-+.|.|+|+++..+.. ......++. |..++++ +..+..+-+ |-.-.+. ..++.+..+..
T Consensus 887 ~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgi--mh~q~kpppep 962 (1034)
T KOG4190|consen 887 KGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGI--MHLQDKPPPEP 962 (1034)
T ss_pred CcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCe--eeeccCCCCcc
Confidence 6665544 45569999999999999887753 333333333 3334444 344666766 6644332 23444444444
Q ss_pred eeEcCCCCCEEEEecCCCeEEEEE
Q 024676 233 ASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
.-|-..-|..++++.....+.+|.
T Consensus 963 ahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 963 AHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhhhhccCceeEEeccCcEEEEEe
Confidence 444433466788888888888884
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=5.3e-11 Score=112.02 Aligned_cols=196 Identities=20% Similarity=0.285 Sum_probs=140.1
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
-..|.++.-+|.-| +-+||+.||.+++|.-..++.+-.++ |. +.|..+.|+..|..+..+..||.+-+|.+...
T Consensus 2208 v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred cCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 34556666666433 56799999999999877777665554 34 78888999999988888889999999998733
Q ss_pred cEEEEeecCCeEEEEEECCCCCEEEEee---CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 94 DEKHSFEHKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
....--.|........|-- ..+++++ .++.+.+||.............|.+..+++++.|..+ ++++|+.+|.|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~v 2360 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGEV 2360 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCcE
Confidence 2222223666655555543 4566553 4688999997554433333356788889999988655 67788889999
Q ss_pred EEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec
Q 024676 171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 226 (264)
++||++..+..+.++. +.....++.++..|.|+||++.....++++..
T Consensus 2361 ~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence 9999998887777764 33222344455578999999998888877764
No 255
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=2.7e-10 Score=90.18 Aligned_cols=237 Identities=18% Similarity=0.298 Sum_probs=149.7
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-----ceEEeeeCCc------------CCEEEEEECCCC--cE
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----DWIGTFEGHK------------GAVWSCCLDANA--LF 75 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-----~~~~~~~~H~------------~~V~~v~~~~~~--~~ 75 (264)
..+.|.++.|.. .|.||++|..-|-|.++.-+.. ++...|++|+ ..|..+.|-.++ ..
T Consensus 25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 445688999985 7899999998898888754332 2344566665 346777775432 23
Q ss_pred EEEecCCCeEEEEeCCCCcE-------------------------------------EE-----Ee--ecCCeEEEEEEC
Q 024676 76 SASGSADFTAKLWDALTGDE-------------------------------------KH-----SF--EHKHIVRACAFS 111 (264)
Q Consensus 76 l~s~s~D~~v~iwd~~~~~~-------------------------------------~~-----~~--~~~~~v~~~~~~ 111 (264)
+.-..-|+++|+|.+..... +. .+ .|+..++++.++
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 44445699999998754310 00 01 144457788888
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCCCe--EeccCC-----CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-----
Q 024676 112 EDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK----- 179 (264)
Q Consensus 112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~-----~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~----- 179 (264)
.+...++++ .|=.|.+|+++....... .+.+++ ..|++..|.|....++.-++..|.|++-|+|...
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 888877764 567789999865433222 223332 2245555666555555555666999999998421
Q ss_pred e-eE--Eec---------CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCC-ceeeeEEecCCCCc---------------
Q 024676 180 I-VQ--TLE---------TKSPVTSAEVSRDGRYITTADGSSVKFWDANH-FGLVKGYNMPCNTE--------------- 231 (264)
Q Consensus 180 ~-~~--~~~---------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~--------------- 231 (264)
+ +. .+. .-+.|..+.|+++|+++++-+=-+++|||.+. ..++++.++++...
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 1 10 111 12467889999999999887767999999975 46777776654321
Q ss_pred -eeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 232 -SASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 232 -~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
.+.++. +...+.+||.....-+|-
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecC-Ccccccccccccceeeec
Confidence 223333 345677777766666664
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.9e-09 Score=91.71 Aligned_cols=187 Identities=13% Similarity=0.169 Sum_probs=134.7
Q ss_pred CCCCcEEEEecCCCeEEEEeCCCCcEEEEeec----CCeEEEEEE------CCC-------------C-CEEEEeeCCCc
Q 024676 70 DANALFSASGSADFTAKLWDALTGDEKHSFEH----KHIVRACAF------SED-------------T-HLLLTGGFEKI 125 (264)
Q Consensus 70 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~v~~~~~------~~~-------------~-~~l~s~~~d~~ 125 (264)
.|-..++|....||.+|+||+..++....|.. .....+..| +|. + ..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567889999999999999998887766642 122222222 221 1 34555677899
Q ss_pred EEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC-CEEEEEEcCCCcEEE
Q 024676 126 LRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYIT 203 (264)
Q Consensus 126 i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~ 203 (264)
|-+|++..++...... +.|.+.+.++.+...-+ .+-+++.|..+-.|+...++.+..+.... .+.+++++|||+.++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999998887665555 56888898888765544 45566778999999999999888886544 488999999998887
Q ss_pred EeCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCC----CCCE-EEEecCCCeEEEEEcC
Q 024676 204 TADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK----LGNI-FIAGGEDMWVHVFDFH 258 (264)
Q Consensus 204 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~-~~~gs~d~~v~vwd~~ 258 (264)
++. +.|++||+++.+.+.+|..+..+. ++.|.-. .|.+ |.++..+..+.+|-+.
T Consensus 161 ~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 161 TAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 663 699999999999999998865543 4444332 1444 4456667778888543
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=2.5e-10 Score=107.71 Aligned_cols=184 Identities=13% Similarity=0.215 Sum_probs=138.2
Q ss_pred CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec--CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (264)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (264)
|-..|+.+.-+|...+-+||+.||.|++|....+..+..++. +..|+.+.|+.+|+.+..+-.||.+.+|.+. ..+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccc
Confidence 445667777777777778999999999999988887777753 3568889999999999999999999999985 222
Q ss_pred CeEeccCCCCeEEEEEecCCCeEEEE---eeCCCeEEEEECCC--Cc-eeEEecCCCCEEEEEEcCCCcEEEE-eCCCcE
Q 024676 138 PREVGNSSGSIRTVAWLHSDQTILSS---CTDSGGVRLWDARS--GK-IVQTLETKSPVTSAEVSRDGRYITT-ADGSSV 210 (264)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~d~~v~iwd~~~--~~-~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i 210 (264)
......|+.....+.|.. .++++ .++++-+.+||.-. .. .++ ..+...++++++.|..+++.+ +.+|.|
T Consensus 2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 333334566666666664 23333 34678899999643 22 333 445567999999999877655 568999
Q ss_pred EEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 211 KFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 211 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
.+||++..+..++|+. +. ..++|++|+..|.++||+++.
T Consensus 2361 ~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccc
Confidence 9999998887777764 22 468999999999999999864
No 258
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=2.6e-08 Score=77.53 Aligned_cols=205 Identities=12% Similarity=0.050 Sum_probs=134.1
Q ss_pred eeEeccCCC--CCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcEE
Q 024676 21 DLFYSPITP--DGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEK 96 (264)
Q Consensus 21 ~~~~~~~~~--~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~ 96 (264)
.+.|-|.+- ..-+||.|++.|...+|...+.+. .+....|...|.-+.=.-+. .-+.-++-|+++|+.++.-+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 467777552 234889999999999999987763 34444454433221111111 22345677888999887655432
Q ss_pred EEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC-e-EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676 97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-R-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (264)
Q Consensus 97 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw 173 (264)
...- ..-.++.++++++++++++.+..+.+..|.++...... . ...+....-.+..|+..+ ..++++..||++.||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEE
Confidence 2221 11237899999999999999999999999986543322 2 223334455667777654 467778899999999
Q ss_pred ECCCCc-eeEEe-----cCCCCEEEEEEcCCCc--EEEEeCC-CcEEEEECCCceeeeEEec
Q 024676 174 DARSGK-IVQTL-----ETKSPVTSAEVSRDGR--YITTADG-SSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 174 d~~~~~-~~~~~-----~~~~~v~~~~~s~~~~--~l~~~~~-~~i~iwd~~~~~~~~~~~~ 226 (264)
|+|.-. ++... .++..+..+.|+|.|. +|..++. +.+++-|+|++.-++.+-+
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 998643 22221 2456799999998774 4555554 7899999999876655544
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=6.6e-08 Score=82.61 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=137.7
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEE
Q 024676 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA 109 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~ 109 (264)
.+.+++.++.++.+.-+|..+|+.+-.++........... ++..++.++.|+.+..+|..+|+.+........+....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 3557888899999999999999865433322211111222 35566777889999999999998877765444433211
Q ss_pred ECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC----CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec
Q 024676 110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185 (264)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~ 185 (264)
.. .+..++.++.++.+..+|.++++...+....... ........ ++. +..+..++.+..+|+++|+.+....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~-v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGG-VLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCE-EEEECCCCEEEEEEccCCCEeeeec
Confidence 11 2456777788999999999888765543221100 00011111 233 3445566899999999998776543
Q ss_pred CCCC-----------E-EEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEE
Q 024676 186 TKSP-----------V-TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH 253 (264)
Q Consensus 186 ~~~~-----------v-~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~ 253 (264)
...+ + .+..+ .++..++++.++.+..||.++++.+-....... ..... .+..++.++.|+.++
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVV 292 (377)
T ss_pred cccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEE
Confidence 2111 0 01111 145566667788999999998876654443221 11111 245677778899999
Q ss_pred EEEcCcceee
Q 024676 254 VFDFHTGEQI 263 (264)
Q Consensus 254 vwd~~~g~~i 263 (264)
.+|.++|+++
T Consensus 293 ~~d~~tG~~~ 302 (377)
T TIGR03300 293 ALDRRSGSEL 302 (377)
T ss_pred EEECCCCcEE
Confidence 9999999864
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=4.7e-08 Score=83.52 Aligned_cols=224 Identities=16% Similarity=0.153 Sum_probs=135.9
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEE
Q 024676 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA 109 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~ 109 (264)
++..++.++.|+.+.-+|..+|+.+-..... +.+.+.... .+..++.++.|+.+..||..+++.+...+...+...+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4556778888999999999999865333221 222221111 23355566779999999999998777665433221110
Q ss_pred --ECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-CCCC--------e-EEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 110 --FSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGS--------I-RTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 110 --~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~--------i-~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
-+| .+..++.+..++.+..+|.++++........ ..+. + .... . .++.+++ ++.++.+..||.
T Consensus 182 ~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~-~-~~~~vy~-~~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV-V-DGGQVYA-VSYQGRVAALDL 258 (377)
T ss_pred CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE-E-ECCEEEE-EEcCCEEEEEEC
Confidence 011 1246777888899999998887655432211 0000 0 0011 1 1344444 445699999999
Q ss_pred CCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE-ecCCCC-ceeeEcCCCCCEEEEecCCCeEE
Q 024676 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY-NMPCNT-ESASLEPKLGNIFIAGGEDMWVH 253 (264)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~gs~d~~v~ 253 (264)
++|+.+....... ....... ++++++...++.+..+|..+++.+-.+ ...... .+... .+..+++++.|+.++
T Consensus 259 ~tG~~~W~~~~~~-~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 259 RSGRVLWKRDASS-YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLH 333 (377)
T ss_pred CCCcEEEeeccCC-ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEE
Confidence 9999877665322 1122222 445556667889999999988766444 222111 11111 256788899999999
Q ss_pred EEEcCcceee
Q 024676 254 VFDFHTGEQI 263 (264)
Q Consensus 254 vwd~~~g~~i 263 (264)
++|..+|+++
T Consensus 334 ~~d~~tG~~~ 343 (377)
T TIGR03300 334 WLSREDGSFV 343 (377)
T ss_pred EEECCCCCEE
Confidence 9999999875
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.7e-09 Score=91.95 Aligned_cols=145 Identities=19% Similarity=0.240 Sum_probs=123.0
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEE
Q 024676 30 DGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR 106 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~ 106 (264)
|-.+++-|..-|.|.+++...|+....+. +|-+.|.++.++.+-.++.|++.|+.+-.|+......++.+. .+..+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 45688999999999999999999888886 599999999999999999999999999999999988888775 445688
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC-----CCeEEEEeeCCCeEEEEECCC
Q 024676 107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-----DQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~d~~v~iwd~~~ 177 (264)
.++++|+++.+++++ +.|++||+++.+. .+.+.+|.+++++++|... +.+++.+...+..+.+|=.+.
T Consensus 149 sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999887 7899999998765 4566778999999998765 566777766667788886654
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.15 E-value=1.1e-09 Score=89.23 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=111.6
Q ss_pred CCCCCeEEEEEeCCCCcEEEeCCCCc----eEEeeeC--CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee
Q 024676 27 ITPDGFFLVSASKDSSPMLRNGETGD----WIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE 100 (264)
Q Consensus 27 ~~~~g~~l~t~s~d~~v~i~~~~~~~----~~~~~~~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 100 (264)
.++++++||.+..++.+.+++..... ++..+.. ....+..+..+......-..+....+.+|....+.+...+.
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG 149 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG 149 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh
Confidence 34678899888888887676654332 2222222 22334444444434444456777888888877777777778
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 024676 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180 (264)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~ 180 (264)
|-+-+..++++|++++++++..|..||+-.............+|+.-|..++..+ +. .+++++.|++|++||+++|++
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~-~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NY-LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Cc-eeeecCCCCcEEEEecccCCc
Confidence 8899999999999999999999999999877655444444556777777777654 33 366777789999999999998
Q ss_pred eEEecC
Q 024676 181 VQTLET 186 (264)
Q Consensus 181 ~~~~~~ 186 (264)
++++..
T Consensus 228 L~t~dl 233 (390)
T KOG3914|consen 228 LDTCDL 233 (390)
T ss_pred ccccch
Confidence 876643
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.2e-08 Score=84.97 Aligned_cols=115 Identities=21% Similarity=0.371 Sum_probs=86.0
Q ss_pred cCCCCeEEEEEecCCCeEEEE-eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEE-EeC---CCcEEEEECCC
Q 024676 143 NSSGSIRTVAWLHSDQTILSS-CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TAD---GSSVKFWDANH 217 (264)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~-~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~---~~~i~iwd~~~ 217 (264)
...++|.++.|++++.-+.+. |..--.+.|+|++ +.++..+.. .+-+.+.|+|.|++++ ++- .|.|.+||+.+
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e-gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE-GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-CCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 347899999999987655443 4444689999988 556665544 5778899999998864 443 37899999999
Q ss_pred ceeeeEEecCCCCceeeEcCCCCCEEEEecC------CCeEEEEEcCccee
Q 024676 218 FGLVKGYNMPCNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQ 262 (264)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~------d~~v~vwd~~~g~~ 262 (264)
++++..+... +.....|+| +|++|+|+.+ |..++||+. +|.+
T Consensus 346 ~K~i~~~~a~-~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy-tG~~ 393 (566)
T KOG2315|consen 346 RKLIAKFKAA-NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY-TGSL 393 (566)
T ss_pred hhhccccccC-CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence 9888777653 334567888 5899998876 678999997 4654
No 264
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.14 E-value=2.3e-08 Score=79.62 Aligned_cols=216 Identities=17% Similarity=0.172 Sum_probs=128.6
Q ss_pred CCCcEEEeCCCCceEEeeeC---CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE
Q 024676 40 DSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (264)
Q Consensus 40 d~~v~i~~~~~~~~~~~~~~---H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (264)
++++..+|..+|+.+-...- ..+.+ +..+ +++..++.++.++.+..||..+|+.+..+....++.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 56788888888876544321 22222 1122 245556666889999999999999888776543322111 123455
Q ss_pred EEEeeCCCcEEEeeCCCCCCCCeE-eccC-C-CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC----
Q 024676 117 LLTGGFEKILRIFDLNRPDAPPRE-VGNS-S-GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---- 189 (264)
Q Consensus 117 l~s~~~d~~i~~~d~~~~~~~~~~-~~~~-~-~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~---- 189 (264)
++.++.++.+..+|..+++..... .... . ...........+..+++. ..++.|..+|+++|+.+.......+
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG-TSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE-ETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE-eccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 666778889999998888876663 3221 1 111111111124444444 4469999999999999877654321
Q ss_pred -------EEEEEEcCCCcEEEEeCCCc-EEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 190 -------VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 190 -------v~~~~~s~~~~~l~~~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
+..-.+..++..+++..++. +.+ |+.+++.+ +..+.......... .+..++.++.++.+..||+++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WSKPISGIYSLPSV-DGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EEECSS-ECECEEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EEecCCCccCCcee-eCCEEEEEeCCCEEEEEECCCCC
Confidence 12222233455556665554 666 99999855 32221111111233 35667766699999999999999
Q ss_pred ee
Q 024676 262 QI 263 (264)
Q Consensus 262 ~i 263 (264)
++
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.1e-06 Score=71.28 Aligned_cols=239 Identities=15% Similarity=0.195 Sum_probs=151.6
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCC---CCcEE--EeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCC-CeEE
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKD---SSPML--RNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSAD-FTAK 86 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d---~~v~i--~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D-~~v~ 86 (264)
+..-..=|+|+| ++++|.++-.+ +.|.- ||.++|++. .....-..+-..++++++++++++++.. +.|.
T Consensus 38 ~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 38 ELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred ccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 444445567775 78888888666 44444 455556542 1111112232568999999998877554 7899
Q ss_pred EEeCCC-Cc---EEEEeecCCe----------EEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeE--eccCCCCeE
Q 024676 87 LWDALT-GD---EKHSFEHKHI----------VRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE--VGNSSGSIR 149 (264)
Q Consensus 87 iwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~i~ 149 (264)
++.+.. |. ......|... +....+.|++++|+++.. -..|.+|++..+...... ........+
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 998865 43 2333445444 778889999999998754 256889999866543322 123344567
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCC--c--eeEEe-------cCCCCEEEEEEcCCCcEEEEeCC--CcEEEEECC
Q 024676 150 TVAWLHSDQTILSSCTDSGGVRLWDARSG--K--IVQTL-------ETKSPVTSAEVSRDGRYITTADG--SSVKFWDAN 216 (264)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~--~--~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~--~~i~iwd~~ 216 (264)
.+.|.|+++...+.+--+++|-+|..... + +++.+ ........+.++|||+||-+++- ..|-++.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 88888888776666666789999998763 2 22222 12345778899999999987763 367777664
Q ss_pred Cc-e---eeeEEecCCC-CceeeEcCCCCCEEEEecC-CCeEEEEEc
Q 024676 217 HF-G---LVKGYNMPCN-TESASLEPKLGNIFIAGGE-DMWVHVFDF 257 (264)
Q Consensus 217 ~~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~-d~~v~vwd~ 257 (264)
.. . .+........ +..+.+.+ .+++|+++++ +..+.+|..
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence 32 2 2222222333 56677776 4777776665 456888853
No 266
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-09 Score=89.75 Aligned_cols=240 Identities=18% Similarity=0.205 Sum_probs=159.7
Q ss_pred cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--C-ceEEeeeCCcCCEEEEEECCCCcEEEEecC-CCeEEEEeC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G-DWIGTFEGHKGAVWSCCLDANALFSASGSA-DFTAKLWDA 90 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~-~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~-D~~v~iwd~ 90 (264)
|.+.|..+.-. -.+++.++|.||.++.|-..- | +.+..|..|.+.|.+++.+.++.++.|.+. |+.+|++|+
T Consensus 8 hrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 67777777543 346899999999999996532 3 467788899999999999999999999877 999999998
Q ss_pred CCCcEEEEeecCCeEEEEEE--CCCC--CEEEEe-eCCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 91 LTGDEKHSFEHKHIVRACAF--SEDT--HLLLTG-GFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~--~~~~--~~l~s~-~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
.+-....-.........+.| +|.. ..++.. -.++.+.++|-..... .....+-|..++.++.+++.+.. +++.
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSi 162 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSI 162 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-eeec
Confidence 77553332222222222223 2321 133333 3468899999765442 23344567889999998887665 4455
Q ss_pred eCCCeEEEEECCC------CceeEEec----------CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC
Q 024676 165 TDSGGVRLWDARS------GKIVQTLE----------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP 227 (264)
Q Consensus 165 ~~d~~v~iwd~~~------~~~~~~~~----------~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~ 227 (264)
...|.|.-|..+. .+....++ ..+...++.++|++..++. +.|+.|++++.++++.++.+.-.
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 5568999999873 11111222 2345788999999988765 56899999999887665443210
Q ss_pred -----C-----------------------------CCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 228 -----C-----------------------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 228 -----~-----------------------------~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
+ ....+.|.. .+.+|+.|+-=| |+|.++.+++
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCe
Confidence 0 011233333 577777777655 8888887765
No 267
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.8e-08 Score=82.37 Aligned_cols=241 Identities=17% Similarity=0.163 Sum_probs=141.6
Q ss_pred EeeccCCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEE
Q 024676 11 VCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLW 88 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iw 88 (264)
++++|...|..|+|+| ... +|..++.+..+.|.|+++...+..+..| .++++++|.-|.. ++..|-..|.|.|+
T Consensus 188 ~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cccccchhhhhhccCc---cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 4578999999999997 333 7889999999999999999888888888 8999999998764 57889999999999
Q ss_pred eCCCCc-EEEEee---cCCeEEEEEE------CCCCCEEEEeeCCCcEEEeeCCCC--CCCCeEeccCCCCeEEEEEecC
Q 024676 89 DALTGD-EKHSFE---HKHIVRACAF------SEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHS 156 (264)
Q Consensus 89 d~~~~~-~~~~~~---~~~~v~~~~~------~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~ 156 (264)
|+...+ .+..+. ..++|..++. .+.+.+|+..+.+ ...|++... ..+........+....+++.+.
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 997654 111111 1234444332 2334444444433 334654321 1122122223444555555555
Q ss_pred CCeEEEEeeCC------CeEEE-EECCCCceeEEec-C--C---C---CEEEEEEcCCCcEEEE-eC-CCcEEEEECCCc
Q 024676 157 DQTILSSCTDS------GGVRL-WDARSGKIVQTLE-T--K---S---PVTSAEVSRDGRYITT-AD-GSSVKFWDANHF 218 (264)
Q Consensus 157 ~~~~~~~~~~d------~~v~i-wd~~~~~~~~~~~-~--~---~---~v~~~~~s~~~~~l~~-~~-~~~i~iwd~~~~ 218 (264)
..+++++.-.+ +.|-. -|-+.|..+..-. . . . .-..+.-.+++++++. ++ .+.+.+||...+
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 56666653221 00111 1222232221110 0 0 0 1112233456666654 33 368999999999
Q ss_pred eeeeEEecCCCCceeeEcC-CCCCEEEEecCCCeEEEEEcC
Q 024676 219 GLVKGYNMPCNTESASLEP-KLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~gs~d~~v~vwd~~ 258 (264)
+.+.++........+.... +.+.+|++ =+|..++||..+
T Consensus 422 evvQ~l~~~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 422 EVVQTLALSEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNE 461 (463)
T ss_pred heeeecccCcceeecceeecCCcchhhh-eecceEEEEecC
Confidence 9999998875544333322 22344444 457779998754
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=7.5e-09 Score=81.36 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=108.4
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCC-CcEE
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT-GDEK 96 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~-~~~~ 96 (264)
++.|++ .+..++++-.+|.+.+-+..... .+++.++|+-+.+..+|+... ..+.||+.|+.+.-||++. ++.+
T Consensus 126 slD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 126 SLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred EEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 344553 55667888888888765544443 345789999999999998644 6789999999999999983 3222
Q ss_pred EE--eecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe-EEEEeeCCCeEEE
Q 024676 97 HS--FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDSGGVRL 172 (264)
Q Consensus 97 ~~--~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d~~v~i 172 (264)
.. -.|...|.++.-+| ...++++|++|..|++||.+....+. ......|.|+-+.+.|.... +++.|.. +..+|
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-~~~~v~GGVWRi~~~p~~~~~lL~~CMh-~G~ki 280 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-FKAKVGGGVWRIKHHPEIFHRLLAACMH-NGAKI 280 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-ccCccccceEEEEecchhhhHHHHHHHh-cCceE
Confidence 22 23677788887776 57899999999999999998543322 22234578999988876554 4556666 56788
Q ss_pred EECCCC
Q 024676 173 WDARSG 178 (264)
Q Consensus 173 wd~~~~ 178 (264)
-+.+.+
T Consensus 281 ~~~~~~ 286 (339)
T KOG0280|consen 281 LDSSDK 286 (339)
T ss_pred EEeccc
Confidence 777654
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=6.3e-09 Score=90.99 Aligned_cols=252 Identities=15% Similarity=0.197 Sum_probs=163.1
Q ss_pred eecceEeeccCC-CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCCEEEEEECCCC-cEEEEec
Q 024676 6 VAVPLVCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANA-LFSASGS 80 (264)
Q Consensus 6 ~~~~~~~~~h~~-~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s 80 (264)
+.+|..++.-+. .|..+.|+|...--.++++.+.-++ ++|++..- ..-..+.||+..|..+-|.+.. ..+++++
T Consensus 56 ~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs 134 (1081)
T KOG0309|consen 56 FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS 134 (1081)
T ss_pred CCCceeeeccCcchhcceecccCCCCceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc
Confidence 455655553232 5677999987655567777776655 47876432 2234567999999999999865 5679999
Q ss_pred CCCeEEEEeCCCCc-EEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676 81 ADFTAKLWDALTGD-EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 81 ~D~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (264)
.|..|..||+.+.. +...+. -...-..|.|+.-...+++.+-.+.+++||++.+..+...+..+...+..++++---.
T Consensus 135 vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 135 VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY 214 (1081)
T ss_pred ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh
Confidence 99999999998754 333322 2233456788876656666777888999999988877777766777777777764444
Q ss_pred eEEEEeeCCCeEEEEECCCCc--eeEEecCCCCEEEEEEcCCC--cEEEEeCC-CcE---------EEEECCC-ceeeeE
Q 024676 159 TILSSCTDSGGVRLWDARSGK--IVQTLETKSPVTSAEVSRDG--RYITTADG-SSV---------KFWDANH-FGLVKG 223 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~--~~l~~~~~-~~i---------~iwd~~~-~~~~~~ 223 (264)
..+.+++.|++|+.||.++-. ..+.+....++-.-.+.|=| ..+.-..+ ..+ ..|+..+ ...+++
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~ 294 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT 294 (1081)
T ss_pred hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee
Confidence 467778888999999987643 33344455566555555533 33322222 122 2344433 356777
Q ss_pred EecCCCCc-eeeE--------cCC-CCCEEEEecCCCeEEEEEcC
Q 024676 224 YNMPCNTE-SASL--------EPK-LGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 224 ~~~~~~~~-~~~~--------~~~-~~~~~~~gs~d~~v~vwd~~ 258 (264)
|..+.... .+.+ ..+ -.-.|+|=|.|..+|+|.+.
T Consensus 295 F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 295 FVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 76654321 1111 110 13479999999999999874
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.06 E-value=4.7e-09 Score=85.59 Aligned_cols=155 Identities=17% Similarity=0.251 Sum_probs=100.5
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--ccCCCCeEEEEEecCCCeEEE--EeeCCCeEEEEECCCCceeE
Q 024676 107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILS--SCTDSGGVRLWDARSGKIVQ 182 (264)
Q Consensus 107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~--~~~~d~~v~iwd~~~~~~~~ 182 (264)
.+..+|.+++++.+..++.+.+++.+......... ......-+.+.+...+...++ ..++...+.+|....+.+..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 34557777777777666665566654332111111 111112233334444444333 33444567777777677766
Q ss_pred EecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEec-CCCCc-eeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 183 TLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNM-PCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 183 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
.+.+-+.+..++++||++++.+++ |..||+-....-..+.+|.. +.... .++..+ ++.|++||.|+++|+||..+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence 677778899999999999988876 78999988777777888876 33333 344443 56799999999999999999
Q ss_pred ceee
Q 024676 260 GEQI 263 (264)
Q Consensus 260 g~~i 263 (264)
|+.+
T Consensus 225 gk~L 228 (390)
T KOG3914|consen 225 GKLL 228 (390)
T ss_pred CCcc
Confidence 9864
No 271
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.06 E-value=5.3e-10 Score=62.57 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=36.6
Q ss_pred CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 51 ~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
++++++|.+|+++|.+++|+|++.+++|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356789999999999999999999999999999999997
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.04 E-value=1.8e-06 Score=72.87 Aligned_cols=224 Identities=13% Similarity=0.123 Sum_probs=139.2
Q ss_pred EEEEeCC----CCcEEEeC--CCCceE--EeeeCCcCCEEEEEECCCCcEEEEecC----CCeEEEEeCCCC--c--EEE
Q 024676 34 LVSASKD----SSPMLRNG--ETGDWI--GTFEGHKGAVWSCCLDANALFSASGSA----DFTAKLWDALTG--D--EKH 97 (264)
Q Consensus 34 l~t~s~d----~~v~i~~~--~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~----D~~v~iwd~~~~--~--~~~ 97 (264)
++.|+.. +.|.++.. +++++. ..+..- ..-..+++++++.+|.+... ++.|..|++... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~-~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG-ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES-SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC-CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 56777655 556542 333222 22345788999998876654 578988887654 2 222
Q ss_pred Eee-cCCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeE---e-----c-----cCCCCeEEEEEecCCCeEEE
Q 024676 98 SFE-HKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE---V-----G-----NSSGSIRTVAWLHSDQTILS 162 (264)
Q Consensus 98 ~~~-~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~---~-----~-----~~~~~i~~~~~~~~~~~~~~ 162 (264)
... .......++++|++++|+++.. ++.+.++++......... . + .......++.+.|++..+++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 233 3445667899999999999875 799999999763221111 1 0 12245678888998888887
Q ss_pred EeeCCCeEEEEECCCCc--ee--E--EecCCCCEEEEEEcCCCcEEE-EeC-CCcEEEEECC--Cc--eeeeEEec-CC-
Q 024676 163 SCTDSGGVRLWDARSGK--IV--Q--TLETKSPVTSAEVSRDGRYIT-TAD-GSSVKFWDAN--HF--GLVKGYNM-PC- 228 (264)
Q Consensus 163 ~~~~d~~v~iwd~~~~~--~~--~--~~~~~~~v~~~~~s~~~~~l~-~~~-~~~i~iwd~~--~~--~~~~~~~~-~~- 228 (264)
+.-....|.+|++.... .. . .+.......-+.|+|+++++- ..+ ++.|.++++. ++ +.+..... +.
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 76666799999997654 21 2 234456688899999998753 333 6789998887 33 33333332 11
Q ss_pred -----CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 229 -----~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
....+.++|+...++++......|-+|+++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 233456777544455666678889999983
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.02 E-value=2.5e-08 Score=80.02 Aligned_cols=161 Identities=15% Similarity=0.295 Sum_probs=117.0
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC----CCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~----~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
+--..++.++.|.+ .-..|+.|-..|++.-+.. ++....+....|.+.|..+-|+.....+++.+.|+.+. |
T Consensus 65 ~~mP~~~~~~~y~~---e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~ 140 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVS---ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-W 140 (404)
T ss_pred hhCCCCceEeeeec---cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-E
Confidence 34456788899986 5568889988888877644 33445667778999999999998888889988886543 4
Q ss_pred eC-CCCc-----------------------------------------EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCc
Q 024676 89 DA-LTGD-----------------------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKI 125 (264)
Q Consensus 89 d~-~~~~-----------------------------------------~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~ 125 (264)
-. +.+. .+.++ .|..++.+++|.|...+|++|..|..
T Consensus 141 hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 141 HCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred EeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 21 1110 00111 26678999999999999999999999
Q ss_pred EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 178 (264)
+-+||+........+...|...+..+.+.+- -..+.++..||.|-+||....
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~~-t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQH-TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhhh-heeeeeccCCCeEEEEeccce
Confidence 9999997655555555566777777665543 335677888999999998743
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=1.8e-06 Score=72.01 Aligned_cols=212 Identities=14% Similarity=0.161 Sum_probs=126.4
Q ss_pred CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEe-c---------CCCeEEEEeCCCCcEEEEeecCC-------
Q 024676 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-S---------ADFTAKLWDALTGDEKHSFEHKH------- 103 (264)
Q Consensus 41 ~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-s---------~D~~v~iwd~~~~~~~~~~~~~~------- 103 (264)
+.+.+.|..+++.+.++..=..+-. + ++||++.++.+ + ++..|.+||..+.+....+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999999888863222222 4 89999887554 4 57899999999999888776322
Q ss_pred -eEEEEEECCCCCEEEEee-C-CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCc
Q 024676 104 -IVRACAFSEDTHLLLTGG-F-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGK 179 (264)
Q Consensus 104 -~v~~~~~~~~~~~l~s~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-~~~ 179 (264)
.....+++|++++|+... . +..+.+.|+.+++...+.. ... ....+.. + +...++-|.+ |......+. +|+
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-vp~-~~~vy~t-~-e~~~~~~~~D-g~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-VPD-CYHIFPT-A-NDTFFMHCRD-GSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe-CCC-CcEEEEe-c-CCccEEEeec-CceEEEEecCCCc
Confidence 233778999999999765 3 6889999998766443222 211 1111111 1 1222333333 444333332 222
Q ss_pred ee-EE---ecC------CCCEEEEEEcC-CCcEEEEeCCCcEEEEECCC-----ceeeeEEecC--------CCCceeeE
Q 024676 180 IV-QT---LET------KSPVTSAEVSR-DGRYITTADGSSVKFWDANH-----FGLVKGYNMP--------CNTESASL 235 (264)
Q Consensus 180 ~~-~~---~~~------~~~v~~~~~s~-~~~~l~~~~~~~i~iwd~~~-----~~~~~~~~~~--------~~~~~~~~ 235 (264)
.. .. +.. ..| .+++ +|+++-.+..+.|.+.|+.. ...+..+... .....+++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 11 11 111 122 3355 78776555458999999543 3333333221 11223778
Q ss_pred cCCCCCEEEEec---------CCCeEEEEEcCcceee
Q 024676 236 EPKLGNIFIAGG---------EDMWVHVFDFHTGEQI 263 (264)
Q Consensus 236 ~~~~~~~~~~gs---------~d~~v~vwd~~~g~~i 263 (264)
+++.+++++... ..+.|-++|+.+++.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 877667776442 2257999999998865
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=6.7e-07 Score=85.30 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=125.1
Q ss_pred eeeeEeccCCCCCeEEEEEe-CCCCcEEEeCCCCceEEeeeC--C---------------cCCEEEEEECC-CCcEEEEe
Q 024676 19 VVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEG--H---------------KGAVWSCCLDA-NALFSASG 79 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s-~d~~v~i~~~~~~~~~~~~~~--H---------------~~~V~~v~~~~-~~~~l~s~ 79 (264)
-.+|++.+ +++.|..+. ..+.|+++|..++. +.++.+ . -..-+.+++++ ++...++.
T Consensus 626 P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNA---KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeC---CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 35677775 565554444 45678888887654 333321 0 01225789998 56667888
Q ss_pred cCCCeEEEEeCCCCcEEEEee---------------cCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCCe----
Q 024676 80 SADFTAKLWDALTGDEKHSFE---------------HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPR---- 139 (264)
Q Consensus 80 s~D~~v~iwd~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~---- 139 (264)
+.++.|++||..++....... .-.....++++|+++.|+ +-+.++.|++||++++.....
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 889999999987765322110 011245789999988554 556679999999876432100
Q ss_pred --------EeccC--------CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--------------CCC
Q 024676 140 --------EVGNS--------SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------------KSP 189 (264)
Q Consensus 140 --------~~~~~--------~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------------~~~ 189 (264)
..+.. -.....+++.+++ .++++...++.|++||..++........ -..
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 00000 0123466776655 4677777789999999998875432211 124
Q ss_pred EEEEEEcCCCcEEEEe-CCCcEEEEECCCcee
Q 024676 190 VTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220 (264)
Q Consensus 190 v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~ 220 (264)
...++++++|+++++. .++.|++||+.+.+.
T Consensus 861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 6788999999876664 468999999988765
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.97 E-value=1.8e-08 Score=78.04 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=94.3
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCc-eEEeee-CCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCCcEEE-Eeec
Q 024676 30 DGFFLVSASKDSSPMLRNGETGD-WIGTFE-GHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGDEKH-SFEH 101 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~-~~~~ 101 (264)
.++-++++..|+.+-+++.+... ....+. -|.+.- +.+.-..+.++.++..- +..++|++....... ....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeecccccccccccccc
Confidence 35678999999999999876521 111111 122111 11222234444433211 123344443322111 1112
Q ss_pred CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676 102 KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 102 ~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 177 (264)
-..|.+++-+| +.++++.|+.||.+.+||.+....+......|+.+++.+-|.|.++..+.+|++||.+--||..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 23488999999 55667778889999999998876666677789999999999998888888999999999999876
No 277
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=2.7e-09 Score=85.56 Aligned_cols=161 Identities=17% Similarity=0.254 Sum_probs=114.7
Q ss_pred eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC-----cEE
Q 024676 22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-----DEK 96 (264)
Q Consensus 22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-----~~~ 96 (264)
++|+ +...|.+ ++.+.+..+-+-++++|-. +.|. -++.|.++.|...+.++..|.+.|.|-..|++.+ .+.
T Consensus 217 CawS-lni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWS-LNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhh-hccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3555 3344555 5666677788888888742 3344 5678999999988889999999999999998754 456
Q ss_pred EEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCC--CeEeccCCCCeEEEEEe----cCCCeEEEEeeCCCe
Q 024676 97 HSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWL----HSDQTILSSCTDSGG 169 (264)
Q Consensus 97 ~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~d~~ 169 (264)
..+-|...|+++..-. ++++|++.+.+++|++||++..+.. .++. ++.++..++. ++.+-+++++++|-.
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY---eGHvN~~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY---EGHVNLSAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee---ecccccccccccccccccceEEEccCeeE
Confidence 6677999999887766 7889999999999999999754431 1222 1222222222 233334555778899
Q ss_pred EEEEECCCCceeEEecCCCC
Q 024676 170 VRLWDARSGKIVQTLETKSP 189 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~~~~ 189 (264)
.|||.++.|..+.++....+
T Consensus 370 tRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred EEEEecccCceeeccCCCCc
Confidence 99999999998887765443
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4.2e-09 Score=84.51 Aligned_cols=159 Identities=23% Similarity=0.354 Sum_probs=112.0
Q ss_pred EEEEECCC--CcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC----CCCC
Q 024676 65 WSCCLDAN--ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DAPP 138 (264)
Q Consensus 65 ~~v~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~----~~~~ 138 (264)
+.++|+-+ +.+ ++.+-+..|-+-|++++.. ..+.....|.++.|...++++..|+..|.|..+|++.. ....
T Consensus 215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhhccceee-ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 34566532 333 5566678888999988854 34445667888999998999999999999999999865 2222
Q ss_pred eEeccCCCCeEEEEEec-CCCeEEEEeeCCCeEEEEECCCCce---eEEecCCC----CEEEEEEcCC-CcEEEEeCCCc
Q 024676 139 REVGNSSGSIRTVAWLH-SDQTILSSCTDSGGVRLWDARSGKI---VQTLETKS----PVTSAEVSRD-GRYITTADGSS 209 (264)
Q Consensus 139 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~~----~v~~~~~s~~-~~~l~~~~~~~ 209 (264)
..+ -|...++++.... +++.++++.. +|+|++||+|.-++ +.+++++. ++. +-+.+. |..+++++|..
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M-~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~-~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKLMASDM-TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP-AHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred EEE-EcCcchhhhhhhccccceEeeccC-cCceeEeeehhhhcccceeeeecccccccccc-cccccccceEEEccCeeE
Confidence 233 3567788887776 5666666654 59999999998777 66666542 121 223344 34456677889
Q ss_pred EEEEECCCceeeeEEecCC
Q 024676 210 VKFWDANHFGLVKGYNMPC 228 (264)
Q Consensus 210 i~iwd~~~~~~~~~~~~~~ 228 (264)
.|||.++.+..+.+.+.+.
T Consensus 370 tRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEEEecccCceeeccCCCC
Confidence 9999999998888877654
No 279
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=1.8e-07 Score=75.37 Aligned_cols=199 Identities=16% Similarity=0.204 Sum_probs=129.2
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-----------------------------------eEEee-eC
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------------------------------WIGTF-EG 59 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-----------------------------------~~~~~-~~ 59 (264)
.+.|+.|+|.+.. ++..++....|+++++|.+.... +.+.+ .+
T Consensus 84 eEKinkIrw~~~~-n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 84 EEKINKIRWLDDG-NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhceecCCC-CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 4568899999754 44566778899999999653210 01222 35
Q ss_pred CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE---EEEeec------CCeEEEEEECCCC-CEEEEeeCCCcEEEe
Q 024676 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE---KHSFEH------KHIVRACAFSEDT-HLLLTGGFEKILRIF 129 (264)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~------~~~v~~~~~~~~~-~~l~s~~~d~~i~~~ 129 (264)
|..-|.++.+..|...++|+ +|-.|.+|+++--.. +..+.. ..-|++..|||.. ..++-.+..|+|++-
T Consensus 163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 88889999999999888764 588899999764322 222221 2247788899954 556667778999999
Q ss_pred eCCCCCC-----C-CeE---------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCceeEEecCC------
Q 024676 130 DLNRPDA-----P-PRE---------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETK------ 187 (264)
Q Consensus 130 d~~~~~~-----~-~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~------ 187 (264)
|++.... . ... +..--.+|..+.|+++|.++++- .. -+|++||+. ..+++.+++.+
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-cc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 9973210 0 000 00112457778888887766643 33 699999994 34555554432
Q ss_pred -------C---CEEEEEEcCCCcEEEEeC-CCcEEEEECCCc
Q 024676 188 -------S---PVTSAEVSRDGRYITTAD-GSSVKFWDANHF 218 (264)
Q Consensus 188 -------~---~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~ 218 (264)
. .-..++|+.++.++.+|+ ....+++++..+
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 234577888888877665 678899986443
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=1.6e-05 Score=63.73 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=137.7
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEEC-CCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSF 99 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 99 (264)
++.|.+ .+|.++++--..+.|..|+..+++.. .+.... ...+++. +++.++++. .++ +.++|..+++.....
T Consensus 4 gp~~d~--~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~-~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDP--RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVAD-SGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEET--TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEE-TTC-EEEEETTTTEEEEEE
T ss_pred ceEEEC--CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEE-cCc-eEEEecCCCcEEEEe
Confidence 356664 36777778778888999999887643 222222 5566777 677666654 344 455598888644433
Q ss_pred ec------CCeEEEEEECCCCCEEEEeeCC--------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 100 EH------KHIVRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 100 ~~------~~~v~~~~~~~~~~~l~s~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
.. ....+.++++|++++.++.... +.+..++.. ++ ...........+.++|++++..++++-+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeeccc
Confidence 32 2357899999999977775543 345556654 22 2222222345678999998888888878
Q ss_pred CCCeEEEEECCCCce-------eEEecCCC-CEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC-CCCceeeE
Q 024676 166 DSGGVRLWDARSGKI-------VQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASL 235 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~-------~~~~~~~~-~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~ 235 (264)
..+.|..+|+..... ...+.... ..-.+++..+|++.++. ..+.|.++|.+ ++.+..+..+ ..+.+.+|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 778999999853221 11222222 37789999999877664 46899999987 8888888887 45666777
Q ss_pred c-CCCCCEEEEec
Q 024676 236 E-PKLGNIFIAGG 247 (264)
Q Consensus 236 ~-~~~~~~~~~gs 247 (264)
. ++.+.+++|.+
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 4 44456666643
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=4.1e-06 Score=72.31 Aligned_cols=190 Identities=13% Similarity=0.069 Sum_probs=114.5
Q ss_pred CEEEEEECCCCcE-EEEec---CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEE-eeCC--CcEEEeeCCCCC
Q 024676 63 AVWSCCLDANALF-SASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFE--KILRIFDLNRPD 135 (264)
Q Consensus 63 ~V~~v~~~~~~~~-l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d--~~i~~~d~~~~~ 135 (264)
.+..-.|+||++. ++..+ .+..|.++|+.+++..........+....|+|+++.++. .+.+ ..|.++|+.+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 6778899999974 44322 245788889988876665555555666789999976654 3333 457777876654
Q ss_pred CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-C-C----
Q 024676 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G---- 207 (264)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~---- 207 (264)
. ..+....+......|+|++..++.+....+ .|.+.|+.+++..+....... ...|||+|++++.. . .
T Consensus 269 ~--~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 L--TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred E--EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 2 333233332334579998888776654433 588889988876443222111 24899999987543 2 1
Q ss_pred ----CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEec-CCC--eEEEEEcC
Q 024676 208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDM--WVHVFDFH 258 (264)
Q Consensus 208 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~--~v~vwd~~ 258 (264)
..|.+.|+..++. +.+..........|.|+ |+.++..+ ..+ .+.+.+++
T Consensus 345 ~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSD-GGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCC-CCEEEEEEccCCcEEEEEEecC
Confidence 2577788877653 23322222334667775 66544332 222 35555654
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=5.6e-06 Score=71.52 Aligned_cols=191 Identities=15% Similarity=0.010 Sum_probs=114.4
Q ss_pred CeeeeEeccCCCCCeE-EEEEeCC---CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCC--CeEEEEeC
Q 024676 18 PVVDLFYSPITPDGFF-LVSASKD---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD--FTAKLWDA 90 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~-l~t~s~d---~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D--~~v~iwd~ 90 (264)
++..-.|+| ||+. ++..+.+ ..+.++|+.+++...-.. ..+.+....|+||++.++ +.+.+ ..+.++|+
T Consensus 189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 555667775 8874 6655554 346667888886543322 445566678999997654 44444 45666687
Q ss_pred CCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
.++.......+......-.|+|+++.++-.+. .+ .|.+.|+.+++.. .+... +.. ...|+|++..++.+....
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~-g~~-~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--QVVFH-GKN-NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--eCccC-CCc-CceECCCCCEEEEEEcCC
Confidence 77764443333322334579999987776653 33 4667777765431 22111 111 247899888877665543
Q ss_pred --------CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC--CC--cEEEEECCC
Q 024676 168 --------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANH 217 (264)
Q Consensus 168 --------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iwd~~~ 217 (264)
..|.+.|+.+++... +..........|+|||+.++... ++ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 368888998887533 32222333578999998765432 22 355666644
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.2e-07 Score=83.91 Aligned_cols=181 Identities=17% Similarity=0.249 Sum_probs=129.5
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 97 (264)
.+.|++++ +.+|+-|+.+|.+.+.+.... . .+.-.|+.. ..+|.+++|||.||+|.|--+.+.+...
T Consensus 41 ~is~~av~-----~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 41 AISCCAVH-----DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHHhh-----cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 45566665 468999999999999876533 2 333345444 5679999999999999999998888888
Q ss_pred EeecCCeEEEEEECCC-----CCEEEEeeCCCcEEEeeCCC-CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676 98 SFEHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (264)
Q Consensus 98 ~~~~~~~v~~~~~~~~-----~~~l~s~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~ 171 (264)
.+....++..++++|+ .+.+++|+.-| +-++.-+= +.........-.|+|.++.|. +.+++-+.+ -.|+
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand-~Gv~ 182 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWAND-DGVK 182 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecC-CCcE
Confidence 8888889999999997 67889998887 66665221 111112233457899999996 456777666 5699
Q ss_pred EEECCCCceeEEecCCC-------CEEEEEEcCCCcEEEEeCCCcEEEEECCC
Q 024676 172 LWDARSGKIVQTLETKS-------PVTSAEVSRDGRYITTADGSSVKFWDANH 217 (264)
Q Consensus 172 iwd~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~~~i~iwd~~~ 217 (264)
+||..+++.+-.++... -...+.|.++.+ ++.|.+.+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence 99999988776554321 134567776654 4566777898888873
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=4.3e-08 Score=85.96 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=132.1
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
-.+++||++.|..+.|+|..|| .|++++.|..+..||.++-. .+..+..-...-..|+|+...-.+...+....|++
T Consensus 107 ef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred EEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 3567999999999999998886 89999999999999998754 44444443334456889876655555666778999
Q ss_pred EeCCCCc-EEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 88 WDALTGD-EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 88 wd~~~~~-~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
||...+. ++..++ |...|+.+.|.. -...+.+++.|++++.||-.+........-..+.+++--.+.|-++.+++--
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp 264 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP 264 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence 9987764 444443 556677777655 3356788999999999998654333332223445666666666544332211
Q ss_pred e-CCCeEEEEE---------CCC-CceeEEecCCCC-EEEEEE--------cCC---CcEEEEeCCCcEEEEECCC
Q 024676 165 T-DSGGVRLWD---------ARS-GKIVQTLETKSP-VTSAEV--------SRD---GRYITTADGSSVKFWDANH 217 (264)
Q Consensus 165 ~-~d~~v~iwd---------~~~-~~~~~~~~~~~~-v~~~~~--------s~~---~~~l~~~~~~~i~iwd~~~ 217 (264)
+ .+..+.+++ ..+ .++++.+.++.. |....| ..| -++++=+.|.++++|-+..
T Consensus 265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1 112444443 222 346677765532 222222 222 2345557789999998853
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2.4e-07 Score=81.21 Aligned_cols=212 Identities=14% Similarity=0.168 Sum_probs=141.2
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
+.||.+.|.-+-|+. ..+.|-|...+|-|.+|-+-+|.+...+- ..+..|.+++|..||..++-.-.||.|.+=.
T Consensus 67 LeGH~~sV~vvTWNe---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNE---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hccCcceEEEEEecc---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 379999999999995 66788899999999999998888765543 3567889999999999998888898886644
Q ss_pred CCCCcEEEEeec-CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC---Ce-------EeccCCCCeEEEEEe----
Q 024676 90 ALTGDEKHSFEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PR-------EVGNSSGSIRTVAWL---- 154 (264)
Q Consensus 90 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~-------~~~~~~~~i~~~~~~---- 154 (264)
+... .+...+. ......+.|+++.+.++.+-..+.+.+||-...... .. .+......+..+.|+
T Consensus 144 vdGN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 144 VDGN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred eccc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 4332 2222111 112346889999998888888899999986432110 00 011112234555554
Q ss_pred ---cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCC---------CcEEEEECCCceee
Q 024676 155 ---HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADG---------SSVKFWDANHFGLV 221 (264)
Q Consensus 155 ---~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~---------~~i~iwd~~~~~~~ 221 (264)
+++...++.|.+.|.+.|-..+....-..+...-.+..+.|+++|.+++. +.+ +.|++|.. -++.+
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~ 301 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIV 301 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhhe
Confidence 35667888899889888865544332222333456788999999998764 321 23555543 34556
Q ss_pred eEEecCC
Q 024676 222 KGYNMPC 228 (264)
Q Consensus 222 ~~~~~~~ 228 (264)
.+++.+.
T Consensus 302 gtlkvpg 308 (1189)
T KOG2041|consen 302 GTLKVPG 308 (1189)
T ss_pred EEEecCC
Confidence 6666643
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.83 E-value=1.3e-06 Score=73.27 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=126.3
Q ss_pred CCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC-eEEEEeCCCCcEEEEeecCCeEEE
Q 024676 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-TAKLWDALTGDEKHSFEHKHIVRA 107 (264)
Q Consensus 29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~v~~ 107 (264)
.+|.+++..|. |.+.+.+...+-.++ -+|.+.|+-..+..+..-++-|-.|| .+-|+|..+++....-+.-..|..
T Consensus 330 ~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a 406 (668)
T COG4946 330 VNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA 406 (668)
T ss_pred CCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEE
Confidence 36888888876 455565555443321 25788899999988888888899999 999999999987777666678999
Q ss_pred EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE---eeCCCeEEEEECCCCceeEEe
Q 024676 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS---CTDSGGVRLWDARSGKIVQTL 184 (264)
Q Consensus 108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~d~~v~iwd~~~~~~~~~~ 184 (264)
+..+|+++.++.+-....+-+.|++++...... ....+-|..++|.|+..++.-+ +-..+.|+++|+.+++.....
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 999999999998888888999999887643222 2356788999999887765443 223357999999999876654
Q ss_pred cCCCCEEEEEEcCCCcEE
Q 024676 185 ETKSPVTSAEVSRDGRYI 202 (264)
Q Consensus 185 ~~~~~v~~~~~s~~~~~l 202 (264)
.....=.+-+|.|++++|
T Consensus 486 T~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred CCcccccCcccCCCCcEE
Confidence 443334455788888764
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.81 E-value=5.1e-06 Score=69.87 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=92.2
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCC-CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~-~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
+.-+|...| +|..++.++.-++.|..|| .+-|++..+++. +.+..--+.|.++..+++|++++.+.....+.+.|
T Consensus 354 iqv~~~~~V---rY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 354 IQVGKKGGV---RYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred EEcCCCCce---EEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 334677664 5555556777889999999 788999988874 45566678899999999999999998888888889
Q ss_pred CCCCcEEEE-eecCCeEEEEEECCCCCEEEEeeC----CCcEEEeeCCC
Q 024676 90 ALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGF----EKILRIFDLNR 133 (264)
Q Consensus 90 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~----d~~i~~~d~~~ 133 (264)
+.++..... -.....+....|||+++.++-+-- ...|+++|+..
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999875433 234557899999999999987643 35588888764
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.80 E-value=1.2e-05 Score=63.54 Aligned_cols=200 Identities=14% Similarity=0.201 Sum_probs=124.0
Q ss_pred CCCeEEEEEeCCCCcEEEeCCCC--ceEEeeeCCcCC---EEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee---
Q 024676 29 PDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGA---VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--- 100 (264)
Q Consensus 29 ~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~~~H~~~---V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--- 100 (264)
.+|+.|| .-.|..|.|...++. ..++...-.+++ =+.++|+||+.+||.+...|+|+++|+...+. ..++
T Consensus 7 ~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~ 84 (282)
T PF15492_consen 7 SDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAM 84 (282)
T ss_pred CCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCccc
Confidence 4888764 467888888776653 334444333332 37799999999999999999999999876432 2322
Q ss_pred -----cCCeEEEEEECCC------CCEEEEeeCCCcEEEeeCCCC----CCCCeE--e-ccCCCCeEEEEEecCCCeEEE
Q 024676 101 -----HKHIVRACAFSED------THLLLTGGFEKILRIFDLNRP----DAPPRE--V-GNSSGSIRTVAWLHSDQTILS 162 (264)
Q Consensus 101 -----~~~~v~~~~~~~~------~~~l~s~~~d~~i~~~d~~~~----~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~ 162 (264)
...+|-.+.|-+. ...|+.-..+|.++-|-+..+ ...... + ......+.++.+.|....+++
T Consensus 85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV 164 (282)
T ss_pred ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence 2234555555332 234666678888887765221 111111 1 123457888888887776666
Q ss_pred EeeCCCe----------EEEEECCCCcee--------------------EEe----------cCCCCEEEEEEcCCCcEE
Q 024676 163 SCTDSGG----------VRLWDARSGKIV--------------------QTL----------ETKSPVTSAEVSRDGRYI 202 (264)
Q Consensus 163 ~~~~d~~----------v~iwd~~~~~~~--------------------~~~----------~~~~~v~~~~~s~~~~~l 202 (264)
+|..... +.-|.+-.+.+. ..+ .....|..+..||||.+|
T Consensus 165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L 244 (282)
T PF15492_consen 165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL 244 (282)
T ss_pred eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence 6554332 445533211110 000 012348889999999998
Q ss_pred EE-eCCCcEEEEECCCceeeeEEecCCCC
Q 024676 203 TT-ADGSSVKFWDANHFGLVKGYNMPCNT 230 (264)
Q Consensus 203 ~~-~~~~~i~iwd~~~~~~~~~~~~~~~~ 230 (264)
++ ..+|.|.+|++......+.+.....+
T Consensus 245 a~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 245 ACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred EEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 77 45899999999988887777655443
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.79 E-value=1e-06 Score=70.06 Aligned_cols=186 Identities=19% Similarity=0.125 Sum_probs=111.3
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecC----Ce
Q 024676 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHK----HI 104 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~----~~ 104 (264)
++.++++++.++.+..+|..+|+.+-.+.. .+.+...... .+..++.++.|+.+..+|..+|+.+... ... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 455677889999999999999987655443 1111111112 2334444557789999999999988773 321 11
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-CC--------CeEEEEEecCCCeEEEEeeCCCe-EEEEE
Q 024676 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SG--------SIRTVAWLHSDQTILSSCTDSGG-VRLWD 174 (264)
Q Consensus 105 v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~--------~i~~~~~~~~~~~~~~~~~~d~~-v~iwd 174 (264)
.........+..++.+..++.+..+|+.+++......... .. .+..-.... ++.++++. .++. +.+ |
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~-~~g~~~~~-d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSS-GDGRVVAV-D 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEEEC-CTSSEEEE-E
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEEEc-CCCeEEEE-E
Confidence 1111222237778888889999999998887654443321 11 112222233 33555554 4464 666 9
Q ss_pred CCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceee
Q 024676 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV 221 (264)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~ 221 (264)
+++++.+.... ......+....++.+++.+.++.+..||+++++.+
T Consensus 190 ~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 190 LATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 99999765434 23333323344445555557899999999998764
No 290
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=6.4e-06 Score=70.38 Aligned_cols=194 Identities=18% Similarity=0.194 Sum_probs=124.3
Q ss_pred cCCCeeeeEeccCCCCCeEEEE-----EeCCCCcEEEeCCCCc---eE--EeeeCCcCCEEEEEECCCCc--E-EEEecC
Q 024676 15 HSRPVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGD---WI--GTFEGHKGAVWSCCLDANAL--F-SASGSA 81 (264)
Q Consensus 15 h~~~v~~~~~~~~~~~g~~l~t-----~s~d~~v~i~~~~~~~---~~--~~~~~H~~~V~~v~~~~~~~--~-l~s~s~ 81 (264)
|...|..+.++|.- .--++|+ .++-..+|||...-.. .+ ++|- ..+.| .+.|.+.+. + |++.--
T Consensus 164 ~~~~i~~f~lSpgp-~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 164 SVSGITMLSLSPGP-EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eccceeeEEecCCC-CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEee
Confidence 56678888888741 1123433 3555668888664211 11 1221 11222 356665443 2 233333
Q ss_pred C---------CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEe--eCCCcEEEeeCCCCCCCCeEeccCCCCeEE
Q 024676 82 D---------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG--GFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (264)
Q Consensus 82 D---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~ 150 (264)
| .++.+.++.+..+...+....||.++.|+|+++-++.+ -+=.++.+||++. .. ...+ .+++-++
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~-v~df--~egpRN~ 316 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KP-VFDF--PEGPRNT 316 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CE-eEeC--CCCCccc
Confidence 3 47777787754555566678899999999999777654 3456788999863 22 1222 3567778
Q ss_pred EEEecCCCeEEEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-------CCCcEEEEECC
Q 024676 151 VAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-------DGSSVKFWDAN 216 (264)
Q Consensus 151 ~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-------~~~~i~iwd~~ 216 (264)
+-|+|.+..++++|..+ |.+-|||..+.+++..++... -.-+.|+|||.++.++ -|+.++||+..
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 88888777777766644 789999999988887776643 3456899999987553 25679999974
No 291
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.77 E-value=3.2e-06 Score=68.24 Aligned_cols=236 Identities=15% Similarity=0.090 Sum_probs=146.3
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
.||.+.|++...-|..+ -+.+.|.|.++|+|-- +.++.-..+. .--.++.++.+.++...|+.|=..|++.-+-+
T Consensus 21 eG~~d~vn~~~l~~~e~---gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEE---GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred cCchhhhhhheeccCCC---CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 69999999877776543 5789999999999954 3455433332 11346788899999999999999999988865
Q ss_pred CCC----cE-EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe---EEE
Q 024676 91 LTG----DE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT---ILS 162 (264)
Q Consensus 91 ~~~----~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~ 162 (264)
..- .. .....|...|..+.++...+.+++++.|..+..--.+.+.....-.. .++..+.+. +.-
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--------~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF--------ETPASALQFDALYAF 169 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe--------eccCCCCceeeEEEE
Confidence 432 11 22235888999999999999999999998865433333322211110 000001111 111
Q ss_pred EeeCCCeEEEEECC--CCceeEEecC-CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceee--eEEecCCCCceeeEc
Q 024676 163 SCTDSGGVRLWDAR--SGKIVQTLET-KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLV--KGYNMPCNTESASLE 236 (264)
Q Consensus 163 ~~~~d~~v~iwd~~--~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~ 236 (264)
.+...+.|.+-.+. ....+..+.. ..++.++.|.|..+.+ ++..|..+-.||+.-+.-+ ..+............
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 22233444443332 3334445543 4679999999987665 4567889999999654322 111112222222222
Q ss_pred CCCCCEEEEecCCCeEEEEEcCcc
Q 024676 237 PKLGNIFIAGGEDMWVHVFDFHTG 260 (264)
Q Consensus 237 ~~~~~~~~~gs~d~~v~vwd~~~g 260 (264)
+ -...+.++++|+.|-+||++..
T Consensus 250 ~-~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 Q-HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred h-hheeeeeccCCCeEEEEeccce
Confidence 2 3567899999999999998744
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=6.1e-06 Score=70.59 Aligned_cols=231 Identities=18% Similarity=0.243 Sum_probs=134.3
Q ss_pred eeeeEeccCCCCCeEEEEEeCC-----------CCcEEEeCCCCceEEeeeC--CcCCEEE-EEECCCCcEEEEecCCCe
Q 024676 19 VVDLFYSPITPDGFFLVSASKD-----------SSPMLRNGETGDWIGTFEG--HKGAVWS-CCLDANALFSASGSADFT 84 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d-----------~~v~i~~~~~~~~~~~~~~--H~~~V~~-v~~~~~~~~l~s~s~D~~ 84 (264)
|.-+.|+| ..+||+|=|.. ..++|||+.+|...+.|.. -...++- ..||.|++++|-...| +
T Consensus 252 Vq~idfSP---~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s 327 (698)
T KOG2314|consen 252 VQFIDFSP---NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S 327 (698)
T ss_pred ceeeecCC---ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-e
Confidence 44566665 78899998652 3679999999998887764 2223333 5899999999876664 5
Q ss_pred EEEEeCCCCcE----------------------EEEe----------------ecCC--------eE--EEEEECCCCCE
Q 024676 85 AKLWDALTGDE----------------------KHSF----------------EHKH--------IV--RACAFSEDTHL 116 (264)
Q Consensus 85 v~iwd~~~~~~----------------------~~~~----------------~~~~--------~v--~~~~~~~~~~~ 116 (264)
|.|++..+... ++.+ +... .| ..+.|-.+|.+
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 78887643211 1100 0000 01 13445556666
Q ss_pred EEEeeC----------CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC--CCeEEEEECCCCc----e
Q 024676 117 LLTGGF----------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGK----I 180 (264)
Q Consensus 117 l~s~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~----~ 180 (264)
|+.--. -..+-|+.++....+ .........+...+|-|.+..+.+-.+. ..++++|-.++.. .
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIp-ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCC-ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 553211 111234444433322 2222345567888999887765443332 2468888887421 1
Q ss_pred eEEecCCCCEEEEEEcCCCcEEEEe----CCCcEEEEECCCceeeeEEec--CCCCceeeEcCCCCCEEEEecC------
Q 024676 181 VQTLETKSPVTSAEVSRDGRYITTA----DGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIFIAGGE------ 248 (264)
Q Consensus 181 ~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gs~------ 248 (264)
+..+. ....+.+.|+|.|++++.+ ..+.+.++|...-.+ +.... +......-+.| .|+|++++++
T Consensus 487 Vk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~-k~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 487 VKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL-KDTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh-hhccCccccccccceECC-CCCEEEEeeehhhhcc
Confidence 22222 2457889999999997543 357899999864221 11222 22334566777 5999999886
Q ss_pred CCeEEEEEc
Q 024676 249 DMWVHVFDF 257 (264)
Q Consensus 249 d~~v~vwd~ 257 (264)
|.--++|++
T Consensus 564 d~GYri~tf 572 (698)
T KOG2314|consen 564 DNGYRIFTF 572 (698)
T ss_pred ccceEEEEe
Confidence 444566665
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=4.9e-07 Score=79.31 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=110.9
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---------------eEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------WIGTFEGHKGAVWSCCLDANALFSASGS 80 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---------------~~~~~~~H~~~V~~v~~~~~~~~l~s~s 80 (264)
.....|++|+- ...|++.|+.||.+++-.+.+.. .-++++||++.|.-+.|....+.+.|..
T Consensus 14 nvkL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 34477899995 55699999999999997554321 1257899999999999999999999999
Q ss_pred CCCeEEEEeCCCCc---EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676 81 ADFTAKLWDALTGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (264)
Q Consensus 81 ~D~~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (264)
.+|.|.+|-+..+. ....-+.++-|.+++|+.+|..+...-.||.+-+=.++..+.-...+. ......+.|+++.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDL 168 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccH
Confidence 99999999987763 222234566789999999998888777888776655443211011111 1123457788776
Q ss_pred CeEEEEeeCCCeEEEEECCC
Q 024676 158 QTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~ 177 (264)
..++. +..+|.+.++|...
T Consensus 169 ~~~Lf-~~ange~hlydnqg 187 (1189)
T KOG2041|consen 169 EQALF-KKANGETHLYDNQG 187 (1189)
T ss_pred HHHHh-hhcCCcEEEecccc
Confidence 65444 45569999999764
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.75 E-value=1e-05 Score=76.20 Aligned_cols=233 Identities=14% Similarity=0.232 Sum_probs=145.5
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEE----eCCCC--ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE--
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLR----NGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL-- 87 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~----~~~~~--~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i-- 87 (264)
...|..+.|-+ +...|+.+..+|.|.+. +.... +.++.+. ..|.+++|+||+..++-...++++-+
T Consensus 75 ~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd---~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 75 NDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSVD---SGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEc---CcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 35677888885 67788999999999888 44443 2344444 68999999999998877766776665
Q ss_pred --EeCCC---------Cc--EE--------EEe-----------------e--------cCCeEEEEEECCCCCEEEEee
Q 024676 88 --WDALT---------GD--EK--------HSF-----------------E--------HKHIVRACAFSEDTHLLLTGG 121 (264)
Q Consensus 88 --wd~~~---------~~--~~--------~~~-----------------~--------~~~~v~~~~~~~~~~~l~s~~ 121 (264)
||.-. +. .+ ..| + ....-..++|--||++++..+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 33210 00 00 000 0 011234578999999998765
Q ss_pred C------CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee--CCCeEEEEECCCCceeEEec-----CCC
Q 024676 122 F------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGGVRLWDARSGKIVQTLE-----TKS 188 (264)
Q Consensus 122 ~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~-----~~~ 188 (264)
. -+.+|+|+-+ +... .......+--..++|-|.+..+.++.. +...|-+|. |.|-....+. ...
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~-stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQ-STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEE 305 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEE-eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCc
Confidence 4 3679999965 3322 111123444566899987754443332 123466666 3444333342 235
Q ss_pred CEEEEEEcCCCcEEEEeCCCcEEEEECCCce--eeeEEecC--CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFG--LVKGYNMP--CNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 189 ~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~ 257 (264)
.+..+.|++|+..|+..-...|++|-..+|. .=+.+.++ .......|++.....|.....++.+..+++
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred eeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 6899999999999887655569999998864 22223332 223347788877777777777666765553
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=8.7e-06 Score=65.97 Aligned_cols=183 Identities=17% Similarity=0.225 Sum_probs=121.1
Q ss_pred eeEeccCCCCCeEEEEEeCC-----CCcEEEeCC-CCceEEeeeCCcCCEEEEEECCCCcEEEEe---------------
Q 024676 21 DLFYSPITPDGFFLVSASKD-----SSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASG--------------- 79 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d-----~~v~i~~~~-~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~--------------- 79 (264)
.-.|+| ||++|.+.-.| |.|-|||.. +.+.+.+|..|.=.=+.+.+.||+..|+.+
T Consensus 55 Hg~fs~---dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL 131 (305)
T PF07433_consen 55 HGVFSP---DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL 131 (305)
T ss_pred CEEEcC---CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence 345674 99999998554 568899998 557788887765444667789999666554
Q ss_pred ---cCCCeEEEEeCCCCcEEEEee-----cCCeEEEEEECCCCCEEEEeeCCCc-------EEEeeCCCCCCCCeE----
Q 024676 80 ---SADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKI-------LRIFDLNRPDAPPRE---- 140 (264)
Q Consensus 80 ---s~D~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~-------i~~~d~~~~~~~~~~---- 140 (264)
.++-++-.-|..+|+.+.... |...++.+++++++..++..-+.+. +-+++.... .....
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~ 210 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEE 210 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChH
Confidence 122234445666676555432 4557999999999987776654433 223332211 11011
Q ss_pred -eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCc
Q 024676 141 -VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS 209 (264)
Q Consensus 141 -~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 209 (264)
.....+.+-++++..++..+++++..-+.+-+||..+++.+..... ..+..++..+++ |++++..+.
T Consensus 211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCcc
Confidence 1123578999999988888999999989999999999998765554 356677777777 655544344
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=1.8e-05 Score=68.04 Aligned_cols=225 Identities=14% Similarity=0.074 Sum_probs=130.4
Q ss_pred CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEE--
Q 024676 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC-- 108 (264)
Q Consensus 31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~-- 108 (264)
+..++.++.++.+.-+|.++|+.+=..... +.+.+--.-.++ .++.+..++.+.-+|..+|+.+..++...+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 445677888899988999999754333211 122211111134 4555677899999999999988777543221100
Q ss_pred EECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCC-----eEEEEEec--CCCeEEEEeeCCCeEEEEECCCC
Q 024676 109 AFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGS-----IRTVAWLH--SDQTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 109 ~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~-----i~~~~~~~--~~~~~~~~~~~d~~v~iwd~~~~ 178 (264)
.-+| .+..++.++.++.+..+|..+++....... ...+. ...+...| .++.++++ +.++.+..+|.++|
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~-~~~g~l~ald~~tG 276 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL-AYNGNLVALDLRSG 276 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE-EcCCeEEEEECCCC
Confidence 0122 133566677788888888887766544321 11000 00000011 13445544 45689999999999
Q ss_pred ceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec-CCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 179 KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PCN-TESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 179 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
+.+........ ...... ++++++...++.+..+|..+++.+=.... ... ..+... .+..++.++.|+.+++.|
T Consensus 277 ~~~W~~~~~~~-~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 277 QIVWKREYGSV-NDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEeecCCCc-cCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEE
Confidence 98766543322 122222 45566666778899999988765422221 111 111111 245678889999999999
Q ss_pred cCcceee
Q 024676 257 FHTGEQI 263 (264)
Q Consensus 257 ~~~g~~i 263 (264)
.++|+.+
T Consensus 352 ~~tG~~~ 358 (394)
T PRK11138 352 REDGRFV 358 (394)
T ss_pred CCCCCEE
Confidence 9999875
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.71 E-value=4.7e-08 Score=54.50 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=32.9
Q ss_pred ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEe
Q 024676 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN 47 (264)
Q Consensus 9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~ 47 (264)
...+.+|+.+|.+|+|+| ++++|++|+.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 456789999999999997 789999999999999997
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=6.9e-09 Score=92.53 Aligned_cols=201 Identities=19% Similarity=0.252 Sum_probs=136.6
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec-CCC-eE
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADF-TA 85 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s-~D~-~v 85 (264)
.+.+++-|+..-+|++|+- +.++|+.|+..|.++++++.+|.......+|..+|.-+.-+.||..+.+.+ ... ..
T Consensus 1093 ~w~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cchhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4556788999999999994 678999999999999999999998889999999999999888887765543 333 56
Q ss_pred EEEeCCC-CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc---CCCCeEEEEEecCCCeEE
Q 024676 86 KLWDALT-GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---SSGSIRTVAWLHSDQTIL 161 (264)
Q Consensus 86 ~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~ 161 (264)
-+|++.+ +....+|...+ ++.|+.....-+.|+......+||+.+.......+.. ..-+.+...|+|.+..++
T Consensus 1170 aLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDK---AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccccccc---eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7899754 44555554333 3455543333333444466789999876554332211 122335566777655433
Q ss_pred EEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE
Q 024676 162 SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (264)
Q Consensus 162 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~ 224 (264)
.|| -+||.|..+.++.+..-+.-..=.|+|+|.-++.-+ .|||+|+++.++..
T Consensus 1247 ----ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 ----NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred ----eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence 345 469999988887775433222335899987655422 47999998776544
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=6.5e-06 Score=70.44 Aligned_cols=228 Identities=20% Similarity=0.255 Sum_probs=133.0
Q ss_pred eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC-----------CeEEEEe
Q 024676 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----------FTAKLWD 89 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-----------~~v~iwd 89 (264)
-+.|+| -|.||+|-..-|. .+|-.++-..++.|. |. .|.-+.|||..++|+|=|.. ..+.|||
T Consensus 215 yv~wSP---~GTYL~t~Hk~GI-~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 215 YVRWSP---KGTYLVTFHKQGI-ALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eEEecC---CceEEEEEeccce-eeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 367775 7999999887775 689777655555554 53 57889999999999986432 6899999
Q ss_pred CCCCcEEEEeec--C-Ce-EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEec----------
Q 024676 90 ALTGDEKHSFEH--K-HI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH---------- 155 (264)
Q Consensus 90 ~~~~~~~~~~~~--~-~~-v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~---------- 155 (264)
+.+|..++.+.. . .+ -....|+.++++++--.. +.|.+|+..+-... ....-.-..|....|+|
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEcc
Confidence 999998888764 2 22 235789999998875444 56788875431110 00000001111122222
Q ss_pred -------------------------------------CCCeEEEEeeCC---------CeEEEEECCCCc-eeEEecCCC
Q 024676 156 -------------------------------------SDQTILSSCTDS---------GGVRLWDARSGK-IVQTLETKS 188 (264)
Q Consensus 156 -------------------------------------~~~~~~~~~~~d---------~~v~iwd~~~~~-~~~~~~~~~ 188 (264)
++.++.+-.... ..+.|+.++... ++...+...
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 222111100000 012222222111 122233345
Q ss_pred CEEEEEEcCCCcEEE--EeCC--CcEEEEECCC----ceeeeEEecCCCCceeeEcCCCCCEEEEe---cCCCeEEEEEc
Q 024676 189 PVTSAEVSRDGRYIT--TADG--SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAG---GEDMWVHVFDF 257 (264)
Q Consensus 189 ~v~~~~~s~~~~~l~--~~~~--~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---s~d~~v~vwd~ 257 (264)
++...+|-|.|..++ ++.. .++.+|-+++ .++++.+.. ...+...+.|. |++++.+ |..+.+..+|+
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPk-G~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPK-GRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCC-CcEEEEEEecccccceEEEec
Confidence 677888999985443 3332 4789998773 344555554 34556778885 7777654 44688999987
Q ss_pred C
Q 024676 258 H 258 (264)
Q Consensus 258 ~ 258 (264)
+
T Consensus 525 ~ 525 (698)
T KOG2314|consen 525 D 525 (698)
T ss_pred c
Confidence 6
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.4e-06 Score=71.66 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=119.2
Q ss_pred EeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCC
Q 024676 55 GTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLN 132 (264)
Q Consensus 55 ~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~ 132 (264)
+.+.+|...|+.++|+|... ++..++.+.+++|.|+++......+.....+++++|+.++ +++++|-..|.|.+||++
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 34456778899999999776 6788999999999999999888888777899999999865 667777789999999998
Q ss_pred CCCCCCeEecc--CCCCeEEEEEecCCC-----eEEEEeeCCCeEEEEECCC----CceeEEecCCCCEEEEEEcCCCcE
Q 024676 133 RPDAPPREVGN--SSGSIRTVAWLHSDQ-----TILSSCTDSGGVRLWDARS----GKIVQTLETKSPVTSAEVSRDGRY 201 (264)
Q Consensus 133 ~~~~~~~~~~~--~~~~i~~~~~~~~~~-----~~~~~~~~d~~v~iwd~~~----~~~~~~~~~~~~v~~~~~s~~~~~ 201 (264)
..+........ ...++..++..+++. .+++.... .+..|.... .-++..++..+...+.++++-.+.
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 76654433321 233555555444331 23332222 244554432 122223333334445555554343
Q ss_pred E-EEeCC--C--cEE----EEECCCceee----eEE-ecC---CCCceeeEc-CCCCCEEEEecCCCeEEEEEcCccee
Q 024676 202 I-TTADG--S--SVK----FWDANHFGLV----KGY-NMP---CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 202 l-~~~~~--~--~i~----iwd~~~~~~~----~~~-~~~---~~~~~~~~~-~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
+ ++-.. + .++ --|.+.+.++ .++ ..+ -....+.+. ++...++..|.+-+.+.+||..+++.
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 3 22211 0 111 1122333322 111 001 111122222 22344555688889999999988764
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=5.4e-06 Score=64.92 Aligned_cols=148 Identities=14% Similarity=0.036 Sum_probs=103.5
Q ss_pred EEEEeCCCCcEEEeCCCCceEEeeeCCcCC--EEEEEECCCCcEEEEecCCCeEEEEeCCCC-cEEEE-e--ecCCeEEE
Q 024676 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGA--VWSCCLDANALFSASGSADFTAKLWDALTG-DEKHS-F--EHKHIVRA 107 (264)
Q Consensus 34 l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~--V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~-~--~~~~~v~~ 107 (264)
+..++.|.++++.+++-+... +..|-.. +.++++++|++++++.++-..|-+|.+... +.+.. + ..++.-.+
T Consensus 131 ~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred eeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 456677777777766544322 2224443 788999999999999998888999987653 22211 2 23344567
Q ss_pred EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe----EeccCCCCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCcee
Q 024676 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----EVGNSSGSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIV 181 (264)
Q Consensus 108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----~~~~~~~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~ 181 (264)
..|+..+..++++..|+++.+||++....+.. ...+|+|.+..+.|++.+. .++.+-.- +.+.+.|+|+++-.
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYVNH 287 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCcee
Confidence 78999999999999999999999986544332 3356889999999986543 34444333 78999999998754
Q ss_pred EEe
Q 024676 182 QTL 184 (264)
Q Consensus 182 ~~~ 184 (264)
+.+
T Consensus 288 q~I 290 (344)
T KOG4532|consen 288 QVI 290 (344)
T ss_pred eEE
Confidence 433
No 302
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=0.00011 Score=59.89 Aligned_cols=218 Identities=12% Similarity=0.162 Sum_probs=132.7
Q ss_pred CCCcEEEeCCC--Cce-EEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCC--CcEEEEe---ecCCeEEEE
Q 024676 40 DSSPMLRNGET--GDW-IGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALT--GDEKHSF---EHKHIVRAC 108 (264)
Q Consensus 40 d~~v~i~~~~~--~~~-~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~--~~~~~~~---~~~~~v~~~ 108 (264)
++-|.+|++.+ |+. ...+-.+.+...-++|++++++|.++..+ +.|--|.+.. |.....- ...++-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45688887763 332 12233456667789999999998887555 5566665543 4322211 123445889
Q ss_pred EECCCCCEEEEeeC-CCcEEEeeCCC-CCCCCe-EeccCCCC----------eEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 109 AFSEDTHLLLTGGF-EKILRIFDLNR-PDAPPR-EVGNSSGS----------IRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 109 ~~~~~~~~l~s~~~-d~~i~~~d~~~-~~~~~~-~~~~~~~~----------i~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
++++++++++++.. -+.|.++-++. +..... +...|.+. .....+.|++..+++..-.-..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999876 48899998854 332211 22223322 5666777777776666555568999999
Q ss_pred CCCceeE----EecCCCCEEEEEEcCCCcEE--EEeCCCcEEEEECCCc----eeeeEEe-cCC------CCceeeEcCC
Q 024676 176 RSGKIVQ----TLETKSPVTSAEVSRDGRYI--TTADGSSVKFWDANHF----GLVKGYN-MPC------NTESASLEPK 238 (264)
Q Consensus 176 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l--~~~~~~~i~iwd~~~~----~~~~~~~-~~~------~~~~~~~~~~ 238 (264)
..|+... .++......-+.|+|+++++ +.--+++|-+|..... +.++.+. ++. ....+..++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~- 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP- 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence 9776432 23445567889999999875 3334789999988662 3333332 121 122344555
Q ss_pred CCCEEEEec-CCCeEEEEEcC
Q 024676 239 LGNIFIAGG-EDMWVHVFDFH 258 (264)
Q Consensus 239 ~~~~~~~gs-~d~~v~vwd~~ 258 (264)
+|++|.++- ....|-+|.++
T Consensus 254 dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEc
Confidence 477665532 12356666543
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=5.8e-06 Score=73.38 Aligned_cols=234 Identities=13% Similarity=0.041 Sum_probs=152.7
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC------------CcEEEEecCCCeEE
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN------------ALFSASGSADFTAK 86 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~------------~~~l~s~s~D~~v~ 86 (264)
-.++.|+| .| ++|-|+.. .|.+.|..+.+.++.++-|...|..+.|.|- ..++|++...|.|.
T Consensus 18 ~~A~Dw~~---~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSP---SG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCc---cc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 55788885 45 45666554 5678899999999999999999999999762 23567888889999
Q ss_pred EEeCCCCcEEEEee-cCCeEEEEEECC---CC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEE
Q 024676 87 LWDALTGDEKHSFE-HKHIVRACAFSE---DT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (264)
Q Consensus 87 iwd~~~~~~~~~~~-~~~~v~~~~~~~---~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (264)
+||...+..+..++ +.+++..++|-| ++ ..|++-..-.++-+|+..+|+..+.....+ ....++.+-|-+...+
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceE
Confidence 99998887766665 556888888866 33 456666667899999998887655443322 2445555555443333
Q ss_pred EEeeCCCeEEEEECCC-------CceeEEecCC-C-----------------C--------EEEEEEcCCCcE-EEEeCC
Q 024676 162 SSCTDSGGVRLWDARS-------GKIVQTLETK-S-----------------P--------VTSAEVSRDGRY-ITTADG 207 (264)
Q Consensus 162 ~~~~~d~~v~iwd~~~-------~~~~~~~~~~-~-----------------~--------v~~~~~s~~~~~-l~~~~~ 207 (264)
+..+..|.+.+-+.-. ++.++....+ . + ...++|+|--+. +...-.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 3333447777765421 2322222111 0 0 112345666543 333446
Q ss_pred CcEEEEECCCceeeeEEecCCCC---ceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 208 SSVKFWDANHFGLVKGYNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
+.+.++|++-..++....++.+. ......++ .+.+.+..+||.+-+|..+.
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~-rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR-RDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCC-cceEEEEecCCeEEEEEeec
Confidence 78999999988888777765442 22223332 57889999999999997543
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.65 E-value=6e-05 Score=64.03 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=91.5
Q ss_pred EEEECCCCCEEEEee-----------CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE-EEEeeCCCeEEEEE
Q 024676 107 ACAFSEDTHLLLTGG-----------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI-LSSCTDSGGVRLWD 174 (264)
Q Consensus 107 ~~~~~~~~~~l~s~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~d~~v~iwd 174 (264)
.+.|++.+++|+.-- ....+.++++...... .. ....++|..++|.|.+..+ +++|.....+.++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-ee-ccccccceeeeecccCCceeEEecccccceeecc
Confidence 466788777766321 1234566666532221 12 1457899999998766554 44556778999999
Q ss_pred CCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCC---CcEEEEECCCcee-eeEEecCCCCceeeEcCCCCCEEEEec--
Q 024676 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADG---SSVKFWDANHFGL-VKGYNMPCNTESASLEPKLGNIFIAGG-- 247 (264)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~---~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gs-- 247 (264)
++.. . ...-....-+.+.|+|.+++++. +-| +.+.+||...... +..+... +.....|.| +++++-+.-
T Consensus 305 lr~N-l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wsp-d~qF~~~~~ts 380 (561)
T COG5354 305 LRGN-L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSP-DGQFYDTDTTS 380 (561)
T ss_pred cccc-e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccC-CceEEEecCCC
Confidence 9977 3 33333345667889999998755 333 6799999876544 4355432 222334555 466655542
Q ss_pred ----CCCeEEEEEcC
Q 024676 248 ----EDMWVHVFDFH 258 (264)
Q Consensus 248 ----~d~~v~vwd~~ 258 (264)
.|..+.|||+.
T Consensus 381 ~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 381 EKLRVDNSIKLWDVY 395 (561)
T ss_pred cccccCcceEEEEec
Confidence 38889999974
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.63 E-value=1.7e-05 Score=68.27 Aligned_cols=223 Identities=12% Similarity=0.023 Sum_probs=131.7
Q ss_pred CeEEEEEeCCCCcEEEeCCCCceE--EeeeCCcC--------CEE-EEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676 31 GFFLVSASKDSSPMLRNGETGDWI--GTFEGHKG--------AVW-SCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (264)
Q Consensus 31 g~~l~t~s~d~~v~i~~~~~~~~~--~~~~~H~~--------~V~-~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 99 (264)
+..+.+++.++.+.-+|..+|+.+ ..+....+ .+. .+.. ++..++.++.++.+.-+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 446777888888888899888754 33332110 000 0111 2445566778999999999999887776
Q ss_pred ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-C---eEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-S---IRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~---i~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
+....+..-..- .+..++.+..++.+..+|.++++........... . ...-... ++.+++ +..++.+..+|.
T Consensus 147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~-~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIV-GGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEE-EcCCCEEEEEEc
Confidence 644433221011 2446667778889999999888766554321100 0 0000111 233444 445689999999
Q ss_pred CCCceeEEecCCCC--------EEEEEEcC---CCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEE
Q 024676 176 RSGKIVQTLETKSP--------VTSAEVSR---DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI 244 (264)
Q Consensus 176 ~~~~~~~~~~~~~~--------v~~~~~s~---~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (264)
++|+.+...+...+ ...+..+| ++.+++++.++.+.-+|..+++.+=........ .... .+..+.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~---~~~~vy 298 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN-DFAV---DGGRIY 298 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc-CcEE---ECCEEE
Confidence 99987765432111 11111222 556666667788999999988765333332111 1111 245566
Q ss_pred EecCCCeEEEEEcCcceee
Q 024676 245 AGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 245 ~gs~d~~v~vwd~~~g~~i 263 (264)
.++.|+.++..|.++|+++
T Consensus 299 ~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EEcCCCeEEEEECCCCcEE
Confidence 7778999999999999764
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=1.1e-05 Score=69.69 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=86.5
Q ss_pred eecceEeeccCCCeeeeEeccCCCCCeEEEE----EeCCCCcEE----EeCCCCceE--Ee-eeCCcCCEEEEEECCCCc
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVS----ASKDSSPML----RNGETGDWI--GT-FEGHKGAVWSCCLDANAL 74 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t----~s~d~~v~i----~~~~~~~~~--~~-~~~H~~~V~~v~~~~~~~ 74 (264)
++..-..+..-.|+ ++.|+-..| +.+.| .|.+|.+.+ |+...++.. .. --.....|.+++++|+..
T Consensus 196 lEvL~yirTE~dPl-~~~Fs~~~~--~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~ 272 (545)
T PF11768_consen 196 LEVLSYIRTENDPL-DVEFSLNQP--YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED 272 (545)
T ss_pred EEEEEEEEecCCcE-EEEccCCCC--cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc
Confidence 34444444444554 677774333 23333 244565543 555544322 11 124677899999999999
Q ss_pred EEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC
Q 024676 75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135 (264)
Q Consensus 75 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~ 135 (264)
.++.|+.||+|.+||...+..... ...-..+.++|||++.++++|+..|.+.+||+.-..
T Consensus 273 kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred eEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999999999999999877644333 344557889999999999999999999999986443
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.53 E-value=0.0003 Score=57.22 Aligned_cols=221 Identities=18% Similarity=0.191 Sum_probs=124.6
Q ss_pred eEeccCCCCCeEEEEEeCCCC-cEEEeCCCCceEEeeeCCcCCEEE--EEECCCCcEEEEe-----cCCCeEEEEeCC-C
Q 024676 22 LFYSPITPDGFFLVSASKDSS-PMLRNGETGDWIGTFEGHKGAVWS--CCLDANALFSASG-----SADFTAKLWDAL-T 92 (264)
Q Consensus 22 ~~~~~~~~~g~~l~t~s~d~~-v~i~~~~~~~~~~~~~~H~~~V~~--v~~~~~~~~l~s~-----s~D~~v~iwd~~-~ 92 (264)
++.+|. .+..++-+-.-|+ ..++|..+++..+.+....+.-+. -.|++||.+|++. ...|.|-|||.. +
T Consensus 10 ~a~~p~--~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 10 VAAHPT--RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred eeeCCC--CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 444552 4456777777775 456888888776555332222211 4689999998775 445899999998 3
Q ss_pred CcEEEEee-cCCeEEEEEECCCCCEEEEee------------------CCCcEEEeeCCCCCCCCe-Ee--ccCCCCeEE
Q 024676 93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGG------------------FEKILRIFDLNRPDAPPR-EV--GNSSGSIRT 150 (264)
Q Consensus 93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~------------------~d~~i~~~d~~~~~~~~~-~~--~~~~~~i~~ 150 (264)
...+..+. +.-.-.-+.+.|+++.|+.+- ++..+-..|..+++...+ .+ ..++-++..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 34444553 111234466888887776541 111222334444443322 12 124446777
Q ss_pred EEEecCCCeEEEEeeCCCe-------EEEEECCCCceeEEec--------CCCCEEEEEEcCCCcEEEEeC--CCcEEEE
Q 024676 151 VAWLHSDQTILSSCTDSGG-------VRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITTAD--GSSVKFW 213 (264)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~-------v~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~--~~~i~iw 213 (264)
+++.+++ .++......+. |-+++ .++.+..+. ....+-++++++++.+++.++ ++.+.+|
T Consensus 168 La~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 168 LAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred EEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 7766543 33333333222 22222 222222221 235789999999998876554 6799999
Q ss_pred ECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC
Q 024676 214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (264)
Q Consensus 214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~ 250 (264)
|..+++.+.....+..+... .. .+.++++.+...
T Consensus 245 d~~tg~~~~~~~l~D~cGva-~~--~~~f~~ssG~G~ 278 (305)
T PF07433_consen 245 DAATGRLLGSVPLPDACGVA-PT--DDGFLVSSGQGQ 278 (305)
T ss_pred ECCCCCEeeccccCceeeee-ec--CCceEEeCCCcc
Confidence 99999988777664332222 22 233666666543
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.6e-06 Score=70.26 Aligned_cols=215 Identities=13% Similarity=0.117 Sum_probs=139.7
Q ss_pred ecceEeeccCCCeeeeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC----cEEEEecC
Q 024676 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA----LFSASGSA 81 (264)
Q Consensus 7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~----~~l~s~s~ 81 (264)
+..+.++.|...|..++-+ -+|..+.|.+. |+.++++|++.-.++.-++.---+=.+-.+...| ...++.-.
T Consensus 44 EfVKhFraHL~~I~sl~~S---~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVS---YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFK 120 (558)
T ss_pred eehhhhHHHHHHHHhhhcc---ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeeccc
Confidence 3444456677777766555 47888888777 9999999998765442222110010111122233 34456677
Q ss_pred CCeEEEEeCCCCc-EEE--EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC----CC--C----Ce----EeccC
Q 024676 82 DFTAKLWDALTGD-EKH--SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DA--P----PR----EVGNS 144 (264)
Q Consensus 82 D~~v~iwd~~~~~-~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~----~~--~----~~----~~~~~ 144 (264)
++.+-++|-.... +.. .--|..+|..+.+.|.+..+++....|+|.-|..+.. +. . .. .....
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~ 200 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA 200 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence 7899999965543 222 2238899999999999999998888899999987631 10 0 00 01122
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC----------------------------------CCE
Q 024676 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------------------------------SPV 190 (264)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----------------------------------~~v 190 (264)
+....++.++|.+.. +++-..|..|++++.++|+.++.+... .+-
T Consensus 201 Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~ 279 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVG 279 (558)
T ss_pred ccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccc
Confidence 345677888876654 555568899999999998866544210 123
Q ss_pred EEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676 191 TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN 225 (264)
Q Consensus 191 ~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 225 (264)
..+.|...|+||.-+.==.|++.++.++++++.+.
T Consensus 280 ~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 280 TNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred ceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence 45667777888877765578999999988887774
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=9.4e-05 Score=66.61 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=127.5
Q ss_pred CCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCC-EEEEEECCCCcEEEEecCCC-----eEEEEeCCCC------cEE
Q 024676 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADF-----TAKLWDALTG------DEK 96 (264)
Q Consensus 29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~-V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~~------~~~ 96 (264)
+.+-.+|.|+++|.|.+.+-. -+.++.|..|... |..+-...+..+|++-+-|+ .++||+++.. .+.
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~ 111 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL 111 (933)
T ss_pred CCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence 356688999999998776532 3445677777666 54444445556777765554 6999997543 122
Q ss_pred ---EEee-----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC---CCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 97 ---HSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN---RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 97 ---~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
+.+. .+.|+..++++.+-+.++.|-.+|.|..+.-+ ............+.+|+.+.+..++...+-++.
T Consensus 112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 112 YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 2222 24568889999999999989899999887532 111122233345678999999877776333333
Q ss_pred CCCeEEEEECCCCceeEE-ec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec
Q 024676 166 DSGGVRLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 226 (264)
. ..|.+|.+....+... +. +..+.+|..+++...-+.++.+.-+.+||.....+.-+|..
T Consensus 192 t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 192 T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred c-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecC
Confidence 3 5799999984442322 33 34568888888665434555566899999887666666653
No 310
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.45 E-value=0.00013 Score=68.99 Aligned_cols=227 Identities=14% Similarity=0.156 Sum_probs=136.8
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeC---C---CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC---CCeEE
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASK---D---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAK 86 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~---d---~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~---D~~v~ 86 (264)
...-..|.|. .||.|+|+.+. . +.+|||+-+ |++..+.+.-.+--.+++|.|.|.++|+..+ ...|.
T Consensus 209 dd~~~~ISWR---GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 209 DDGRVRISWR---GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred CCCceEEEEC---CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 3344578898 59999998875 2 467889866 6654444433333356899999999988754 45777
Q ss_pred EEeCCCCcEEEEe--e---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC--CeEeccCCCCeEEEEEecCCCe
Q 024676 87 LWDALTGDEKHSF--E---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 87 iwd~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
+|+-+. ..-..| + ....|..+.|++++.+|+....|. |.+|-......- +.........+..+.|.|....
T Consensus 285 FfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 285 FFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred EEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 887443 222222 1 345789999999999999866555 999987654321 1222222233344677776555
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCcee-----eeEEecCCCCcee
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGL-----VKGYNMPCNTESA 233 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~~~~ 233 (264)
.+.....++.+..+++.- ..... -..+|+.. .++.-++..+++-.++.... ...+..+..+...
T Consensus 363 ~L~v~t~~g~~~~~~~~~-----~v~~s-----~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAW-----DVSRS-----PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred EEEEEecCCcEEEEEEEE-----EEEec-----CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 444444435555544320 01000 00112222 34445566788777765432 2445566777777
Q ss_pred eEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 234 SLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
++.+. +..+++-..|+.+.+|....
T Consensus 433 af~~~-~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 433 AFSPS-NSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEeCC-CCeEEEEECCCCEEEEEecC
Confidence 88775 55588888899999998543
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00014 Score=64.36 Aligned_cols=226 Identities=15% Similarity=0.133 Sum_probs=125.5
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEeee--CCc---CCEEE-EEECCCCcEEEEec---------CCCeEEEEeCCCCcEE
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTFE--GHK---GAVWS-CCLDANALFSASGS---------ADFTAKLWDALTGDEK 96 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~---~~V~~-v~~~~~~~~l~s~s---------~D~~v~iwd~~~~~~~ 96 (264)
..++.++.++.+.-.|.++|+.+=.+. .+. ..+.+ ..+. ++. ++.++ .++.+.-.|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccccCCCCcEEEEEECCCCcee
Confidence 577788889999999999998654333 221 00111 1111 233 33333 3678888999999887
Q ss_pred EEeecCCe---------------------E-EEEEECCCCCEEEEeeCCC------------------cEEEeeCCCCCC
Q 024676 97 HSFEHKHI---------------------V-RACAFSEDTHLLLTGGFEK------------------ILRIFDLNRPDA 136 (264)
Q Consensus 97 ~~~~~~~~---------------------v-~~~~~~~~~~~l~s~~~d~------------------~i~~~d~~~~~~ 136 (264)
..++...+ + ....+++.+.+++.++.++ .+.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 77653210 0 1223445566777776554 577888888877
Q ss_pred CCeEeccCCC-----C--eEEEE-Ee-cCCC--eEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-
Q 024676 137 PPREVGNSSG-----S--IRTVA-WL-HSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT- 204 (264)
Q Consensus 137 ~~~~~~~~~~-----~--i~~~~-~~-~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~- 204 (264)
.......... . ...+. .. -++. .++..++.+|.+...|.++|+.+...+.. ...+..+| +..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC-ceEEEcc
Confidence 6654321110 0 00110 00 0111 24555566799999999999988765432 11122333 222221
Q ss_pred -----------------eCCCcEEEEECCCceeeeEEecC---------CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 205 -----------------ADGSSVKFWDANHFGLVKGYNMP---------CNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 205 -----------------~~~~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
..++.+.-.|+.+++.+=.+... .......... .+..++.++.|+.++.+|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECC
Confidence 11345666677766654333322 1110011111 35678888899999999999
Q ss_pred cceee
Q 024676 259 TGEQI 263 (264)
Q Consensus 259 ~g~~i 263 (264)
+|+++
T Consensus 425 tG~~l 429 (488)
T cd00216 425 TGKEL 429 (488)
T ss_pred CCcee
Confidence 99976
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.44 E-value=0.0003 Score=56.39 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=106.9
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee----C-CcCCEEEEEECCCCcEEEEecCC--------CeE
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE----G-HKGAVWSCCLDANALFSASGSAD--------FTA 85 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~----~-H~~~V~~v~~~~~~~~l~s~s~D--------~~v 85 (264)
...+.+.. ++|.++++ ...+ +.++|..+++....+. . .....+.+++.++|.+.+|.... +.+
T Consensus 42 ~~G~~~~~--~~g~l~v~-~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDR--PDGRLYVA-DSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEEC--TTSEEEEE-ETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEc--cCCEEEEE-EcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 44566662 36666554 4444 4555988886543322 2 34566889999999877775544 345
Q ss_pred EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCC---eEe---ccCCCCeEEEEEecCCC
Q 024676 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPP---REV---GNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~ 158 (264)
..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..+++....... ... ....+..-.+++-. ++
T Consensus 118 ~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G 195 (246)
T PF08450_consen 118 YRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DG 195 (246)
T ss_dssp EEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS
T ss_pred EEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CC
Confidence 556655 44444444455678999999998776 45677889989886433211 111 11112355677655 45
Q ss_pred eEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEc-CCC
Q 024676 159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS-RDG 199 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s-~~~ 199 (264)
.+.++....+.|.++|.+ |+.+..+... ..+++++|. |+.
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDG 237 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence 566666667999999988 8877766544 468889994 554
No 313
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00054 Score=54.69 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=117.4
Q ss_pred eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCC-cCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H-~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
+.|-.+.+.+|.|+| .++.+++.....+.+...+. +|+.++.+.-. -+..-.|++..++.++++--+++.+.+.++
T Consensus 17 l~g~~~e~SGLTy~p--d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 17 LPGILDELSGLTYNP--DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -TT--S-EEEEEEET--TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CCCccCCccccEEcC--CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 356666799999997 23456666666666655665 57777765432 356788999999999888878999999887
Q ss_pred CCC--c-EE---EEee------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC--CCCCCeE--------eccCCCCe
Q 024676 91 LTG--D-EK---HSFE------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPRE--------VGNSSGSI 148 (264)
Q Consensus 91 ~~~--~-~~---~~~~------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~--------~~~~~~~i 148 (264)
... . .. ..+. ++..+-.++|+|.++.|+.+-.....++|.++. ....... .......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 332 1 11 1221 345689999999888888887777777887653 1111110 01123456
Q ss_pred EEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC----------CCEEEEEEcCCCcEEEEeCCCcEEE
Q 024676 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSSVKF 212 (264)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~~~i~i 212 (264)
..+++.|..+++++-+.....|-.+| .+|+.+..+... ...-.+++.++|++.++++.+....
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 78888888888888778888999999 667776655432 2477899999999888887654443
No 314
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.40 E-value=7.2e-05 Score=63.55 Aligned_cols=194 Identities=15% Similarity=0.092 Sum_probs=118.8
Q ss_pred CeeeeEeccCCCCCeEEEE-----EeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec-----------C
Q 024676 18 PVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-----------A 81 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t-----~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s-----------~ 81 (264)
.|..-.|+|.. ++..||. ...+..+++|.+..++.+.+-.--+..=..+.|.+.+.+++.-- .
T Consensus 175 gi~dFsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 175 GILDFSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred ceeeEEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 45555566532 2223322 35677788888877665433211112223466777776654211 1
Q ss_pred CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEee--CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676 82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 82 D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
...+.|.++............++|...+|.|.++.+++.+ .+..+.++|++.. ..... ..+.-+.+.|+|...+
T Consensus 254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~-Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYF-PEQKRNTIFFSPHERY 329 (561)
T ss_pred cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEec-CCcccccccccCcccE
Confidence 1356677766443333334578999999999888777654 6788889998753 22222 3344455667887877
Q ss_pred EEEEeeCC--CeEEEEECCCCceeE-EecCCCCEEEEEEcCCCcEEEEe-------CCCcEEEEECCC
Q 024676 160 ILSSCTDS--GGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYITTA-------DGSSVKFWDANH 217 (264)
Q Consensus 160 ~~~~~~~d--~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~-------~~~~i~iwd~~~ 217 (264)
++..+.+. |.+-+||......+. .+... ...-+.|+||+.|+-.. .|..|+|||+..
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 77766543 679999988665443 45442 34557899999987543 256799999854
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=8.5e-06 Score=73.52 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=102.3
Q ss_pred CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec---------CCCeEEEEeCCCCcEEEEeec
Q 024676 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---------ADFTAKLWDALTGDEKHSFEH 101 (264)
Q Consensus 31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~ 101 (264)
+++|.+|...|+|.+-|.++.+.+.+|..|++.|.. |+-.|..|+|++ .|..|++||++..+.+.-+..
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~ 264 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF 264 (1118)
T ss_pred CcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc
Confidence 678999999999999999999999999999999965 555577777764 467899999987665555543
Q ss_pred CCeEEEEEECCC-CCEEEEeeCCCcEEEee---CCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 102 KHIVRACAFSED-THLLLTGGFEKILRIFD---LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 102 ~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
...-..+.|+|. ...++.++..|...+-| +..+.............+..+++++.++. ++-+..+|.|.+|--
T Consensus 265 ~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 265 PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDA-LAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCce-EEEecccCcEeeecC
Confidence 333456777884 45677778888888887 33332222233333344888888876664 555666799999973
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=0.00024 Score=63.04 Aligned_cols=185 Identities=16% Similarity=0.017 Sum_probs=105.8
Q ss_pred cCCCCCeEEEEE-eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC----eEEEEeCCCCcEEEEee
Q 024676 26 PITPDGFFLVSA-SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF----TAKLWDALTGDEKHSFE 100 (264)
Q Consensus 26 ~~~~~g~~l~t~-s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~----~v~iwd~~~~~~~~~~~ 100 (264)
|+.+||+.|... -..+.+.+.|.++.+...++.-- +.-..++++++++++.+.+.+. ++-.-+.........+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 455566554322 22334555677766655444311 1224567888888876655321 22222211111111111
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC----CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR----PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
-.. .-.+.+++++... .++.+.+.|..+ +......+ ......+.+..+|++.++++++.-+.+|.|.|++
T Consensus 278 i~~---iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 278 IAR---IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred hHH---HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 000 0133456776665 357899999876 22222233 3445668889999999999998888999999999
Q ss_pred CCce------------eEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCC
Q 024676 177 SGKI------------VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANH 217 (264)
Q Consensus 177 ~~~~------------~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~ 217 (264)
+.+. +.+.+..-...-.+|.++|...++- -|..|-.||+.+
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8663 2333322233346788888766554 377899999875
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.36 E-value=0.00026 Score=56.13 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=102.4
Q ss_pred CCee-eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-------CcCCEEEEEECCC------CcEEEEecCC
Q 024676 17 RPVV-DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-------HKGAVWSCCLDAN------ALFSASGSAD 82 (264)
Q Consensus 17 ~~v~-~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-------H~~~V~~v~~~~~------~~~l~s~s~D 82 (264)
.|=+ .++|+| |+..||.+...|+|+++|+.... +..+.. -..+|-.+.|-.- ..-|..-..+
T Consensus 43 ~PQWRkl~WSp---D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~ 118 (282)
T PF15492_consen 43 NPQWRKLAWSP---DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR 118 (282)
T ss_pred CchheEEEECC---CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc
Confidence 3434 488985 99999999999999999987533 333322 1345666666432 1134445566
Q ss_pred CeEEEEeCCCC-----cEEEEee----cCCeEEEEEECCCCCEEEEeeCC----C-------cEEEeeCCCCCCC-----
Q 024676 83 FTAKLWDALTG-----DEKHSFE----HKHIVRACAFSEDTHLLLTGGFE----K-------ILRIFDLNRPDAP----- 137 (264)
Q Consensus 83 ~~v~iwd~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d----~-------~i~~~d~~~~~~~----- 137 (264)
|.++=+-+..+ ....++. ....|.++.|+|..++|+.|+.. + -+..|-+-.+..-
T Consensus 119 G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 119 GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 66666654221 2333333 35679999999999998877531 1 1334433111100
Q ss_pred ------------------C-----eEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC
Q 024676 138 ------------------P-----REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187 (264)
Q Consensus 138 ------------------~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~ 187 (264)
. .........+..+..+|++. ++++..-+|.|.+|++.+.+++..+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccchh
Confidence 0 00112345678888887655 6666777799999999998888777654
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=3.8e-07 Score=81.77 Aligned_cols=192 Identities=18% Similarity=0.214 Sum_probs=128.1
Q ss_pred EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeC-CC-cEEEeeC
Q 024676 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF-EK-ILRIFDL 131 (264)
Q Consensus 55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~-d~-~i~~~d~ 131 (264)
+.|..|...-.+++|+.+..+++.|+..|.|+++++.+|.....+ .|..+|+.+.-+.++..+++.+. .. -.-+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 467778888899999999999999999999999999998755544 58999999988888888776543 33 3567887
Q ss_pred CCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-c----CCCCEEEEEEcCCCcEEEEeC
Q 024676 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E----TKSPVTSAEVSRDGRYITTAD 206 (264)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~----~~~~v~~~~~s~~~~~l~~~~ 206 (264)
.+.......+ .+-.++.|+.....-++++-. ....|||.+|+.++.++ . .+..-+.+.|+|+..++.-
T Consensus 1175 ~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHSF----DEDKAVKFSNSLQFRALGTEA-DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred ccccCccccc----cccceeehhhhHHHHHhcccc-cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 5421111111 122344555433333333333 46999999999877653 2 1233477889999887653
Q ss_pred CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676 207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (264)
Q Consensus 207 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~ 261 (264)
|| .+||.|.-+.++.|.--.......|+|. |..++.-++ |||+.|-+
T Consensus 1248 dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~-g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPS-GNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhhheecccccccCC-CceEEeech-----hhhhHHHH
Confidence 33 5799998777777643223334567774 666666654 57766543
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.35 E-value=9.7e-05 Score=65.46 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=116.5
Q ss_pred ECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcE--EEeeCCCCCCCCeEeccCC
Q 024676 69 LDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL--RIFDLNRPDAPPREVGNSS 145 (264)
Q Consensus 69 ~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i--~~~d~~~~~~~~~~~~~~~ 145 (264)
+++|++.+ .+.-..+.+-+.|..+.+....+........+.++|+++++++++.+... .+-.+...+..........
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 45677654 33444567777888877776666655556778899999999988743211 1111111111100000000
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECCC-----CceeEEecCCCCEEEEEEcCCCcEEEEeC--CCcEEEEECCCc
Q 024676 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-----GKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHF 218 (264)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~ 218 (264)
. +. .+.+++....+ .+++|.+.|.++ .+.+..+........+.++|||+++..+. +.++.+.|+.+.
T Consensus 280 ~-ie--a~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 280 R-IE--EAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred H-HH--HhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 0 00 12234444443 247899999998 45666666666778899999999876654 679999999886
Q ss_pred ee------------eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 219 GL------------VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 219 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
+. +......-.+.-..|.++ |..+.+--.|..|-.||+.+
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 52 444455555666677765 67888888999999999865
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.34 E-value=1.1e-05 Score=64.62 Aligned_cols=195 Identities=15% Similarity=0.261 Sum_probs=117.9
Q ss_pred cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-EEE----Ee-------------ecCCeEEEEEECCC--CCEEEEe
Q 024676 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKH----SF-------------EHKHIVRACAFSED--THLLLTG 120 (264)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~----~~-------------~~~~~v~~~~~~~~--~~~l~s~ 120 (264)
.+.|.+|.|...|.+++||...|.|.++.-.... +.. .+ +-...|+.+.|-.. ...++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578899999999999999988999999754322 111 11 12334677777543 3445667
Q ss_pred eCCCcEEEeeCCCCCCC--------------------------CeEe----------------ccCCCCeEEEEEecCCC
Q 024676 121 GFEKILRIFDLNRPDAP--------------------------PREV----------------GNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 121 ~~d~~i~~~d~~~~~~~--------------------------~~~~----------------~~~~~~i~~~~~~~~~~ 158 (264)
+.|++|++|.+...... ..+. ..|.-.+.++.++.+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 79999999987532100 0000 11223366777776666
Q ss_pred eEEEEeeCCCeEEEEECCCCce---eEEecCC------CCEEEEEEcCCC--cEEEEeCCCcEEEEECCCceee----eE
Q 024676 159 TILSSCTDSGGVRLWDARSGKI---VQTLETK------SPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLV----KG 223 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~------~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~----~~ 223 (264)
.++. ++|=.|.+|.++.-.. +..++.+ ..|++..|+|.. .+.-+++.|.|++-|+|..... +.
T Consensus 186 t~lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eeee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 5553 3567899999875432 1222222 347899999975 3344566789999999843221 11
Q ss_pred EecC-------------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 224 YNMP-------------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 224 ~~~~-------------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
+... .....+-|.+ .|+++++-+. -+|.+||+.-
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEeccc
Confidence 1110 0111223444 5888888876 5799999863
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.34 E-value=4.5e-06 Score=65.01 Aligned_cols=232 Identities=16% Similarity=0.174 Sum_probs=129.0
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce------------EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------IGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~------------~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~ 86 (264)
|..+.+. +...|+++-.++.+.......+.+ ...+.-|.++-..-+-+-.+..++++..|+.+-
T Consensus 39 ~~~~~~v----~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~ 114 (319)
T KOG4714|consen 39 LSKVSLS----AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLA 114 (319)
T ss_pred EEEeech----hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEE
Confidence 4455554 345677887777776654433211 223333444333333333466789999999999
Q ss_pred EEeCCCCcE-EEEee--cCCeEEEEEECCCCCEEEEeeC-----CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676 87 LWDALTGDE-KHSFE--HKHIVRACAFSEDTHLLLTGGF-----EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 87 iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~s~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (264)
+.+...-.. ....+ |.. ....++-..++.+.++.- -+..+.|+++-.......... ...+.+++--|...
T Consensus 115 v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq 192 (319)
T KOG4714|consen 115 VFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQ 192 (319)
T ss_pred EEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccc
Confidence 998755211 11111 111 111222233444444321 122445554321111111111 22367777667777
Q ss_pred eEEEEeeCCCeEEEEECCCCcee-EEe-cCCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCcee--------------
Q 024676 159 TILSSCTDSGGVRLWDARSGKIV-QTL-ETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGL-------------- 220 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~-------------- 220 (264)
++++.+++||.+-+||.|..... ..+ .++.++..+-|+|.. +++++++||.+.-||..+...
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLs 272 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLS 272 (319)
T ss_pred cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccccccccc
Confidence 88999999999999999987422 222 245778899999864 678889999999999874211
Q ss_pred ---eeE-Eec----CCCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 221 ---VKG-YNM----PCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 221 ---~~~-~~~----~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
++. +.+ +....++.-+.-.|..|++|+.-+.|++++
T Consensus 273 gD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 273 GDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111 111 111112211222477899999999999986
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.32 E-value=0.00068 Score=63.48 Aligned_cols=196 Identities=11% Similarity=0.168 Sum_probs=122.9
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE----eCCC
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW----DALT 92 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw----d~~~ 92 (264)
..|.++.|.. +.+.++.+..+|.|.+-|.++..+. ....-...|.+++|+||+..++-...++++.+= +.-.
T Consensus 69 ~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLA---DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEec---ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 5777888874 7778889999999999988877531 122235689999999999988766667766552 2211
Q ss_pred CcEE-------------------EEee-------------cCC---------eEEEEEECCCCCEEEEe----eCC-CcE
Q 024676 93 GDEK-------------------HSFE-------------HKH---------IVRACAFSEDTHLLLTG----GFE-KIL 126 (264)
Q Consensus 93 ~~~~-------------------~~~~-------------~~~---------~v~~~~~~~~~~~l~s~----~~d-~~i 126 (264)
...+ ..+. +.+ .=..++|--+|+++++. -.+ +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1111 0010 111 11247888899888873 234 899
Q ss_pred EEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe--eCCCeEEEEECCCCceeEEe----cC-CCCEEEEEEcCCC
Q 024676 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDARSGKIVQTL----ET-KSPVTSAEVSRDG 199 (264)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~d~~v~iwd~~~~~~~~~~----~~-~~~v~~~~~s~~~ 199 (264)
++||.+ +... ...-+..+.-.+++|-|.+..+.+.. .+|+.|.+|.-. |-....+ .. ..++..++|+.++
T Consensus 225 rV~drE-g~Ln-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 225 RVYDRE-GALN-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred EEeccc-chhh-cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCC
Confidence 999976 3322 22222344456788998665544322 244578888744 3222222 22 2348899999999
Q ss_pred cEEEE---e-CCCcEEEEECCCce
Q 024676 200 RYITT---A-DGSSVKFWDANHFG 219 (264)
Q Consensus 200 ~~l~~---~-~~~~i~iwd~~~~~ 219 (264)
..|+. . ....|++|-+.++.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CceeeeecccccceEEEEEecCeE
Confidence 88765 2 23459999998864
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.30 E-value=5.5e-05 Score=68.51 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=120.5
Q ss_pred CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEE
Q 024676 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA 109 (264)
Q Consensus 31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 109 (264)
+..++-|+.-..+..+|.++.+..+...--...|.-++ .+++++.+|...|+|-+-|..+.+.+.++. |...+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 34556666666666778887766555432222344333 457888999999999999999999888885 6666654
Q ss_pred ECCCCCEEEEeeC---------CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC---
Q 024676 110 FSEDTHLLLTGGF---------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--- 177 (264)
Q Consensus 110 ~~~~~~~l~s~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--- 177 (264)
|+-+|++|++|+. |..+++||++.-+...-. .-+.++ ..+.+.|.-...++.++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 5677999999874 566899999865432211 112222 23445565555666677779999988432
Q ss_pred Cc-eeEEec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECC
Q 024676 178 GK-IVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDAN 216 (264)
Q Consensus 178 ~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~ 216 (264)
-. .+.-+. ..+.+....+|+++..++.++ ++.|.+|.-+
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 21 122222 334589999999999998876 6899999743
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.26 E-value=0.0012 Score=54.53 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=135.6
Q ss_pred CCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeC---CcCCE----EEEEECCCCcEEEEe--cCCCeEEEE
Q 024676 28 TPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEG---HKGAV----WSCCLDANALFSASG--SADFTAKLW 88 (264)
Q Consensus 28 ~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~---H~~~V----~~v~~~~~~~~l~s~--s~D~~v~iw 88 (264)
+|||+.+.+++ ..--|.+||..+.+...++.- |+..+ +..+++.|++++... +--.+|-+-
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 35888777653 234578899999887776532 23322 335777888776532 334578888
Q ss_pred eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE----eccCCCCeE-EEEEecCCCeEEEE
Q 024676 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIR-TVAWLHSDQTILSS 163 (264)
Q Consensus 89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~----~~~~~~~i~-~~~~~~~~~~~~~~ 163 (264)
|+..++.+..+.........-+.+. -+.+-|.||.+-...++......+. +.....++. .-++...+..++-.
T Consensus 124 Dl~~~kvv~ei~~PGC~~iyP~~~~--~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~ 201 (342)
T PF06433_consen 124 DLAAKKVVGEIDTPGCWLIYPSGNR--GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV 201 (342)
T ss_dssp ETTTTEEEEEEEGTSEEEEEEEETT--EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE
T ss_pred ECCCCceeeeecCCCEEEEEecCCC--ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE
Confidence 8888888877776666555444443 4677788999888887633221111 111122222 22233333333333
Q ss_pred eeCCCeEEEEECCCCcee--EEecCC-----------CCEEEEEEcCCC-cEEE-Ee--C-----C--CcEEEEECCCce
Q 024676 164 CTDSGGVRLWDARSGKIV--QTLETK-----------SPVTSAEVSRDG-RYIT-TA--D-----G--SSVKFWDANHFG 219 (264)
Q Consensus 164 ~~~d~~v~iwd~~~~~~~--~~~~~~-----------~~v~~~~~s~~~-~~l~-~~--~-----~--~~i~iwd~~~~~ 219 (264)
+..|.|+--|+...... ..++.- ....-+++++.. ++++ -- . + ..|.++|+.+.+
T Consensus 202 -Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 202 -SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp -BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred -ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 35588888888766532 233210 123456777644 4433 21 1 1 248888999999
Q ss_pred eeeEEecCCCCceeeEcCCCCCEEE-EecCCCeEEEEEcCcceee
Q 024676 220 LVKGYNMPCNTESASLEPKLGNIFI-AGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~gs~d~~v~vwd~~~g~~i 263 (264)
.+..+.......++..+.+..-+|. ....++.+.+||..+|+.+
T Consensus 281 rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 281 RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 9999987666667777665554554 4567899999999999876
No 325
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=8.1e-05 Score=66.40 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=127.8
Q ss_pred eccCCCeeeeEeccCC-------C--CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC---CC-cEEEEe
Q 024676 13 HGHSRPVVDLFYSPIT-------P--DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NA-LFSASG 79 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~-------~--~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~---~~-~~l~s~ 79 (264)
.-|...|+.|+|.|.. | ..-.||++...|.|.+||...+..+-.|+.|.++|..++|-+ +. ..++.-
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 4688999999999832 1 133567777788999999999988888888999999999854 34 455665
Q ss_pred cCCCeEEEEeCCCCcEEEEeecCC-eEEEEEECC-CCCEEEEeeCCCcEEEeeC-CCCCC--CC--eEe-ccCCC-----
Q 024676 80 SADFTAKLWDALTGDEKHSFEHKH-IVRACAFSE-DTHLLLTGGFEKILRIFDL-NRPDA--PP--REV-GNSSG----- 146 (264)
Q Consensus 80 s~D~~v~iwd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~l~s~~~d~~i~~~d~-~~~~~--~~--~~~-~~~~~----- 146 (264)
....++-+|+..+|+....+.-.+ +..+..++| +.+.+..-+..|.+.+-+. ...+. +. .++ ..|..
T Consensus 132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 667799999999999877766444 345577888 4444444445555554442 11110 00 111 11110
Q ss_pred -----------C---------eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCc--EEE
Q 024676 147 -----------S---------IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR--YIT 203 (264)
Q Consensus 147 -----------~---------i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~--~l~ 203 (264)
. ....+|+|.-.+++.... .+.+.|+|++=..++..... .+.+..+.+-|+++ .+.
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 0 011233443344433333 37899999998888776643 33455677777763 344
Q ss_pred E-eCCCcEEEEECC
Q 024676 204 T-ADGSSVKFWDAN 216 (264)
Q Consensus 204 ~-~~~~~i~iwd~~ 216 (264)
+ ..+|.+.||--+
T Consensus 291 clH~nG~ltirvrk 304 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRK 304 (1062)
T ss_pred EEecCCeEEEEEee
Confidence 4 568888888654
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=5.3e-05 Score=66.76 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=122.3
Q ss_pred CCCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE--EEEe-----e
Q 024676 29 PDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSF-----E 100 (264)
Q Consensus 29 ~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~-----~ 100 (264)
..+.+++.|+.-|.+.+|+-..+.. +.+.++-.+.+..+.++++..++|.|++.|.|-++-+..+.+ ...+ .
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~ 122 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS 122 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence 4678999999999999999888764 345556556677788899999999999999999987765321 1111 2
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC---CCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 177 (264)
|+..|++++|++++..+++|...|++..-.++.. -...+.+....++|..++++ +..++++.. -.-.+++.+.
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl--~r~~Lc~tE~ 198 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL--TRCILCQTEA 198 (726)
T ss_pred CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh--hhhheeecch
Confidence 5678999999999999999999999988877651 11222333345566666654 334444432 2345566654
Q ss_pred Cce--eEEecCCCC-EEEEEEcCC-----CcEEEEeCCCcEEEEECC-CceeeeEEec
Q 024676 178 GKI--VQTLETKSP-VTSAEVSRD-----GRYITTADGSSVKFWDAN-HFGLVKGYNM 226 (264)
Q Consensus 178 ~~~--~~~~~~~~~-v~~~~~s~~-----~~~l~~~~~~~i~iwd~~-~~~~~~~~~~ 226 (264)
++. +..-.-.++ -..++|-|. .-+|.++. -..|+|... .++.++++++
T Consensus 199 eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG~RlWead~~G~V~~Thqf 255 (726)
T KOG3621|consen 199 ETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PGLRLWEADFAGEVIKTHQF 255 (726)
T ss_pred hHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-CCCceEEeecceeEEEeeeh
Confidence 432 111111221 122333332 23555654 246778764 4566666654
No 327
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.18 E-value=0.0023 Score=52.12 Aligned_cols=218 Identities=16% Similarity=0.127 Sum_probs=125.5
Q ss_pred CCeEEEEEeCCCCcEEEeCC-CCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE-----------
Q 024676 30 DGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH----------- 97 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~-~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----------- 97 (264)
.++.|+.|..+| +.+++.. .....+.. +...|..+...++-..++.-+ |+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 577899999988 7888873 23333333 223488998888766655544 5999999986543222
Q ss_pred ----EeecCCeEEEEE--ECCCCCEEEEeeCCCcEEEeeCCCCC----CCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 98 ----SFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 98 ----~~~~~~~v~~~~--~~~~~~~l~s~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
.+.....+...+ -.+.+...+.+...+.+.+|...... ....++ .....+..++|.+ ..++ .+..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~~--~~i~-v~~~- 156 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFLG--NKIC-VGTS- 156 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEeC--CEEE-EEeC-
Confidence 222333455544 23344445555666789988876532 122333 2346778888883 3344 4444
Q ss_pred CeEEEEECCCCceeEEecC-------------CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee--EEecCCCCce
Q 024676 168 GGVRLWDARSGKIVQTLET-------------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYNMPCNTES 232 (264)
Q Consensus 168 ~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~ 232 (264)
+...+.|+.++........ ..++..+.. +++.+|.+-++ .-.+.|. .++..+ .+.....+..
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~-~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNK-NGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcC-CCCcCcccEEEcCCchhE
Confidence 5688999998765433321 123333333 34566665432 2233343 444433 4444556666
Q ss_pred eeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
+.+.. .++++-+. +.|-||++.+|+.+
T Consensus 234 ~~~~~---pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 234 VAYSS---PYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred EEEEC---CEEEEECC-CEEEEEECcCCcEE
Confidence 66643 35666655 45999999999764
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=0.00026 Score=61.43 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=74.3
Q ss_pred EEEEECCC-CcEEE----EecCCCeEE----EEeCCCCcE----EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676 65 WSCCLDAN-ALFSA----SGSADFTAK----LWDALTGDE----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (264)
Q Consensus 65 ~~v~~~~~-~~~l~----s~s~D~~v~----iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 131 (264)
.++.|+.. ...+. +.+.+|.+. +|++..++. ...++.+..|.+++++|+...++.|+.||.+.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 45667642 22232 335555433 466654432 234467888999999999999999999999999998
Q ss_pred CCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 178 (264)
..+... .....-....++|.|++ .++++|++.|.+.+||..-.
T Consensus 289 ~~~~t~---~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TRGVTL---LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCCeee---eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 755322 11233456778898755 56667777799999998644
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.12 E-value=6.1e-07 Score=77.81 Aligned_cols=161 Identities=15% Similarity=0.184 Sum_probs=111.6
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEe----CCCCcEEEeCCCC--ce--EEeeeC-CcCCEEEEEECCCCcEEEEecCCC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSAS----KDSSPMLRNGETG--DW--IGTFEG-HKGAVWSCCLDANALFSASGSADF 83 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s----~d~~v~i~~~~~~--~~--~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~ 83 (264)
.+|.++-++++|+++ |-++||+|- .|..+.|||..++ .+ ...|.+ ......+++|.-+.+++.+|..-+
T Consensus 99 p~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 99 PGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 468888899999985 677888873 3556899999876 22 122333 445566899998888899999999
Q ss_pred eEEEEeCCCCcEEEEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEee-CCCCCCCCeEeccCC----CCeEEEEEecCC
Q 024676 84 TAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSS----GSIRTVAWLHSD 157 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d-~~~~~~~~~~~~~~~----~~i~~~~~~~~~ 157 (264)
.++++|++........-.++.+..+.++| ...++++- .|+.|-+|| .+.-+.+...+...+ ..+..++|+|--
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 99999987543322222455778888899 67777654 499999999 333232222222222 247889999876
Q ss_pred CeEEEEeeCC-CeEEEEECC
Q 024676 158 QTILSSCTDS-GGVRLWDAR 176 (264)
Q Consensus 158 ~~~~~~~~~d-~~v~iwd~~ 176 (264)
..++++++.| ++|+++|++
T Consensus 256 tglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cchhhhhccCcceEEEeccc
Confidence 6677777754 689999985
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=8.4e-07 Score=76.97 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=120.0
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEeeeCCcCCEEEEEECC-CCcEEEEe----cCCCeEEEEeC
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDA-NALFSASG----SADFTAKLWDA 90 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~-~~~~l~s~----s~D~~v~iwd~ 90 (264)
-+.|+++.-. -+...++.|.++|.|-+-+...... -....+|.-+..+++|.+ |...||.| -.|..++|||+
T Consensus 58 y~kcva~~y~-~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYG-NDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcC-CchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3455555432 2356789999999998876543321 123345666788899986 44566655 33568999999
Q ss_pred CCC--cEEEEee----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 91 LTG--DEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 91 ~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
.++ .++.... .......++|-.+.+++++|...+.+.++|++-.-.....+ .+..+..+...|-...++++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 887 3333322 22345688899999999999999999999987221111111 122233333344233456655
Q ss_pred eCCCeEEEEE-CCCCc-eeEEecCC-----CCEEEEEEcCC--CcEEEEeC-CCcEEEEECC
Q 024676 165 TDSGGVRLWD-ARSGK-IVQTLETK-----SPVTSAEVSRD--GRYITTAD-GSSVKFWDAN 216 (264)
Q Consensus 165 ~~d~~v~iwd-~~~~~-~~~~~~~~-----~~v~~~~~s~~--~~~l~~~~-~~~i~iwd~~ 216 (264)
. |+.|-+|| .++-+ .+.++... ..+..++|+|- |.+++... .++|+++|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 4 69999999 54433 23322221 23788999985 44544444 5799999985
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.07 E-value=1.6e-05 Score=42.83 Aligned_cols=38 Identities=39% Similarity=0.635 Sum_probs=34.0
Q ss_pred ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 52 ~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
+.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.0013 Score=56.80 Aligned_cols=171 Identities=16% Similarity=0.146 Sum_probs=99.1
Q ss_pred CceEEeeeCCcCCEEEEEECCCCcEEEEe---cCC-CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEe-eCCCc
Q 024676 51 GDWIGTFEGHKGAVWSCCLDANALFSASG---SAD-FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKI 125 (264)
Q Consensus 51 ~~~~~~~~~H~~~V~~v~~~~~~~~l~s~---s~D-~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~ 125 (264)
|...+.+..-...+..-+|++++..++-. ... ..+.++++.++..............-.|+|+++.|+-+ ..|+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 33333343333455666788888765432 222 46888999888755555444444456799999877755 44555
Q ss_pred --EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceeE-EecCCCCEEEEEEcCCCc
Q 024676 126 --LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQ-TLETKSPVTSAEVSRDGR 200 (264)
Q Consensus 126 --i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~--v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~ 200 (264)
|.+.|+..... ..+....+....-.|+|++..++.+.+..|. |.+.|.+.....+ +....... .-.++|||+
T Consensus 262 ~~iy~~dl~~~~~--~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~ 338 (425)
T COG0823 262 PDIYLMDLDGKNL--PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGD 338 (425)
T ss_pred ccEEEEcCCCCcc--eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCC
Confidence 45556655442 2232233333355788999988777766665 5555666665433 22222222 667999999
Q ss_pred EEEEeC--CCc--EEEEECCCceeeeEE
Q 024676 201 YITTAD--GSS--VKFWDANHFGLVKGY 224 (264)
Q Consensus 201 ~l~~~~--~~~--i~iwd~~~~~~~~~~ 224 (264)
+++... ++. |.+.|+.+...++..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 876543 344 556666554433333
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0011 Score=59.65 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=103.1
Q ss_pred CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV 141 (264)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 141 (264)
+.+.+++++ +.+++-|..+|.|.+.+..... ...+.|... +.+|.+++||+.||++.+..+.+.+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~- 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY- 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-
Confidence 445555555 5678889999999999975543 444444333 668999999999999999887665543222
Q ss_pred ccCCCCeEEEEEecC----CCeEEEEeeCCCeEEEEECCC---CceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEE
Q 024676 142 GNSSGSIRTVAWLHS----DQTILSSCTDSGGVRLWDARS---GKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214 (264)
Q Consensus 142 ~~~~~~i~~~~~~~~----~~~~~~~~~~d~~v~iwd~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd 214 (264)
....++.++++.|+ ....+++|+..| +-++.-+= ...+..-...++|.++.|. |.+++=++|-.|++||
T Consensus 110 -df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd 185 (846)
T KOG2066|consen 110 -DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYD 185 (846)
T ss_pred -ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEe
Confidence 34557788887765 123455555556 66654321 1112122455789999994 5688888888999999
Q ss_pred CCCceeeeEEecCC
Q 024676 215 ANHFGLVKGYNMPC 228 (264)
Q Consensus 215 ~~~~~~~~~~~~~~ 228 (264)
..+...+...+.+.
T Consensus 186 ~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPS 199 (846)
T ss_pred ccccceeeccCCCC
Confidence 99888776666543
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.95 E-value=0.0013 Score=45.08 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=64.8
Q ss_pred eeeeEeccCCCCC-eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676 19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (264)
Q Consensus 19 v~~~~~~~~~~~g-~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 97 (264)
|.+|.+.+...|| +.|+.||.|..||+|.-+ +.+.++.-+ +.|.+++-... ..++.+-.+|+|.+|+-.. .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 6677777766665 689999999999999754 455566544 45666666555 4567888999999998522 223
Q ss_pred EeecCCeEEEEE-ECCCC---CEEEEeeCCCcE
Q 024676 98 SFEHKHIVRACA-FSEDT---HLLLTGGFEKIL 126 (264)
Q Consensus 98 ~~~~~~~v~~~~-~~~~~---~~l~s~~~d~~i 126 (264)
..+.++.+.+++ ++.++ +-|++|-.+|.+
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 333333344443 44432 245566555554
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0013 Score=56.91 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=104.1
Q ss_pred CeeeeEeccCCCCCeEEEEEe---CC-CCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEE--
Q 024676 18 PVVDLFYSPITPDGFFLVSAS---KD-SSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLW-- 88 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s---~d-~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iw-- 88 (264)
.+..-+|+| +++.++--+ .. ..+.++++.+++ .+..+.++.. .-+|+||++++ .+..+|+...||
T Consensus 194 ~~~~p~ws~---~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 194 LILTPAWSP---DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ceeccccCc---CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEE
Confidence 333445554 555543332 22 246778888875 3455666643 34699999775 577888877776
Q ss_pred eCCCCcEEEEeecCCeE-EEEEECCCCCEEEEeeC-CCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 89 DALTGDEKHSFEHKHIV-RACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 89 d~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
|+.++.. ..+.+...+ ..=.|+|+|+.++-.+. .|. |.+++++.... .++....+.-..-.|+|++..++...
T Consensus 268 dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 268 DLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred cCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 6655552 223332222 23468999998887654 344 55556654433 33322223333556788888776665
Q ss_pred eCCCe--EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe
Q 024676 165 TDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA 205 (264)
Q Consensus 165 ~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 205 (264)
..+|. |-+.|+.++...+.+........-.+.||++.+...
T Consensus 345 ~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 345 SSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred ccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 44455 666777766644545444344456788888876554
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0034 Score=57.03 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=108.3
Q ss_pred EECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCe-EEEEEECCCCCEEEEeeCCC-----cEEEeeCCCCCCCC--
Q 024676 68 CLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHI-VRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAPP-- 138 (264)
Q Consensus 68 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~s~~~d~-----~i~~~d~~~~~~~~-- 138 (264)
++++.+..+|-|+.||.|-+.+-.- ..++.+. +... |..+.......+|++.+.|. .+++|+++..+...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 5678888889999999877766322 1113322 2333 55554444446777776654 48999987542111
Q ss_pred --e---Eecc-----CCCCeEEEEEecCCCeEEEEeeCCCeEEEEE--C-C--CCceeEEecCCCCEEEEEEcCCCcE-E
Q 024676 139 --R---EVGN-----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--A-R--SGKIVQTLETKSPVTSAEVSRDGRY-I 202 (264)
Q Consensus 139 --~---~~~~-----~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd--~-~--~~~~~~~~~~~~~v~~~~~s~~~~~-l 202 (264)
. .... ...+..+++.+.+ -..++.|..+|.|..+- + | .-+.........||+.+++-.+++. +
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 1 1111 2345666666654 44566778889998873 2 1 1122334456789999999888865 3
Q ss_pred EEeCCCcEEEEECCCcee-eeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676 203 TTADGSSVKFWDANHFGL-VKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (264)
Q Consensus 203 ~~~~~~~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~ 258 (264)
..+....|.+|.+....+ ...... +....+.++.+..+ .|++++. ..+.+|+.+
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~~-e~l~fY~sd 243 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAGS-EFLYFYDSD 243 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEecC-ceEEEEcCC
Confidence 334456899999985542 232332 23334445554323 3555553 458888865
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.83 E-value=0.011 Score=52.53 Aligned_cols=226 Identities=15% Similarity=0.163 Sum_probs=122.1
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEeeeCCcC------CE--EEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKG------AV--WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH 103 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~------~V--~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 103 (264)
..+..++.++.+.-.|..+|+.+=.+..... .+ ..+.+. ++..++.++.|+.|.-+|..+|+.+..+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 3566778889988899999875433322111 11 111111 22566677889999999999999887765433
Q ss_pred eE---EEEEECC--CCCEEEEee---------CCCcEEEeeCCCCCCCCeEeccCC-------------------CCeE-
Q 024676 104 IV---RACAFSE--DTHLLLTGG---------FEKILRIFDLNRPDAPPREVGNSS-------------------GSIR- 149 (264)
Q Consensus 104 ~v---~~~~~~~--~~~~l~s~~---------~d~~i~~~d~~~~~~~~~~~~~~~-------------------~~i~- 149 (264)
.+ ..+.-+| .+.+++.++ .++.+..+|..+++.......... ..++
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 21 0011111 124455543 356788888888876655432111 0111
Q ss_pred EEEEecCCCeEEEEeeCCC------------------eEEEEECCCCceeEEecCCCC-E------EEEEEc----CCCc
Q 024676 150 TVAWLHSDQTILSSCTDSG------------------GVRLWDARSGKIVQTLETKSP-V------TSAEVS----RDGR 200 (264)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~------------------~v~iwd~~~~~~~~~~~~~~~-v------~~~~~s----~~~~ 200 (264)
..+..+.++.+++.. .++ .|.-+|.++|+.+..++.... . ....+. -++.
T Consensus 221 ~pa~d~~~g~V~vg~-~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 221 SPTYDPKTNLVYVGT-GNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CeeEeCCCCEEEEEC-CCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 112222344444443 233 799999999999877643210 0 000111 1332
Q ss_pred ---E-EEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-----------------ecCCCeEEEEEcCc
Q 024676 201 ---Y-ITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-----------------GGEDMWVHVFDFHT 259 (264)
Q Consensus 201 ---~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------gs~d~~v~vwd~~~ 259 (264)
. +++..++.+.-.|.++++.+=.+...... ....+ +..++. ...++.+.-.|+++
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~--~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP--MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeeccc--cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 3 33445788999999999876555432111 11111 222221 12357788888888
Q ss_pred ceee
Q 024676 260 GEQI 263 (264)
Q Consensus 260 g~~i 263 (264)
|+.+
T Consensus 376 G~~~ 379 (488)
T cd00216 376 GKVV 379 (488)
T ss_pred CcEe
Confidence 8764
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.82 E-value=0.0071 Score=57.02 Aligned_cols=197 Identities=16% Similarity=0.121 Sum_probs=120.8
Q ss_pred CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee----CCC----
Q 024676 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD----LNR---- 133 (264)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d----~~~---- 133 (264)
+.|.++.|..+..-++-+..+|.|.+-|..+......-.....|.+.+|+|+.++++-.+.++++-+-. .=.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 578889998887777777778889888887765444444567899999999999988887777665321 100
Q ss_pred -------CCCC-------CeEeccCC---------------------CCeEEEEEecCCCeEEEE----eeCCCeEEEEE
Q 024676 134 -------PDAP-------PREVGNSS---------------------GSIRTVAWLHSDQTILSS----CTDSGGVRLWD 174 (264)
Q Consensus 134 -------~~~~-------~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~----~~~d~~v~iwd 174 (264)
++.. -.++.... ..-..+.|--+++++.++ ..+-+.|++||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 0000 00111000 111347787666655442 22227899999
Q ss_pred CCCCceeEEec-CCCCEEEEEEcCCCcEEEEe----CCCcEEEEECCC---ceeeeEEecCCC-CceeeEcCCCCCEEEE
Q 024676 175 ARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA----DGSSVKFWDANH---FGLVKGYNMPCN-TESASLEPKLGNIFIA 245 (264)
Q Consensus 175 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (264)
-+ |..-..-+ ....-.+++|=|.|..+++- +++.|.++.-.. ++.+-.++.... ...+.|..+ +++|+.
T Consensus 229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~-sdiLAv 306 (1265)
T KOG1920|consen 229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN-SDILAV 306 (1265)
T ss_pred cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC-CCceee
Confidence 87 43222111 12234578899999888753 345788887432 222222333333 556788774 777777
Q ss_pred ---ecCCCeEEEEEcCcc
Q 024676 246 ---GGEDMWVHVFDFHTG 260 (264)
Q Consensus 246 ---gs~d~~v~vwd~~~g 260 (264)
..+...|++|-+.+.
T Consensus 307 ~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eecccccceEEEEEecCe
Confidence 778888999987653
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.80 E-value=0.011 Score=46.85 Aligned_cols=234 Identities=15% Similarity=0.071 Sum_probs=121.8
Q ss_pred eccCCCeeeeEeccCCCC------------------CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEE-EEECCCC
Q 024676 13 HGHSRPVVDLFYSPITPD------------------GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-CCLDANA 73 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~------------------g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~-v~~~~~~ 73 (264)
..|++.+.++.+- +.. |++++.|.+.+.+.+-+.++|+....|..- +.|.+ -...+++
T Consensus 29 gSHs~~~~avd~~--sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~ 105 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQ--SGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDG 105 (354)
T ss_pred ecCCceEEEecCC--CCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCC
Confidence 4688888776432 222 677899999999999999999765544321 22221 2346788
Q ss_pred cEEEEecCCCeEEEEeCCCCcEEEEeecCCeEE-EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec--cCCCCeEE
Q 024676 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150 (264)
Q Consensus 74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~ 150 (264)
..+..|+.|++...-|..+..++...+....+. +=+..|-...|+.+...|.+---..+.. ....+. ...+++..
T Consensus 106 glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~--~~~~~w~~~~~~PiF~ 183 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY--SSTEFWAATRFGPIFA 183 (354)
T ss_pred ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC--CcceehhhhcCCcccc
Confidence 899999999999999998887776655443332 2234553333444444444332222221 111111 11223222
Q ss_pred EEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCE-----------EEEEEcCCCcEEEEeCCCcEEEEECCCce
Q 024676 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-----------TSAEVSRDGRYITTADGSSVKFWDANHFG 219 (264)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-----------~~~~~s~~~~~l~~~~~~~i~iwd~~~~~ 219 (264)
--.+ -+..+..++- ||.+.-+| +.|++++.+....+| ..+.+..++-+.+...-..--+|..+.+.
T Consensus 184 splc-v~~sv~i~~V-dG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~ 260 (354)
T KOG4649|consen 184 SPLC-VGSSVIITTV-DGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT 260 (354)
T ss_pred Ccee-ccceEEEEEe-ccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc
Confidence 1000 0222333333 36666666 555555544333332 23334444444433322233456666654
Q ss_pred eeeEEecCCCCceeeEcCC---CCCEEEEecCCCeEEEEE
Q 024676 220 LVKGYNMPCNTESASLEPK---LGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~---~~~~~~~gs~d~~v~vwd 256 (264)
..+.|--+. ..+.++.. +.+++..++.|+.+.+-.
T Consensus 261 t~~vy~~p~--l~F~~h~~~~S~~~ll~~~s~dgkv~il~ 298 (354)
T KOG4649|consen 261 TLHVYLSPK--LRFDLHSPGISYPKLLRRSSGDGKVMILM 298 (354)
T ss_pred EEEEEeCcc--cceeccCCCCcchhhhhhhcCCCcEEEEE
Confidence 444442221 12222211 245677888999888874
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.72 E-value=0.0091 Score=51.95 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=77.7
Q ss_pred eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEe-eCCCCC
Q 024676 57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF-DLNRPD 135 (264)
Q Consensus 57 ~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~-d~~~~~ 135 (264)
+....-....+.++|++++++. ..||.-.|+.......... ..-...+|.+.++ +++-...+.|+++ +... +
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~-~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN-E 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE--
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecCcc-EEEEECCCeEEEEEcCcc-c
Confidence 3333445678999999999876 4577777777444333222 2233456777554 5555557889996 4422 2
Q ss_pred CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (264)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 215 (264)
....... ...+..+ +. | .++...++ +.|.+||+++++.+..+... +|..+.|+++|.+++...+..+.|++.
T Consensus 101 ~~k~i~~--~~~~~~I--f~-G-~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKL--PFSVEKI--FG-G-NLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp TT-------SS-EEEE--E--S-SSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred cceEEcC--CcccceE--Ec-C-cEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 1111111 1122222 32 4 44545454 58999999999999988865 489999999999988766667777654
Q ss_pred C
Q 024676 216 N 216 (264)
Q Consensus 216 ~ 216 (264)
.
T Consensus 173 ~ 173 (443)
T PF04053_consen 173 N 173 (443)
T ss_dssp -
T ss_pred c
Confidence 3
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.68 E-value=0.025 Score=49.24 Aligned_cols=217 Identities=14% Similarity=0.141 Sum_probs=101.1
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 97 (264)
....|.++| +|++++. ..||.-.++.....+.... +.-....|.+.+.+ |.-...++|+|+.-...+...
T Consensus 34 ~p~~ls~np---ngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~y-Av~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 34 YPQSLSHNP---NGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRY-AVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp --SEEEE-T---TSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEE-EEE-TTS-EEEEETTEE-TT-
T ss_pred CCeeEEECC---CCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccE-EEEECCCeEEEEEcCccccce
Confidence 466899996 8888877 5566767776443333222 22345678886665 444557889997432322222
Q ss_pred EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676 98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~ 177 (264)
.+..+..+..+-. |.+|+..+.+ .|.+||+.+++.. ..+. .. ++..+.|++++..+++.+ . ..+.|++...
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i-~~i~-v~-~vk~V~Ws~~g~~val~t-~-~~i~il~~~~ 174 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI-RRID-VS-AVKYVIWSDDGELVALVT-K-DSIYILKYNL 174 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EE-EEES-S--E-EEEEE-TTSSEEEEE--S--SEEEEEE-H
T ss_pred EEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHccee-eEEe-cC-CCcEEEEECCCCEEEEEe-C-CeEEEEEecc
Confidence 3333334444433 7777766544 7999999876532 3332 22 378899998777665554 3 4688876543
Q ss_pred C-----------ceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE
Q 024676 178 G-----------KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245 (264)
Q Consensus 178 ~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (264)
. ..+..+.. ...|.+..|..+ -++-+... .++.+-......+..+ ....--....++ ...+..
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~~i~~l--d~~~yllgy~~~-~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKYLVNGETGIIAHL--DKPLYLLGYLPK-ENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEEEETTEEEEEEE---SS--EEEEEETT-TTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcceEEEc--CCceEEEEEEcc-CCEEEE
Confidence 3 02222222 457888889877 44434433 7777433222223332 222222223332 234455
Q ss_pred ecCCCeEEEEEcC
Q 024676 246 GGEDMWVHVFDFH 258 (264)
Q Consensus 246 gs~d~~v~vwd~~ 258 (264)
.--|+.|..+.+.
T Consensus 250 ~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 250 IDRDGNVISYELD 262 (443)
T ss_dssp E-TT--EEEEE--
T ss_pred EECCCCEEEEEEC
Confidence 5555566655443
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.62 E-value=0.036 Score=48.03 Aligned_cols=233 Identities=16% Similarity=0.128 Sum_probs=119.9
Q ss_pred CCCCCeEEEEE-eCCCC----cEEEeCCCCceEEe-eeCCcCCEEEEEECCCCcEEEEecC-----------CCeEEEEe
Q 024676 27 ITPDGFFLVSA-SKDSS----PMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSA-----------DFTAKLWD 89 (264)
Q Consensus 27 ~~~~g~~l~t~-s~d~~----v~i~~~~~~~~~~~-~~~H~~~V~~v~~~~~~~~l~s~s~-----------D~~v~iwd 89 (264)
.+|||++||-+ +..|. +++.|+.+|+.+.. +..-.. ..+.|.++++.++.... ...|+.|+
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 45699888755 44444 88999999986543 332111 23899999766543322 33578888
Q ss_pred CCCCcE--EEEeec--CCe-EEEEEECCCCCEEEEeeC---C-CcEEEeeCCCC---CCCCeEeccC-CCCeEEEEEecC
Q 024676 90 ALTGDE--KHSFEH--KHI-VRACAFSEDTHLLLTGGF---E-KILRIFDLNRP---DAPPREVGNS-SGSIRTVAWLHS 156 (264)
Q Consensus 90 ~~~~~~--~~~~~~--~~~-v~~~~~~~~~~~l~s~~~---d-~~i~~~d~~~~---~~~~~~~~~~-~~~i~~~~~~~~ 156 (264)
+.+... ...++. ... ...+..++++++++..+. + ..+.+.++..+ ......+... .+....+... .
T Consensus 209 ~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~ 287 (414)
T PF02897_consen 209 LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-G 287 (414)
T ss_dssp TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-T
T ss_pred CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-C
Confidence 877642 244432 222 567888999998875432 3 45777787654 2233333332 2333333322 3
Q ss_pred CCeEEEEe--eCCCeEEEEECCCCce---e-EEecCCC--CEEEEEEcCCCcEEEEeCC--CcEEEEECCCceeeeEEec
Q 024676 157 DQTILSSC--TDSGGVRLWDARSGKI---V-QTLETKS--PVTSAEVSRDGRYITTADG--SSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 157 ~~~~~~~~--~~d~~v~iwd~~~~~~---~-~~~~~~~--~v~~~~~s~~~~~l~~~~~--~~i~iwd~~~~~~~~~~~~ 226 (264)
+..++.+- ...+.|--.++..... . ..+.... .+..+....+..++..-.+ ..|+++++..+........
T Consensus 288 ~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 288 DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 33344442 1235666677776552 2 2223333 3555555433323333334 3689999983444444544
Q ss_pred CCCCc--eeeEcCCCCCEEEEecC---CCeEEEEEcCccee
Q 024676 227 PCNTE--SASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQ 262 (264)
Q Consensus 227 ~~~~~--~~~~~~~~~~~~~~gs~---d~~v~vwd~~~g~~ 262 (264)
+.... .....+....++++.+. =.+++.||+.+|+.
T Consensus 368 p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 368 PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 43322 22222333444444333 45688888888874
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.62 E-value=0.0033 Score=57.92 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=94.4
Q ss_pred CeEEEEE-eCCCCcEEEeCCCCceEEeeeCCcCC-EEEEEECC-----CCcEEEEecCCCeEEEEeCCCCc--EEE----
Q 024676 31 GFFLVSA-SKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDA-----NALFSASGSADFTAKLWDALTGD--EKH---- 97 (264)
Q Consensus 31 g~~l~t~-s~d~~v~i~~~~~~~~~~~~~~H~~~-V~~v~~~~-----~~~~l~s~s~D~~v~iwd~~~~~--~~~---- 97 (264)
.++|+.- .....+.-.|++.|+.+....-|... |..++-.. +......|-.+..+-.||.+-.. ...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 33456777899999999999887654 65554321 12223445567778889976532 211
Q ss_pred EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
.+.......+++...+| +++.|+.+|.||+||- .+......+.....+|..++.+.+|.++|++|. ..+-++|.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 22234456666666666 6888999999999994 333333455566789999999999999999985 57888875
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.60 E-value=0.013 Score=49.73 Aligned_cols=219 Identities=17% Similarity=0.133 Sum_probs=116.8
Q ss_pred CCCCeEEEEE---------eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE
Q 024676 28 TPDGFFLVSA---------SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (264)
Q Consensus 28 ~~~g~~l~t~---------s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 98 (264)
|||+++++.. +..+...++|+++++....... ...+....|+|+++.++-.. ++.+.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 3577777664 3344577889998865433332 56778889999999987664 67899999877743321
Q ss_pred ee-c-----------------CCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676 99 FE-H-----------------KHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 99 ~~-~-----------------~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (264)
-. - -..-..+.|+|+++.|+..-. +..++.+.+........ .--.+..+.+-..|..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----~yp~~~~~~YPk~G~~ 154 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----QYPEVESIRYPKAGDP 154 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----SS-EEEEEE--BTTS-
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----cCCcccccccCCCCCc
Confidence 11 0 011246889999999987654 34455444321100000 0012333333222322
Q ss_pred EEEEeeCCCeEEEEECCCCceeE-E-e----cCCCCEEEEEEcCCCc-EEEEe--CC-C--cEEEEECCCceeeeEEec-
Q 024676 160 ILSSCTDSGGVRLWDARSGKIVQ-T-L----ETKSPVTSAEVSRDGR-YITTA--DG-S--SVKFWDANHFGLVKGYNM- 226 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~~~-~-~----~~~~~v~~~~~s~~~~-~l~~~--~~-~--~i~iwd~~~~~~~~~~~~- 226 (264)
.- .-.+.|+|+++++... . . .....+..+.|++++. +++.- .+ + .+.+.|..++.+-..+..
T Consensus 155 np-----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 155 NP-----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp -------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred CC-----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence 11 1257778998887532 1 1 1233488899999998 44432 22 2 466778876543222221
Q ss_pred -CC---CCceeeEc-CCCCCEEEEecCCCeEEEEEc
Q 024676 227 -PC---NTESASLE-PKLGNIFIAGGEDMWVHVFDF 257 (264)
Q Consensus 227 -~~---~~~~~~~~-~~~~~~~~~gs~d~~v~vwd~ 257 (264)
.. ......+. ++...++.....||.-+||-+
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 11 11233333 555666666668887777743
No 345
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.50 E-value=0.032 Score=49.11 Aligned_cols=149 Identities=16% Similarity=0.246 Sum_probs=90.2
Q ss_pred CCeeeeEeccCCCCCeEEEEEe---CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC----CcEEEEecCCCeEEEEe
Q 024676 17 RPVVDLFYSPITPDGFFLVSAS---KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLWD 89 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s---~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~----~~~l~s~s~D~~v~iwd 89 (264)
+||.+|+|- ||+.++... ..|.+++= +-..++.|+ -|..++|.|- .-.+......+.|-+|-
T Consensus 20 HPvhGlaWT----DGkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT----DGKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec----CCCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 589999997 887665543 22232221 112455665 5899999874 32445566778899998
Q ss_pred CCC-----CcEE--EEeec--CCe--EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676 90 ALT-----GDEK--HSFEH--KHI--VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 90 ~~~-----~~~~--~~~~~--~~~--v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (264)
+.. ++.+ ++.+. .-+ -.+|.|||...+|+.-.....--++++..........-...|-|.|.+|.++|.
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 752 2211 12222 222 357889999988776554444344555433322222224578899999999888
Q ss_pred eEEEEeeCCCeEEEEECC
Q 024676 159 TILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~~ 176 (264)
.++++.+..=.-.|||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 776665554567889854
No 346
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.036 Score=44.70 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=104.2
Q ss_pred eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee--eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~--~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
.|-+.-|.+|.|+| +.+.|.+......-.++-...|++++++ .+-.+ -.++++..++.++++-=+++.+.+.-+
T Consensus 82 ~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEE
Confidence 34445599999997 6778888887777778877789888765 33222 245778888999999888998888876
Q ss_pred CCCcEEE-------Ee---ec-CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCC-------CCeEE
Q 024676 91 LTGDEKH-------SF---EH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSS-------GSIRT 150 (264)
Q Consensus 91 ~~~~~~~-------~~---~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~-------~~i~~ 150 (264)
....... .+ .+ +.....++|+|..+.|+.+=..+.+++|......... .....+. ..+..
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 5542111 11 12 4467799999999999888888888888765222110 0000111 12444
Q ss_pred EEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 151 VAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
..+.+..+++++-+.+++.+--.|.+
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecC
Confidence 55555556666666666666666654
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.055 Score=46.52 Aligned_cols=188 Identities=16% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee---------cCCeEEEEEECC-----C---CCEEEEee
Q 024676 59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---------HKHIVRACAFSE-----D---THLLLTGG 121 (264)
Q Consensus 59 ~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~-----~---~~~l~s~~ 121 (264)
...++|.+++.+ |=-|++.|..+|.+.|.|++....+..-. ....++.+.|.. + +-+|+.|.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 357899999987 44589999999999999998876665532 122466666542 2 25677888
Q ss_pred CCCcEEEeeCC-CCCCCCe--E--e-ccCCCCeEEEEEe-cCC--------------------CeEEEEeeCCCeEEEEE
Q 024676 122 FEKILRIFDLN-RPDAPPR--E--V-GNSSGSIRTVAWL-HSD--------------------QTILSSCTDSGGVRLWD 174 (264)
Q Consensus 122 ~d~~i~~~d~~-~~~~~~~--~--~-~~~~~~i~~~~~~-~~~--------------------~~~~~~~~~d~~v~iwd 174 (264)
..|.+.+|.+. ....... . . ..+.+++..+.-. .+. ..+++.+++ ..+|++.
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe-~~irv~~ 241 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE-SDIRVFK 241 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S-SEEEEE-
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc-cceEEEe
Confidence 88999999763 1111111 1 1 1233455444433 110 134555555 7899999
Q ss_pred CCCCceeEEecCC-CCEEEEEEc-----CCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCC-----ceeeEcCCCCCE
Q 024676 175 ARSGKIVQTLETK-SPVTSAEVS-----RDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-----ESASLEPKLGNI 242 (264)
Q Consensus 175 ~~~~~~~~~~~~~-~~v~~~~~s-----~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 242 (264)
+.+.+..+..... .....+.+- ..+..|++ ..+|.++++.+...+.+...+.+... ...++.+ .|+.
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~-~Gdi 320 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR-NGDI 320 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T-TS-E
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC-CCCE
Confidence 9988876544322 223333442 23444444 56899999999999988888775321 2334444 4776
Q ss_pred EEEecCC
Q 024676 243 FIAGGED 249 (264)
Q Consensus 243 ~~~gs~d 249 (264)
|+-.|..
T Consensus 321 ~~~~gps 327 (395)
T PF08596_consen 321 FYWTGPS 327 (395)
T ss_dssp EEE-SSS
T ss_pred EEEeCcc
Confidence 6655443
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00079 Score=58.93 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=71.3
Q ss_pred CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEE-EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE
Q 024676 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE 140 (264)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~ 140 (264)
.|.-+.|+|.-.++|++-.+|.+-+..++ -..+.+++ +..+++ +++|.|+|++++.|-.||+|++.|++++......
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 45667899999999999999989888877 55566666 666777 9999999999999999999999999988765443
Q ss_pred eccCCCCeEEEEEe
Q 024676 141 VGNSSGSIRTVAWL 154 (264)
Q Consensus 141 ~~~~~~~i~~~~~~ 154 (264)
.......+.++-|.
T Consensus 101 ~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 101 LFSVETDISKGIWD 114 (665)
T ss_pred ccccccchheeecc
Confidence 33344456666553
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0008 Score=58.91 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEE-EEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANALFSASGSADFTAKLWDALTGDEK 96 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~-~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 96 (264)
.|.-+.|+|. -..+|++..+|.+.+.-.+ -+.+-++.-|...|. +++|.|||+++|.|=.||+|++-|+.++..+
T Consensus 22 ~i~~~ewnP~---~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPK---MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCc---cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4667889974 4589999999988777665 444556665555555 9999999999999999999999999998876
Q ss_pred EE--eecCCeEEEEEECC
Q 024676 97 HS--FEHKHIVRACAFSE 112 (264)
Q Consensus 97 ~~--~~~~~~v~~~~~~~ 112 (264)
.. +....+|....|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 66 44455666666653
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.47 E-value=0.006 Score=56.27 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=87.9
Q ss_pred EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC-------CCEEEEeeCCCcEEEeeCCCCCCCCe--E--eccCC
Q 024676 77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-------THLLLTGGFEKILRIFDLNRPDAPPR--E--VGNSS 145 (264)
Q Consensus 77 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~s~~~d~~i~~~d~~~~~~~~~--~--~~~~~ 145 (264)
........+.--|++.|+.+..+.....+....+.|+ +.-.+.|-.++.+..||.+-...... + ....+
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 3444556788889999998888875443333344443 22345677888899999875431111 1 11223
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (264)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 215 (264)
....|++-. .++ .++.|+.+|.||+||- .|+ ..-.+. ...||..+.++.||+++++..+..+-+++.
T Consensus 578 ~~Fs~~aTt-~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATT-EDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCceEEEec-CCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 345555533 344 4666778899999994 343 222333 368999999999999998877888888886
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.46 E-value=0.037 Score=43.90 Aligned_cols=133 Identities=12% Similarity=0.051 Sum_probs=81.3
Q ss_pred cEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEE
Q 024676 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153 (264)
Q Consensus 74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 153 (264)
.+++.||..+.++--|..+|..+..-.....+.+-+.- -+..++.|+..+.+.+.+.++++..+...- .+.+.+-+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~--~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI--LETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee--hhhhccceE
Confidence 45566777777777777777765554433333322111 256688899999999999988866544432 223333333
Q ss_pred ecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCE-EEEEEcC-CCcEEEEeCCCc
Q 024676 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-TSAEVSR-DGRYITTADGSS 209 (264)
Q Consensus 154 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~~~ 209 (264)
...+..++-.++.|+.....|.++..++...+....+ .+-+..| ++.+.++...+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 3334456666788899999999999998876654332 2334444 444444444443
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.005 Score=54.77 Aligned_cols=136 Identities=19% Similarity=0.230 Sum_probs=93.9
Q ss_pred CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (264)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (264)
|...|.--+++..+++++-|+.-|.+.+++-..+....... ....+..+..++++.++++|+..+.|.++.++.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 55667767888999999999999999999987775333222 2234556778999999999999999999988763322
Q ss_pred Ce-Ee----ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce-----eEEecCCCCEEEEEEc
Q 024676 138 PR-EV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-----VQTLETKSPVTSAEVS 196 (264)
Q Consensus 138 ~~-~~----~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~s 196 (264)
.. .. ..|...|++++|++++..++ +|.+.|+|..-.+.+... ...+...++|-.+.+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11 11 22467899999999877655 556669998887776211 1122334556656554
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.016 Score=39.86 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=62.5
Q ss_pred CCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC--CCCcee
Q 024676 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--CNTESA 233 (264)
Q Consensus 156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~ 233 (264)
++...|+.+++|..||+|+-. +.+.++.....+.++.-.+.++|..+..+|+|-+|+-. .+.+... ..+.+.
T Consensus 13 dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~----~RlWRiKSK~~~~~~ 86 (111)
T PF14783_consen 13 DGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS----QRLWRIKSKNQVTSM 86 (111)
T ss_pred CCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc----ceeeeeccCCCeEEE
Confidence 445677788999999999754 56777777788999988888888878888999888752 2233332 233333
Q ss_pred eEcC---CCCCEEEEecCCCeEE
Q 024676 234 SLEP---KLGNIFIAGGEDMWVH 253 (264)
Q Consensus 234 ~~~~---~~~~~~~~gs~d~~v~ 253 (264)
.... +.-..|++|=.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 3322 2224688887777764
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.067 Score=45.91 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=129.4
Q ss_pred CCe-EEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEec---CCCeEEEEeCCCCcEEEEeecCCe
Q 024676 30 DGF-FLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHI 104 (264)
Q Consensus 30 ~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~ 104 (264)
++. ..+....+..+.+.|..+.+...... |. .-..+++++++..+..+. .++++-+.|..++...........
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 444 55555556889999977666554443 33 446789999997765443 378899999888887777544332
Q ss_pred EEEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCC-e---EeccCCCCeEEEEEecCCCeEEEEeeCC--CeEEEEECCC
Q 024676 105 VRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP-R---EVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDARS 177 (264)
Q Consensus 105 v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~-~---~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~ 177 (264)
-..++++|+++.++.+. .++.+.+.|........ . ... .......+.+.+++..+.+....+ +.+...|..+
T Consensus 162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 28899999999777665 67899999965443221 0 011 112234566777777666665554 6899999999
Q ss_pred CceeEE-ecCCC-CEEEEEEcCCCcEEEEe--CCCcEEEEECCCceeeeEEec
Q 024676 178 GKIVQT-LETKS-PVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 178 ~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~ 226 (264)
+..... ..... ....+.++|+|.++-.. ..+.+.+-|..+......+..
T Consensus 241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 887664 22222 45678899999876443 346888889888776666543
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.40 E-value=0.043 Score=47.14 Aligned_cols=201 Identities=14% Similarity=0.150 Sum_probs=103.6
Q ss_pred cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--eeC------CcCCEEEEEEC-----CCC-
Q 024676 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEG------HKGAVWSCCLD-----ANA- 73 (264)
Q Consensus 8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--~~~------H~~~V~~v~~~-----~~~- 73 (264)
+..+++...++|.+|+.+. =-++|.|..+|.+.|.|.+....+.. +.. ....|.++.|. .|+
T Consensus 78 P~~l~~~~~g~vtal~~S~----iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSD----IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEE---S-SEEEEEE-B----TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred chhheeccCCcEeEEecCC----CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 3444456689999999984 33889999999999999987665533 222 23456677774 343
Q ss_pred --cEEEEecCCCeEEEEeCCC---CcEEEEe-----ecCCeEEEEE-ECCCC--------------------CEEEEeeC
Q 024676 74 --LFSASGSADFTAKLWDALT---GDEKHSF-----EHKHIVRACA-FSEDT--------------------HLLLTGGF 122 (264)
Q Consensus 74 --~~l~s~s~D~~v~iwd~~~---~~~~~~~-----~~~~~v~~~~-~~~~~--------------------~~l~s~~~ 122 (264)
-++..|...|.+.+|.+.- +.-...+ .+..++..+. ++.+. +-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4567788889999998752 1111111 2334443332 32220 22333445
Q ss_pred CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe----cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC-----CEEEE
Q 024676 123 EKILRIFDLNRPDAPPREVGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-----PVTSA 193 (264)
Q Consensus 123 d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~v~~~ 193 (264)
+..+|++...+.+...... ...-....+.+. ......|++-..+|.|+++.+..-+.+....... .....
T Consensus 234 e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 6789999887654333222 111111222232 1244566666788999999999988887665422 23456
Q ss_pred EEcCCCcEEEEeCCCcEEEE
Q 024676 194 EVSRDGRYITTADGSSVKFW 213 (264)
Q Consensus 194 ~~s~~~~~l~~~~~~~i~iw 213 (264)
.++++|..+.-.+...+.++
T Consensus 313 sis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEE
T ss_pred EECCCCCEEEEeCcccEEEE
Confidence 67889987765544444433
No 356
>PHA02713 hypothetical protein; Provisional
Probab=97.39 E-value=0.015 Score=52.38 Aligned_cols=210 Identities=11% Similarity=0.055 Sum_probs=97.1
Q ss_pred CcEEEeCCCCceEE--eeeCCcCCEEEEEECCCCcEEEEecCC------CeEEEEeCCCCcEEEEeec-CCeE-EEEEEC
Q 024676 42 SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDEKHSFEH-KHIV-RACAFS 111 (264)
Q Consensus 42 ~v~i~~~~~~~~~~--~~~~H~~~V~~v~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~-~~~v-~~~~~~ 111 (264)
.+..||..++++.. .+...... .+++. .++...+.|+.+ ..+-.||..+..= ...+. ..+- ......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEE
Confidence 46678888887643 22111111 22333 245555666643 3466677766531 11111 1110 111122
Q ss_pred CCCCEEEEeeCCC-----cEEEeeCCCCCCCCeEeccCCCC--eEEEEEecCCCeEEEEeeCC-----------------
Q 024676 112 EDTHLLLTGGFEK-----ILRIFDLNRPDAPPREVGNSSGS--IRTVAWLHSDQTILSSCTDS----------------- 167 (264)
Q Consensus 112 ~~~~~l~s~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~d----------------- 167 (264)
-++++.+.||.++ .+..||..+.+.. ...+-..+ -.+++-. ++.+.+.|+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~--~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWK--MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEE--ECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccc
Confidence 3566777777653 3667887654322 21111111 1111212 34444444332
Q ss_pred ------CeEEEEECCCCceeE--EecCCCCEEEEEEcCCCc-EEEEeCC------CcEEEEECCC---ceeeeEEecCCC
Q 024676 168 ------GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGR-YITTADG------SSVKFWDANH---FGLVKGYNMPCN 229 (264)
Q Consensus 168 ------~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~-~l~~~~~------~~i~iwd~~~---~~~~~~~~~~~~ 229 (264)
..+..||.++.+-.. .+.....-.+++. -+++ |++++.+ ..+..||.++ ++.+...+.+-.
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 247778888775322 1111111112222 2454 4444432 2367788875 333332222111
Q ss_pred CceeeEcCCCCCEEEEecCCC--eEEEEEcCcce
Q 024676 230 TESASLEPKLGNIFIAGGEDM--WVHVFDFHTGE 261 (264)
Q Consensus 230 ~~~~~~~~~~~~~~~~gs~d~--~v~vwd~~~g~ 261 (264)
....+.. ++++++.||.|+ .+-.||..+.+
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 1112222 588999999888 78888877654
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.072 Score=45.71 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=128.3
Q ss_pred EEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC---CCcEEEeeCCCCCCCCeE
Q 024676 65 WSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPRE 140 (264)
Q Consensus 65 ~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~ 140 (264)
..+++++.+..+ ++...+..|.+.|..+...............+.++|+++.++.+.. ++.+.+.|-.+......
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~- 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT- 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-
Confidence 456778877754 5556678999999887777776665556678899999988877654 67788888765554333
Q ss_pred eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE-E----ecCCCCEEEEEEcCCCcEEEEe-C-C--CcEE
Q 024676 141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-T----LETKSPVTSAEVSRDGRYITTA-D-G--SSVK 211 (264)
Q Consensus 141 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~-~----~~~~~~v~~~~~s~~~~~l~~~-~-~--~~i~ 211 (264)
...-..+ ..+++.|.+..+.++-..++.|.+.|.++..... . .........+.++|+|.++-.. . + +.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 2221223 6778888888777776778999999987766553 1 2223345668899999754332 2 2 4788
Q ss_pred EEECCCceeeeE-EecCC-CCceeeEcCCCCCEEEEe-cCCCeEEEEEcCcce
Q 024676 212 FWDANHFGLVKG-YNMPC-NTESASLEPKLGNIFIAG-GEDMWVHVFDFHTGE 261 (264)
Q Consensus 212 iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g-s~d~~v~vwd~~~g~ 261 (264)
..|..++..... +.... .+......|. +..+... +..+.+.+-|..+..
T Consensus 235 ~id~~~~~v~~~~~~~~~~~~~~v~~~p~-g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 235 KIDTATGNVTATDLPVGSGAPRGVAVDPA-GKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EEeCCCceEEEeccccccCCCCceeECCC-CCEEEEEecCCCeEEEEeCCCCc
Confidence 888888776554 33333 3444566665 5544443 445778888766544
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.37 E-value=0.054 Score=44.04 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=89.6
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE----------
Q 024676 71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---------- 140 (264)
Q Consensus 71 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~---------- 140 (264)
..+..++.|..+| +.+++...............|..+..-|+-+.++.- .|+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence 3466777788888 888888433333333444458888888877776654 4599999998654332210
Q ss_pred ---eccCCCCeEEEE--EecCCCeEEEEeeCCCeEEEEECCCC-----ceeEEecCCCCEEEEEEcCCCcEEEEeCCCcE
Q 024676 141 ---VGNSSGSIRTVA--WLHSDQTILSSCTDSGGVRLWDARSG-----KIVQTLETKSPVTSAEVSRDGRYITTADGSSV 210 (264)
Q Consensus 141 ---~~~~~~~i~~~~--~~~~~~~~~~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i 210 (264)
.......+..++ -.+.+...++.+.. ++|.+|..... +...++.....+.+++|.++ .+..+..+..
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~--~i~v~~~~~f 159 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGN--KICVGTSKGF 159 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCC--EEEEEeCCce
Confidence 111122333333 12334445555554 68999887642 45566777778889999843 4444435567
Q ss_pred EEEECCCceeee
Q 024676 211 KFWDANHFGLVK 222 (264)
Q Consensus 211 ~iwd~~~~~~~~ 222 (264)
.+.|+.++....
T Consensus 160 ~~idl~~~~~~~ 171 (275)
T PF00780_consen 160 YLIDLNTGSPSE 171 (275)
T ss_pred EEEecCCCCceE
Confidence 888888765443
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.34 E-value=0.071 Score=44.55 Aligned_cols=208 Identities=19% Similarity=0.142 Sum_probs=108.9
Q ss_pred CcEEEeCCCCceEEeeeCCc-CCEEE---EEECCC----CcEEEEecC----------CCeEEEEeCCCC-----c--EE
Q 024676 42 SPMLRNGETGDWIGTFEGHK-GAVWS---CCLDAN----ALFSASGSA----------DFTAKLWDALTG-----D--EK 96 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~-~~V~~---v~~~~~----~~~l~s~s~----------D~~v~iwd~~~~-----~--~~ 96 (264)
.+++.|..+.+.+.++.-.. ..+.+ +.+..+ ..+++.|.. .|.+.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46777877777665543211 12333 334432 455554421 288999998884 1 22
Q ss_pred EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC-CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676 97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (264)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~ 175 (264)
.....+.+|++++-- ++++++ +..+.+.+|++...+ ............+.++... +..++ .+.....+.++..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~--~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~-vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVV--AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYIL-VGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEE--EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEE-EEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh-CCEEEE--eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEE-EEEcccCEEEEEE
Confidence 334567888887655 444333 334889999997666 3333333333456666544 33444 4454467777644
Q ss_pred CC-CceeEEe---cCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCC-----------ceeeeEEecCCCCcee---eEc
Q 024676 176 RS-GKIVQTL---ETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANH-----------FGLVKGYNMPCNTESA---SLE 236 (264)
Q Consensus 176 ~~-~~~~~~~---~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~-----------~~~~~~~~~~~~~~~~---~~~ 236 (264)
+. .+.+..+ .....+.++.+-+++..+ ++..++.+.++.... ...+..|..+....++ .+.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 32 2222222 123347777777565454 444578888876642 2334555666555554 333
Q ss_pred CC--CC-----CEEEEecCCCeEEEE
Q 024676 237 PK--LG-----NIFIAGGEDMWVHVF 255 (264)
Q Consensus 237 ~~--~~-----~~~~~gs~d~~v~vw 255 (264)
+. .. ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 31 11 247788888888743
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.34 E-value=0.00059 Score=36.25 Aligned_cols=34 Identities=41% Similarity=0.685 Sum_probs=29.4
Q ss_pred EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEe
Q 024676 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN 47 (264)
Q Consensus 11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~ 47 (264)
.+.+|...|.++.|+| .+.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 3467999999999996 557899999999999985
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.064 Score=43.19 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=108.0
Q ss_pred EEEECCCCcE-EEEecCCCe-EEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEee-----CCCcEEEeeCCCCC
Q 024676 66 SCCLDANALF-SASGSADFT-AKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGG-----FEKILRIFDLNRPD 135 (264)
Q Consensus 66 ~v~~~~~~~~-l~s~s~D~~-v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~-----~d~~i~~~d~~~~~ 135 (264)
.++++|...+ ++-+-+-|+ ..++|..+.....+.. ..+.--.=.|+|++.+|++.= ..+.|-+||.+.+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 4567776544 445555554 4568887765444432 222233346899999999763 34679999987543
Q ss_pred CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE--------------------EECCCCceeEEecC-----CCCE
Q 024676 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL--------------------WDARSGKIVQTLET-----KSPV 190 (264)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i--------------------wd~~~~~~~~~~~~-----~~~v 190 (264)
...-++..+.-....+.|.+++..+++.. |.|.. .|..+|+.+.+... +-.+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 33334444444556678888888766653 33333 34444444322211 1235
Q ss_pred EEEEEcCCCcEEEEeC------CCcEEEEECCCceeeeEEecCCC--------CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676 191 TSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCN--------TESASLEPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 191 ~~~~~s~~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gs~d~~v~vwd 256 (264)
.-++..+||+...+.. |.---+=-.+.++.++-+..+.. ..+++.+-+.+-..+|.-..+..-+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 5566666666554432 11111111233444444444322 124445544566667777788889999
Q ss_pred cCcceee
Q 024676 257 FHTGEQI 263 (264)
Q Consensus 257 ~~~g~~i 263 (264)
.++|+-+
T Consensus 309 a~tG~vv 315 (366)
T COG3490 309 AATGAVV 315 (366)
T ss_pred cCCCcEE
Confidence 9999754
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.021 Score=45.87 Aligned_cols=182 Identities=15% Similarity=0.231 Sum_probs=106.2
Q ss_pred CCCeEEEEEeCCC-----CcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCCcEEEEecCC-------C-----------e
Q 024676 29 PDGFFLVSASKDS-----SPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSAD-------F-----------T 84 (264)
Q Consensus 29 ~~g~~l~t~s~d~-----~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-------~-----------~ 84 (264)
+||.+|...-.|. -|-|||..-+ +.+.+|..|.-.-+.+.+.+||..++.+..- + +
T Consensus 123 ~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS 202 (366)
T COG3490 123 PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS 202 (366)
T ss_pred CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence 4899988876654 4677887643 4577888887666788999999988765331 1 2
Q ss_pred EEEEeCCCCcEEE--Eee---cCCeEEEEEECCCCCEEEEeeCCCcEE----Eee-CCCCCCCCeEec-------cCCCC
Q 024676 85 AKLWDALTGDEKH--SFE---HKHIVRACAFSEDTHLLLTGGFEKILR----IFD-LNRPDAPPREVG-------NSSGS 147 (264)
Q Consensus 85 v~iwd~~~~~~~~--~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~----~~d-~~~~~~~~~~~~-------~~~~~ 147 (264)
+-+-|..+|+.+. +++ +...++.+...+++..++.|-+.+.-. +.- ...++. .+.+. .....
T Consensus 203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~-l~~~~~pee~~~~~anY 281 (366)
T COG3490 203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP-LEFLDLPEEQTAAFANY 281 (366)
T ss_pred EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc-CcccCCCHHHHHHHHhh
Confidence 2223333333222 111 234588888999998887665444311 000 011111 11110 11234
Q ss_pred eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEE
Q 024676 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFW 213 (264)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw 213 (264)
+-+++.+-.++.+.+++...+..-+||..+|.++..-... ....+....+ -|.+++.++.+.++
T Consensus 282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-daaGva~~~~-gf~vssg~G~~~~~ 345 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-DAAGVAAAKG-GFAVSSGQGRIIFY 345 (366)
T ss_pred hhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-ccccceeccC-ceEEecCCceEEec
Confidence 6677777777888888888789999999999987543321 2222333222 35555555666665
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.26 E-value=0.13 Score=46.06 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=85.4
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEeee--CCcC--CEEEEEECCCCcEEEEec-----CCCeEEEEeCCCCcEEEEeecC
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEHK 102 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~--~V~~v~~~~~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~ 102 (264)
..++.++.|+.+.-.|..+|+.+=.+. .+.. .+.+--.-.++..++..+ .++.|.-+|.++|+.+..+...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 356778888888888999998653332 2211 111110111444443322 3688999999999876654210
Q ss_pred --C------------------------------eE-EEEEECCCCCEEEEeeC-----CC-----------cEEEeeCCC
Q 024676 103 --H------------------------------IV-RACAFSEDTHLLLTGGF-----EK-----------ILRIFDLNR 133 (264)
Q Consensus 103 --~------------------------------~v-~~~~~~~~~~~l~s~~~-----d~-----------~i~~~d~~~ 133 (264)
. .+ ....++|...+++.+.. ++ .+--.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 0 11 13467777777776541 22 355567777
Q ss_pred CCCCCeEeccCC--------CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCcee
Q 024676 134 PDAPPREVGNSS--------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIV 181 (264)
Q Consensus 134 ~~~~~~~~~~~~--------~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~ 181 (264)
++.....+..+. ....-+..-.+++ .+++.+..+|.+.+.|-++|+.+
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 777665443221 1111122212333 36777788899999999999876
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.11 Score=44.99 Aligned_cols=176 Identities=14% Similarity=0.174 Sum_probs=85.9
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee---cCCeEE-----EEEECCC
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVR-----ACAFSED 113 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~v~-----~~~~~~~ 113 (264)
.|+||+.. |+.+..+.--.+.+.++.|+.+..++ .-..||+++++|..... ...+. ....|. ...+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 47888765 65666554333789999999866554 45679999999986333 11111 111121 1122334
Q ss_pred CCEEEEeeCCCcEEEee-CCCCCCCCeE---eccCC------CCeEE-EEEecCCCeEEEEeeCCCeEEEEECCCCceeE
Q 024676 114 THLLLTGGFEKILRIFD-LNRPDAPPRE---VGNSS------GSIRT-VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182 (264)
Q Consensus 114 ~~~l~s~~~d~~i~~~d-~~~~~~~~~~---~~~~~------~~i~~-~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~ 182 (264)
|-.+++ .++.+.+.+ .... ..... ..... ..... ..+..+....+.. ..++.+.+.+....+.
T Consensus 139 GivvLt--~~~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~-~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILL-ANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CEEEEC--CCCeEEEEeCcccc-chhhccccCCCcccccccccccccceEeecCcceEEEE-ecCCEEEEEEcccccc--
Confidence 422332 233333322 2211 01011 00000 00111 1122222222222 2334555444332211
Q ss_pred EecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC
Q 024676 183 TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP 227 (264)
Q Consensus 183 ~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~ 227 (264)
+....++..+++||+|++++. .+++.+.+....-.+..-.+...
T Consensus 213 -i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 213 -IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred -ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 334468999999999999876 45678888775444444445443
No 365
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0023 Score=58.20 Aligned_cols=106 Identities=15% Similarity=0.253 Sum_probs=75.5
Q ss_pred EECCCCcEEEEec----CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc
Q 024676 68 CLDANALFSASGS----ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143 (264)
Q Consensus 68 ~~~~~~~~l~s~s----~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~ 143 (264)
.|+|...+++.++ +.|+|-||- .+|++.+...-+-.+.++||+|..-.|+.|-.-+.+.+|..++.+ .......
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~t 99 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVET 99 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-eeeeccC
Confidence 5666666665443 457788875 456655544433345679999998888888777999999876543 2344456
Q ss_pred CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 144 ~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
|+.++..+.|++++. .+.++..-|.|.+|...
T Consensus 100 h~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 889999999998665 56677777999999765
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.018 Score=49.93 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=90.2
Q ss_pred EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE--E-----EEecCCCeEEEEeCCCCcE-EEEe-e-----
Q 024676 35 VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-----ASGSADFTAKLWDALTGDE-KHSF-E----- 100 (264)
Q Consensus 35 ~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~--l-----~s~s~D~~v~iwd~~~~~~-~~~~-~----- 100 (264)
.++..-..+.=-|++.|+.+.+.+-|.+ |..+.+.|+.++ | ..|-.|..|.-||.+-... +..+ +
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3344444455568888888888777766 777788776542 1 2355577787888764321 1111 1
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
......+.+-. .+.+++.||.+|.||+||. .+......++....+|..+..+.++.+++++|- ..+-+-|+.
T Consensus 429 ~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TYLLLIDTL 500 (644)
T ss_pred cccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc--cEEEEEEEe
Confidence 11223333333 4457889999999999996 455445666677889999999999999999874 577777764
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.06 E-value=0.089 Score=47.58 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=103.4
Q ss_pred CCeEEEEEeCCC------CcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC------CeEEEEeCCCCcE
Q 024676 30 DGFFLVSASKDS------SPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDE 95 (264)
Q Consensus 30 ~g~~l~t~s~d~------~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D------~~v~iwd~~~~~~ 95 (264)
.+..++.|+.++ .+..+|..++++... +...+. -.++++. ++...++|+.| .++-.||..++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 456677777774 466788888876533 222222 2333433 34566778888 366677776654
Q ss_pred EEEee------cCCeEEEEEECCCCCEEEEeeCCCc-----EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 96 KHSFE------HKHIVRACAFSEDTHLLLTGGFEKI-----LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 96 ~~~~~------~~~~v~~~~~~~~~~~l~s~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
....+ ....+. .-++.+.+.|+.|+. +-.||..+.+..... +.........-..-++.+.+.|
T Consensus 361 W~~~a~M~~~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred eeccCCccCccccceeE----EECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEc
Confidence 11111 111222 225667777888865 445665544332111 1111222222222244555544
Q ss_pred eCC------CeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcE-EEEeCCC-----cEEEEECCCceeeeEEecCCCC
Q 024676 165 TDS------GGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGS-----SVKFWDANHFGLVKGYNMPCNT 230 (264)
Q Consensus 165 ~~d------~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~-l~~~~~~-----~i~iwd~~~~~~~~~~~~~~~~ 230 (264)
+.+ ..+..||..+++....-... ..-..++.- ++.+ ++++.++ ++..||.++.+-...-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 422 35788999888754322221 112222222 4444 4444443 3777887765322211121111
Q ss_pred ceeeEcCCCCCEEEEecCCCe
Q 024676 231 ESASLEPKLGNIFIAGGEDMW 251 (264)
Q Consensus 231 ~~~~~~~~~~~~~~~gs~d~~ 251 (264)
.......-.+..++.||.|+.
T Consensus 514 s~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ccccEEEECCEEEEEecccCc
Confidence 111111224788889988764
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.05 E-value=0.14 Score=42.58 Aligned_cols=195 Identities=17% Similarity=0.178 Sum_probs=105.9
Q ss_pred CCCeEEEEEe--CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC-CCcEEEEee-----
Q 024676 29 PDGFFLVSAS--KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGDEKHSFE----- 100 (264)
Q Consensus 29 ~~g~~l~t~s--~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~----- 100 (264)
.||+++...- -.-+|.|.|+..++++.++.--. ...+--.. ..-+.+-+.||++.-..+. .|+....-.
T Consensus 104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 4777665543 23357778888888877775321 11111122 2346677889988888876 454432211
Q ss_pred cCCeE-EEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-cc----------CCCCeEEEEEecCCCeEEEEee---
Q 024676 101 HKHIV-RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GN----------SSGSIRTVAWLHSDQTILSSCT--- 165 (264)
Q Consensus 101 ~~~~v-~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~----------~~~~i~~~~~~~~~~~~~~~~~--- 165 (264)
..+++ ..-.+...+..++-.+..|.++-.|+.......... .- ..+...-+++.+..+.+.+--.
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 11222 122333444444446778888777765433211110 00 0111122344443333322110
Q ss_pred ----CC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCc-EE-EEe-CCCcEEEEECCCceeeeEEec
Q 024676 166 ----DS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YI-TTA-DGSSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 166 ----~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l-~~~-~~~~i~iwd~~~~~~~~~~~~ 226 (264)
.| .+|=++|+.+++.+..+....++.++.++.+.+ +| +.. .++.+.+||..+++.++...-
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 11 137777999999998888777888999998875 44 333 468999999999998887753
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.96 E-value=0.18 Score=42.14 Aligned_cols=175 Identities=10% Similarity=0.075 Sum_probs=96.0
Q ss_pred CeEEEEEeC----------CCCcEEEeCCCC----ceEEee--eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676 31 GFFLVSASK----------DSSPMLRNGETG----DWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (264)
Q Consensus 31 g~~l~t~s~----------d~~v~i~~~~~~----~~~~~~--~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~ 94 (264)
-.+++.|.. .|.+.++++... ..+..+ ...+++|.+++-- ++.++++. .+.+.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcc
Confidence 467777744 277888888773 112222 2357899998765 44444433 4789999988777
Q ss_pred -EEEEeec--CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--ccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 95 -EKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 95 -~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
......+ ...+.++... +.+++.|...+.+.++..+......... ....-.+.++.+..++. .++++..+|.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gn 195 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGN 195 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCe
Confidence 4443333 3345555444 5588888887788877543321112222 22234567777774444 5666677899
Q ss_pred EEEEECCC-------Cc----eeEEecCCCCEEEE---EEcC--CCc-------EEEEeCCCcEE
Q 024676 170 VRLWDARS-------GK----IVQTLETKSPVTSA---EVSR--DGR-------YITTADGSSVK 211 (264)
Q Consensus 170 v~iwd~~~-------~~----~~~~~~~~~~v~~~---~~s~--~~~-------~l~~~~~~~i~ 211 (264)
+.++.... ++ ....+.....++++ .+.| .+. .+.++.+|.|-
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 99987652 22 23344556678777 4445 221 44455566654
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.95 E-value=0.22 Score=43.12 Aligned_cols=192 Identities=14% Similarity=0.085 Sum_probs=98.0
Q ss_pred EEEEECCCCcEEE-EecCC----CeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCC-----------cEE
Q 024676 65 WSCCLDANALFSA-SGSAD----FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEK-----------ILR 127 (264)
Q Consensus 65 ~~v~~~~~~~~l~-s~s~D----~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~-----------~i~ 127 (264)
....++|++++++ +-+.. ..+++.|+.+++.+... ..... ..+.|.++++.++....+. .++
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 4578899999875 32333 46999999999755432 22111 2389999988877665443 267
Q ss_pred EeeCCCCCCCCeEecc-CC-CC-eEEEEEecCCCeEEEEeeCCC---eEEEEECCCC-----ceeEEecCCCCE-EEEEE
Q 024676 128 IFDLNRPDAPPREVGN-SS-GS-IRTVAWLHSDQTILSSCTDSG---GVRLWDARSG-----KIVQTLETKSPV-TSAEV 195 (264)
Q Consensus 128 ~~d~~~~~~~~~~~~~-~~-~~-i~~~~~~~~~~~~~~~~~~d~---~v~iwd~~~~-----~~~~~~~~~~~v-~~~~~ 195 (264)
.|.+.+.......+.. .. .. ...+..++++.++++...... .+.+.|+..+ ...........+ ..+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 7777655432223222 12 22 456667787787776555433 4888888875 222222222233 33433
Q ss_pred cCCCcEEEEeC----CCcEEEEECCCcee--ee-EEecCCC-CceeeEcCCCCCEEEEecCCC--eEEEEEcC
Q 024676 196 SRDGRYITTAD----GSSVKFWDANHFGL--VK-GYNMPCN-TESASLEPKLGNIFIAGGEDM--WVHVFDFH 258 (264)
Q Consensus 196 s~~~~~l~~~~----~~~i~iwd~~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~gs~d~--~v~vwd~~ 258 (264)
. ++.++..++ .+.|.-.++.+... .. .+.-+.. ..-..+....+.+++..-.|+ .|+++++.
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 3 554444332 23455556665442 11 1211111 111112221245566655554 45666765
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.0027 Score=57.78 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=76.2
Q ss_pred eEeccCCCCCeEEEEEeC----CCCcEEEeCCCCceEEeeeCCcCC--EEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676 22 LFYSPITPDGFFLVSASK----DSSPMLRNGETGDWIGTFEGHKGA--VWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (264)
Q Consensus 22 ~~~~~~~~~g~~l~t~s~----d~~v~i~~~~~~~~~~~~~~H~~~--V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 95 (264)
..|+|..| +++.++- -|+|-|+- ++|++.+... -| +.+++|+|....++.|-.-|.+.+|...+.+.
T Consensus 21 ~SWHPseP---lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 21 SSWHPSEP---LFAVASFSPERGGSVTIFA-DTGEPQRDVT---YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccCCCCc---eeEEEEecCCCCceEEEEe-cCCCCCcccc---cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 57887555 6666653 35666663 4455432221 12 35589999988889999999999999877654
Q ss_pred EEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676 96 KHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (264)
Q Consensus 96 ~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 132 (264)
-.. ..|+.++..+.|+|+|..++++..-+.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 332 3488899999999999999999988999999754
No 372
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.88 E-value=0.17 Score=40.68 Aligned_cols=129 Identities=18% Similarity=0.182 Sum_probs=76.7
Q ss_pred EEEEeecCC--eEEEEEECCCCCEEEEeeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 95 EKHSFEHKH--IVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 95 ~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
.+..++|.. ....+.+..++.++-+.+.-| .++.+|+.+++.......+..-==..++.. .+..+..+ -.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLT-Wk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLT-WKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEE-SSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEE-ecCCeE
Confidence 455666654 466888877888888877655 688899988765433322221111223333 23333333 466899
Q ss_pred EEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC
Q 024676 171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP 227 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~ 227 (264)
.+||..+.+.+.++.....--.++ .+++.|..++ ...++++|..+++..+.+...
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 999999999888776554444444 3555554444 478999999999888877654
No 373
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.85 E-value=0.33 Score=43.60 Aligned_cols=186 Identities=17% Similarity=0.163 Sum_probs=104.9
Q ss_pred cEEEEecCCCeEEEEeCCCCcEEEEeecCCe--EE----------EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHI--VR----------ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV 141 (264)
Q Consensus 74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--v~----------~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 141 (264)
..++.++.++.|.-.|..+|+.+..+....+ +. .+.+ .+..++.++.|+.+.-+|.++++......
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 3555566678888899999988877654321 11 1111 23456778889999999988887655432
Q ss_pred cc-CC-C-CeEEEEEecCCCeEEEEee-----CCCeEEEEECCCCceeEEecCC--C-----------------------
Q 024676 142 GN-SS-G-SIRTVAWLHSDQTILSSCT-----DSGGVRLWDARSGKIVQTLETK--S----------------------- 188 (264)
Q Consensus 142 ~~-~~-~-~i~~~~~~~~~~~~~~~~~-----~d~~v~iwd~~~~~~~~~~~~~--~----------------------- 188 (264)
.. .. + .+.+.-... ++.+++..+ .++.|.-+|.++|+.+..+... .
T Consensus 148 ~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 11 11 0 111100011 334454432 2588999999999987665321 0
Q ss_pred --------CEEEEEEcCCCcE--EEEeC----CC-----------cEEEEECCCceeeeEEecC----------CCCcee
Q 024676 189 --------PVTSAEVSRDGRY--ITTAD----GS-----------SVKFWDANHFGLVKGYNMP----------CNTESA 233 (264)
Q Consensus 189 --------~v~~~~~s~~~~~--l~~~~----~~-----------~i~iwd~~~~~~~~~~~~~----------~~~~~~ 233 (264)
.....++.|.-.+ +-+++ .+ .|.=.|+++++..=.|+.. ..+.-.
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 1122344444322 22222 11 3445577777765444431 111112
Q ss_pred eEcCCCCC---EEEEecCCCeEEEEEcCcceee
Q 024676 234 SLEPKLGN---IFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 234 ~~~~~~~~---~~~~gs~d~~v~vwd~~~g~~i 263 (264)
.. +.+|+ .++.+..+|.+++.|.++||.|
T Consensus 307 d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DL-KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred Ee-ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 22 22344 8889999999999999999875
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.66 E-value=0.59 Score=43.94 Aligned_cols=240 Identities=13% Similarity=0.109 Sum_probs=128.3
Q ss_pred CCCeeeeEeccCCCCCe---EEEEEeCCCCcEEEeC-CCCceEEe--eeCCc--CCEEEEEECCCCcEEEEecCCCeEEE
Q 024676 16 SRPVVDLFYSPITPDGF---FLVSASKDSSPMLRNG-ETGDWIGT--FEGHK--GAVWSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~---~l~t~s~d~~v~i~~~-~~~~~~~~--~~~H~--~~V~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
+.+|.|+.++|.-.+.+ +++.|.++..+++-.. .+...+.. +.+.. -.|...++-.|..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 45789999998743334 8999999998766432 23332211 22221 23455667777889999999999888
Q ss_pred EeC--CCCcE---EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE-EEecCC-CeE
Q 024676 88 WDA--LTGDE---KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-AWLHSD-QTI 160 (264)
Q Consensus 88 wd~--~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~~~ 160 (264)
+-+ .++.. +...--..|+..-.|+..++.-+-+..|+..-+|--+. ....... ....+..+ .++++. +--
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spl--s~kev~~~c~f~s~a~~d~ 686 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPL--SLKEVNHMCPFNSDAYPDS 686 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEecc--chHHhhhhcccccccCCce
Confidence 754 44321 11111234555556665555544555666666665431 1111110 11112222 222222 223
Q ss_pred EEEeeCCCeEEEEECCCCce--eEEecCCCCEEEEEEcCCCcEEEE-eC-----------C---CcEEEEECCCceeeeE
Q 024676 161 LSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITT-AD-----------G---SSVKFWDANHFGLVKG 223 (264)
Q Consensus 161 ~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~-~~-----------~---~~i~iwd~~~~~~~~~ 223 (264)
++.+.. +.+++.-+..-+. .+++..+.....+++.+...++.. +. . ..++++|-.+++.+..
T Consensus 687 l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~ 765 (1096)
T KOG1897|consen 687 LASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS 765 (1096)
T ss_pred EEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence 444444 7888876654433 234555666677777764433322 21 1 1277888888887776
Q ss_pred EecCCC--Cc---eeeEcCCCCCEEEEecC----------CCeEEEEEcCc
Q 024676 224 YNMPCN--TE---SASLEPKLGNIFIAGGE----------DMWVHVFDFHT 259 (264)
Q Consensus 224 ~~~~~~--~~---~~~~~~~~~~~~~~gs~----------d~~v~vwd~~~ 259 (264)
+++... .. +..+..+.+.+++.|.. .|.|.+|.+..
T Consensus 766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 665322 22 22344433566666642 46666666554
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.57 E-value=0.41 Score=43.51 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=89.9
Q ss_pred CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec------CCCeEEEE--eCCCCcEEEEeecCCeEEEEEEC
Q 024676 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLW--DALTGDEKHSFEHKHIVRACAFS 111 (264)
Q Consensus 40 d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s------~D~~v~iw--d~~~~~~~~~~~~~~~v~~~~~~ 111 (264)
+|.+...+...-+.+.-..+....+.+.++++++..++... .|..-.|| +.. +.. ..+-.......-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceEC
Confidence 66654443222222222223334677889999998875443 24444444 542 222 222122235566799
Q ss_pred CCCCEEEEeeCC------------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE---EECC
Q 024676 112 EDTHLLLTGGFE------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDAR 176 (264)
Q Consensus 112 ~~~~~l~s~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i---wd~~ 176 (264)
|+++.+.+.... +.+.+.+++.++... ...+.+..+.|++++..++... +++|.+ -...
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~ 479 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTE 479 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCC
Confidence 998777666432 223333444333211 2355799999999888766554 367777 4444
Q ss_pred CCce-e---EEec--CCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676 177 SGKI-V---QTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (264)
Q Consensus 177 ~~~~-~---~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 215 (264)
.|+. + ..+. ....+.++.|.+++.+++...+..-.+|.+
T Consensus 480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred CCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence 5541 1 1121 123357899999998776554443334443
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.48 E-value=0.77 Score=43.07 Aligned_cols=231 Identities=18% Similarity=0.149 Sum_probs=115.4
Q ss_pred EeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc--C------CEEEEEEC----------------CCCcEEEE
Q 024676 23 FYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK--G------AVWSCCLD----------------ANALFSAS 78 (264)
Q Consensus 23 ~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~--~------~V~~v~~~----------------~~~~~l~s 78 (264)
...|+-- +..|..++.++.+.-.|..+|+.+=.+.... . ..+.+++- ..+..++.
T Consensus 187 e~TPlvv-gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 187 QATPLKV-GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred ccCCEEE-CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence 3444433 3466777888888888999887543332111 0 01223331 12346777
Q ss_pred ecCCCeEEEEeCCCCcEEEEeecCCeEE-------------EEEECC--CCCEEEEeeC----------CCcEEEeeCCC
Q 024676 79 GSADFTAKLWDALTGDEKHSFEHKHIVR-------------ACAFSE--DTHLLLTGGF----------EKILRIFDLNR 133 (264)
Q Consensus 79 ~s~D~~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~s~~~----------d~~i~~~d~~~ 133 (264)
++.|+.+.-.|..+|+....+.....|. ...-.| .+..++.|+. ++.|+-+|.++
T Consensus 266 ~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 266 PTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred ecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 8889999999999998887664332221 011122 1345555642 57899999999
Q ss_pred CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC-eEEEEECCCCceeEEecCCCC-EEEEEEcC-CCcEEEEeCCCcE
Q 024676 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETKSP-VTSAEVSR-DGRYITTADGSSV 210 (264)
Q Consensus 134 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~-v~~~~~s~-~~~~l~~~~~~~i 210 (264)
++............. .. .+++..+. .++.+. ..-.+|.+.+..........+ ...-.-.| ++.+ .+.|
T Consensus 346 Gkl~W~~~~g~p~~~-~~--~~~g~~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y-----~~sl 416 (764)
T TIGR03074 346 GALVWAWDPGNPDPT-AP--PAPGETYT-RNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY-----SSSL 416 (764)
T ss_pred CcEeeEEecCCCCcc-cC--CCCCCEec-cCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc-----cceE
Confidence 987766542211110 00 11222222 122111 234456665554332211111 00000011 1111 1233
Q ss_pred EEEECCCceeeeEEe----------cCCCCceeeEcCCCC---CEEEEecCCCeEEEEEcCcceee
Q 024676 211 KFWDANHFGLVKGYN----------MPCNTESASLEPKLG---NIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 211 ~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
.=.|.++++..=.|+ .+..+.-..+...+| ..++.++.+|.+++.|.++|+.+
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 334444444332222 222232222221134 37899999999999999999976
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.11 Score=45.36 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=89.1
Q ss_pred EEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE-------EEEeeCCCcEEEeeCCCCCCC---CeEecc-
Q 024676 75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-------LLTGGFEKILRIFDLNRPDAP---PREVGN- 143 (264)
Q Consensus 75 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~d~~i~~~d~~~~~~~---~~~~~~- 143 (264)
++.++..-..+.=-|++.|+.+..+.....|+.+.+.|+.+. -+.|-.|+.+.-||.+-.... ..+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 345555555677778999998888887666888888876421 223667788888997643221 111111
Q ss_pred CCC-CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC
Q 024676 144 SSG-SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (264)
Q Consensus 144 ~~~-~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 216 (264)
..+ .-.|.+ ...+++ ++.++.+|.||+||- .++ ..-.++ ...+|.-+..+.+|+++++..+.++.+-++.
T Consensus 428 ~~k~nFsc~a-TT~sG~-IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFA-TTESGY-IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccceee-ecCCce-EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 111 223333 233444 556678899999996 443 322333 3578999999999999988878888887764
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.47 E-value=0.63 Score=42.37 Aligned_cols=181 Identities=13% Similarity=0.078 Sum_probs=89.0
Q ss_pred CeeeeEeccCCCCCeEEEEEe------CCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCC-CeEEEE-
Q 024676 18 PVVDLFYSPITPDGFFLVSAS------KDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLW- 88 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s------~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-~~v~iw- 88 (264)
.+...+.+ |||+.++..- .|..-.+|-... +....-..+. ....-.|+||+..+.+.+.. ..+++.
T Consensus 351 ~vsspaiS---pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALS---RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceEC---CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 34444444 5888776655 354445554332 2222223333 24556789998777665432 223332
Q ss_pred ----------eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEE---eeCCCCCCCC---eEecc-CCCCeEEE
Q 024676 89 ----------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI---FDLNRPDAPP---REVGN-SSGSIRTV 151 (264)
Q Consensus 89 ----------d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~---~d~~~~~~~~---~~~~~-~~~~i~~~ 151 (264)
++..++... .....|..+.|+|+++.++... ++.+.+ -....++... ..... .......+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 333333222 2345799999999999887655 466655 2222332111 11222 22234678
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeCCC
Q 024676 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGS 208 (264)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~ 208 (264)
.|.+++..++.+...+..+...++...... .+.. ..++..++-+++ .++++..++
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~iyv~~~~g 560 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-TVYVTDARA 560 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-eEEEEcCCc
Confidence 899766533322222223433344432221 1122 356777777764 333333333
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.45 Score=39.48 Aligned_cols=211 Identities=14% Similarity=0.125 Sum_probs=115.3
Q ss_pred EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe---e---cCCeEE
Q 024676 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF---E---HKHIVR 106 (264)
Q Consensus 33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~---~~~~v~ 106 (264)
++.+--..+.+.-|+..+++. ..+.... .+.++..-.++..|+++. .-+.+++..++..+..+ + .....+
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 444444455566677766642 2333222 223333333343444443 33667777655442222 1 123456
Q ss_pred EEEECCCCCEEEEeeC---------CCcEEEeeCC-CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 107 ACAFSEDTHLLLTGGF---------EKILRIFDLN-RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 107 ~~~~~~~~~~l~s~~~---------d~~i~~~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
.+..+|++.+.++... ...-.+|-+. .+. .......+-.--+.++|+|++..+..+-+..+.|.-|++.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 7888999987775433 0011233332 121 1122222122346789999998888887776888888775
Q ss_pred C--Cce-----eEEec-CCCCEEEEEEcCCCcEEEEe-CC-CcEEEEECCCceeeeEEecC-CCCceeeEcCC-CCCEEE
Q 024676 177 S--GKI-----VQTLE-TKSPVTSAEVSRDGRYITTA-DG-SSVKFWDANHFGLVKGYNMP-CNTESASLEPK-LGNIFI 244 (264)
Q Consensus 177 ~--~~~-----~~~~~-~~~~v~~~~~s~~~~~l~~~-~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 244 (264)
. +.. ..... .....-.++...+|.+.+++ .+ ..|..|+.. ++.+..+..+ ..+.+.+|-.. ...+++
T Consensus 194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 2 211 11111 12334556777788876443 33 389999988 8889999988 55566666532 355666
Q ss_pred EecCC
Q 024676 245 AGGED 249 (264)
Q Consensus 245 ~gs~d 249 (264)
++...
T Consensus 273 Ts~~~ 277 (307)
T COG3386 273 TSARS 277 (307)
T ss_pred EecCC
Confidence 65554
No 380
>PHA02713 hypothetical protein; Provisional
Probab=96.40 E-value=0.17 Score=45.80 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=32.5
Q ss_pred CCeEEEEEeCC------CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC-----eEEEEeCCCC
Q 024676 30 DGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTG 93 (264)
Q Consensus 30 ~g~~l~t~s~d------~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~~ 93 (264)
++...+.|+.+ ..+..||..++++...-......-.......+++..+.|+.++ ++..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 45555666653 2356678877766421111111111111223466656666653 4778887765
No 381
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.28 E-value=0.13 Score=46.49 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=71.9
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe--cCCCeEEEEeeCCCeEEEEECC-----C--
Q 024676 107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--HSDQTILSSCTDSGGVRLWDAR-----S-- 177 (264)
Q Consensus 107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~d~~v~iwd~~-----~-- 177 (264)
.+.-+.-++..+.-+....+.+||.+.+.....+.....+.|..++|. |+++.+++.|.. ..|.++.-. .
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-HHVLLYTQLRYDYTNKG 112 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC-cEEEEEEccchhhhcCC
Confidence 344455566655555567899999987765555544567889999996 567778888776 789998541 1
Q ss_pred --CceeEEec----CCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676 178 --GKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (264)
Q Consensus 178 --~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~ 215 (264)
-..+..+. ...+|....|-++|.+++++ ++.+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 11233331 12478889999999887665 457777764
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.21 E-value=0.018 Score=33.13 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=31.4
Q ss_pred eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
+.....+.......++|. .+++|.|.+||.|.+|++ +++.+
T Consensus 5 ~~~k~l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 5 LGEKNLPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred ecccCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcCc
Confidence 333344555567788885 789999999999999999 67764
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.037 Score=51.89 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=66.0
Q ss_pred EEEEeeCCCeEEEEECCCCce--eEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCCCCceeeE-
Q 024676 160 ILSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASL- 235 (264)
Q Consensus 160 ~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~- 235 (264)
.++.|++.|.+-..|..+.-. .+.-....+|.+++|+.+|++++.|- +|.|.+||.......+.+.....+....+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 455667778999999887422 22223457899999999999987764 68999999999888888877655544333
Q ss_pred ---cCCCCCEEEEecCCCeEEEEE
Q 024676 236 ---EPKLGNIFIAGGEDMWVHVFD 256 (264)
Q Consensus 236 ---~~~~~~~~~~gs~d~~v~vwd 256 (264)
+. .++.+.++-.-|. +|.
T Consensus 181 v~~t~-~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 181 VGRTS-QNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEeC-CCcEEEEccCCCc--eEE
Confidence 23 3456677666554 554
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.04 E-value=0.39 Score=37.74 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=78.3
Q ss_pred CCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc--------CCEEEEEECCCCcEE-EEecCCCeEEEEe--CCCCc-
Q 024676 27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK--------GAVWSCCLDANALFS-ASGSADFTAKLWD--ALTGD- 94 (264)
Q Consensus 27 ~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~--------~~V~~v~~~~~~~~l-~s~s~D~~v~iwd--~~~~~- 94 (264)
..|+|++. .|.+...--+.....+++..-+.+|. +.-+.++|+.+.+.+ ++-+-+.+|.-|| ..+|.
T Consensus 116 vdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~ 194 (310)
T KOG4499|consen 116 VDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL 194 (310)
T ss_pred cCCCCcee-eeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc
Confidence 34678773 44432222233333444444444443 222567898887765 5678888999998 55553
Q ss_pred ----EEEEeec----CCe-EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676 95 ----EKHSFEH----KHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (264)
Q Consensus 95 ----~~~~~~~----~~~-v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 156 (264)
.+..++. .+. .-.++.+.++++.+++-..+++...|..+++...+...+ ...+++++|--.
T Consensus 195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgGk 264 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGGK 264 (310)
T ss_pred cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecCC
Confidence 2333332 111 224555778888888888899999999888876555544 667888888643
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=0.023 Score=44.03 Aligned_cols=102 Identities=10% Similarity=0.113 Sum_probs=65.1
Q ss_pred CeEEEEEeCCCCcEEEeCCC-CceEEee-eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecC-CeEE
Q 024676 31 GFFLVSASKDSSPMLRNGET-GDWIGTF-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHK-HIVR 106 (264)
Q Consensus 31 g~~l~t~s~d~~v~i~~~~~-~~~~~~~-~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~-~~v~ 106 (264)
+..|+.|+.++.+.+|+... |.....+ .+-+.....+.-..++.+..+++.|+.+|.|++.-++.+-.. .|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688999999999987762 1111111 112222233333445668899999999999998877654443 344 4555
Q ss_pred EEEECCCCCEEEEe--eCCCcEEEeeCC
Q 024676 107 ACAFSEDTHLLLTG--GFEKILRIFDLN 132 (264)
Q Consensus 107 ~~~~~~~~~~l~s~--~~d~~i~~~d~~ 132 (264)
.....-.++.+..+ |.|..++.|+++
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 55555566677776 778888888875
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.97 E-value=0.93 Score=41.17 Aligned_cols=148 Identities=17% Similarity=0.118 Sum_probs=73.0
Q ss_pred CCeEEEEEeCC------CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCCC-----eEEEEeCCCCcEE
Q 024676 30 DGFFLVSASKD------SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTGDEK 96 (264)
Q Consensus 30 ~g~~l~t~s~d------~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~ 96 (264)
+|..-++|+.| .++.+||..++++... +.-.+...- ++ .-++..-|.|+.|| ++-.||..+.+=-
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCccc
Confidence 46777888888 3466789998887642 221211111 11 22466678888886 4555665544211
Q ss_pred EEeecCCeEEEEE-ECCCCCEEEEeeCCCc------EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC-
Q 024676 97 HSFEHKHIVRACA-FSEDTHLLLTGGFEKI------LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG- 168 (264)
Q Consensus 97 ~~~~~~~~v~~~~-~~~~~~~l~s~~~d~~------i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~- 168 (264)
...+......... ..-++++.+.|+.++. +..||..+............-.-..++.. ++.+.+.|+.|+
T Consensus 410 ~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGT 487 (571)
T ss_pred ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCC
Confidence 1111111122211 2235677777775544 45667655433211111111111122322 344555555444
Q ss_pred ----eEEEEECCCCcee
Q 024676 169 ----GVRLWDARSGKIV 181 (264)
Q Consensus 169 ----~v~iwd~~~~~~~ 181 (264)
+|..||.++.+-.
T Consensus 488 ~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 488 SALSSVERYDPETNQWT 504 (571)
T ss_pred CccceEEEEcCCCCcee
Confidence 3777898887644
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.93 E-value=0.62 Score=36.67 Aligned_cols=211 Identities=15% Similarity=0.194 Sum_probs=109.6
Q ss_pred eEEEEEeCCCCcEEEeCCCCceE-EeeeCCcCCEEEEEECCCC---cEEEEecCCCeEEEEeCC--CCcEEEEe-e----
Q 024676 32 FFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLDANA---LFSASGSADFTAKLWDAL--TGDEKHSF-E---- 100 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~-~~~~~H~~~V~~v~~~~~~---~~l~s~s~D~~v~iwd~~--~~~~~~~~-~---- 100 (264)
.+|..-=..+.+.-||..+++.. .++++.. +.++.+--.+ .+.+.++..-.+-=||.. .....+++ +
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 34444444555666888776543 3555431 2233332211 344444444344447733 22333332 1
Q ss_pred -cCCeEEEEEECCCCCEEEEeeC-C---------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676 101 -HKHIVRACAFSEDTHLLLTGGF-E---------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (264)
Q Consensus 101 -~~~~v~~~~~~~~~~~l~s~~~-d---------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~ 169 (264)
.+...+.-..+|++++. .|.+ | +.++.|-... ........-+--+.++|..+...+...-+-+-+
T Consensus 106 ~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred HHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceE
Confidence 22345566789999884 4432 1 2233443221 111111112223556787666666666666678
Q ss_pred EEEEE--CCCCc-----eeEEecCC----CC-EEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCCc-eeeE
Q 024676 170 VRLWD--ARSGK-----IVQTLETK----SP-VTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTE-SASL 235 (264)
Q Consensus 170 v~iwd--~~~~~-----~~~~~~~~----~~-v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~ 235 (264)
|.-|| ..+|. .+..++.. .+ .-..++..+|.+. ++=++++|.-.|..+++.+..+.++.... +.+|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 88888 55553 33333221 11 2233445566655 44467899999999999999999986644 4455
Q ss_pred c-CCCCCEEEEecC
Q 024676 236 E-PKLGNIFIAGGE 248 (264)
Q Consensus 236 ~-~~~~~~~~~gs~ 248 (264)
. ++..-+++|+..
T Consensus 262 gGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 262 GGKNLDILYVTTAA 275 (310)
T ss_pred cCCCccEEEEEehh
Confidence 4 323345555544
No 388
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.88 E-value=0.36 Score=42.20 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=80.6
Q ss_pred CcEEEeCCCCceEEeeeCCcCCEEEEEECCCC--------cEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEE----EE
Q 024676 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANA--------LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA----CA 109 (264)
Q Consensus 42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~--------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~----~~ 109 (264)
.+.=-|++-|+.+.+..-|.+.| |.|.|+. ..++.-|..+..||=.-..|..+...+....++. ..
T Consensus 491 kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~ 568 (776)
T COG5167 491 KLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG 568 (776)
T ss_pred cceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccc
Confidence 33345667777777777776653 6777753 3344445444444422223333333333333322 22
Q ss_pred ECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
....+.++++++..|-||+||.- +......++.....|-.+....++.+++++|- ..+-+-|++
T Consensus 569 ~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 569 MTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred ccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 33456689999999999999953 22233445556678888888889999999985 578888875
No 389
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.80 E-value=1 Score=38.21 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=110.9
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-eeeCC----------------cCCEEEEEECCCCcEEEE
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGH----------------KGAVWSCCLDANALFSAS 78 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-~~~~H----------------~~~V~~v~~~~~~~~l~s 78 (264)
...+....|+| +|+++|-.. ++.+.+++..+++.++ +..|- -+.-.++-|+||+++|+.
T Consensus 42 ~~~~~~~~~sP---~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 42 PPKLQDAKWSP---DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp ETTBSEEEE-S---SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred ccccccceeec---CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 34566788886 888877665 5778888877664332 22220 011245779999999876
Q ss_pred ecCC-CeEEE-----------------------------------EeCCCCcEE-EEee-----cCCeEEEEEECCCCCE
Q 024676 79 GSAD-FTAKL-----------------------------------WDALTGDEK-HSFE-----HKHIVRACAFSEDTHL 116 (264)
Q Consensus 79 ~s~D-~~v~i-----------------------------------wd~~~~~~~-~~~~-----~~~~v~~~~~~~~~~~ 116 (264)
...| ..|+. +|+.+++.. .... ....+..+.|.++++.
T Consensus 118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence 5433 22222 222222211 0100 1234677888888873
Q ss_pred EEEe--eCCCc---EEEeeCCCCCCCCeEeccCCCCe---EEEEEe-cCCCeEEEEeeCCC--eEEEEECCCCceeEEec
Q 024676 117 LLTG--GFEKI---LRIFDLNRPDAPPREVGNSSGSI---RTVAWL-HSDQTILSSCTDSG--GVRLWDARSGKIVQTLE 185 (264)
Q Consensus 117 l~s~--~~d~~---i~~~d~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~ 185 (264)
++.. ..+.. +.+.|..++...........+.+ ....+. +++..++.....+| .|.+.+..++.......
T Consensus 198 l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~ 277 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS 277 (353)
T ss_dssp EEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-
T ss_pred EEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc
Confidence 3332 23322 44566655443222221222222 233444 55666655555666 45566777776443334
Q ss_pred CCCCEEE-EEEcCCCcEE--EEeCC--C--cEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEEE-Eec
Q 024676 186 TKSPVTS-AEVSRDGRYI--TTADG--S--SVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFI-AGG 247 (264)
Q Consensus 186 ~~~~v~~-~~~s~~~~~l--~~~~~--~--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~gs 247 (264)
+...|.. +.++++++.+ ++..+ . .+..-++.....++.+....... .+.++|+ +++++ +.+
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd-g~y~v~~~s 347 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD-GKYYVDTYS 347 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT-SSEEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC-CCEEEEEEc
Confidence 4455644 6778887543 33321 2 34444555123334443333333 6777775 55444 444
No 390
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.76 E-value=0.8 Score=36.73 Aligned_cols=195 Identities=11% Similarity=0.152 Sum_probs=106.1
Q ss_pred eeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcEEEEeecC--CeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676 56 TFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (264)
Q Consensus 56 ~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 132 (264)
.+.+-...+..++|.|+. .+++....++.|.-.+. +|+.++.++.. .-.-.+++.-++.++++--.++.+.+++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455545569999999975 46677777888877775 57777776533 346778887777777765557888888874
Q ss_pred CCCCC--Ce-----Eec---cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC---CceeEEe-----c----CCCCE
Q 024676 133 RPDAP--PR-----EVG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTL-----E----TKSPV 190 (264)
Q Consensus 133 ~~~~~--~~-----~~~---~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~~~~-----~----~~~~v 190 (264)
..... .. ..+ ..+.....++|.+.+..++++. +..-.+|+.++. ...+... . .-..+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 32211 11 111 1334578899999888777664 445666776653 2222111 1 12357
Q ss_pred EEEEEcCCC-cEE-EEeCCCcEEEEECCCceeeeEEecCC----------CCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676 191 TSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVF 255 (264)
Q Consensus 191 ~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~v~vw 255 (264)
..+.++|.. .++ .+..++.+..+| ..++.+..+.... ++.-+++.++ |.++++. +-...++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~-G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD-GNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC-CCEEEEc-CCceEEEe
Confidence 888999874 444 444567888899 6777777776543 3445667764 6655544 55555554
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.064 Score=50.40 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCcEEEeCCCCceEEee-eC--CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCe---
Q 024676 32 FFLVSASKDSSPMLRNGETGDWIGTF-EG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHI--- 104 (264)
Q Consensus 32 ~~l~t~s~d~~v~i~~~~~~~~~~~~-~~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~--- 104 (264)
-.++.|+.-|.+...|...+ ++.+ .+ -.++|.+++|+.+|.+++.|=.+|.|.+||+..+..++.+. +..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 35677777777777665543 1111 11 35799999999999999999999999999999987766653 4444
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEee
Q 024676 105 VRACAFSEDTHLLLTGGFEKILRIFD 130 (264)
Q Consensus 105 v~~~~~~~~~~~l~s~~~d~~i~~~d 130 (264)
|..+.+..++..++++...|. +|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEE
Confidence 444445555557777666664 454
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.71 E-value=0.64 Score=41.38 Aligned_cols=146 Identities=17% Similarity=0.220 Sum_probs=81.9
Q ss_pred CCEEEEEECCCCcEEEEec--CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC----CCEEEEeeCCCcEEEeeCCC--
Q 024676 62 GAVWSCCLDANALFSASGS--ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED----THLLLTGGFEKILRIFDLNR-- 133 (264)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~d~~i~~~d~~~-- 133 (264)
.+|+.++|......+.|.- .+|.+++=| ...+-.| ..|.++.|.|- ..-+++.--.+.+.+|.+--
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 4889999985444445542 233333322 1223333 34889999995 34566777788999998741
Q ss_pred CCCCCeEeccCCCC--------eEEEEEecCCCeEEEEeeCCCeEE-EEECCC--CceeEEecCCCCEEEEEEcCCCcEE
Q 024676 134 PDAPPREVGNSSGS--------IRTVAWLHSDQTILSSCTDSGGVR-LWDARS--GKIVQTLETKSPVTSAEVSRDGRYI 202 (264)
Q Consensus 134 ~~~~~~~~~~~~~~--------i~~~~~~~~~~~~~~~~~~d~~v~-iwd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l 202 (264)
.+.. ........+ -..+.|.|.... ++.-.. ..+. +.+.+. .+....++....|.+.+|.+||+.|
T Consensus 94 ~e~~-K~l~sQtcEi~e~~pvLpQGCVWHPk~~i-L~VLT~-~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 94 TERN-KLLMSQTCEIREPFPVLPQGCVWHPKKAI-LTVLTA-RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cccc-cceeeeeeeccCCcccCCCcccccCCCce-EEEEec-CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 1110 011011111 123457665544 433333 2243 345443 3444566777889999999999877
Q ss_pred EEeCCCc--EEEEECC
Q 024676 203 TTADGSS--VKFWDAN 216 (264)
Q Consensus 203 ~~~~~~~--i~iwd~~ 216 (264)
+.+-+.. -.|||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 6655444 4689864
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.66 E-value=0.024 Score=43.94 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=49.4
Q ss_pred cCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc-CCEEEEEECCCCcEEEEe--cCCCeEEEEeCCC
Q 024676 26 PITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASG--SADFTAKLWDALT 92 (264)
Q Consensus 26 ~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~-~~V~~v~~~~~~~~l~s~--s~D~~v~iwd~~~ 92 (264)
|...++.+..++..|+.+|-|+...++.+.....|. .++........+.+++.+ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 444556688999999999999999888887777787 566555555556666666 7777777777654
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.65 E-value=1 Score=37.21 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=70.9
Q ss_pred CCCeeeeEeccCCCCCeEEEEEeCCCCcE-EEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC-CCC
Q 024676 16 SRPVVDLFYSPITPDGFFLVSASKDSSPM-LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-LTG 93 (264)
Q Consensus 16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~-i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~-~~~ 93 (264)
...+..+... +||++++++ ..|.+. -|+.-...+...-+.-...|.++.|.+++.+.+.+ +.+.+++=+. ...
T Consensus 144 ~gs~~~~~r~---~dG~~vavs-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 144 SGSINDITRS---SDGRYVAVS-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ---EEEEEE----TTS-EEEEE-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cceeEeEEEC---CCCcEEEEE-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 3556666555 489887665 455554 46654444444444456789999999998765543 7888888762 222
Q ss_pred cEEEE--ee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec---cCCCCeEEEEEecCCCeEEEEee
Q 024676 94 DEKHS--FE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 94 ~~~~~--~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
+.... .+ ....+..++|.+++.+.++|+....++- .+.++ ..+... .....+..+.|.+++.-+++ +
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S--~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G- 293 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS--TDGGK-TWQKDRVGENVPSNLYRIVFVNPDKGFVL-G- 293 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE--SSTTS-S-EE-GGGTTSSS---EEEEEETTEEEEE---
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe--CCCCc-cceECccccCCCCceEEEEEcCCCceEEE-C-
Confidence 21111 11 1224788999999888776665433332 22222 233221 23445777888766544443 3
Q ss_pred CCCeEEEE
Q 024676 166 DSGGVRLW 173 (264)
Q Consensus 166 ~d~~v~iw 173 (264)
.+|.|.=|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 45766543
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.60 E-value=2.1 Score=40.48 Aligned_cols=236 Identities=12% Similarity=0.132 Sum_probs=111.9
Q ss_pred eEeccCCCCCeEEEEEeCCCCcEEE--eCCCCceEEeeeC--CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676 22 LFYSPITPDGFFLVSASKDSSPMLR--NGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (264)
Q Consensus 22 ~~~~~~~~~g~~l~t~s~d~~v~i~--~~~~~~~~~~~~~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 97 (264)
|-+.....|+.+|.++..||.+..+ |..+|.+...=+. -..|+.--.|+..+..-+-+..|+-..+|-.+..-...
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~s 665 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYS 665 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEe
Confidence 4444444568899999999998776 4455543211111 12455445666655443344456666666643332222
Q ss_pred EeecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee----------
Q 024676 98 SFEHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT---------- 165 (264)
Q Consensus 98 ~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------- 165 (264)
.+..+.--..+.++.+ ...|+++ ..+.+++.-++.-+....+.-+.......+++.+....+.+.+.
T Consensus 666 pls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 666 PLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYG 744 (1096)
T ss_pred ccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcC
Confidence 2221111112223221 1234433 33455555543322221111122223334444332222222111
Q ss_pred CC---CeEEEEECCCCceeEEecCC--C---CEEEEEEcCC-CcEEEEe-----------CCCcEEEEECCCc---eeee
Q 024676 166 DS---GGVRLWDARSGKIVQTLETK--S---PVTSAEVSRD-GRYITTA-----------DGSSVKFWDANHF---GLVK 222 (264)
Q Consensus 166 ~d---~~v~iwd~~~~~~~~~~~~~--~---~v~~~~~s~~-~~~l~~~-----------~~~~i~iwd~~~~---~~~~ 222 (264)
.. ..++++|..|.+.++..+.. . .+.++.|.-| +.+++.+ ..|.|.++..... +.+.
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence 00 13788899998877655432 2 3555557766 5555443 1245666665542 2233
Q ss_pred EEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 223 GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
.......+.+.... .|+++|+ -+..|++|+..+.++
T Consensus 825 e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 825 ETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERE 860 (1096)
T ss_pred eeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccce
Confidence 33333333333333 3665544 456799999987744
No 396
>PHA03098 kelch-like protein; Provisional
Probab=95.59 E-value=1 Score=40.48 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=80.3
Q ss_pred CCcEEEEecCCC------eEEEEeCCCCcEEEEeecC--CeEEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCCC
Q 024676 72 NALFSASGSADF------TAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPP 138 (264)
Q Consensus 72 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~ 138 (264)
++...+.|+.++ .+..||..+..-....... ..-..+ ..-++++.+.||.+ ..+..||..+.....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGV-TVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceE-EEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 455556665442 4666777665421111111 111111 12256677777765 235567766543221
Q ss_pred eEeccCCCCeEEEEEecCCCeEEEEeeC-C----CeEEEEECCCCceeEEecCCCC--EEEEEEcCCCcEE-EEeCC---
Q 024676 139 REVGNSSGSIRTVAWLHSDQTILSSCTD-S----GGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYI-TTADG--- 207 (264)
Q Consensus 139 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~-d----~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l-~~~~~--- 207 (264)
....+....-.+++.. ++..++.+|.. + +.+..||+.+++-...-....+ -.+++. .+++++ .++.+
T Consensus 373 ~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 373 EPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYID 450 (534)
T ss_pred CCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCCC
Confidence 1111111111122222 23333444321 1 3578899887653221111111 112222 244443 44321
Q ss_pred -----CcEEEEECCCce--eeeEEecCCCCceeeEcCCCCCEEEEecCC-----CeEEEEEcCcc
Q 024676 208 -----SSVKFWDANHFG--LVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTG 260 (264)
Q Consensus 208 -----~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~v~vwd~~~g 260 (264)
..+..||..+.+ .+.....+......... ++.+++.||.+ ..+.+||..+.
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 137788887543 22211111111112221 47788888765 47888887764
No 397
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.47 E-value=1.4 Score=37.52 Aligned_cols=236 Identities=18% Similarity=0.233 Sum_probs=108.1
Q ss_pred eEecc--CCCCC-eEEEEEeCCCCcEEE--eCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676 22 LFYSP--ITPDG-FFLVSASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (264)
Q Consensus 22 ~~~~~--~~~~g-~~l~t~s~d~~v~i~--~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 96 (264)
+.|.. .++|| ++|..+..|+.-.+| |+.+++..+--.+-........+++++..++--.....++--|+.+.+..
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 44443 44678 566666668877666 67777654332321122223456777777655555568888999998766
Q ss_pred EEeecC-CeEEEEEE--CCCCCEEEEee---CCC-------------------cEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676 97 HSFEHK-HIVRACAF--SEDTHLLLTGG---FEK-------------------ILRIFDLNRPDAPPREVGNSSGSIRTV 151 (264)
Q Consensus 97 ~~~~~~-~~v~~~~~--~~~~~~l~s~~---~d~-------------------~i~~~d~~~~~~~~~~~~~~~~~i~~~ 151 (264)
..+..+ ..+-...| +.++..++-.- .|. .|...|+.+++. ..+......+..+
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDTDWLGHV 193 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEESS-EEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecCccccCc
Confidence 666533 33322333 33454443211 111 133345555542 2333345567888
Q ss_pred EEecCCCeEEEEeeCC---C-eEEEEECCC-CceeEEecCCCC---EEEEEEcCCCcEEEE---eC---CCcEEEEECCC
Q 024676 152 AWLHSDQTILSSCTDS---G-GVRLWDARS-GKIVQTLETKSP---VTSAEVSRDGRYITT---AD---GSSVKFWDANH 217 (264)
Q Consensus 152 ~~~~~~~~~~~~~~~d---~-~v~iwd~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~~---~~---~~~i~iwd~~~ 217 (264)
.++|.++.+++-|.+- . .-|||=+++ +.....+..+.+ +.-=.|.|||..+.- .. +..|.-+|..+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 8999888888877641 1 137786543 333333322222 223357899865432 12 23566678887
Q ss_pred ceeeeEEecCCCCceee-EcCCCCCEEEEecCCC----------------eEEEEEcCccee
Q 024676 218 FGLVKGYNMPCNTESAS-LEPKLGNIFIAGGEDM----------------WVHVFDFHTGEQ 262 (264)
Q Consensus 218 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gs~d~----------------~v~vwd~~~g~~ 262 (264)
++.-.....+ .+.- ..+.++++||.=|.|. .++++++..++.
T Consensus 274 ~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 274 GERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp --EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred CCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 7543323332 1222 2233577777644442 677788776653
No 398
>PHA02790 Kelch-like protein; Provisional
Probab=95.46 E-value=1.4 Score=39.24 Aligned_cols=144 Identities=9% Similarity=0.014 Sum_probs=66.4
Q ss_pred CCeEEEEEeCCC-----CcEEEeCCCCceEE--eeeCCcCCEEEEEECCCCcEEEEecCC--CeEEEEeCCCCcEEEEee
Q 024676 30 DGFFLVSASKDS-----SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKHSFE 100 (264)
Q Consensus 30 ~g~~l~t~s~d~-----~v~i~~~~~~~~~~--~~~~H~~~V~~v~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~ 100 (264)
++...+.|+.++ ++..||..++++.. .+...+... +++ ..++...+.|+.+ .++..||..++.=....+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777653 35668888887653 222111111 122 2356655666654 357778865542111111
Q ss_pred cCCeE-EEEEECCCCCEEEEeeCCC---cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 101 HKHIV-RACAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 101 ~~~~v-~~~~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
...+. ......-++++.+.|+.++ .+-.||.++.+..........-.-.+++ .- ++.+.+.| |.+.+||.+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~-~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VF-GRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EE-CCEEEEEC---CceEEecCC
Confidence 11111 1111223566667777543 3556776554322111101010111222 12 34454444 457789998
Q ss_pred CCce
Q 024676 177 SGKI 180 (264)
Q Consensus 177 ~~~~ 180 (264)
+++-
T Consensus 424 ~~~W 427 (480)
T PHA02790 424 SNTW 427 (480)
T ss_pred CCcE
Confidence 7754
No 399
>PHA03098 kelch-like protein; Provisional
Probab=95.43 E-value=1.3 Score=39.93 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCeEEEEEeCCC------CcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCCcEE
Q 024676 30 DGFFLVSASKDS------SPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGDEK 96 (264)
Q Consensus 30 ~g~~l~t~s~d~------~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~ 96 (264)
++...+.|+.++ .+..||..++++... +...+.....+. .++...+.|+.+ ..+..||..++.=.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 345556666543 456688888776432 111111111122 245555666655 34667777655311
Q ss_pred EE--eecCCeEEEEEECCCCCEEEEeeCC------CcEEEeeCCCCC
Q 024676 97 HS--FEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPD 135 (264)
Q Consensus 97 ~~--~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~~~ 135 (264)
.. .+....-.++ ..-++++.+.|+.+ +.+..||..+.+
T Consensus 372 ~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 372 EEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 11 1111111111 12356666667632 346778876544
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.22 E-value=0.08 Score=30.40 Aligned_cols=29 Identities=14% Similarity=0.023 Sum_probs=27.2
Q ss_pred CCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676 62 GAVWSCCLDANALFSASGSADFTAKLWDA 90 (264)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~ 90 (264)
..|..++|+|+..++|.+..||.|.++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 56889999999999999999999999998
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.09 E-value=2.4 Score=38.71 Aligned_cols=106 Identities=18% Similarity=0.335 Sum_probs=66.9
Q ss_pred EECCCCcEEEEecCCCeEEEEeCCCCcEEE--EeecCCeEEEEEE--CCCCCEEEEeeCCCcEEEeeCC-------CCCC
Q 024676 68 CLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLN-------RPDA 136 (264)
Q Consensus 68 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~~~d~~-------~~~~ 136 (264)
.-+.-++..+.-+....+.|||...+.... .+....+|..+.| .|+++.+++.+..+.|.+|.-. .+..
T Consensus 36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 334445544445556689999998876333 3345778999888 5588999999999999998531 1111
Q ss_pred -CCeE--eccC-CCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676 137 -PPRE--VGNS-SGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (264)
Q Consensus 137 -~~~~--~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~ 176 (264)
.... +..+ ..+|....|.+++ .++++ +. +++.|+|-.
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~-sG-Nqlfv~dk~ 156 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLKDG-TLVVG-SG-NQLFVFDKW 156 (631)
T ss_pred ceeEEEEeecCCCCCccceeEecCC-eEEEE-eC-CEEEEECCC
Confidence 1111 1222 3567888898755 44443 33 689999853
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.99 E-value=2.2 Score=36.97 Aligned_cols=174 Identities=19% Similarity=0.262 Sum_probs=81.1
Q ss_pred CCCeEEEEE--eCCC----CcEEEeCCCCceEEeeeCCcC---CEEEEEECCCCcEEEEecC------------------
Q 024676 29 PDGFFLVSA--SKDS----SPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSA------------------ 81 (264)
Q Consensus 29 ~~g~~l~t~--s~d~----~v~i~~~~~~~~~~~~~~H~~---~V~~v~~~~~~~~l~s~s~------------------ 81 (264)
|+|+.++++ ..+| -+.+.|.++.+.+...+...+ --+.+-+.|....++|...
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 578777776 2222 355667776666555543222 2244566777777776632
Q ss_pred --CCeEEEEeCCCCcEEEEeecCC---eEEEEEE--CCCCCEEEEee-CCCcE-EEeeCCCCCCCCe---Eecc------
Q 024676 82 --DFTAKLWDALTGDEKHSFEHKH---IVRACAF--SEDTHLLLTGG-FEKIL-RIFDLNRPDAPPR---EVGN------ 143 (264)
Q Consensus 82 --D~~v~iwd~~~~~~~~~~~~~~---~v~~~~~--~~~~~~l~s~~-~d~~i-~~~d~~~~~~~~~---~~~~------ 143 (264)
-.++.+||..+.+.++++.... ...-+.| +|....-++++ ....| ++|.-+.++...+ .+..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 3689999999999988886432 2333333 55555544443 23333 3333222221111 1111
Q ss_pred -----------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC---ceeEEecC-----------------CCCEEE
Q 024676 144 -----------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLET-----------------KSPVTS 192 (264)
Q Consensus 144 -----------~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~-----------------~~~v~~ 192 (264)
...-++.+..+-++.++.+++--+|.||-||+..- +.+.++.. ....+-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 02346777888899999999999999999998752 22222211 123467
Q ss_pred EEEcCCCcEE
Q 024676 193 AEVSRDGRYI 202 (264)
Q Consensus 193 ~~~s~~~~~l 202 (264)
++.|.||+.+
T Consensus 379 vqlS~DGkRl 388 (461)
T PF05694_consen 379 VQLSLDGKRL 388 (461)
T ss_dssp EEE-TTSSEE
T ss_pred EEEccCCeEE
Confidence 8899999754
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.92 E-value=1.6 Score=35.17 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=107.7
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCC--CcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~--~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~ 94 (264)
..-++.|.+ +|.++-+.+.-| .++.+|..+|+..+...- .+---..++...|..+..| -+++..-+||..+.+
T Consensus 46 FTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-Wk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 46 FTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-WKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-SSSSEEEEEETTTTE
T ss_pred cCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-ecCCeEEEEccccce
Confidence 344688842 777878887777 467789999987654332 1222234555555555554 678899999999988
Q ss_pred EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe----ccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676 95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (264)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~d~~v 170 (264)
.+.+++....=..++. +++.|+.......+..+|..+-+...... +..-..++.+.|. ++.+.+=.-....|
T Consensus 122 ~~~~~~y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I 197 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEEE-SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEE
T ss_pred EEEEEecCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeE
Confidence 8888877766677763 34455555556778888865433221111 1122345666665 45566655555678
Q ss_pred EEEECCCCceeEEecC----------------CCCEEEEEEcCCC-cEEEEe
Q 024676 171 RLWDARSGKIVQTLET----------------KSPVTSAEVSRDG-RYITTA 205 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~----------------~~~v~~~~~s~~~-~~l~~~ 205 (264)
-.-|..+|+++..+.. ..-.+.+++.|.. ++++++
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8889999998876521 1247899998876 455665
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=94.83 E-value=2.6 Score=37.50 Aligned_cols=182 Identities=10% Similarity=0.040 Sum_probs=81.8
Q ss_pred CCcEEEEecCCC-----eEEEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCC--CcEEEeeCCCCCCCCeEec
Q 024676 72 NALFSASGSADF-----TAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVG 142 (264)
Q Consensus 72 ~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~ 142 (264)
++...+.|+.++ ++..||..++.-....+ ....-..+ ..-++++.+.|+.+ ..+..||..+.+. ....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W--~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAW--VNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeE--EECC
Confidence 345556666543 45567766543111111 11111111 12356666777754 3466677654322 2211
Q ss_pred cCCCCe--EEEEEecCCCeEEEEeeCC--CeEEEEECCCCceeEEecCCCCE-EEEEEcCCCcEEEEeCCCcEEEEECCC
Q 024676 143 NSSGSI--RTVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSPV-TSAEVSRDGRYITTADGSSVKFWDANH 217 (264)
Q Consensus 143 ~~~~~i--~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~i~iwd~~~ 217 (264)
+-..+. .+++.. ++..++++|.+. ..+..||.++.+-...-....+. ......-++++.+.+ +.+.+||.++
T Consensus 348 ~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~ 424 (480)
T PHA02790 348 SLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESS 424 (480)
T ss_pred CCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCC
Confidence 111111 122222 233334444321 34778898876533211111111 112223456655544 3567788765
Q ss_pred c--eeeeEEecCCCCceeeEcCCCCCEEEEecCC-----CeEEEEEcCcce
Q 024676 218 F--GLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGE 261 (264)
Q Consensus 218 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~v~vwd~~~g~ 261 (264)
. +.+.....+......+.. ++++++.||.+ ..|.+||..+++
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 3 222211111111122222 47888998864 468889887654
No 405
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.52 E-value=1.7 Score=33.73 Aligned_cols=110 Identities=12% Similarity=0.192 Sum_probs=64.2
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC--C---eEEEE---ECCC-
Q 024676 107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--G---GVRLW---DARS- 177 (264)
Q Consensus 107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~---~v~iw---d~~~- 177 (264)
.++.+..+.++++ ....+|-+|++...+.........-+.+..+.++..|+++++-=... . .+|+| +...
T Consensus 22 ~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3334444444443 56688999999855554444445568899999998887766532211 2 56775 2220
Q ss_pred -Ccee-----------------------EEecCCCCEEEEEEcCC-CcEEEEeCCCcEEEEECCCc
Q 024676 178 -GKIV-----------------------QTLETKSPVTSAEVSRD-GRYITTADGSSVKFWDANHF 218 (264)
Q Consensus 178 -~~~~-----------------------~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~ 218 (264)
.+.+ -++....++.+++..|- |++++++ ++.+.+|.+...
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1111 11222346777887775 5666555 568888887544
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.52 E-value=0.36 Score=37.94 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=40.5
Q ss_pred CCeEEEEeeCCCeEEEEECCCCceeEEe-------c--------CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC
Q 024676 157 DQTILSSCTDSGGVRLWDARSGKIVQTL-------E--------TKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~-------~--------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 216 (264)
+.+ +.+...+|.+++||+++++++..- . ....|.++.++.+|.-++.-.++....|+..
T Consensus 22 ~~~-Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSY-LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCE-EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 444 445566799999999998865432 1 2245788888888876666555677777753
No 407
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.12 E-value=0.36 Score=26.50 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=28.1
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEE
Q 024676 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEV 195 (264)
Q Consensus 155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~ 195 (264)
|+++.++++...++.|.++|..+++.+..+........+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 34566777777778999999998888777665433334443
No 408
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.08 E-value=4.4 Score=37.13 Aligned_cols=160 Identities=9% Similarity=0.081 Sum_probs=84.4
Q ss_pred cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc--EEEEe--ecCC------eEEEEEECCCCCEEEEeeC-C---CcE
Q 024676 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSF--EHKH------IVRACAFSEDTHLLLTGGF-E---KIL 126 (264)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~--~~~~------~v~~~~~~~~~~~l~s~~~-d---~~i 126 (264)
.+.|..+.|.+++..++..-.+|.|++||...+. ..... .+.. .|..........++++-+. . -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 4678889999999999999999999999983221 11111 1111 1222211122345554443 2 236
Q ss_pred EEeeCCCCCCCCeEec-----cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-------CCEEEEE
Q 024676 127 RIFDLNRPDAPPREVG-----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAE 194 (264)
Q Consensus 127 ~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~v~~~~ 194 (264)
|++.+........+.. .....-..+++. .+.+..- .+++|.+|++...+...++... ..+.++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 6777722211122221 111112223333 3433322 4579999999988776665432 1222332
Q ss_pred EcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676 195 VSRDGRYITTADGSSVKFWDANHFGLVKGYN 225 (264)
Q Consensus 195 ~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 225 (264)
+|....+.-+.+..|.+.|+.....+..+.
T Consensus 285 -~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 -PPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -cCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 233334444446799999997655555444
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.94 E-value=3.1 Score=34.44 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=81.0
Q ss_pred ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC-cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (264)
Q Consensus 52 ~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 130 (264)
.+.....+-.+.+..+.-++|+.+++.+++-...+-||-... -..........+..+.|.|++.+.+.+ ..+.++.=+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 355555555678888888999999988888778888885432 233333346789999999998876654 778888776
Q ss_pred CC-CCC-CCCeEecc-CCCC-eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec----CCCCEEEEEEcCCCcEE
Q 024676 131 LN-RPD-APPREVGN-SSGS-IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYI 202 (264)
Q Consensus 131 ~~-~~~-~~~~~~~~-~~~~-i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l 202 (264)
.. ..+ ........ ..+. +..++|.+++.. .+++.. |. -+.....|+-=.... .......+.|.++.+-+
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~-wa~gg~-G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI-WAVGGS-GT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-E-EEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCE-EEEeCC-cc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 21 111 00001111 1222 677888876554 444443 43 344556665322222 23457778887666777
Q ss_pred EEeCCCcEEEE
Q 024676 203 TTADGSSVKFW 213 (264)
Q Consensus 203 ~~~~~~~i~iw 213 (264)
+.++++.|--|
T Consensus 291 ~lG~~G~ll~~ 301 (302)
T PF14870_consen 291 VLGQDGVLLRY 301 (302)
T ss_dssp EE-STTEEEEE
T ss_pred EECCCcEEEEe
Confidence 77777765433
No 410
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=5.7 Score=38.70 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCCCEEEEecCCCeEEEEEcCccee
Q 024676 238 KLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 238 ~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
..++.++++.+|+.+..||++.|+.
T Consensus 244 ~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 244 RDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cCCceEEEEEecCCEEeeecCCCce
Confidence 3588999999999999999998754
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.25 E-value=0.59 Score=26.15 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCC
Q 024676 146 GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 146 ~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~ 178 (264)
|.+.++.|+|... .+|+-.-+.+.|.|+|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4678888986554 46666566689999999953
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.12 E-value=1.5 Score=40.83 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=39.8
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC---------CCce-E--Ee-------e-eCCcCCEEEEEECCC---Cc
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---------TGDW-I--GT-------F-EGHKGAVWSCCLDAN---AL 74 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~---------~~~~-~--~~-------~-~~H~~~V~~v~~~~~---~~ 74 (264)
.|..|..+| +|++|+..+..+.+.+.-.. .|+. + ++ | ..+...|..+.|+|. +.
T Consensus 86 ~v~~i~~n~---~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 86 EVHQISLNP---TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eEEEEEECC---CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 466677774 88888888887765553322 1110 0 11 1 123445666677664 35
Q ss_pred EEEEecCCCeEEEEeC
Q 024676 75 FSASGSADFTAKLWDA 90 (264)
Q Consensus 75 ~l~s~s~D~~v~iwd~ 90 (264)
+|+.-..|+++|+||+
T Consensus 163 ~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDI 178 (717)
T ss_pred eEEEEecCCEEEEEec
Confidence 5555556677777775
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.88 E-value=3.4 Score=32.18 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=36.0
Q ss_pred CeEEEEeeCCCeEEEEECCC--CceeEEecCCCCEEEEEEcCCCcEEEEeC
Q 024676 158 QTILSSCTDSGGVRLWDARS--GKIVQTLETKSPVTSAEVSRDGRYITTAD 206 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 206 (264)
+.++++.+. ..|.+||+.+ .+.+..+..-+.|..+.++..|.|+++-+
T Consensus 29 d~Lfva~~g-~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASG-CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCC-CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence 455554444 7899999984 34566777778899999999999998753
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.82 E-value=0.75 Score=39.76 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=51.2
Q ss_pred CCEEEEEEcCCCcEEEEeCC-CcEEEEECCCceeeeEEecC----CCCceeeEc--------------CCCC-CEEEEec
Q 024676 188 SPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMP----CNTESASLE--------------PKLG-NIFIAGG 247 (264)
Q Consensus 188 ~~v~~~~~s~~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~-~~~~~gs 247 (264)
..+.++..+|++++++..++ |+|.++|+.++..++.++.- |........ ++.. -+++.+.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 34788999999999888765 89999999988777665431 110000000 0001 1455677
Q ss_pred CCCeEEEEEcCcceee
Q 024676 248 EDMWVHVFDFHTGEQI 263 (264)
Q Consensus 248 ~d~~v~vwd~~~g~~i 263 (264)
.=|.|-||.+.+|..+
T Consensus 388 rRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRV 403 (415)
T ss_pred cCCeEEEEecCCCCEE
Confidence 7899999999998765
No 415
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.65 E-value=6.4 Score=34.26 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=87.9
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-------eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-------TFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-------~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd 89 (264)
+.|.++.|.. ...|+.-..||.++++|.. |+... ...-..+.+....+..+|-.+.|++. .+.+-+
T Consensus 81 ~~iv~~~wt~----~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~--~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTD----DEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNN--RFYVVN 153 (410)
T ss_pred CCEEEEEECC----CCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCC--eEEEEe
Confidence 5777888873 3466788899999999986 44311 11112233333344446655555433 232222
Q ss_pred CCCCc-EEEEe-e--------cCCe-EE-EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676 90 ALTGD-EKHSF-E--------HKHI-VR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (264)
Q Consensus 90 ~~~~~-~~~~~-~--------~~~~-v~-~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (264)
-.... ..... + +..+ .. ...++.+....+....++.+.+.+-... ... ...+++..++.+|++
T Consensus 154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----~~i-~~~~~i~~iavSpng 228 (410)
T PF04841_consen 154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----KQI-DSDGPIIKIAVSPNG 228 (410)
T ss_pred CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----ccc-cCCCCeEEEEECCCC
Confidence 11111 11111 0 0000 00 0123334444444445555554432211 011 234678899988877
Q ss_pred CeEEEEeeCCCeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcE
Q 024676 158 QTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRY 201 (264)
Q Consensus 158 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~ 201 (264)
+. ++.-.++|.+.+.+..-.+.+..+... .+...+.|+.+...
T Consensus 229 ~~-iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 229 KF-IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CE-EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 65 455567789999877655555555433 45667778766433
No 416
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.50 E-value=5.5 Score=33.14 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=70.6
Q ss_pred EEEEEECCCCcEEEEecC------C---CeEEEEeCC-CCcEEEEeec-CCeEEEEEECCCCCEEEEeeC-CCcEEEeeC
Q 024676 64 VWSCCLDANALFSASGSA------D---FTAKLWDAL-TGDEKHSFEH-KHIVRACAFSEDTHLLLTGGF-EKILRIFDL 131 (264)
Q Consensus 64 V~~v~~~~~~~~l~s~s~------D---~~v~iwd~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~ 131 (264)
-+.+...|+|.+-++... + ..-.+|.+. .+.....+.. -..-+.++|+|+++.|+.+-. .+.|.-|++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 345667888877554333 1 122445444 3333333322 233578999999988887754 477777776
Q ss_pred CC--CCCC----CeEeccCCCCeEEEEEecCCCeEEEEeeCCC-eEEEEECCCCceeEEecCC-CCEEEEEEcC
Q 024676 132 NR--PDAP----PREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETK-SPVTSAEVSR 197 (264)
Q Consensus 132 ~~--~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~ 197 (264)
.. +... ........+..-.++.-. ++.+-+++..+| .|..|+.. ++.+..+... ..+.+++|-.
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 52 1111 111111223333333222 344443333333 89999998 8887777654 4566666643
No 417
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.38 E-value=0.85 Score=41.21 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCEEEEEECC----CCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676 62 GAVWSCCLDA----NALFSASGSADFTAKLWDALTGDEKHSF 99 (264)
Q Consensus 62 ~~V~~v~~~~----~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 99 (264)
+.+.+++++. +..++++-+.|+++|+||+.++.++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4456666766 7789999999999999999999886554
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.94 E-value=0.84 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=25.2
Q ss_pred CCEEEEEECCCC---cEEEEecCCCeEEEEeCCC
Q 024676 62 GAVWSCCLDANA---LFSASGSADFTAKLWDALT 92 (264)
Q Consensus 62 ~~V~~v~~~~~~---~~l~s~s~D~~v~iwd~~~ 92 (264)
++|+++.|+|.. .+|+-+=.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999754 4777777778999999885
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.89 E-value=0.19 Score=46.73 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=51.0
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEE-----------EECCCCcEEEEecCCCeEEE
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC-----------CLDANALFSASGSADFTAKL 87 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v-----------~~~~~~~~l~s~s~D~~v~i 87 (264)
+.-|.|.|+.+..-++..+-.++++++-..+.-. ...|.+|...+..+ .++|||+.++.++.||.+++
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 3567788877777788888888888885543321 13355565544332 36899999999999999999
Q ss_pred EeCC
Q 024676 88 WDAL 91 (264)
Q Consensus 88 wd~~ 91 (264)
|-+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 9763
No 420
>PRK10115 protease 2; Provisional
Probab=91.77 E-value=11 Score=35.18 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=107.0
Q ss_pred eeeeEeccCCCCCeEEEEEeC-CC----CcEEEeCCCCceEE-eeeCCcCCEEEEEECCCCcEE-EEec-----CCCeEE
Q 024676 19 VVDLFYSPITPDGFFLVSASK-DS----SPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFS-ASGS-----ADFTAK 86 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~-d~----~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~~~~~l-~s~s-----~D~~v~ 86 (264)
+..+.++ |||++|+-+.. +| .+++.++.+|+.+. .+.+ .-..++|.+|+..| ++.- +...|.
T Consensus 129 l~~~~~S---pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 129 LGGMAIT---PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EeEEEEC---CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 4445554 58887766532 22 36677888776432 2222 12568999888655 4432 224677
Q ss_pred EEeCCCC--cEEEEeec-CCeEE-EEEECCCCCEEEEee---CCCcEEEeeCCCCCCCCe-EeccCCCCeEEEEEecCCC
Q 024676 87 LWDALTG--DEKHSFEH-KHIVR-ACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQ 158 (264)
Q Consensus 87 iwd~~~~--~~~~~~~~-~~~v~-~~~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~ 158 (264)
.+++.++ +....++. ..... ....+.++++++..+ .++.+.+++.+....... ......+....+. ...+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 7888887 33333432 22222 233344777665433 345688888532211112 2222222222222 22233
Q ss_pred eEEEEeeCCC--eEEEEECC-CCceeEEecC--CCCEEEEEEcCCCcEEEEeCCC--cEEEEECCCceeeeEEecCCC--
Q 024676 159 TILSSCTDSG--GVRLWDAR-SGKIVQTLET--KSPVTSAEVSRDGRYITTADGS--SVKFWDANHFGLVKGYNMPCN-- 229 (264)
Q Consensus 159 ~~~~~~~~d~--~v~iwd~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~--~i~iwd~~~~~~~~~~~~~~~-- 229 (264)
.++.+..+.. .|-..++. .++....+.. ...+..+.++.+..+++...++ .+.++|.... .+..+.....
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 3343322222 33334544 2322222233 2357777777443333334444 4556665433 2333332111
Q ss_pred CceeeEc--CCCCCEEEEecC---CCeEEEEEcCcce
Q 024676 230 TESASLE--PKLGNIFIAGGE---DMWVHVFDFHTGE 261 (264)
Q Consensus 230 ~~~~~~~--~~~~~~~~~gs~---d~~v~vwd~~~g~ 261 (264)
....... +..+.++++.++ =..++.+|+.+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 1111111 222344444333 4556777776654
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=91.61 E-value=7.5 Score=32.77 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=76.1
Q ss_pred CCeeeeEeccCCCCCeEEEEEeCCCCcEEE-eCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLR-NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (264)
Q Consensus 17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~-~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 95 (264)
..+.++.+.| ++.++++ +..|.+..- +.....+...-.+-...+.++.+.+++..++.| ..|.+++=....+..
T Consensus 173 g~~~~i~~~~---~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRRSP---DGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEECC---CCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 3466777764 6665544 444544321 211123443333345678889999988776654 456665322334432
Q ss_pred EEEee-----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec---cCCCCeEEEEEecCCCeEEEEeeCC
Q 024676 96 KHSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDS 167 (264)
Q Consensus 96 ~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~d 167 (264)
..... ....+..+.+.|++..++ ++.++.+.. ..+.++ ...... ........+.+.+++. .++++. .
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~-tW~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~-~ 322 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGK-TWEKDPVGEEVPSNFYKIVFLDPEK-GFVLGQ-R 322 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCC-CCeECCcCCCCCcceEEEEEeCCCc-eEEECC-C
Confidence 22211 123467788888877655 455665442 223222 222221 1122455666665443 455544 4
Q ss_pred CeEEEEEC
Q 024676 168 GGVRLWDA 175 (264)
Q Consensus 168 ~~v~iwd~ 175 (264)
|.|.-|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877653
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.59 E-value=8.6 Score=33.44 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCeeeeEeccC--------CCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEEC
Q 024676 17 RPVVDLFYSPI--------TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70 (264)
Q Consensus 17 ~~v~~~~~~~~--------~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~ 70 (264)
+.|+++.+-|. .+|...++.|..+|.+++|.. +|.++..=.-|..+|..+...
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 57888888876 256789999999999999986 566543323477788777664
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=8.1 Score=33.73 Aligned_cols=138 Identities=11% Similarity=0.107 Sum_probs=78.2
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--CceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 95 (264)
-+.+.|. |.+.++-+-..|.+.=|.... ....-.|. .-+++|.++.|++|.+.+|.--.|.+|.+.+....+.
T Consensus 25 sngvFfD----DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 25 SNGVFFD----DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred ccceeec----cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
Confidence 3456776 333344444555555554322 12222332 3567999999999999999999999999999855443
Q ss_pred EEEeec-----CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676 96 KHSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (264)
Q Consensus 96 ~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (264)
+..+.| ...+.+.+|..+-.+.+. +. .-+-+|.........+....++..+.=..|+++...++.
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i-~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSSTEIAFI-TD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCeeEEEE-ec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 333322 224777888777443332 22 224455443222223333444555555667766554433
No 424
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.12 E-value=7.5 Score=31.86 Aligned_cols=159 Identities=9% Similarity=0.097 Sum_probs=87.4
Q ss_pred CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE
Q 024676 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182 (264)
Q Consensus 103 ~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~ 182 (264)
..+.++.|+|+.+.|++......--++=...|+.........-.-...+.|..++ .++++--.++++.++.+.....+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEE
Confidence 3488999999999999887665544442223332212111111223445666433 345555566777777665442211
Q ss_pred -----Ee-----cC-CCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCce-ee--eEEecC--------CCCceeeEcCCC
Q 024676 183 -----TL-----ET-KSPVTSAEVSRDGR-YITTADGSSVKFWDANHFG-LV--KGYNMP--------CNTESASLEPKL 239 (264)
Q Consensus 183 -----~~-----~~-~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~-~~--~~~~~~--------~~~~~~~~~~~~ 239 (264)
.+ .. +.....+++.|... ++++-+-.-++||...... .+ +.-..+ .....+.+.+..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 11 11 34467899999875 4555555556666554221 01 000001 111234455666
Q ss_pred CCEEEEecCCCeEEEEEcCcceee
Q 024676 240 GNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 240 ~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
+++++-+.+++.+.-.|. .|+.+
T Consensus 245 ~~LLVLS~ESr~l~Evd~-~G~~~ 267 (316)
T COG3204 245 NSLLVLSDESRRLLEVDL-SGEVI 267 (316)
T ss_pred CcEEEEecCCceEEEEec-CCCee
Confidence 889999999998888886 35543
No 425
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.93 E-value=9.4 Score=32.68 Aligned_cols=229 Identities=15% Similarity=0.101 Sum_probs=103.1
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEE--CCCCcEEEEe---cCC-------------------CeE
Q 024676 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL--DANALFSASG---SAD-------------------FTA 85 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~--~~~~~~l~s~---s~D-------------------~~v 85 (264)
+.+.|+--...+.++-.|+.+++....+.-.++.+-...| ..|...++.. ..| ..|
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i 170 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI 170 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence 3344443444455666677777644444444444443444 3455554432 111 223
Q ss_pred EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-Ee---eCCCc-EEEeeCCCCCCCCeEeccC-CCC-eEEEEEecCCC
Q 024676 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TG---GFEKI-LRIFDLNRPDAPPREVGNS-SGS-IRTVAWLHSDQ 158 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~---~~d~~-i~~~d~~~~~~~~~~~~~~-~~~-i~~~~~~~~~~ 158 (264)
.--|+.+|+....++...-+..+.++|....++ -| .++.. -|+|-+++.......+..+ .+. +..=-|.+++.
T Consensus 171 ~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 171 FTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred EEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 334667777666666666778889999554444 44 34443 4777665332222221111 222 23334667776
Q ss_pred eEEEEee----CCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCC----------------cEEEEECCC
Q 024676 159 TILSSCT----DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGS----------------SVKFWDANH 217 (264)
Q Consensus 159 ~~~~~~~----~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~----------------~i~iwd~~~ 217 (264)
.+.-.+. .+..|.-+|+.+++........ +..-+..++||+++++ +.|. .|.+++++.
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 6544222 2335666788888654333322 3445567799999876 2221 456678776
Q ss_pred ceeeeEEecC-----------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676 218 FGLVKGYNMP-----------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 218 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
.+........ ..-.-.+|+|++..+|.+..-.|...||=++-
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 5432111110 01123568886445555777788888886543
No 426
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.84 E-value=4.6 Score=28.93 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=57.6
Q ss_pred EEEeeCCCeEEEEECCCC--------ceeEEecCCCCEEEEEEcC---C--CcEEEEeCCCcEEEEECCCceeeeEEecC
Q 024676 161 LSSCTDSGGVRLWDARSG--------KIVQTLETKSPVTSAEVSR---D--GRYITTADGSSVKFWDANHFGLVKGYNMP 227 (264)
Q Consensus 161 ~~~~~~d~~v~iwd~~~~--------~~~~~~~~~~~v~~~~~s~---~--~~~l~~~~~~~i~iwd~~~~~~~~~~~~~ 227 (264)
|+.+..-++|.|.+.... ..+..++....|.+++..| + ...|..++...+..||+.+..-+-.-.++
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~ 92 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVP 92 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCc
Confidence 333344588999987633 3455566677788886654 2 34667777789999999876543222233
Q ss_pred CCCceeeE---cCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 228 CNTESASL---EPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 228 ~~~~~~~~---~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
-...++.+ ......+++.| .+-.|.-||. .|++
T Consensus 93 DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~-~G~e 128 (136)
T PF14781_consen 93 DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDY-EGNE 128 (136)
T ss_pred cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCC-CCcE
Confidence 33333332 12123444444 4667777775 3544
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.09 E-value=6.2 Score=36.59 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=72.0
Q ss_pred CEEEEEEC--CCCcEEEEecCCCeEEEEeCCC-------C----c---------EEEEeecCCeEEEEEEC--CCCCEEE
Q 024676 63 AVWSCCLD--ANALFSASGSADFTAKLWDALT-------G----D---------EKHSFEHKHIVRACAFS--EDTHLLL 118 (264)
Q Consensus 63 ~V~~v~~~--~~~~~l~s~s~D~~v~iwd~~~-------~----~---------~~~~~~~~~~v~~~~~~--~~~~~l~ 118 (264)
.|+.+... .....|+.+.+||.|.+|.+.. . . +...+......++++++ ...+++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 35555443 2456788899999999997521 0 0 11222345568899998 8888898
Q ss_pred EeeCCCcEEEeeCCCC--CCCCeEeccCCCCeEEEEEecCC----Ce-EEEEeeCCCeEEEEEC
Q 024676 119 TGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHSD----QT-ILSSCTDSGGVRLWDA 175 (264)
Q Consensus 119 s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~----~~-~~~~~~~d~~v~iwd~ 175 (264)
+++....|.+|-.... +........+...|.+++|.+.+ ++ .+++++-.|.+-+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888865431 11111111244568888888654 22 5666777788888777
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=5.7 Score=30.89 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=66.7
Q ss_pred EEEEeecCCe--EEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe-EEEEeeCCCe
Q 024676 95 EKHSFEHKHI--VRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDSGG 169 (264)
Q Consensus 95 ~~~~~~~~~~--v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d~~ 169 (264)
.+++++|... -..+.+. +++++.+.+. ...|+.||+++++....+.... ..+..--...-+.. +..+ -.+|.
T Consensus 36 vi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LT-w~egv 112 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLT-WKEGV 112 (262)
T ss_pred EEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEE-eccce
Confidence 3445555432 2334433 3466776664 3569999998765443332221 11100000111222 2333 35688
Q ss_pred EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEe
Q 024676 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYN 225 (264)
Q Consensus 170 v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 225 (264)
-.++|.++.+++..+..+..--. ...|++-+..++ ..++++-|.+++...++.+
T Consensus 113 af~~d~~t~~~lg~~~y~GeGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~ 167 (262)
T COG3823 113 AFKYDADTLEELGRFSYEGEGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQ 167 (262)
T ss_pred eEEEChHHhhhhcccccCCccee--eecCCcceEeeCCceEEEecCHHHhhhcceEE
Confidence 89999999998876655443333 334554444444 3578888877766555554
No 429
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.70 E-value=10 Score=31.28 Aligned_cols=198 Identities=12% Similarity=0.099 Sum_probs=106.0
Q ss_pred EEEEECCCCcEEEEecCCCeEEEEeCC------CCc-EEEEee------cCCeEEEEEECCCC------------CEEEE
Q 024676 65 WSCCLDANALFSASGSADFTAKLWDAL------TGD-EKHSFE------HKHIVRACAFSEDT------------HLLLT 119 (264)
Q Consensus 65 ~~v~~~~~~~~l~s~s~D~~v~iwd~~------~~~-~~~~~~------~~~~v~~~~~~~~~------------~~l~s 119 (264)
|.++++|.+.+-++....++..+||.. ... ...+++ .....+.+.|+... ..++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 779999999887888888899999986 121 222322 12245566665432 22567
Q ss_pred eeCCCcEEEeeCCCCCC----CCeEecc-CCCCeEE-EEEe--cCCCeEEEEeeCCCeEEEEECCCCcee--EEe-----
Q 024676 120 GGFEKILRIFDLNRPDA----PPREVGN-SSGSIRT-VAWL--HSDQTILSSCTDSGGVRLWDARSGKIV--QTL----- 184 (264)
Q Consensus 120 ~~~d~~i~~~d~~~~~~----~~~~~~~-~~~~i~~-~~~~--~~~~~~~~~~~~d~~v~iwd~~~~~~~--~~~----- 184 (264)
++.|++|.-|.-.-... ....... ..+.+.. +++- ..+..+.++-...++|.+||-.=.+.. ..+
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 88999999998422111 1111111 1233322 3332 234567777777899999986533221 011
Q ss_pred cCCCCEEEEEE------------cCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCCCc--------eeeEcCCCCCEE
Q 024676 185 ETKSPVTSAEV------------SRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCNTE--------SASLEPKLGNIF 243 (264)
Q Consensus 185 ~~~~~v~~~~~------------s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 243 (264)
........++. .++.+- +....-+.|-++|.. +..++.+....... ...|-.-.+++|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL 264 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALL 264 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence 11111111211 122211 111112467888864 44566664322111 112223347788
Q ss_pred EEecCCCeEEEEEcCcceee
Q 024676 244 IAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 244 ~~gs~d~~v~vwd~~~g~~i 263 (264)
+.-=.||+|..||..+|+-+
T Consensus 265 VGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 265 VGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred EeecCCceeEEecCCCCcee
Confidence 87666999999999888754
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.52 E-value=12 Score=31.88 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=71.6
Q ss_pred EEEEEECCCCcEEEEec-----------CCC-eEEEEeCCC--Cc--EEEEee-cCCeEEEEEECCCCCEEEEeeCCCcE
Q 024676 64 VWSCCLDANALFSASGS-----------ADF-TAKLWDALT--GD--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKIL 126 (264)
Q Consensus 64 V~~v~~~~~~~~l~s~s-----------~D~-~v~iwd~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i 126 (264)
...++|.+++.+.++-. ..+ .|.+++-.+ +. ....+. .-...+.+++.+++ +++ +......
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 35678888887766532 122 566665432 22 122332 22345778888888 444 4444444
Q ss_pred EEeeCCCCC-C--CCe-E---ecc----CCCCeEEEEEecCCCeEEEEeeC------------------CCeEEEEECCC
Q 024676 127 RIFDLNRPD-A--PPR-E---VGN----SSGSIRTVAWLHSDQTILSSCTD------------------SGGVRLWDARS 177 (264)
Q Consensus 127 ~~~d~~~~~-~--~~~-~---~~~----~~~~i~~~~~~~~~~~~~~~~~~------------------d~~v~iwd~~~ 177 (264)
++.|.+... . ..+ . +.. +......+++.+++..+++.++. .+.|.-+|..+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 444543211 1 111 1 111 11235567777766544544421 13455556665
Q ss_pred CceeEEecCCCCEEEEEEcCCCcEEEEeC
Q 024676 178 GKIVQTLETKSPVTSAEVSRDGRYITTAD 206 (264)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 206 (264)
++....-........++|+|+|.++++-.
T Consensus 174 ~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 54322112334466789999998877643
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.41 E-value=3.6 Score=32.35 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=39.0
Q ss_pred ECCCCcEEEEecCCCeEEEEeCCCCcEEEEe---------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676 69 LDANALFSASGSADFTAKLWDALTGDEKHSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (264)
Q Consensus 69 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~ 131 (264)
+..++.+++.-..+|.+.+||+.+++..... .....|..+.++.+|.-+++-+ ++....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 4456777888888999999999887643322 1223456666666665555433 345566654
No 432
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.04 E-value=2.4 Score=23.01 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCCcEE-EEe-CCCcEEEEECCCceeeeEEecCCCCceee
Q 024676 197 RDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESAS 234 (264)
Q Consensus 197 ~~~~~l-~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (264)
|+++++ ++. .++.|.++|..+++.+..+.....+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 566654 333 35799999999998888887765555443
No 433
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.60 E-value=22 Score=33.66 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-------CeEEEEEec----------------CCCeEEEEeeCCCeE
Q 024676 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-------SIRTVAWLH----------------SDQTILSSCTDSGGV 170 (264)
Q Consensus 114 ~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-------~i~~~~~~~----------------~~~~~~~~~~~d~~v 170 (264)
+..++.++.++.+.-.|..+++...+....... ....+++.. .+..++ .++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~-~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII-LPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE-EecCCCeE
Confidence 446666777777777777766655443221110 011222221 122344 44567999
Q ss_pred EEEECCCCceeEEecCCCCEE-------------EEEEcC---CCcEEEEeC----------CCcEEEEECCCceeeeEE
Q 024676 171 RLWDARSGKIVQTLETKSPVT-------------SAEVSR---DGRYITTAD----------GSSVKFWDANHFGLVKGY 224 (264)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~v~-------------~~~~s~---~~~~l~~~~----------~~~i~iwd~~~~~~~~~~ 224 (264)
.-.|.++|+....+..+..+. ...-+| ++..++++. ++.|+=+|.++++.+=.+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999887664332221 111122 445555432 467899999999876555
Q ss_pred e
Q 024676 225 N 225 (264)
Q Consensus 225 ~ 225 (264)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=3.2 Score=40.10 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=84.4
Q ss_pred CeeeeEeccCCCCCe--EEEEEeCCCCcEEEeCCCCce-----EEeeeCC----cC--CEEEEEECCCC-cEEEEecCCC
Q 024676 18 PVVDLFYSPITPDGF--FLVSASKDSSPMLRNGETGDW-----IGTFEGH----KG--AVWSCCLDANA-LFSASGSADF 83 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~--~l~t~s~d~~v~i~~~~~~~~-----~~~~~~H----~~--~V~~v~~~~~~-~~l~s~s~D~ 83 (264)
+|..+...+ |+. .++..+.+..|..+|+++-.. .+.|..| .. .+.++.|.|.- ...+....|+
T Consensus 102 pi~~~v~~~---D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 102 PIVIFVCFH---DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred cceEEEecc---CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 344444443 543 444445544677788865421 1222222 22 33556677653 3346678899
Q ss_pred eEEEEeCCCCc-EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC--CCCeEeccCCCCeEEEEEecCCCeE
Q 024676 84 TAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD--APPREVGNSSGSIRTVAWLHSDQTI 160 (264)
Q Consensus 84 ~v~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (264)
.+++.-+.... ....+.....+++++|+|-|+.++.|-..|++.-|.-.-.. .+...-......+.+++|.....++
T Consensus 179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 89888765432 33345666778999999999999999999999888643211 1111111124678999999765554
Q ss_pred EE
Q 024676 161 LS 162 (264)
Q Consensus 161 ~~ 162 (264)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 43
No 435
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.41 E-value=1.5 Score=29.06 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC
Q 024676 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 207 (264)
..|.+.-||.++++..--+..-.-.+.+++++|+.++..++-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 348899999999986544554457899999999998877653
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.26 E-value=8.1 Score=34.34 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=24.1
Q ss_pred EEEEEECCCC---CEEEEeeCCCcEEEeeCCCCCCC
Q 024676 105 VRACAFSEDT---HLLLTGGFEKILRIFDLNRPDAP 137 (264)
Q Consensus 105 v~~~~~~~~~---~~l~s~~~d~~i~~~d~~~~~~~ 137 (264)
+.-++|||++ ..|..-+.|++||+||+.+....
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 4456788864 66777788999999998765443
No 437
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.39 E-value=1.4 Score=22.54 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.7
Q ss_pred CEEEEecCCCeEEEEEcCcceee
Q 024676 241 NIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 241 ~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
..++.++.++.++.+|.++|+++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEE
Confidence 36778888999999999999875
No 438
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.26 E-value=16 Score=30.35 Aligned_cols=227 Identities=14% Similarity=0.062 Sum_probs=106.4
Q ss_pred cCCCCCeEEEEEeCCCCcEEEeCCC--CceEEeeeCCcCCEEEEEECCCCcEEEEe-cCCCeEEEEeCCCCcE-------
Q 024676 26 PITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALTGDE------- 95 (264)
Q Consensus 26 ~~~~~g~~l~t~s~d~~v~i~~~~~--~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-s~D~~v~iwd~~~~~~------- 95 (264)
|.+.++++|+.|..+|.-.+. ... ++..+.+ +...|..+...+....+++- +....++.+++..-..
T Consensus 8 ~~~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~ 84 (302)
T smart00036 8 PITCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS 84 (302)
T ss_pred ccccCCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence 444455689999999976554 443 3343333 45688889888766665543 3334499998733221
Q ss_pred ---------EEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEec-------cCCCCeEEEEEecC--
Q 024676 96 ---------KHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG-------NSSGSIRTVAWLHS-- 156 (264)
Q Consensus 96 ---------~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~-- 156 (264)
.....+.+....+...... ..++.+.....|.++............. ....++..+..++.
T Consensus 85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T smart00036 85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFE 164 (302)
T ss_pred ccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeeccccc
Confidence 1223344433333333222 2334455567777776543311111111 11122222222221
Q ss_pred CCeEEEEeeCCCeEEEEECCC--CceeE------EecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee--EEe
Q 024676 157 DQTILSSCTDSGGVRLWDARS--GKIVQ------TLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYN 225 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~--~~~~~------~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~--~~~ 225 (264)
...+++++.. +...+.++.. ...-. ..... .++....+ +++.++.+-++ ...+-|.......+ .+.
T Consensus 165 ~~~lcvG~~~-~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~ 241 (302)
T smart00036 165 RPGICIGSDK-GGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCYDE-FGVFVNLYGKRRSRNPILH 241 (302)
T ss_pred ceEEEEEEcC-CCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEECc-EEEEEeCCCCccccceEEE
Confidence 2234444332 2344444432 11100 00111 23333333 34566665543 34444543212222 233
Q ss_pred cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~ 262 (264)
....+.+++... .++++-+. ..|.++++.+|+.
T Consensus 242 w~~~p~~~~~~~---pyll~~~~-~~ievr~l~~~~l 274 (302)
T smart00036 242 WEFMPESFAYHS---PYLLAFHD-NGIEIRSIKTGEL 274 (302)
T ss_pred cCCcccEEEEEC---CEEEEEcC-CcEEEEECCCCce
Confidence 444555555542 34555554 4499999988864
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.83 E-value=23 Score=33.31 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=33.8
Q ss_pred ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC
Q 024676 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG 51 (264)
Q Consensus 14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~ 51 (264)
++...|..++|+|.++++.+|+.=..|+.+|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 56678999999999988999999999999999999754
No 440
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.72 E-value=28 Score=32.66 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=41.0
Q ss_pred CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (264)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d 130 (264)
.+.++.-+|.+.-++.++.|+++++++..............|-..+.+...| |++...|+..--|.
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 4566777899999999999999999998765542222222333333333223 45555565555564
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.58 E-value=4.9 Score=36.36 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=22.7
Q ss_pred CCeEEEEeeCCCeEEEEECCCCceeEEe
Q 024676 157 DQTILSSCTDSGGVRLWDARSGKIVQTL 184 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~ 184 (264)
+..++.+.+.|+++|+||+++++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4556767788899999999999996654
No 442
>PRK10115 protease 2; Provisional
Probab=86.54 E-value=28 Score=32.60 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=62.3
Q ss_pred CEEEEEECCCCcEEEEe-c----CCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCC------CcEEEee
Q 024676 63 AVWSCCLDANALFSASG-S----ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE------KILRIFD 130 (264)
Q Consensus 63 ~V~~v~~~~~~~~l~s~-s----~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~d 130 (264)
.+..+.++||+++++-+ + ....+++-|+.++..+... .... ..++|.++++.|+....+ ..+..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 35567889999987643 2 2247888898887533221 1111 458999988776665442 3466777
Q ss_pred CCCCCCCCeEecc-CCCCeEEEEEec-CCCeEEEEee--CCCeEEEEEC
Q 024676 131 LNRPDAPPREVGN-SSGSIRTVAWLH-SDQTILSSCT--DSGGVRLWDA 175 (264)
Q Consensus 131 ~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~~~~~--~d~~v~iwd~ 175 (264)
+.++......+.. .........+.+ ++..+++.+. .++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 7766222222222 222233233344 5555555433 3357888885
No 443
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.21 E-value=5.5 Score=34.70 Aligned_cols=161 Identities=11% Similarity=0.046 Sum_probs=84.1
Q ss_pred eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE-EEee---cC---CeEE-EEEECCCCCEEEEeeCCCcEEE
Q 024676 57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK-HSFE---HK---HIVR-ACAFSEDTHLLLTGGFEKILRI 128 (264)
Q Consensus 57 ~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~---~~---~~v~-~~~~~~~~~~l~s~~~d~~i~~ 128 (264)
+..--..|..+-..||++.+..-+. ..+.++++.+.... +.+. .. +.|+ .+..-..+.-++.++.||.+.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3333455666778899987755443 46788887554311 1111 11 1111 0101112455677788888776
Q ss_pred e-eCCCCCCCC-e--EeccCC-CCeEEEEEecC-CCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE
Q 024676 129 F-DLNRPDAPP-R--EVGNSS-GSIRTVAWLHS-DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202 (264)
Q Consensus 129 ~-d~~~~~~~~-~--~~~~~~-~~i~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 202 (264)
| |.++..... . ...... .++..+ .|+ ...-+.+-+.+|++.++-.-..+.+..-..-....-+++||++.++
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchh
Confidence 5 654432211 1 111111 122111 222 1223445556677777665444433211222245668899999999
Q ss_pred EEeCCCcEEEEECCCcee
Q 024676 203 TTADGSSVKFWDANHFGL 220 (264)
Q Consensus 203 ~~~~~~~i~iwd~~~~~~ 220 (264)
..-+.+.|+++.+++..+
T Consensus 373 l~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 373 LSEDQGKIRLAQLENRNP 390 (733)
T ss_pred eeecCCceEEEEecCCCC
Confidence 888889999999877654
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.73 E-value=11 Score=27.05 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=51.3
Q ss_pred EECCCCCEEEEeeCCCcEEEeeCCCCCC------CCeEeccCCCCeEEEEEec----CCCeEEEEeeCCCeEEEEECCCC
Q 024676 109 AFSEDTHLLLTGGFEKILRIFDLNRPDA------PPREVGNSSGSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~d~~v~iwd~~~~ 178 (264)
.|+.....|+.++.-++|.+++...... .......-+..+.+++--+ .+.-.|+.|+. ..+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 4555556677777788888887543211 1112233455666665332 22335555555 68999999988
Q ss_pred ceeEEecCCCCEEEEEE
Q 024676 179 KIVQTLETKSPVTSAEV 195 (264)
Q Consensus 179 ~~~~~~~~~~~v~~~~~ 195 (264)
..+..-+....++++.+
T Consensus 84 ~d~Fyke~~DGvn~i~~ 100 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVI 100 (136)
T ss_pred chhhhhhCccceeEEEE
Confidence 76654445556776665
No 445
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.47 E-value=24 Score=30.81 Aligned_cols=201 Identities=15% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCeeeeEecc--------CCCCCeEEEEEe-CCCCcEEEeCCCC----ceEEeeeC---Cc--C--CEEEEEECCCCcEE
Q 024676 17 RPVVDLFYSP--------ITPDGFFLVSAS-KDSSPMLRNGETG----DWIGTFEG---HK--G--AVWSCCLDANALFS 76 (264)
Q Consensus 17 ~~v~~~~~~~--------~~~~g~~l~t~s-~d~~v~i~~~~~~----~~~~~~~~---H~--~--~V~~v~~~~~~~~l 76 (264)
.+..+.-|+. .+.+.++|+..+ .+..|.|.|..+. +..+.++. ++ + .-+.+.--|+|..+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 3555666652 123467777777 5567788888743 33444442 21 1 11222234678777
Q ss_pred EEe--cCC----CeEEEEeCCCCcEEEEeecC----CeEEEEEECCCCCEEEEee--------------------CCCcE
Q 024676 77 ASG--SAD----FTAKLWDALTGDEKHSFEHK----HIVRACAFSEDTHLLLTGG--------------------FEKIL 126 (264)
Q Consensus 77 ~s~--s~D----~~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~--------------------~d~~i 126 (264)
+|+ ..+ |-+-+.|-++.+.+-.++.. ..-....|.|-.+.++|.. ..+.+
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 664 222 45667777777766666532 2345677888877887753 34669
Q ss_pred EEeeCCCCCCCCeEeccCCC-CeEEEEEecC--CCeEEEEeeCCCeE-EEEECCCCc----eeEEecC------------
Q 024676 127 RIFDLNRPDAPPREVGNSSG-SIRTVAWLHS--DQTILSSCTDSGGV-RLWDARSGK----IVQTLET------------ 186 (264)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~~~~~d~~v-~iwd~~~~~----~~~~~~~------------ 186 (264)
.+||+.+.+..+.......+ ....+.|.++ ..+=++++.-...| ++|..+.++ .+..+..
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 99999877655444333333 3456677643 22223333322333 444434443 1122211
Q ss_pred ------CCCEEEEEEcCCCcEEEEe-C-CCcEEEEECCC
Q 024676 187 ------KSPVTSAEVSRDGRYITTA-D-GSSVKFWDANH 217 (264)
Q Consensus 187 ------~~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~~ 217 (264)
..-++.+.+|.|.+||-.+ . .+.|+-||+..
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 1237889999999987554 3 68999999975
No 446
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.93 E-value=19 Score=29.03 Aligned_cols=142 Identities=14% Similarity=0.038 Sum_probs=81.9
Q ss_pred CEEEEEECCCCcEEEEec---CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee-CCCCCCCC
Q 024676 63 AVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPP 138 (264)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d-~~~~~~~~ 138 (264)
.+.+.++++++..++... ....+.++...... ........+..-.|++++...+....+...+++. ...++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 577889999998765443 33455555543322 2221233556667899987777666666666663 23333222
Q ss_pred eEeccC--CCCeEEEEEecCCCeEEEEee--CCCeEEEEECC---CC--ce----eEEe-cCCCCEEEEEEcCCCcEEEE
Q 024676 139 REVGNS--SGSIRTVAWLHSDQTILSSCT--DSGGVRLWDAR---SG--KI----VQTL-ETKSPVTSAEVSRDGRYITT 204 (264)
Q Consensus 139 ~~~~~~--~~~i~~~~~~~~~~~~~~~~~--~d~~v~iwd~~---~~--~~----~~~~-~~~~~v~~~~~s~~~~~l~~ 204 (264)
...... .+.|..+.+++++..+++... .++.|.+=-+. .+ .. +... .....+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 222221 227899999998877655442 33566665432 22 11 1111 12357889999999988765
Q ss_pred eC
Q 024676 205 AD 206 (264)
Q Consensus 205 ~~ 206 (264)
..
T Consensus 183 ~~ 184 (253)
T PF10647_consen 183 GR 184 (253)
T ss_pred eC
Confidence 43
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.97 E-value=25 Score=32.88 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCeEEEEeeCCCeEEEEECCC-------C-------------ceeEEecCCCCEEEEEEc--CCCcEEEEeCC-CcEEEE
Q 024676 157 DQTILSSCTDSGGVRLWDARS-------G-------------KIVQTLETKSPVTSAEVS--RDGRYITTADG-SSVKFW 213 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~-~~i~iw 213 (264)
+..+|+.|.+||.|.+|-.++ . ++...+.....+-.++++ ...++||.+++ ..|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 445788888999999996531 1 011222334456778887 77788887764 566665
Q ss_pred ECCC--c--eeeeEEecCCCCceeeEcCCC----CC-EEEEecCCCeEEEEEc
Q 024676 214 DANH--F--GLVKGYNMPCNTESASLEPKL----GN-IFIAGGEDMWVHVFDF 257 (264)
Q Consensus 214 d~~~--~--~~~~~~~~~~~~~~~~~~~~~----~~-~~~~gs~d~~v~vwd~ 257 (264)
-... . .....+....+..+++|.+.. |. .+++++-.|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4322 1 112233344556666665433 33 7888999999999877
No 448
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.47 E-value=2.2 Score=22.97 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=17.3
Q ss_pred EEEecCCCeEEEEEcCcceee
Q 024676 243 FIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 243 ~~~gs~d~~v~vwd~~~g~~i 263 (264)
+..++.|+.++-.|.++|+.+
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEE
T ss_pred EEEeCCCCEEEEEECCCCCEE
Confidence 445589999999999999875
No 449
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.60 E-value=23 Score=28.35 Aligned_cols=139 Identities=18% Similarity=0.194 Sum_probs=75.0
Q ss_pred EEEeCCCCcEEEEeecCC-eEEEEEECCCCCEEEEeeC-C--CcEEEeeCCC--CCCCCeEec---cCCCCeEEEEEecC
Q 024676 86 KLWDALTGDEKHSFEHKH-IVRACAFSEDTHLLLTGGF-E--KILRIFDLNR--PDAPPREVG---NSSGSIRTVAWLHS 156 (264)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~-d--~~i~~~d~~~--~~~~~~~~~---~~~~~i~~~~~~~~ 156 (264)
-+||..++......-..+ ...+-.+-++|+++.+|+. + +.+++++.-. ......+.. ...-.-.+....++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 468887765432211111 2223346779999998875 2 4577887532 111122211 11112223344677
Q ss_pred CCeEEEEeeCCCeEEEEECCCC--ceeE-Ee-c------CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676 157 DQTILSSCTDSGGVRLWDARSG--KIVQ-TL-E------TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN 225 (264)
Q Consensus 157 ~~~~~~~~~~d~~v~iwd~~~~--~~~~-~~-~------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~ 225 (264)
+..++++|...-...+|..+.. .... .+ . ....-..+.+-|+|+++..+.. .-.|||..+.+.++.+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCCCeEEeeCC
Confidence 7777777776556777765321 1111 11 1 1112235677899999887764 45677998887766664
No 450
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.15 E-value=31 Score=29.46 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=53.3
Q ss_pred eeeEeccCCCCCeEEEEEe-----------CCC-CcEEEeCCC--Cc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676 20 VDLFYSPITPDGFFLVSAS-----------KDS-SPMLRNGET--GD--WIGTFEGHKGAVWSCCLDANALFSASGSADF 83 (264)
Q Consensus 20 ~~~~~~~~~~~g~~l~t~s-----------~d~-~v~i~~~~~--~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~ 83 (264)
.+|+|.+ +|++.++-. ..+ .|.+.+-.+ |. ....|.........+++.+++ .+++ +.+.
T Consensus 17 ~~ia~d~---~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~ 91 (367)
T TIGR02604 17 IAVCFDE---RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD 91 (367)
T ss_pred ceeeECC---CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence 4788885 888776643 122 455554332 32 223443333455788898888 4443 4454
Q ss_pred eEEEEeCCCC-----c--EEEE-eec-----CCeEEEEEECCCCCEEEEee
Q 024676 84 TAKLWDALTG-----D--EKHS-FEH-----KHIVRACAFSEDTHLLLTGG 121 (264)
Q Consensus 84 ~v~iwd~~~~-----~--~~~~-~~~-----~~~v~~~~~~~~~~~l~s~~ 121 (264)
..++.|.... + .+.. +.. .+..+.+.+.|++.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4445454321 1 1111 211 34577899999998777654
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.90 E-value=38 Score=30.30 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=79.9
Q ss_pred CCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCC--------CEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676 71 ANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--------HLLLTGGFEKILRIFDLNRPDAPPREV 141 (264)
Q Consensus 71 ~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~s~~~d~~i~~~d~~~~~~~~~~~ 141 (264)
.|..++ ..|.....+.--|++-|+.+..+.....| .+.|.|.. +.|+ |-.+..|.-.|.+...-.. ..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi-~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI-KV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCce-ee
Confidence 344443 45665556666678888888887765555 66777753 3343 4445555545543222110 01
Q ss_pred ccCCCCeEEEEE----ecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC
Q 024676 142 GNSSGSIRTVAW----LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (264)
Q Consensus 142 ~~~~~~i~~~~~----~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~ 216 (264)
...+.....-.| ....+ +++.++..|-||+||--.-+..-.+. ....|..+..+.+|+++.+.-..++.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 111111111111 22334 45566778999999953322222232 3456888999999999877666788888875
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.68 E-value=0.19 Score=43.58 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=83.1
Q ss_pred EEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCCeEec-c
Q 024676 66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVG-N 143 (264)
Q Consensus 66 ~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~-~ 143 (264)
...|-+.+.-++.++.+..+..||-. ++.......+.....++|+.++..++ .+-..+++.+||+++.....-..+ .
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~ 117 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT 117 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence 35567777667888888899999843 33333333334445567777765544 355678999999976543322222 1
Q ss_pred CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe
Q 024676 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA 205 (264)
Q Consensus 144 ~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 205 (264)
+..+. ..|++.....++ +-..+.+.|+...+.+...... +...+.++++.+.+..+.++
T Consensus 118 ~s~sl--l~wsKg~~el~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 118 SSKSL--LAWSKGTPELVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred chHHH--HhhccCCccccc-cccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 22222 456654444333 4456889999988776544443 55668888888877655544
No 453
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.42 E-value=31 Score=28.34 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=57.0
Q ss_pred CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec------CCCeEEEEeCCCCcEEEEee------cCCeEEEE
Q 024676 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFE------HKHIVRAC 108 (264)
Q Consensus 41 ~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~------~~~~v~~~ 108 (264)
..+.+||..+.++...-.+=.+.|..+.|..+.+.++.|. ....+-.||..+..- ..+. -..+|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 3477899998888766666678899999987777777763 456777888776532 1221 23567766
Q ss_pred EECC--CCCEEEEee-C--CCcEEEeeC
Q 024676 109 AFSE--DTHLLLTGG-F--EKILRIFDL 131 (264)
Q Consensus 109 ~~~~--~~~~l~s~~-~--d~~i~~~d~ 131 (264)
.+.. ..++.++|. . +..+..||-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 6533 234444443 2 233555653
No 454
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.08 E-value=37 Score=29.06 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=14.6
Q ss_pred CCCEEEEecCCC------eEEEEEcCcce
Q 024676 239 LGNIFIAGGEDM------WVHVFDFHTGE 261 (264)
Q Consensus 239 ~~~~~~~gs~d~------~v~vwd~~~g~ 261 (264)
.+++++.||... .|.+++..++.
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~ 371 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGKK 371 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCCE
Confidence 477888888643 56666655543
No 455
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=79.41 E-value=10 Score=35.56 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=75.9
Q ss_pred EEEEEeCCCCcEEEeCCCCc---eE-EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE--------EeCCCCcEEEEee
Q 024676 33 FLVSASKDSSPMLRNGETGD---WI-GTFEGHKGAVWSCCLDANALFSASGSADFTAKL--------WDALTGDEKHSFE 100 (264)
Q Consensus 33 ~l~t~s~d~~v~i~~~~~~~---~~-~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i--------wd~~~~~~~~~~~ 100 (264)
....|+.++.+.++...++. .. ..+..-...+.++.+++... ..|.-||++-. ||.... +....
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Sl--gagl~dgt~a~y~rap~gSwd~ep~--~~~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSL--GAGLIDGTLAVYGRAPSGSWDGEPN--ISIPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccccc--ccCccCCccccccCCCCCCCCCCCc--ccccc
Confidence 45778889999888766332 22 22333445676766665432 22333443333 554411 11122
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 178 (264)
...+|+...+..+ ++-++.+|++.++...+..... ...-.+...|+++.+...+-++..+ +. ..+++++.++.
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafa-sG-~~~rlfhtetl 699 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFA-SG-DEERLFHTETL 699 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEc-CC-CEEEEeccccc
Confidence 3446666655432 4456788999999876532221 2222345578888877555443333 33 47888776665
Q ss_pred ceeE
Q 024676 179 KIVQ 182 (264)
Q Consensus 179 ~~~~ 182 (264)
.-.+
T Consensus 700 ~hlq 703 (925)
T KOG3522|consen 700 WHLQ 703 (925)
T ss_pred CCcc
Confidence 4433
No 456
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=79.26 E-value=39 Score=28.80 Aligned_cols=191 Identities=15% Similarity=0.057 Sum_probs=88.2
Q ss_pred EEEEEeCCCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC-e-EEEE
Q 024676 33 FLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH-I-VRAC 108 (264)
Q Consensus 33 ~l~t~s~d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~-v~~~ 108 (264)
.+..+..||.+.-.|.++++.+ ..+.+....+..=.+..+|+ +..++.++.+...|..+|+.+..++... + +..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3455577887777788877632 22221111111111222665 5667888878888888888877776554 1 1111
Q ss_pred EECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC--CCCeEEEEEecCCCeEEEEeeC-CCeEEEEECCCCceeEEec
Q 024676 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTLE 185 (264)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~~ 185 (264)
..- .+..++.++.++.+...|..+++......... ...+.... ...++.+++.... ++.+.-.|.++|+......
T Consensus 149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSP-AIASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCc-eeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 111 12233333345655555555444332211110 00000000 0122333433221 4567777888888766532
Q ss_pred CCCCEEE-----EEEcC------CCcEEEEeCCCcEEEEECCCceeeeEEec
Q 024676 186 TKSPVTS-----AEVSR------DGRYITTADGSSVKFWDANHFGLVKGYNM 226 (264)
Q Consensus 186 ~~~~v~~-----~~~s~------~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 226 (264)
....+.. ..... ++.....+.++.+.-.|..+++.+=.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 2111110 00111 22223333445566667777766555544
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=36 Score=30.50 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=16.9
Q ss_pred EEEEEECCCCcEEEEecCCCeEEEE
Q 024676 64 VWSCCLDANALFSASGSADFTAKLW 88 (264)
Q Consensus 64 V~~v~~~~~~~~l~s~s~D~~v~iw 88 (264)
|..+..++.|..++=.+-||.+.|.
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEE
Confidence 5556677788887766777765553
No 458
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.49 E-value=5.9 Score=38.42 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=63.2
Q ss_pred eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE
Q 024676 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (264)
Q Consensus 20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 98 (264)
.++.|+|..|+ ..+....|+.+++..+..... ...+. -...+.+++|+|.|+.++.|-..|++.=|...- +.+..
T Consensus 159 ~~~~wnP~vp~--n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ 234 (1405)
T KOG3630|consen 159 LKNVWNPLVPL--NSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSE 234 (1405)
T ss_pred ccccccCCccc--hhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc-ceeec
Confidence 47889998876 457788899999876543321 22222 345678999999999999999999888776432 22222
Q ss_pred ee-----cCCeEEEEEECCCCCEEEE
Q 024676 99 FE-----HKHIVRACAFSEDTHLLLT 119 (264)
Q Consensus 99 ~~-----~~~~v~~~~~~~~~~~l~s 119 (264)
++ ....|.+++|--.-.+++.
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEE
Confidence 21 1345778888665555553
No 459
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.48 E-value=44 Score=29.01 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=78.2
Q ss_pred EEEEECCCCcEEEEecCCCeEEEEeCCCCc-EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC----CCe
Q 024676 65 WSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----PPR 139 (264)
Q Consensus 65 ~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~----~~~ 139 (264)
..+...+++.+++.+.+-...+-||-.... ..........+..+.+.+++.+++++ .++.+..- ...+.. ...
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCccccccee
Confidence 345566777776666555444555532221 22233344567888899999887765 55554332 222211 111
Q ss_pred Eecc--CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe----cCCCCEEEEEEcCCCcEEEEeCCCcEEEE
Q 024676 140 EVGN--SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITTADGSSVKFW 213 (264)
Q Consensus 140 ~~~~--~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~i~iw 213 (264)
.... ....+..+.+.++ +.+++++. .|.+.... ..|+.-... ....+.+.+.|.++++.++.++++.|--|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d-~~~~a~G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSK-KEAWAAGG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCC-CcEEEEEC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 1111 1123666776654 45555554 46666543 444432211 12346788998888888888888766443
No 460
>PRK13684 Ycf48-like protein; Provisional
Probab=78.45 E-value=40 Score=28.44 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=79.3
Q ss_pred cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe--ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC
Q 024676 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP 138 (264)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~ 138 (264)
.+.++.+.+.+++.+++.+..-...+.+|- .++..... .....++.+.+.++++.++.+ ..+.+++=..+.++ ..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~-sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE-SW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC-cc
Confidence 456788999999877766654333333331 22222222 233567888899998877654 45666432222222 11
Q ss_pred eEecc----CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec----CCCCEEEEEEcCCCcEEEEeCCCcE
Q 024676 139 REVGN----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSV 210 (264)
Q Consensus 139 ~~~~~----~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~i 210 (264)
..... ....+..+.+.+++. +++++ .+|.+. .....++.-.... .....+.+.+..+++.++.+..+.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 11111 112456667666443 44444 446554 4445454322221 1234777777777777888877777
Q ss_pred EEEE
Q 024676 211 KFWD 214 (264)
Q Consensus 211 ~iwd 214 (264)
--|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6554
No 461
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=77.68 E-value=41 Score=28.25 Aligned_cols=12 Identities=25% Similarity=0.626 Sum_probs=8.3
Q ss_pred CCCEEEEecCCC
Q 024676 239 LGNIFIAGGEDM 250 (264)
Q Consensus 239 ~~~~~~~gs~d~ 250 (264)
++++++.||++.
T Consensus 321 ~~~iyv~GG~~~ 332 (346)
T TIGR03547 321 NNGVLLIGGENS 332 (346)
T ss_pred CCEEEEEeccCC
Confidence 467778887653
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.80 E-value=52 Score=32.82 Aligned_cols=136 Identities=15% Similarity=0.252 Sum_probs=77.1
Q ss_pred eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEE-CC-------CCcEEEEecCCCeEEEEeC----CCCcEE-----EEee
Q 024676 38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL-DA-------NALFSASGSADFTAKLWDA----LTGDEK-----HSFE 100 (264)
Q Consensus 38 s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~-~~-------~~~~l~s~s~D~~v~iwd~----~~~~~~-----~~~~ 100 (264)
+-|+.+.+|+.+++.-.+.+.+-+..|..|.. .| .=+++..-+.-.-|.|+-+ .++..- ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 46888999999997667777776677777653 22 2223322233344555533 222110 1111
Q ss_pred -cCCeEEEEEECCCCCEEEEeeCCCcEEEeeC----CCCC----C----------------CCeEeccCCCCeEEEEEec
Q 024676 101 -HKHIVRACAFSEDTHLLLTGGFEKILRIFDL----NRPD----A----------------PPREVGNSSGSIRTVAWLH 155 (264)
Q Consensus 101 -~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~----~~~~----~----------------~~~~~~~~~~~i~~~~~~~ 155 (264)
..-.|+++....+|+++++| .|+ .+|.+ ..+- . .....+.+..+|..++.-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID- 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID- 251 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec-
Confidence 24467888878888877765 555 44543 1110 0 000112334566666643
Q ss_pred CCCeEEEEeeCCCeEEEEECCC
Q 024676 156 SDQTILSSCTDSGGVRLWDARS 177 (264)
Q Consensus 156 ~~~~~~~~~~~d~~v~iwd~~~ 177 (264)
+...++-+-+..++|++||+.+
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 4456777777889999999976
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.40 E-value=30 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=26.2
Q ss_pred CCeEEEEEecCC-----CeEEEEeeCCCeEEEEECCCC
Q 024676 146 GSIRTVAWLHSD-----QTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 146 ~~i~~~~~~~~~-----~~~~~~~~~d~~v~iwd~~~~ 178 (264)
..+..++|+|.| +.+|++...++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 367889999854 457888888999999987754
No 464
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.93 E-value=58 Score=29.05 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=58.6
Q ss_pred EEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeE----EEEEECCCCCEEEEee--------------CCC----
Q 024676 67 CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV----RACAFSEDTHLLLTGG--------------FEK---- 124 (264)
Q Consensus 67 v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~s~~--------------~d~---- 124 (264)
+...++|.+++..+ ..++..|.. |+....+.....- ..+..-|+|++|+.+. .|.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 45667888776544 678888875 4444444433311 3456678888887666 111
Q ss_pred -----cEEEeeCCCCCCCCeE-------ec------cCC--CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe
Q 024676 125 -----ILRIFDLNRPDAPPRE-------VG------NSS--GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184 (264)
Q Consensus 125 -----~i~~~d~~~~~~~~~~-------~~------~~~--~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~ 184 (264)
.+..||+..--.+... .. ... -.++++.+.+.+..+++++-....|-..|.++++....+
T Consensus 230 d~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 230 DPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 2334554211000000 00 000 247888888878888877655558999999998887766
Q ss_pred cC
Q 024676 185 ET 186 (264)
Q Consensus 185 ~~ 186 (264)
..
T Consensus 310 g~ 311 (477)
T PF05935_consen 310 GP 311 (477)
T ss_dssp S-
T ss_pred CC
Confidence 43
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.16 E-value=47 Score=27.64 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCcEEEEecCC-----CeEEEEeCCCCc--EEEEeecCCeEEEEEECCCCCEEEEeeCCCc----EEEeeCCCCC
Q 024676 72 NALFSASGSAD-----FTAKLWDALTGD--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKI----LRIFDLNRPD 135 (264)
Q Consensus 72 ~~~~l~s~s~D-----~~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~----i~~~d~~~~~ 135 (264)
+++..+.|+.. ..+..||..+.+ .+..+.........+...++++.+.|+.++. +..||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 34544555531 356777876653 1111111111112222345677777776532 3467876543
No 466
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.90 E-value=50 Score=27.79 Aligned_cols=99 Identities=14% Similarity=0.241 Sum_probs=53.1
Q ss_pred eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce---EEee----eCCcCCEEEEEECCC----CcEEEEecC------
Q 024676 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTF----EGHKGAVWSCCLDAN----ALFSASGSA------ 81 (264)
Q Consensus 19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~---~~~~----~~H~~~V~~v~~~~~----~~~l~s~s~------ 81 (264)
-++|+|.| ||+++++ .+.|.|++.+ ..+.. +..+ .........++++|+ +.+.++.+.
T Consensus 4 P~~~a~~p---dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMAFLP---DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEEET---TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred ceEEEEeC---CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 35789996 8887665 6699999988 44433 2222 223456789999994 433333331
Q ss_pred CCeEEE--EeCCCC-------cEEE-Eee----cCCeEEEEEECCCCCEEEEeeC
Q 024676 82 DFTAKL--WDALTG-------DEKH-SFE----HKHIVRACAFSEDTHLLLTGGF 122 (264)
Q Consensus 82 D~~v~i--wd~~~~-------~~~~-~~~----~~~~v~~~~~~~~~~~l~s~~~ 122 (264)
+...+| |....+ +.+. ... ..+.-..+.|.|++.+.++.+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 122233 333222 1111 112 2355677999999977776543
No 467
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=73.23 E-value=34 Score=32.37 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=79.8
Q ss_pred EEEEecCCCeEEEEeCCCCc-EEEEee----cCCeEEEEEECCCCCEEEEeeCCCcEEEe--------eCCCCCCCCeEe
Q 024676 75 FSASGSADFTAKLWDALTGD-EKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIF--------DLNRPDAPPREV 141 (264)
Q Consensus 75 ~l~s~s~D~~v~iwd~~~~~-~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~--------d~~~~~~~~~~~ 141 (264)
.+..|..++.+-|+....+. ...+.+ ....+.++.+++.+ +..|.-|+++-.| |.+ + ...+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~e-p---~~~~ 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGE-P---NISI 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCC-C---cccc
Confidence 45667888888888765322 111111 12345555555443 4455556655444 322 1 1111
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe----cCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCC
Q 024676 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITTADGSSVKFWDANH 217 (264)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~ 217 (264)
..-..++...++.. . .+. ++.+|.|.++...+....+.. ++...|+.+.+..++-+++..++..+++++.++
T Consensus 623 ~~g~lPvrsla~~e--d-~~w-as~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQE--D-FVW-ASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred ccCCccccchhhhh--c-eee-eecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 11122444444432 2 232 345699999998876554433 344579999999889898888888888887776
Q ss_pred ceeeeEEe
Q 024676 218 FGLVKGYN 225 (264)
Q Consensus 218 ~~~~~~~~ 225 (264)
......++
T Consensus 699 l~hlqd~n 706 (925)
T KOG3522|consen 699 LWHLQDSN 706 (925)
T ss_pred cCCccccc
Confidence 65544443
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=72.85 E-value=56 Score=28.83 Aligned_cols=104 Identities=15% Similarity=0.021 Sum_probs=66.2
Q ss_pred CCeEEEEEeCCCCcEEE-eCCCCc-----eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC
Q 024676 30 DGFFLVSASKDSSPMLR-NGETGD-----WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH 103 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~-~~~~~~-----~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 103 (264)
.|.-|..++.||-|.-| |+..+. .++.|+--.++|..+.-..+.+-+++-+..|++..+-..+.+.+..-....
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence 46677888999987655 665432 234444444555555444455667888888888888765544332222233
Q ss_pred eEEEEEECCCCCEEEEeeCCCcEEEeeCCCC
Q 024676 104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRP 134 (264)
Q Consensus 104 ~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~ 134 (264)
....+.++|.+.++++- ..+.|+++.++..
T Consensus 359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred CcceeeeCcccchheee-cCCceEEEEecCC
Confidence 56678899998888753 3477899887654
No 469
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.28 E-value=20 Score=23.73 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=27.3
Q ss_pred EecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEe
Q 024676 78 SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120 (264)
Q Consensus 78 s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 120 (264)
.+..+|.+--||..+++.......=..-+.++.++++..++.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 3455667777888888654444434467889999999876654
No 470
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=71.96 E-value=50 Score=26.54 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=78.4
Q ss_pred CeeeeEeccCCCCCeEEEEEe-CCCCcEEEeCCCCceEEe-eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe-CCCCc
Q 024676 18 PVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWD-ALTGD 94 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s-~d~~v~i~~~~~~~~~~~-~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd-~~~~~ 94 (264)
.+...+.+ ++|+.++... .++.-.+|-...+..... +.+. ....-.|++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS---~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVS---PDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEEC---CCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 44555556 4887666555 233334444333332222 2333 455567888877666666666667764 33332
Q ss_pred EEE-Ee--ecC-CeEEEEEECCCCCEEEEee---CCCcEEEeeCCCC-CC-C-----CeEec-cCCCCeEEEEEecCCCe
Q 024676 95 EKH-SF--EHK-HIVRACAFSEDTHLLLTGG---FEKILRIFDLNRP-DA-P-----PREVG-NSSGSIRTVAWLHSDQT 159 (264)
Q Consensus 95 ~~~-~~--~~~-~~v~~~~~~~~~~~l~s~~---~d~~i~~~d~~~~-~~-~-----~~~~~-~~~~~i~~~~~~~~~~~ 159 (264)
... .. ... ..|..+.++|++..++... .++.+.+--+... .. . ..... .....+..++|.+++..
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 211 11 112 2799999999999888655 2455655443211 11 1 11111 22356788999987665
Q ss_pred EEEEeeCCC
Q 024676 160 ILSSCTDSG 168 (264)
Q Consensus 160 ~~~~~~~d~ 168 (264)
++++...+.
T Consensus 180 ~V~~~~~~~ 188 (253)
T PF10647_consen 180 VVLGRSAGG 188 (253)
T ss_pred EEEeCCCCC
Confidence 555544444
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.77 E-value=73 Score=27.90 Aligned_cols=143 Identities=6% Similarity=0.009 Sum_probs=77.0
Q ss_pred CCeEEEEEeCCCCcEEEeCCCCceE---Eeee-CCcCCEEEEEECC----CCcEEEEecCCCeEEEEeCCC--Cc-----
Q 024676 30 DGFFLVSASKDSSPMLRNGETGDWI---GTFE-GHKGAVWSCCLDA----NALFSASGSADFTAKLWDALT--GD----- 94 (264)
Q Consensus 30 ~g~~l~t~s~d~~v~i~~~~~~~~~---~~~~-~H~~~V~~v~~~~----~~~~l~s~s~D~~v~iwd~~~--~~----- 94 (264)
+...++.||..|.++|++...+... --++ .-+.+|..++... .....+.-=..+.+-+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4578999999999999998665421 0111 1246887776532 222223335567788887622 11
Q ss_pred ---EEEEeecC--CeEEEEEECCC-----CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676 95 ---EKHSFEHK--HIVRACAFSED-----THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (264)
Q Consensus 95 ---~~~~~~~~--~~v~~~~~~~~-----~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (264)
....++|. .....+++.|- ...+..-+.||.+.+|+-+.-- .....+.---...+++++..+.+++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPgPl~Y~~~tDsfvt~- 192 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPGPLCYCPRTDSFVTA- 192 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCcCeEEeecCCEEEEe-
Confidence 12223332 22333334332 3567778999999999865321 11111111111224566666665554
Q ss_pred eCCCeEEEEEC
Q 024676 165 TDSGGVRLWDA 175 (264)
Q Consensus 165 ~~d~~v~iwd~ 175 (264)
+.+..+.-|..
T Consensus 193 sss~~l~~Yky 203 (418)
T PF14727_consen 193 SSSWTLECYKY 203 (418)
T ss_pred cCceeEEEecH
Confidence 34467777753
No 472
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=66.69 E-value=16 Score=19.67 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=13.3
Q ss_pred CCcEEEEeCCCcEEEEECC
Q 024676 198 DGRYITTADGSSVKFWDAN 216 (264)
Q Consensus 198 ~~~~l~~~~~~~i~iwd~~ 216 (264)
++..++++.++.+.-+|.+
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 5666677778888888865
No 473
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=65.85 E-value=91 Score=27.13 Aligned_cols=106 Identities=8% Similarity=-0.009 Sum_probs=56.4
Q ss_pred cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-----EEEEeec---CCeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----EKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (264)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 132 (264)
...+.++.+.+++..++.+ .+|.+ +|....+. ....... ...+..+.+.+++..++ ++..|.+.... +
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-C
Confidence 4567888899888877655 45544 34434443 1222222 23478888888777655 45666655443 2
Q ss_pred CCCCCCeEe---ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676 133 RPDAPPREV---GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (264)
Q Consensus 133 ~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw 173 (264)
.++ ..... ..-...+..+.|.+++.- ++++ ++|.|.-|
T Consensus 356 ~G~-tW~~~~~~~~~~~~ly~v~f~~~~~g-~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGK-SWKRDKGADNIAANLYSVKFFDDKKG-FVLG-NDGVLLRY 396 (398)
T ss_pred CCc-ceeEccccCCCCcceeEEEEcCCCce-EEEe-CCcEEEEe
Confidence 222 22221 122345677777665443 3343 44766544
No 474
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=63.46 E-value=89 Score=26.21 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred EeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC
Q 024676 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207 (264)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 207 (264)
+.|+.+++....-+....++-+ .++.+-+.-+..|++.-+|.++|+.............+.|. |.++..+-.
T Consensus 189 vidv~s~evl~~GLsmPhSPRW------hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 189 VIDIPSGEVVASGLSMPHSPRW------YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EEEeCCCCEEEcCccCCcCCcE------eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Q ss_pred Cc---------------------EEEEECCCceeeeEEecCCCCcee
Q 024676 208 SS---------------------VKFWDANHFGLVKGYNMPCNTESA 233 (264)
Q Consensus 208 ~~---------------------i~iwd~~~~~~~~~~~~~~~~~~~ 233 (264)
.. +.+.|+++++.+..+.+......+
T Consensus 261 k~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~Ei 307 (335)
T TIGR03032 261 KLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEI 307 (335)
T ss_pred cccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEE
No 475
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=63.29 E-value=65 Score=27.11 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=43.6
Q ss_pred eecceEeeccCCCeeeeEeccCC--C--CCeEEEEEeCCCCcEEEeCCCC-ce--EEe-eeCCcCCEEEEEECCCCcEEE
Q 024676 6 VAVPLVCHGHSRPVVDLFYSPIT--P--DGFFLVSASKDSSPMLRNGETG-DW--IGT-FEGHKGAVWSCCLDANALFSA 77 (264)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~~~~~~--~--~g~~l~t~s~d~~v~i~~~~~~-~~--~~~-~~~H~~~V~~v~~~~~~~~l~ 77 (264)
+..|.....|...+..+.|-+-. | .|.++++.-..+.|.....+.+ +. ... +......+..+++.|||.+.+
T Consensus 242 ~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 242 FVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp S---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred cCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 44566655544555555555321 1 5677777666556655555433 22 122 334555899999999998877
Q ss_pred EecCCCeE
Q 024676 78 SGSADFTA 85 (264)
Q Consensus 78 s~s~D~~v 85 (264)
+-..+|.|
T Consensus 322 ~~d~~G~i 329 (331)
T PF07995_consen 322 SDDSDGKI 329 (331)
T ss_dssp EE-TTTTE
T ss_pred EECCCCeE
Confidence 77677765
No 476
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=63.25 E-value=1.2e+02 Score=29.31 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=49.6
Q ss_pred CeEEEEeCCCCcEEEE-eecCCeEEEEEECCCCCEEEE-eeCCC-----cEEEeeCCCCCCCCeEeccCCCCeEEEEEec
Q 024676 83 FTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLT-GGFEK-----ILRIFDLNRPDAPPREVGNSSGSIRTVAWLH 155 (264)
Q Consensus 83 ~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s-~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 155 (264)
+.+.+=|......... +++..++..=.|+|+++.|+- .+.++ .|.+-|+++.......+......|.--..+.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e 408 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE 408 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence 3677777766665544 778888988899999999987 55554 3677787765443333333344443333344
Q ss_pred CCCeEEE
Q 024676 156 SDQTILS 162 (264)
Q Consensus 156 ~~~~~~~ 162 (264)
++.+.++
T Consensus 409 ~gdt~iv 415 (912)
T TIGR02171 409 NGDTVIV 415 (912)
T ss_pred CCCeEEE
Confidence 5555433
No 477
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.88 E-value=1e+02 Score=26.28 Aligned_cols=189 Identities=17% Similarity=0.138 Sum_probs=93.0
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC---eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCC
Q 024676 71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS 147 (264)
Q Consensus 71 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 147 (264)
.+++. ..+..||.+.-.|..++..+....... .+..-....+++ ++.++.++.+..+|.++++..........-.
T Consensus 67 ~dg~v-~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGTV-YVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCeE-EEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 34544 444778888888888887655433321 111111122555 6778888878888876666554443222000
Q ss_pred eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC----EEEEEEcCCCcEEEEeC--CCcEEEEECCCceee
Q 024676 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP----VTSAEVSRDGRYITTAD--GSSVKFWDANHFGLV 221 (264)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~ 221 (264)
+..-... .+..++.. ++++.+.-.|..+|+.........+ +.......++..++... ++.+.=.|.+++...
T Consensus 145 ~~~~~v~-~~~~v~~~-s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVV-GDGTVYVG-TDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEE-cCcEEEEe-cCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111111 23333333 3668999999999988766544321 11111123344444433 333444455555443
Q ss_pred eEEec--CCCCce---eeEcCC----CCCEEEEecCCCeEEEEEcCcceee
Q 024676 222 KGYNM--PCNTES---ASLEPK----LGNIFIAGGEDMWVHVFDFHTGEQI 263 (264)
Q Consensus 222 ~~~~~--~~~~~~---~~~~~~----~~~~~~~gs~d~~v~vwd~~~g~~i 263 (264)
-..+. ...... ...... .+.-+..++.++.+...|..+|+++
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceE
Confidence 33211 111000 000000 0122355666777888888888765
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=61.66 E-value=31 Score=32.41 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.3
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (264)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~ 132 (264)
....+..+.-+|.++-++.++.|+.|.+|+.-
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~ 44 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFI 44 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeec
Confidence 34567788889999999999999999999963
No 479
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=61.41 E-value=19 Score=17.75 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=14.3
Q ss_pred EEEEECCCCcEEEEecCCCeEEE
Q 024676 65 WSCCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 65 ~~v~~~~~~~~l~s~s~D~~v~i 87 (264)
..+++++++...++=+..+.|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45666667766666666665554
No 480
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.89 E-value=1.5e+02 Score=27.99 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=36.0
Q ss_pred eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 38 s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
+.--.|+|++.. |..++.+--..+.+..+.|+.+..++ .-..||++.++++...
T Consensus 61 ~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 61 SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGE 114 (829)
T ss_pred ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEE-EEeccceEEEeecchh
Confidence 333457777764 55554443222367789999887665 5678999999997543
No 481
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=59.91 E-value=25 Score=18.61 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=20.7
Q ss_pred CCCCeEEEEEecCCCeEEEEeeCC--CeEEEE
Q 024676 144 SSGSIRTVAWLHSDQTILSSCTDS--GGVRLW 173 (264)
Q Consensus 144 ~~~~i~~~~~~~~~~~~~~~~~~d--~~v~iw 173 (264)
..+......|+|++..++-++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567778999998887777776 666555
No 482
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=59.74 E-value=11 Score=34.32 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=52.0
Q ss_pred cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC-eEEEEeCCCCcEEEE-----e-ecC-----CeEEEEEE
Q 024676 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-TAKLWDALTGDEKHS-----F-EHK-----HIVRACAF 110 (264)
Q Consensus 43 v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~-----~-~~~-----~~v~~~~~ 110 (264)
+.+-|..+...+..|+.|+.++..++|.+.+..+++++-.| .|.++.+..-.+... + .+. ..+..++|
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicf 376 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICF 376 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhh
Confidence 45556666667788999999999999999999998887665 454454332211111 1 010 01234566
Q ss_pred CCCCCEEEEeeCCCc
Q 024676 111 SEDTHLLLTGGFEKI 125 (264)
Q Consensus 111 ~~~~~~l~s~~~d~~ 125 (264)
+....+...++-+|.
T Consensus 377 s~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 377 SEVSTIRTAGSCEGE 391 (788)
T ss_pred hhhcceEeecccCCC
Confidence 666777776665554
No 483
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.19 E-value=87 Score=24.66 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=86.6
Q ss_pred eeEeccCCCCCeEEEEEeCCC--CcEEEeCCCCceEEeeeCCcCCEEE--EEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676 21 DLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGAVWS--CCLDANALFSASGSADFTAKLWDALTGDEK 96 (264)
Q Consensus 21 ~~~~~~~~~~g~~l~t~s~d~--~v~i~~~~~~~~~~~~~~H~~~V~~--v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 96 (264)
.+.+. +|.++.+.+.=| .|++|++.+|+.+..-.--...+.. +.-..|.-+.. .-.||..-.+|..+-+.+
T Consensus 50 GL~~~----~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~L-Tw~egvaf~~d~~t~~~l 124 (262)
T COG3823 50 GLEYL----DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQL-TWKEGVAFKYDADTLEEL 124 (262)
T ss_pred ceeee----CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEE-EeccceeEEEChHHhhhh
Confidence 45555 566777766554 4788999988754321111111211 11111122222 245677777887776666
Q ss_pred EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC----CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676 97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP----PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (264)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i 172 (264)
-.+.-+..=..++.. ++.|+.+....+++.-|-++-... ....+..-..++.+.|. ++.+.+-.-....|-.
T Consensus 125 g~~~y~GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~r 200 (262)
T COG3823 125 GRFSYEGEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIAR 200 (262)
T ss_pred cccccCCcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEE
Confidence 666555555555443 333444443445555443321111 11112222334444454 2334443333445666
Q ss_pred EECCCCceeEEecCC-------------CCEEEEEEcCCC-cEEEEe
Q 024676 173 WDARSGKIVQTLETK-------------SPVTSAEVSRDG-RYITTA 205 (264)
Q Consensus 173 wd~~~~~~~~~~~~~-------------~~v~~~~~s~~~-~~l~~~ 205 (264)
-|..+|+++..+... +..+.+++.|++ +++.++
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 688888877665432 235667777776 555554
No 484
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=56.87 E-value=1.2e+02 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=16.1
Q ss_pred CCeEEEEEeCC-----------CCcEEEeCCCCceEE
Q 024676 30 DGFFLVSASKD-----------SSPMLRNGETGDWIG 55 (264)
Q Consensus 30 ~g~~l~t~s~d-----------~~v~i~~~~~~~~~~ 55 (264)
+++..+.|+.+ ..+..||..++++..
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~ 99 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQK 99 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEec
Confidence 45555666653 246668888887654
No 485
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=56.51 E-value=1.1e+02 Score=25.14 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=44.2
Q ss_pred EEEEEEcCCCcEEEE--eC-----------CCcEEEEECCCceeeeEEecCCCCce-------eeEcCCC-----CCEEE
Q 024676 190 VTSAEVSRDGRYITT--AD-----------GSSVKFWDANHFGLVKGYNMPCNTES-------ASLEPKL-----GNIFI 244 (264)
Q Consensus 190 v~~~~~s~~~~~l~~--~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~-----~~~~~ 244 (264)
|..+...+++++-+. +. .-.|..||+++.+.+++|.++..... +...... +..++
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 566677777766442 21 12578899999999999988644322 2232211 34566
Q ss_pred EecCCCeEEEEEcCccee
Q 024676 245 AGGEDMWVHVFDFHTGEQ 262 (264)
Q Consensus 245 ~gs~d~~v~vwd~~~g~~ 262 (264)
+=+...-+.|+|+.+|+.
T Consensus 83 tD~~~~glIV~dl~~~~s 100 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKS 100 (287)
T ss_dssp EETTTCEEEEEETTTTEE
T ss_pred eCCCcCcEEEEEccCCcE
Confidence 666667899999988764
No 486
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=55.18 E-value=1.8 Score=37.87 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=86.7
Q ss_pred eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEE-Ee
Q 024676 22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKH-SF 99 (264)
Q Consensus 22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~-~~ 99 (264)
.+|-| .+++ |+.+..+..+..||-. ++..-.+. ..+....++|+.++..+ +-+-..+.+.+||+.+..... ..
T Consensus 40 ~~w~~--e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 40 HRWRP--EGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred eeEec--CCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 34444 3444 7788888888888864 33322222 23344567787777554 446667899999986542111 11
Q ss_pred ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (264)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd 174 (264)
.-.+.-..+.|++....++.+-..+.+.+++..+.+... ..+.+...+.+.++.+.+. .+.++.|..+.+-.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~RRgtq~av~lEd~--vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQRRGTQIAVTLEDY--VILCDCDNTLSVTT 186 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hhcccccceeEEEecccce--eeecCcHHHHHHhh
Confidence 111112236788888888888888999999976654432 2244666788888887664 33444445544433
No 487
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.97 E-value=1.9e+02 Score=27.35 Aligned_cols=173 Identities=12% Similarity=0.131 Sum_probs=81.0
Q ss_pred CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee----eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF----EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (264)
Q Consensus 18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~----~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~ 93 (264)
++-.+.|+ +...|+.-..||++++|+.. |+.+..+ +.-...|..+.+..+|-.+.+.+.+ .+.+-+....
T Consensus 85 ~lI~mgWs----~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~-v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWS----DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQ-VILINGVEEP 158 (829)
T ss_pred Ceeeeccc----CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEecCCc-EEEEcCCCcc
Confidence 55578888 44567888999999999875 4433332 2223345666666677666665433 3333333221
Q ss_pred cEEEEeec--CC--eEEEEEECCC---CCEEEEee-CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676 94 DEKHSFEH--KH--IVRACAFSED---THLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (264)
Q Consensus 94 ~~~~~~~~--~~--~v~~~~~~~~---~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (264)
.. ...+. .. +-.+....++ ...++-.. ..+ ..++..+........+....+.+..+..++..+++ +--.
T Consensus 159 ~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~l-aLyt 235 (829)
T KOG2280|consen 159 KL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFL-ALYT 235 (829)
T ss_pred hh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceE-EEEe
Confidence 11 11110 00 1011111111 22222111 000 01222222222222222233566777777665554 3344
Q ss_pred CCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCC
Q 024676 166 DSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDG 199 (264)
Q Consensus 166 ~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~ 199 (264)
+.|.|.+-+....++.-.++ .+.+...++|..|.
T Consensus 236 ~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 236 ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 56888888777666554443 23333345555443
No 488
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=52.99 E-value=19 Score=34.41 Aligned_cols=163 Identities=10% Similarity=0.090 Sum_probs=87.9
Q ss_pred eccCCCeeeeEeccCC-CCCeEEEEEeCCCCcEEEeCCC--CceEEee-----eCCcCCEEEEE---ECCCCcEEEEecC
Q 024676 13 HGHSRPVVDLFYSPIT-PDGFFLVSASKDSSPMLRNGET--GDWIGTF-----EGHKGAVWSCC---LDANALFSASGSA 81 (264)
Q Consensus 13 ~~h~~~v~~~~~~~~~-~~g~~l~t~s~d~~v~i~~~~~--~~~~~~~-----~~H~~~V~~v~---~~~~~~~l~s~s~ 81 (264)
+|-++.|..|.|.... |-+.. .-|...||++.. |+....+ ......+.-|. |.+...++..+-.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~~-----~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGRR-----LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred hcCCCCcccccccccCChHHHH-----HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 5778888889887643 33332 224567887653 4322222 11222333333 4456677888888
Q ss_pred CCeEEEEeCCCCcEEEEeecCC-----------eEEEEEECCCCCEEEEeeCCCcEEEeeCCC-CCCCC---eEeccCC-
Q 024676 82 DFTAKLWDALTGDEKHSFEHKH-----------IVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPP---REVGNSS- 145 (264)
Q Consensus 82 D~~v~iwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~-~~~~~---~~~~~~~- 145 (264)
++++++-+...........|.. .+..-..+|+|+.+++++.||.++.|.+-- +.... ....+|.
T Consensus 204 ~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 204 GGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred CCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 8999886654432111011222 112223799999999999999999987632 11111 1223333
Q ss_pred CCeEEEEEecCCC----------eEEEEeeCCCeEEEEECCCCcee
Q 024676 146 GSIRTVAWLHSDQ----------TILSSCTDSGGVRLWDARSGKIV 181 (264)
Q Consensus 146 ~~i~~~~~~~~~~----------~~~~~~~~d~~v~iwd~~~~~~~ 181 (264)
++..|.- +++.. ..+.+...++.+++|.-..-+|+
T Consensus 284 ~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2222221 33221 23334444567888887666665
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=52.45 E-value=1.4e+02 Score=24.87 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=13.7
Q ss_pred CCCEEEEeeC-----CCcEEEeeCCCCC
Q 024676 113 DTHLLLTGGF-----EKILRIFDLNRPD 135 (264)
Q Consensus 113 ~~~~l~s~~~-----d~~i~~~d~~~~~ 135 (264)
++++.+.|+. ...+..||+.+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 4566666664 2346778876554
No 490
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=52.21 E-value=1.4e+02 Score=24.98 Aligned_cols=169 Identities=11% Similarity=0.089 Sum_probs=87.9
Q ss_pred CCeeeeEeccCCC-----CC----eEEEEEeCCCCcEEEeCCCCce-----EEeee-CCcCCEEE-EEEC--CCCcEEE-
Q 024676 17 RPVVDLFYSPITP-----DG----FFLVSASKDSSPMLRNGETGDW-----IGTFE-GHKGAVWS-CCLD--ANALFSA- 77 (264)
Q Consensus 17 ~~v~~~~~~~~~~-----~g----~~l~t~s~d~~v~i~~~~~~~~-----~~~~~-~H~~~V~~-v~~~--~~~~~l~- 77 (264)
...+.+.|+..+. .+ ..++.++.||+|.=|...-+.. .-.+. +-.+.|+. +++. ..+.+|.
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 3456777774221 01 1246778899999997643322 11222 22345532 4443 2244443
Q ss_pred EecCCCeEEEEeCCCCcEE-------------------EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC
Q 024676 78 SGSADFTAKLWDALTGDEK-------------------HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP 138 (264)
Q Consensus 78 s~s~D~~v~iwd~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~ 138 (264)
+-=..++|.++|-.-.... +.+...-.|+...-.++.+.=+.+..-+.|-+||+.. ....
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~ 235 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLR 235 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEE
Confidence 3335678888885332211 0000111233333344443334444557888998753 3222
Q ss_pred eE-eccCCCCeEEEEEec-----CCCeEEEEeeCCCeEEEEECCCCceeEEecC
Q 024676 139 RE-VGNSSGSIRTVAWLH-----SDQTILSSCTDSGGVRLWDARSGKIVQTLET 186 (264)
Q Consensus 139 ~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~ 186 (264)
+. ....-...+.++.-| -.+.+|+.-..||+|..||..+++.+..+..
T Consensus 236 r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 236 RVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred EeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 11 111112335555433 2356888888899999999999988776654
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=52.19 E-value=1.5e+02 Score=25.34 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=9.2
Q ss_pred eEEEEECCCCce
Q 024676 169 GVRLWDARSGKI 180 (264)
Q Consensus 169 ~v~iwd~~~~~~ 180 (264)
.+.+||..+.+-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 588899888764
No 492
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.46 E-value=2.8e+02 Score=28.15 Aligned_cols=134 Identities=13% Similarity=0.184 Sum_probs=70.7
Q ss_pred eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe--------cCCCeEEEEeeCCCeEEEEECC----CCcee-----EE
Q 024676 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--------HSDQTILSSCTDSGGVRLWDAR----SGKIV-----QT 183 (264)
Q Consensus 121 ~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~d~~v~iwd~~----~~~~~-----~~ 183 (264)
+-|+.+.+|+.+++.. ..........|..+... +.=+++++.+.. -.|-|+-+. ++..- ..
T Consensus 96 TiDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 4678899999987432 22333333344444332 222344444443 456665432 22110 11
Q ss_pred ec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC----C---ceeeeEEec---------------C---C-CCceeeEc
Q 024676 184 LE-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN----H---FGLVKGYNM---------------P---C-NTESASLE 236 (264)
Q Consensus 184 ~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~----~---~~~~~~~~~---------------~---~-~~~~~~~~ 236 (264)
+. ....|+++....+|+.+.++.|+ .+|.+. . ++..+.+.. + . ....+...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 11 23468899989999998888777 555542 1 111111111 1 1 11122222
Q ss_pred CCCCCEEEEecCCCeEEEEEcCc
Q 024676 237 PKLGNIFIAGGEDMWVHVFDFHT 259 (264)
Q Consensus 237 ~~~~~~~~~gs~d~~v~vwd~~~ 259 (264)
+...++.+-++-+.|++||...
T Consensus 252 -~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 -NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -cccceeeeeccCceEEEEEccC
Confidence 2345778889999999999865
No 493
>PLN02193 nitrile-specifier protein
Probab=49.83 E-value=1.9e+02 Score=25.74 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=27.5
Q ss_pred CcEEEEECCCcee--eeEE-ecCCCCceeeEcCCCCCEEEEecCCC--------------eEEEEEcCcc
Q 024676 208 SSVKFWDANHFGL--VKGY-NMPCNTESASLEPKLGNIFIAGGEDM--------------WVHVFDFHTG 260 (264)
Q Consensus 208 ~~i~iwd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~gs~d~--------------~v~vwd~~~g 260 (264)
..+.+||+.+.+= +... ..+..........-.+++++.||.+. .+.+||+.+.
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 4688999876542 2211 01111111111112467888888642 4778887655
No 494
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=48.21 E-value=2.2e+02 Score=27.19 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCcceeec---ceEeeccCCCeeeeEeccC-CCCC--eEEEEEeCCCCc-EEEeCCCC----c-eEEeee--CCcCCEEE
Q 024676 1 MDKRKVAV---PLVCHGHSRPVVDLFYSPI-TPDG--FFLVSASKDSSP-MLRNGETG----D-WIGTFE--GHKGAVWS 66 (264)
Q Consensus 1 ~~~~~~~~---~~~~~~h~~~v~~~~~~~~-~~~g--~~l~t~s~d~~v-~i~~~~~~----~-~~~~~~--~H~~~V~~ 66 (264)
||+.-.+. |...+........|+=+-. ..++ ..|..|+.+|+| ++....+. + ++.+++ .+..+|..
T Consensus 389 M~~~V~p~~~~P~l~~~~~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~ 468 (737)
T KOG3611|consen 389 MDEAVPPVHGRPLLVKTGDYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRS 468 (737)
T ss_pred cccccCCCCCCceEEecccceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeE
Confidence 55554444 6555433445555544421 1334 356788999986 33333221 1 344443 25578999
Q ss_pred EEECCCCcEEEEecCCCeEEE
Q 024676 67 CCLDANALFSASGSADFTAKL 87 (264)
Q Consensus 67 v~~~~~~~~l~s~s~D~~v~i 87 (264)
+..++....|..|+..+.++|
T Consensus 469 m~Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 469 MQLSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred EEecccCCeEEEEccCcEEEe
Confidence 999998888888999987765
No 495
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=47.37 E-value=1.8e+02 Score=27.90 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=51.4
Q ss_pred EEEECCCCCEEEEeeCCCc-----EEEeeCCC---CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676 107 ACAFSEDTHLLLTGGFEKI-----LRIFDLNR---PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (264)
Q Consensus 107 ~~~~~~~~~~l~s~~~d~~-----i~~~d~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~ 178 (264)
.+.|-|+|..+++-..|++ +..+..+. |+.. ......-.....+|+-.. .+++.+ ..+.|++|-...-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~--lr~~~dEk~~~~~wn~~s-~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFD--LRVGCDEKAFLENWNLLS-TVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcc--ccCCchhhhhhhhhhHHH-HHHHHh-hcceEEEEEccce
Confidence 4889999999998665543 44444321 2211 111112223444554322 233333 3378999987654
Q ss_pred ceeEEecCC-CCEEEEEEcCCCcE-EEEeCCCcEEE
Q 024676 179 KIVQTLETK-SPVTSAEVSRDGRY-ITTADGSSVKF 212 (264)
Q Consensus 179 ~~~~~~~~~-~~v~~~~~s~~~~~-l~~~~~~~i~i 212 (264)
.-....+.. ..+.-+.|+|.... +...+.+.|..
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~ 362 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILR 362 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCcEEEEecCCeEEE
Confidence 332222222 23566788887643 44444455543
No 496
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=46.24 E-value=2.8e+02 Score=26.63 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred eccCCCCCeEEEEEeCCCCcEEEe-CCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ec
Q 024676 24 YSPITPDGFFLVSASKDSSPMLRN-GETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EH 101 (264)
Q Consensus 24 ~~~~~~~g~~l~t~s~d~~v~i~~-~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~ 101 (264)
|.| ..+.+|+.|..-..-..-. ...-..+..-.|..+.+..++.-.....-.....+..+++--........-. ..
T Consensus 1 ~DP--~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~ 78 (765)
T PF10214_consen 1 YDP--TVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDD 78 (765)
T ss_pred CCC--CcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCC
Q ss_pred CCeEEEEEEC------CCCCEEEEeeCCCcEEEee------CCCCCCCCeEeccC-----------CCCeEEEEEecCCC
Q 024676 102 KHIVRACAFS------EDTHLLLTGGFEKILRIFD------LNRPDAPPREVGNS-----------SGSIRTVAWLHSDQ 158 (264)
Q Consensus 102 ~~~v~~~~~~------~~~~~l~s~~~d~~i~~~d------~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~ 158 (264)
..||..+++. .....++..=....+.|+. +.........+... ..+...++|+|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Q ss_pred eEEEEeeCCCeEEEEEC------CCCceeEEecCCCCE------E----EEEEcCCCcEEEEeCCCcEEEEECCCc
Q 024676 159 TILSSCTDSGGVRLWDA------RSGKIVQTLETKSPV------T----SAEVSRDGRYITTADGSSVKFWDANHF 218 (264)
Q Consensus 159 ~~~~~~~~d~~v~iwd~------~~~~~~~~~~~~~~v------~----~~~~s~~~~~l~~~~~~~i~iwd~~~~ 218 (264)
..++.....|...|||+ ++..........+.+ . .+.|.++...|...+...+.++|+++.
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESN 234 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCC
No 497
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.14 E-value=1.7e+02 Score=24.12 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=51.2
Q ss_pred eEEEEeCCCCcEEEEe--ecCCeEEEEEECCCCCEEEEee------CCCcEEEeeCCCCCCCCeEecc-----CCCCeEE
Q 024676 84 TAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGG------FEKILRIFDLNRPDAPPREVGN-----SSGSIRT 150 (264)
Q Consensus 84 ~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~------~d~~i~~~d~~~~~~~~~~~~~-----~~~~i~~ 150 (264)
.|.+||..+.+ ...+ .....|+.+.|..+.+++++|. ....+-.||+.+... ..... -.+++..
T Consensus 17 ~lC~yd~~~~q-W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 17 GLCLYDTDNSQ-WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred EEEEEECCCCE-eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEEE
Confidence 48889976543 1222 1346799999987777777764 344577888876543 22222 2467777
Q ss_pred EEEecCCC-eEEEEee-CCC--eEEEEECCC
Q 024676 151 VAWLHSDQ-TILSSCT-DSG--GVRLWDARS 177 (264)
Q Consensus 151 ~~~~~~~~-~~~~~~~-~d~--~v~iwd~~~ 177 (264)
+.....+. .+.+.+. .++ .|.-||=.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 66543333 3433222 223 466676443
No 498
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=45.96 E-value=1.2e+02 Score=24.56 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcC-----CCcEEEEeCCCcEEE
Q 024676 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR-----DGRYITTADGSSVKF 212 (264)
Q Consensus 155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~~~i~i 212 (264)
++....++.|.+++.|.|.|.+....+..++..+....+..+. |.+.+++..||.|.+
T Consensus 192 ~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 192 EDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred CCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
No 499
>PLN02153 epithiospecifier protein
Probab=45.64 E-value=1.8e+02 Score=24.36 Aligned_cols=22 Identities=32% Similarity=0.075 Sum_probs=14.9
Q ss_pred CCCEEEEecCC--------------CeEEEEEcCcc
Q 024676 239 LGNIFIAGGED--------------MWVHVFDFHTG 260 (264)
Q Consensus 239 ~~~~~~~gs~d--------------~~v~vwd~~~g 260 (264)
.+++++.||.. ..++.||+.+.
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 46788888862 25778887654
No 500
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=45.46 E-value=60 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=26.6
Q ss_pred CeeeeEecc--CCCC-CeEEEEEeCCCCcEEEeCC
Q 024676 18 PVVDLFYSP--ITPD-GFFLVSASKDSSPMLRNGE 49 (264)
Q Consensus 18 ~v~~~~~~~--~~~~-g~~l~t~s~d~~v~i~~~~ 49 (264)
.|.+++|+| ..++ +++|++.+.++.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 688999999 4344 6899999999999999765
Done!