Query 024677
Match_columns 264
No_of_seqs 173 out of 628
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 1.7E-34 5.9E-39 241.5 18.2 125 73-203 11-135 (147)
2 1z9l_A Vesicle-associated memb 100.0 7.8E-34 2.7E-38 231.7 17.7 121 73-199 7-127 (128)
3 1wic_A Hypothetical protein ri 100.0 9.2E-35 3.1E-39 245.1 11.8 129 73-210 15-148 (152)
4 1msp_A MSP, major sperm protei 100.0 7.4E-30 2.5E-34 208.8 16.7 118 74-199 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 3.7E-27 1.3E-31 189.3 14.2 104 77-197 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 2.8E-26 9.4E-31 186.5 15.5 105 76-197 10-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.1 1.7E-05 5.6E-10 63.0 10.0 65 75-143 24-89 (122)
8 2e6j_A Hydin protein; PAPD, st 97.8 7.3E-05 2.5E-09 57.6 8.1 68 75-143 8-79 (112)
9 3qbt_B Inositol polyphosphate 97.8 0.00017 5.6E-09 59.3 10.1 69 75-144 25-100 (140)
10 3qis_A Inositol polyphosphate 97.2 0.0013 4.4E-08 61.6 9.8 69 75-144 28-103 (366)
11 2qsv_A Uncharacterized protein 96.2 0.021 7.2E-07 49.3 9.0 66 76-143 2-68 (220)
12 2qsv_A Uncharacterized protein 95.0 0.1 3.5E-06 45.0 8.9 66 75-143 118-184 (220)
13 3q48_A Chaperone CUPB2; IG fol 88.8 8.7 0.0003 34.1 13.4 109 76-201 29-147 (257)
14 2co7_B SAFB chaperone, putativ 82.2 9 0.00031 33.2 9.8 64 76-143 13-81 (221)
15 2xg5_A PAPD, chaperone protein 78.5 32 0.0011 29.6 14.3 63 77-143 2-72 (218)
16 1klf_A FIMC chaperone, chapero 78.3 31 0.0011 29.4 12.5 109 77-201 2-118 (205)
17 1yew_A Particulate methane mon 76.7 7.9 0.00027 36.8 8.1 69 73-143 246-335 (382)
18 3jt0_A Lamin-B1; structural ge 76.0 6.5 0.00022 32.4 6.6 40 98-138 39-84 (144)
19 4djm_A DRAB; chaperone, PILI; 75.1 23 0.00078 31.1 10.3 64 76-143 23-91 (239)
20 3rfr_A PMOB; membrane, oxidore 74.7 7.7 0.00026 37.2 7.5 65 75-143 282-367 (419)
21 2r39_A FIXG-related protein; s 74.7 12 0.0004 28.9 7.5 61 84-144 21-83 (118)
22 4ay0_A Chaperone protein CAF1M 74.1 32 0.0011 29.7 10.9 109 76-201 13-128 (218)
23 1l4i_A SFAE protein; periplasm 72.7 44 0.0015 28.4 13.3 111 77-202 2-119 (206)
24 3idu_A Uncharacterized protein 62.8 19 0.00066 28.7 6.5 51 91-142 31-82 (127)
25 3hs8_A Adaptor protein complex 62.6 16 0.00055 32.8 6.7 57 92-148 67-130 (273)
26 2g30_A AP-2 complex subunit be 61.7 13 0.00046 33.0 6.0 64 74-143 41-110 (258)
27 3gfu_C Chaperone protein FAEE; 58.1 94 0.0032 27.0 13.9 105 77-200 2-113 (224)
28 1gyu_A Adapter-related protein 52.8 88 0.003 25.1 10.5 43 93-135 47-93 (140)
29 2lll_A Lamin-B2; immunoglobuli 51.0 27 0.00091 28.5 5.6 41 98-138 35-81 (139)
30 3hn9_A Lamin-B1; structural ge 50.3 18 0.00062 28.7 4.3 40 98-138 26-71 (123)
31 3e38_A Two-domain protein cont 36.4 50 0.0017 30.4 5.6 65 97-173 270-334 (343)
32 3zy7_A AP-1 complex subunit ga 33.8 1.7E+02 0.0057 22.8 9.9 49 94-142 30-84 (122)
33 3vta_A Cucumisin; subtilisin-l 31.1 1.6E+02 0.0054 28.8 8.6 50 94-143 538-590 (621)
34 3zy7_A AP-1 complex subunit ga 28.0 62 0.0021 25.3 4.1 49 68-116 51-99 (122)
35 3mnm_A ADP-ribosylation factor 25.6 2.4E+02 0.0081 21.9 9.9 50 93-142 31-86 (123)
36 1e1h_A BONT/A LC, botulinum ne 23.2 36 0.0012 31.0 2.1 71 48-122 9-87 (287)
37 1ifr_A Lamin A/C; immunoglobul 23.0 92 0.0032 24.5 4.3 41 98-138 20-66 (121)
38 2huh_A Putative DNA mismatch r 22.1 1.3E+02 0.0043 24.9 5.0 66 96-173 29-94 (147)
39 2xzz_A Protein-glutamine gamma 22.1 2.6E+02 0.0088 21.1 7.0 52 91-143 18-72 (102)
40 2e9g_A AP-1 complex subunit ga 21.9 2.7E+02 0.0093 21.7 6.9 43 93-135 38-84 (131)
41 2ccw_A Azurin II, AZN-2; elect 21.7 83 0.0028 24.7 3.8 63 76-142 12-99 (129)
42 1gyu_A Adapter-related protein 21.7 94 0.0032 24.9 4.1 48 69-116 70-117 (140)
43 2iaa_C Azurin; quinoprotein, t 21.2 1E+02 0.0034 24.2 4.1 63 76-142 11-98 (128)
44 3o0l_A Uncharacterized protein 21.1 1.6E+02 0.0056 22.6 5.3 52 91-142 36-94 (112)
45 1wm3_A Ubiquitin-like protein 21.0 83 0.0028 21.8 3.3 21 98-118 3-23 (72)
46 1cuo_A Protein (azurin ISO-2); 20.6 60 0.002 25.6 2.7 62 76-142 12-99 (129)
47 3qs2_A Fimbrillin MATB homolog 20.5 32 0.0011 29.4 1.1 42 72-114 33-80 (188)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-34 Score=241.52 Aligned_cols=125 Identities=28% Similarity=0.443 Sum_probs=113.6
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCC
Q 024677 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (264)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~ 152 (264)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+++ |+..
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~---~~~~-- 85 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ---PFDY-- 85 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEEC---CCCC--
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEEC---CCcC--
Confidence 35789999988999999999999999999999999999999999999999999999999999999999996 4322
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCCC
Q 024677 153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAER 203 (264)
Q Consensus 153 pp~~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~fv~p~~ 203 (264)
.++.+|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..
T Consensus 86 -~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~ 135 (147)
T 2cri_A 86 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNE 135 (147)
T ss_dssp -CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCC
T ss_pred -CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCC
Confidence 23568999999999999988777899999998888999999999988754
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=7.8e-34 Score=231.73 Aligned_cols=121 Identities=30% Similarity=0.460 Sum_probs=110.5
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCC
Q 024677 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (264)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~ 152 (264)
++++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+++ |+..
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~---~~~~-- 81 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ---PFDY-- 81 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEEC---CCCC--
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEEC---cCcC--
Confidence 35689999988999999999999999999999999999999999999999999999999999999999996 4322
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEe
Q 024677 153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFL 199 (264)
Q Consensus 153 pp~~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~fv 199 (264)
.++.+|+|||+||++.++++.+++.++|++.++..++++||||+|.
T Consensus 82 -~p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 82 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp -CTTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred -CcccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence 2346899999999999999877789999999888999999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=9.2e-35 Score=245.14 Aligned_cols=129 Identities=26% Similarity=0.379 Sum_probs=113.0
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCC
Q 024677 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (264)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~ 152 (264)
.+++|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+|+ ++ .+
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq---~~-~~- 89 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-LT- 89 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-SC-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEec---Cc-cc-
Confidence 35689999988999999999999999999999999999999999999999999999999999999999996 32 11
Q ss_pred CCCCCCCCCeEEEEEEEeC--CCC--CChhhhhhccCCCcceEEEEEEEEecC-CCCCchHHH
Q 024677 153 QPLDQKSKDKFKIMSLKVK--GGI--DYVPELFDEQKDQVTVERILRVVFLNA-ERPSPALEK 210 (264)
Q Consensus 153 pp~~~~~kDKFLVqS~~v~--~~~--d~~~elfk~~~~~~v~e~KLrV~fv~p-~~pSp~~e~ 210 (264)
..++|||+||++.++ ++. +++.++|++..+..++++||||+|+++ +|||+++++
T Consensus 90 ----~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g 148 (152)
T 1wic_A 90 ----VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG 148 (152)
T ss_dssp ----CCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCC
T ss_pred ----CCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccccC
Confidence 378999999999998 443 467899999988889999999999875 446666543
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.97 E-value=7.4e-30 Score=208.84 Aligned_cols=118 Identities=17% Similarity=0.292 Sum_probs=100.6
Q ss_pred CCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCCC
Q 024677 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ 153 (264)
Q Consensus 74 ~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~p 153 (264)
...|.++|.++|.|++++++++++.|+|+|+|+++||||||||+|++|+|||++|+|.||+++.|.|+|+ ++...
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q---~~~~~-- 80 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCD---TFNAA-- 80 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEEC---CCCGG--
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEec---CCCCC--
Confidence 3469999999999999999999999999999999999999999999999999999999999999999997 43322
Q ss_pred CCCCCCCCeEEEEEEEeCCCC--CChhhhhhccCCCcceEEEEEEEEe
Q 024677 154 PLDQKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTVERILRVVFL 199 (264)
Q Consensus 154 p~~~~~kDKFLVqS~~v~~~~--d~~~elfk~~~~~~v~e~KLrV~fv 199 (264)
|. ...+|||+|||+.++++. |+..+|| ..++ .+..++|+|.|.
T Consensus 81 ~~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf-~~d~-~~~~k~L~V~Yn 125 (126)
T 1msp_A 81 TE-DLNNDRITIEWTNTPDGAAKQFRREWF-QGDG-MVRRKNLPIEYN 125 (126)
T ss_dssp GS-CCSSCEEEEEEEECCTTCCSSCCTHHH-HSSS-CCEEEEEEEEEE
T ss_pred CC-ccCCCEEEEEEEECCCCcchhhhHHhh-cCCC-ceEEEEEEEEec
Confidence 22 245999999999999885 4545555 4433 478999999995
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=3.7e-27 Score=189.34 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=90.7
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCCCCCC
Q 024677 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156 (264)
Q Consensus 77 L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~ 156 (264)
|.|+|. +|.|.++.+ ++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++| |+
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q---~~-------- 67 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG-------- 67 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeC---CC--------
Confidence 899996 699998743 699999999999999999999999999999999999999999999996 32
Q ss_pred CCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEE
Q 024677 157 QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV 197 (264)
Q Consensus 157 ~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~ 197 (264)
..++|||+||++.++++..+..++|++... ..+.+|++.
T Consensus 68 ~~~~dKflvq~~~~~~~~~d~~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 68 APKEDKLVVHFASAPADATDAQAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp CCEEEEEEEEEEECCTTCSCHHHHHTTCCC--CEEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHhhcCCC--CceEEEEEE
Confidence 247999999999999887778999998655 356666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=2.8e-26 Score=186.52 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=92.3
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCCCCC
Q 024677 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPL 155 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~ 155 (264)
++.++|. +|.|+++.+ ++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+++ |+ +
T Consensus 10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q---~~-----~- 76 (116)
T 1m1s_A 10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG-----P- 76 (116)
T ss_dssp SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC-----C-
T ss_pred eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeC---CC-----C-
Confidence 5889995 999998743 799999999999999999999999999999999999999999999996 32 1
Q ss_pred CCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEE
Q 024677 156 DQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV 197 (264)
Q Consensus 156 ~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~ 197 (264)
.++|||+||++.++++..++.++|++..+ ..+.+|++.
T Consensus 77 --~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 77 --PKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp --SCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred --CCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence 46899999999999877678999998655 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=1.7e-05 Score=63.01 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=55.2
Q ss_pred CcEEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEee
Q 024677 75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 75 ~~L~IdP~~eL~F~~e-~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
..|.+ | +.|.|..- .+...+..|.|+|+++.++.|++++. .-|.|.|+.|.|.||+++.|.|+..
T Consensus 24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~ 89 (122)
T 2ys4_A 24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFE 89 (122)
T ss_dssp CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEEC
T ss_pred cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEE
Confidence 44555 6 58888663 46677899999999999999999975 4699999999999999999999995
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=7.3e-05 Score=57.56 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=56.7
Q ss_pred CcEEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCCC---cceEeeCCeeeeCCCCeEEEEEEee
Q 024677 75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 75 ~~L~IdP~~eL~F~~e-~~k~vss~LtLtN~S~~~VAFKVKTTaP---k~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
..+.+++. .|.|-.- .+...+..++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.
T Consensus 8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~ 79 (112)
T 2e6j_A 8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFS 79 (112)
T ss_dssp CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEEC
T ss_pred CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEE
Confidence 45888884 7888653 4667889999999999999999964222 4699999999999999999999995
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.77 E-value=0.00017 Score=59.29 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=57.7
Q ss_pred CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeC------CCcceEeeCCeeeeCCCCeEEEEEEeec
Q 024677 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKFV 144 (264)
Q Consensus 75 ~~L~IdP~~eL~F~~-e~~k~vss~LtLtN~S~~~VAFKVKTT------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~ 144 (264)
..+.+++ ..|.|-. .++...+.+|+|+|++.-+.-|++.-. .+.-+.|.|..|.|.||+++.|.|++..
T Consensus 25 P~i~v~~-~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESC-CEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeee-eeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 5677887 5898874 467778899999999999999999853 2345889999999999999999999863
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.22 E-value=0.0013 Score=61.60 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=57.5
Q ss_pred CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeCCCc-c-----eEeeCCeeeeCCCCeEEEEEEeec
Q 024677 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAPK-S-----CYMRPPGGVLAPGDSIIATVFKFV 144 (264)
Q Consensus 75 ~~L~IdP~~eL~F~~-e~~k~vss~LtLtN~S~~~VAFKVKTTaPk-~-----Y~VRPn~GiL~Pgesi~V~Vtlq~ 144 (264)
..+.+++ .+|.|-. .++...+.+|+|+|++.-++.|++.....+ . +.|.|..|.|.||+++.|.|++..
T Consensus 28 P~v~v~~-~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 28 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CCEEESC-SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CeEEEec-CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 5678888 5999854 567888999999999999999999854222 2 669999999999999999999864
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.18 E-value=0.021 Score=49.35 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=56.2
Q ss_pred cEEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEee
Q 024677 76 RLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e-~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
.|++++ +.|.|..- .|......++++|+++.++-++.-.. |..+.+++..+.|+||++..|.|++.
T Consensus 2 ~i~~~~-~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~ 68 (220)
T 2qsv_A 2 PLQVSN-ARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLA 68 (220)
T ss_dssp CEEESC-SEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEEC
T ss_pred ceEEec-CeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEc
Confidence 388999 59999763 45566789999999999999987644 88888899999999999999999995
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.99 E-value=0.1 Score=45.01 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=55.8
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEE-EEeeCCCcceEeeCCeeeeCCCCeEEEEEEee
Q 024677 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 75 ~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAF-KVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
..+.++ ..+.|-.-.+...+..++|+|+++.++.+ +|+|+ -+...+.++.+.|+||++..|.|++.
T Consensus 118 ~~i~~~--~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~s-cgct~~~~~~~~i~PGe~~~i~v~~~ 184 (220)
T 2qsv_A 118 GVMELS--TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTR-NPALTAVPDRTEIKPGGSTLLRIAVD 184 (220)
T ss_dssp CCEECC--CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEEC-STTEEEEESCSEECTTCEEEEEEEEC
T ss_pred CEEEEE--eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeC-CCCEeeecCCccCCCCCEEEEEEEEe
Confidence 468888 48888643377888999999999999887 88876 47889999999999999999999995
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=88.79 E-value=8.7 Score=34.15 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=65.9
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----cceEeeCCeeeeCCCCeEEEEEEeecc
Q 024677 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKFVE 145 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTa------P----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e 145 (264)
-|.|+|. .+.|+.. +-..+|+|+|.++.++.-.+-..+ | .-|.|.|+.--|+||+...|.|+....
T Consensus 29 ~v~i~~T-RvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~ 104 (257)
T 3q48_A 29 GLIAQGT-RVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA 104 (257)
T ss_dssp --CCSCS-EEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC
T ss_pred eEEEcce-EEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC
Confidence 4778884 7777753 224799999999987665543221 1 139999999999999999999987421
Q ss_pred CCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecC
Q 024677 146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNA 201 (264)
Q Consensus 146 ~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~fv~p 201 (264)
+ . |.+.. --|-+.-..++...+. +...=......+|++-|-+.
T Consensus 105 -~----L-P~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~ 147 (257)
T 3q48_A 105 -P----L-PTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPS 147 (257)
T ss_dssp -C----C-CSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECT
T ss_pred -C----C-CCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEecc
Confidence 1 1 33322 3455555555543221 11112334678899988764
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=82.19 E-value=9 Score=33.17 Aligned_cols=64 Identities=9% Similarity=0.190 Sum_probs=48.0
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEee
Q 024677 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
-|.+++. .+.|+... -..+|+|+|.++.++.-.+-.. ...-|.|.|+.--|+||+...|.|+..
T Consensus 13 ~v~i~~T-RvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 81 (221)
T 2co7_B 13 SVKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT 81 (221)
T ss_dssp ECEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC
T ss_pred EEEEcce-EEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEEC
Confidence 3678884 77777543 2479999999988765554321 122499999999999999999999885
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=78.50 E-value=32 Score=29.62 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=47.4
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEeeCC-------CcceEeeCCeeeeCCCCeEEEEEEee
Q 024677 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 77 L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~-~VAFKVKTTa-------Pk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
|.+++ ..+.|+... -..+|+|+|.++. ++.-.+-..+ ..-|.|-|+.--|+||+...|.|+..
T Consensus 2 v~l~~-TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 72 (218)
T 2xg5_A 2 VSLDR-TRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT 72 (218)
T ss_dssp EEESC-SEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEEC
T ss_pred cEeCc-eEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEec
Confidence 56777 477777542 3479999999987 7655543321 22499999999999999999999885
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=78.27 E-value=31 Score=29.39 Aligned_cols=109 Identities=9% Similarity=0.116 Sum_probs=66.0
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEe-eccCCCC
Q 024677 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFK-FVEAPEN 149 (264)
Q Consensus 77 L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~-~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtl-q~e~P~~ 149 (264)
+.+++ ..+.|+... -..+|+|+|.++. ++.-.+-.. ...-|.|.|+.--|+||+...|.|+. .. .+
T Consensus 2 v~l~~-TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~-- 74 (205)
T 1klf_A 2 VALGA-TRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQ-- 74 (205)
T ss_dssp EEESC-SEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SC--
T ss_pred eEecc-eEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CC--
Confidence 56777 477777542 3479999999987 765554321 12349999999999999999999987 52 11
Q ss_pred cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCC-CcceEEEEEEEEecC
Q 024677 150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKD-QVTVERILRVVFLNA 201 (264)
Q Consensus 150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~-~~v~e~KLrV~fv~p 201 (264)
. |.+.. --|-+.-..++...+... .... ......+|++-|-+.
T Consensus 75 --l-P~DrE--slf~lnv~eIPp~~~~~~----~~n~lqia~r~riKlFyRP~ 118 (205)
T 1klf_A 75 --L-PQDRE--SLFWMNVKAIPSMDKSKL----TENTLQLAIISRIKLYYRPA 118 (205)
T ss_dssp --S-CSSSC--EEEEEEEEEECCCCTTST----TSCEEEEEEEEEEEEEEECT
T ss_pred --C-CCCce--EEEEEEeEecCCCCcccc----CCceEEEEeeeeeeEEEccc
Confidence 1 33322 345555555554221100 0011 123467888877764
No 17
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=76.67 E-value=7.9 Score=36.76 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=51.4
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEe---------eCC------------eeeeC
Q 024677 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM---------RPP------------GGVLA 131 (264)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~V---------RPn------------~GiL~ 131 (264)
....+.++-. .-.|.- +++..+-+|+++|.++++|-..==+|+.-+|.- -|- ..=|+
T Consensus 246 ~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~ 323 (382)
T 1yew_A 246 PAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLA 323 (382)
T ss_dssp CCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBC
T ss_pred CCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcC
Confidence 3556777763 556664 588999999999999999988866777766633 221 12389
Q ss_pred CCCeEEEEEEee
Q 024677 132 PGDSIIATVFKF 143 (264)
Q Consensus 132 Pgesi~V~Vtlq 143 (264)
|||+.+|.|..+
T Consensus 324 PGETr~~~v~a~ 335 (382)
T 1yew_A 324 PGETRTVDVTAS 335 (382)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCceeEEEEEee
Confidence 999999999987
No 18
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=75.97 E-value=6.5 Score=32.38 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=26.9
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCc---ceEeeCCeeeeCCCCeEEE
Q 024677 98 AVRLKNTSKSHVA---FKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (264)
Q Consensus 98 ~LtLtN~S~~~VA---FKVKTTaPk---~Y~VRPn~GiL~Pgesi~V 138 (264)
.|+|.|++++.+. |+|+=+..+ .|. =|+.=+|+||.+++|
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~-FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK-YTSRYVLKAGQTVTI 84 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEE-CCTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEE-cCCCcEECCCCEEEE
Confidence 7899999987663 566533222 243 355559999999765
No 19
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=75.07 E-value=23 Score=31.12 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=47.0
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEee
Q 024677 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
-|.|++. .+.|+... -..+|+|+|.++.++.-.+-.. ...-|.|.|+.--|+||+...|.|+..
T Consensus 23 ~v~l~~T-RvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~ 91 (239)
T 4djm_A 23 SLHLGAT-RVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRT 91 (239)
T ss_dssp CCEESCS-EEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred eEEEcce-EEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 4778884 77776532 2379999999887754433211 122499999999999999999999874
No 20
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=74.72 E-value=7.7 Score=37.20 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=48.8
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceE--------------------e-eCCeeeeCCC
Q 024677 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCY--------------------M-RPPGGVLAPG 133 (264)
Q Consensus 75 ~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTTaPk~Y~--------------------V-RPn~GiL~Pg 133 (264)
..+.++-. .-.|.- +++..+-+|+++|.++++|-+.==+|+.-+|. + .|+ -|.||
T Consensus 282 ~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 282 EQVTTELN-GGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp CCCEEEEE-EEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CceEEEEe-ceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 34566653 556665 58889999999999999998875566666664 1 122 59999
Q ss_pred CeEEEEEEee
Q 024677 134 DSIIATVFKF 143 (264)
Q Consensus 134 esi~V~Vtlq 143 (264)
|+.+|+|.++
T Consensus 358 ETrt~~V~a~ 367 (419)
T 3rfr_A 358 ESKEIVVKIQ 367 (419)
T ss_dssp CEEEEEEEEE
T ss_pred cceEEEEEee
Confidence 9999999987
No 21
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=74.69 E-value=12 Score=28.89 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=43.4
Q ss_pred ceEeeCCCCC-eeEEEEEEEcCCCCeEEEEEeeCCCcceEe-eCCeeeeCCCCeEEEEEEeec
Q 024677 84 NLYFPYEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGGVLAPGDSIIATVFKFV 144 (264)
Q Consensus 84 eL~F~~e~~k-~vss~LtLtN~S~~~VAFKVKTTaPk~Y~V-RPn~GiL~Pgesi~V~Vtlq~ 144 (264)
.|+-....|. .-..+|+|.|++.+...|.|+-...+-+.+ .|..=.|+||+...+.|++..
T Consensus 21 ~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~ 83 (118)
T 2r39_A 21 QLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGA 83 (118)
T ss_dssp CCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEE
T ss_pred ceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEE
Confidence 4544444443 456999999999999999998876444554 455457889999888888753
No 22
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=74.08 E-value=32 Score=29.69 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=63.2
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-------CCcceEeeCCeeeeCCCCeEEEEEEeeccCCC
Q 024677 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-------APKSCYMRPPGGVLAPGDSIIATVFKFVEAPE 148 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTT-------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~ 148 (264)
-+.|+- ..+.|+... -..+|+|+|.++.++.-..... ...-|.|.|+.--|+||+...|.|+.... +
T Consensus 13 gv~l~~-TRvIy~~~~---k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~- 86 (218)
T 4ay0_A 13 GVTIGE-SRIIYPLDA---AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-V- 86 (218)
T ss_dssp CEEESC-CEEEEETTC---SCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-C-
T ss_pred eEEECc-eEEEECCCC---cEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-C-
Confidence 366776 477776532 2478999999988765553321 11239999999999999999999987521 1
Q ss_pred CcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecC
Q 024677 149 NNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNA 201 (264)
Q Consensus 149 ~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~fv~p 201 (264)
. |.|. ---|-+.-..++...+... ..-......+|++-|-+.
T Consensus 87 ---L-P~DR--ESlf~lnv~eIPp~~~~~~-----n~lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 87 ---F-PRDK--ESLKWLCVKGIPPKDEDIW-----VDVQFAINNCIKLLVRPN 128 (218)
T ss_dssp ---C-CSSS--CEEEEEEEEEECC-------------------CEEEEEEECT
T ss_pred ---C-CcCc--EEEEEEEEEecCCCCcccc-----ceeEEEEEEEEEEEEcCc
Confidence 1 3222 2336666666665321100 011233567888888764
No 23
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=72.70 E-value=44 Score=28.42 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=65.4
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCC-CeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEE-eeccCCCC
Q 024677 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVF-KFVEAPEN 149 (264)
Q Consensus 77 L~IdP~~eL~F~~e~~k~vss~LtLtN~S~-~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vt-lq~e~P~~ 149 (264)
|.+++ ..+.|+... -..+|+|+|.++ .++.-.+-.. ...-|.|.|+.--|+||+...|.|+ ... .+
T Consensus 2 v~l~~-TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~-- 74 (206)
T 1l4i_A 2 VALGA-TRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQ-- 74 (206)
T ss_dssp EEESC-SEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TC--
T ss_pred eEeCc-eEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CC--
Confidence 56777 477777542 347999999986 6665554321 1234999999999999999999998 631 11
Q ss_pred cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024677 150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (264)
Q Consensus 150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~fv~p~ 202 (264)
. |.+... -|-+.-..++...+... ....-......+|++-|-+..
T Consensus 75 --l-P~DrEs--lf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 75 --M-PEDRES--LFWVNVKAIPAMDKAKT---GENYLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp --S-CSSSCE--EEEEEEEEEECCC-----------CCCEEEEEEEEEEECTT
T ss_pred --C-CCCceE--EEEEEeecCCCCccccc---CCceEEEEhhheeeEEEeccc
Confidence 1 333332 34444444443221100 001123346788999887653
No 24
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=62.81 E-value=19 Score=28.66 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=39.5
Q ss_pred CCCeeEEEEEEEcCCCCe-EEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEe
Q 024677 91 PGKQTRSAVRLKNTSKSH-VAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142 (264)
Q Consensus 91 ~~k~vss~LtLtN~S~~~-VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtl 142 (264)
.|+.++..++++|..... =+|+|+-...+...-.-..+ |++|++..|.+..
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 578899999999998864 48888866566554333334 9999999999887
No 25
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=62.56 E-value=16 Score=32.76 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=37.5
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEeeCCCc----ce--EeeCCeeeeCCCCeEEEEEEeeccCCC
Q 024677 92 GKQTRSAVRLKNTSKSHVA-FKFQTTAPK----SC--YMRPPGGVLAPGDSIIATVFKFVEAPE 148 (264)
Q Consensus 92 ~k~vss~LtLtN~S~~~VA-FKVKTTaPk----~Y--~VRPn~GiL~Pgesi~V~Vtlq~e~P~ 148 (264)
+...+-.|.+.|++..++. |++....++ .+ .+.|.-..|.|++.+...|......|+
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~~pF 130 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDF 130 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCC
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEcccc
Confidence 3456789999999987663 666544444 34 345666899999987665543322465
No 26
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=61.66 E-value=13 Score=33.01 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeE-EEEEeeCCCcceEeeCCe-----eeeCCCCeEEEEEEee
Q 024677 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMRPPG-----GVLAPGDSIIATVFKF 143 (264)
Q Consensus 74 ~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~V-AFKVKTTaPk~Y~VRPn~-----GiL~Pgesi~V~Vtlq 143 (264)
+.-|.|+= .|... +.++.-.|+|+|.+..++ -|.|+-+ .+.|-+-|.. .-|.||+++++.|-+.
T Consensus 41 g~GLeI~g----~f~r~-~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 41 AKGLEISG----TFTHR-QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTTEEEEE----EEEEE-TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCcEEEEE----EEEEe-CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 45677664 34333 457889999999999754 4555543 3444444432 4499999999998875
No 27
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=58.11 E-value=94 Score=27.00 Aligned_cols=105 Identities=10% Similarity=0.157 Sum_probs=61.4
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEE--EeeCC----CcceEeeCCeeeeCCCCeEEEEEEeeccCCCC
Q 024677 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFK--FQTTA----PKSCYMRPPGGVLAPGDSIIATVFKFVEAPEN 149 (264)
Q Consensus 77 L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~-~VAFK--VKTTa----Pk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~ 149 (264)
|.++. ..+.|+... -..+|+|+|.++. ++.-. |.... ..-|.|.|+.--|+||+...|.|+.... +
T Consensus 2 ~~l~~-TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~-- 74 (224)
T 3gfu_C 2 LAVDQ-TRYIFRGDK---DALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-H-- 74 (224)
T ss_dssp EECSC-SEEEEETTS---SCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-C--
T ss_pred ccccc-eEEEEeCCC---ceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-C--
Confidence 45666 467777532 2379999999876 43222 22211 1239999999999999999999987421 1
Q ss_pred cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEec
Q 024677 150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLN 200 (264)
Q Consensus 150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elfk~~~~~~v~e~KLrV~fv~ 200 (264)
. |.+.. --|-+.-..++...+ ...-......+|++-|.+
T Consensus 75 --L-P~DRE--Slf~lnv~eIPp~~~-------~n~Lqiair~rIKLFyRP 113 (224)
T 3gfu_C 75 --L-PKDKE--SVYWLNLQDIPPALE-------GSGIAVALRTKLKLFYRP 113 (224)
T ss_dssp --C-CSSSC--EEEEEEEEEECCCCS-------SSBCCEEEEEEEEEEEEC
T ss_pred --C-CCCce--EEEEEEeecCCCCCC-------CCeEEEEEEEEeeEEEcc
Confidence 1 33322 334444444544221 111233456777777765
No 28
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=52.79 E-value=88 Score=25.10 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=32.3
Q ss_pred CeeEEEEEEEcCCCCeE-EEEEeeCCCcceEee--CCee-eeCCCCe
Q 024677 93 KQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAPGDS 135 (264)
Q Consensus 93 k~vss~LtLtN~S~~~V-AFKVKTTaPk~Y~VR--Pn~G-iL~Pges 135 (264)
+...-.++.+|.+..+| -|.++.-.||.|.++ |.+| .|.|+..
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~ 93 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNT 93 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGC
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCC
Confidence 34566788999988655 899999999998777 5555 5888443
No 29
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.03 E-value=27 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=27.8
Q ss_pred EEEEEcCCCCeE---EEEEeeCCCc---ceEeeCCeeeeCCCCeEEE
Q 024677 98 AVRLKNTSKSHV---AFKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (264)
Q Consensus 98 ~LtLtN~S~~~V---AFKVKTTaPk---~Y~VRPn~GiL~Pgesi~V 138 (264)
.|+|.|++++.+ -|+|+=...+ .-+.=|+.=+|.||.+++|
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 789999988766 4777754321 2233466678999998654
No 30
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=50.30 E-value=18 Score=28.72 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=28.5
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCc---ceEeeCCeeeeCCCCeEEE
Q 024677 98 AVRLKNTSKSHVA---FKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (264)
Q Consensus 98 ~LtLtN~S~~~VA---FKVKTTaPk---~Y~VRPn~GiL~Pgesi~V 138 (264)
.|+|.|++++.+. |+++-...+ .|.. |..=+|+||.+++|
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 7899999987664 777744332 4554 55559999999765
No 31
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=36.36 E-value=50 Score=30.35 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCCCCCCCCCCCeEEEEEEEeCCC
Q 024677 97 SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173 (264)
Q Consensus 97 s~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~ 173 (264)
-+|.|+|.|+- -|.++-+.+..|.+.++.=-|+|+++..+.|-.. +. .....-+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFK-----QG-----IKGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEEC-----TT-----CCCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecc-----cc-----ccceEEEEEeeeeeecCC
Confidence 58888888876 5677778999999999999999999999998762 11 123446777766665544
No 32
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=33.75 E-value=1.7e+02 Score=22.76 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=37.0
Q ss_pred eeEEEEEEEcCCCCeE-EEEEeeCCCcceEee--CCee-eeCC--CCeEEEEEEe
Q 024677 94 QTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAP--GDSIIATVFK 142 (264)
Q Consensus 94 ~vss~LtLtN~S~~~V-AFKVKTTaPk~Y~VR--Pn~G-iL~P--gesi~V~Vtl 142 (264)
...-.++.+|.+..+| -|.++.-.||.|.++ |.+| .|.| +..++=.+.+
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i 84 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV 84 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE
Confidence 4667888899988765 799999999998776 7776 6888 6665544444
No 33
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=31.10 E-value=1.6e+02 Score=28.82 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=38.8
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCcce--EeeCCeeee-CCCCeEEEEEEee
Q 024677 94 QTRSAVRLKNTSKSHVAFKFQTTAPKSC--YMRPPGGVL-APGDSIIATVFKF 143 (264)
Q Consensus 94 ~vss~LtLtN~S~~~VAFKVKTTaPk~Y--~VRPn~GiL-~Pgesi~V~Vtlq 143 (264)
..+-+-+++|.....-.|+++.+.|.-. .|.|..=.+ ..|++..++|++.
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~ 590 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR 590 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEE
Confidence 3445668999999999999998888754 566887666 5688888888874
No 34
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=27.98 E-value=62 Score=25.30 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=33.7
Q ss_pred cccCCCCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC
Q 024677 68 RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT 116 (264)
Q Consensus 68 k~~~p~~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTT 116 (264)
.--+|+...|.+.|..-=....-.+..++..|+|.|....+|-.|+|-+
T Consensus 51 qaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~kls 99 (122)
T 3zy7_A 51 QAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLT 99 (122)
T ss_dssp EEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEEE
T ss_pred EEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEEE
Confidence 3346777889999975333332225678999999999877776666643
No 35
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=25.56 E-value=2.4e+02 Score=21.95 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=36.7
Q ss_pred CeeEEEEEEEcCCCCeE-EEEEeeCCCcceEee--CCee-eeCCC--CeEEEEEEe
Q 024677 93 KQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAPG--DSIIATVFK 142 (264)
Q Consensus 93 k~vss~LtLtN~S~~~V-AFKVKTTaPk~Y~VR--Pn~G-iL~Pg--esi~V~Vtl 142 (264)
....-.+...|.+..+| -|.++.-.||.|.++ |.+| .|.|+ ..++=.+.+
T Consensus 31 ~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 31 SVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE
T ss_pred CeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE
Confidence 35667888899988766 799999999998776 7666 69998 444433333
No 36
>1e1h_A BONT/A LC, botulinum neurotoxin type A light chain; Zn-endopeptidase, complex, substrate bound, inhibitor bound, hydrolase; 1.80A {Clostridium botulinum} SCOP: d.92.1.7
Probab=23.24 E-value=36 Score=30.99 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=22.4
Q ss_pred CccCcCCCCCCCCccccceecccCCCCCcEEeeCCCceEeeCC--C-CCeeEEEEEEEcCCCC--eEEEEEeeC---CCc
Q 024677 48 PHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYE--P-GKQTRSAVRLKNTSKS--HVAFKFQTT---APK 119 (264)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~ak~~~p~~~~L~IdP~~eL~F~~e--~-~k~vss~LtLtN~S~~--~VAFKVKTT---aPk 119 (264)
...--.||-|-++. ...+-++.+ ....|..+- +.=.|++. - ++.+ ..|+..|+... .-||||--+ .|+
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~nnfNy~dPVnn~~I-~~~~~p~~~~~~y~KAFkI~~nIWIiPE 84 (287)
T 1e1h_A 9 SGLVPRGSGMKETA-AAKFERQHM-DSPDLGTDD-DDKAMAYKDPVNGVDI-AYIKIPNAGQMQPVKAFKIHNKIWVIPE 84 (287)
T ss_dssp ---------------------------------------CCTTCCCCSSSE-EEEECTTCTTCCCEEEEEEETTEEEEEE
T ss_pred CCccccCCcchhhH-HHHHHHhcC-CCCCcCCcc-cccccccCCCCCCceE-EEEecCCCCCCceeeeEEeeCCeEEccc
Confidence 33445677777664 455667767 444466664 35567664 2 3333 67777777665 679998754 566
Q ss_pred ceE
Q 024677 120 SCY 122 (264)
Q Consensus 120 ~Y~ 122 (264)
||.
T Consensus 85 Ry~ 87 (287)
T 1e1h_A 85 RDT 87 (287)
T ss_dssp ECC
T ss_pred ccc
Confidence 665
No 37
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=22.95 E-value=92 Score=24.51 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=27.4
Q ss_pred EEEEEcCCCCeEE---EEEeeC-C--CcceEeeCCeeeeCCCCeEEE
Q 024677 98 AVRLKNTSKSHVA---FKFQTT-A--PKSCYMRPPGGVLAPGDSIIA 138 (264)
Q Consensus 98 ~LtLtN~S~~~VA---FKVKTT-a--Pk~Y~VRPn~GiL~Pgesi~V 138 (264)
.|+|.|++++.+. |+++-. . ...-+.=|..=+|.||.+++|
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 7899999887663 677754 2 112333466678999998653
No 38
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=22.09 E-value=1.3e+02 Score=24.88 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=51.1
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEeeccCCCCcCCCCCCCCCCCeEEEEEEEeCCC
Q 024677 96 RSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173 (264)
Q Consensus 96 ss~LtLtN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~ 173 (264)
.-.+-|.|.|+-++.|-.-+-..+.+..| ..|+|.|+..+.|.=+-.. +...-.+|.||-+....+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~-----------eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKD-----------VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGG-----------GGGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChh-----------HhcCCceEEEEEEEEcCC
Confidence 45778999999999999988888888776 6899999999888644321 123446789998888774
No 39
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=22.07 E-value=2.6e+02 Score=21.09 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=37.3
Q ss_pred CCCeeEEEEEEEcCCCC---eEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEee
Q 024677 91 PGKQTRSAVRLKNTSKS---HVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (264)
Q Consensus 91 ~~k~vss~LtLtN~S~~---~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (264)
-++.....++++|+=.. ...|-|--..-.+=... ..|-|.||+++.+++.+.
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~ 72 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFV 72 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEEC
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEe
Confidence 37788999999999774 56888775433222111 147799999999999985
No 40
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.89 E-value=2.7e+02 Score=21.74 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=32.5
Q ss_pred CeeEEEEEEEcCCCCeE-EEEEeeCCCcceEee--CCee-eeCCCCe
Q 024677 93 KQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAPGDS 135 (264)
Q Consensus 93 k~vss~LtLtN~S~~~V-AFKVKTTaPk~Y~VR--Pn~G-iL~Pges 135 (264)
+...-.++..|.+..+| -|.++--.||.|.++ |.+| .|.|+..
T Consensus 38 ~~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 38 ALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp TEEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTC
T ss_pred CeEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCC
Confidence 34566788999988655 899998899998766 5555 6888655
No 41
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=21.72 E-value=83 Score=24.71 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=36.9
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCe-----EEEEEeeCC-------------Cc-ceEe--eC----Ceeee
Q 024677 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSH-----VAFKFQTTA-------------PK-SCYM--RP----PGGVL 130 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~-----VAFKVKTTa-------------Pk-~Y~V--RP----n~GiL 130 (264)
.+.++|. +|..+. .|+. -+|+|+|+..-+ --|-|-+.+ +. .|.- .+ ...+|
T Consensus 12 ~m~F~p~-~i~V~k-~G~~--vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l 87 (129)
T 2ccw_A 12 AMQYNVK-EIVVDK-SCKQ--FTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVI 87 (129)
T ss_dssp TSCBSCS-EEEECT-TCSE--EEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CccEecc-eEEEec-CCCE--EEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEE
Confidence 4678885 666532 3554 489999998642 334443322 10 1110 01 24578
Q ss_pred CCCCeEEEEEEe
Q 024677 131 APGDSIIATVFK 142 (264)
Q Consensus 131 ~Pgesi~V~Vtl 142 (264)
.||++..|++..
T Consensus 88 ~pGet~svtf~~ 99 (129)
T 2ccw_A 88 GGGESDSVTFDV 99 (129)
T ss_dssp CTTCEEEEEEEG
T ss_pred CCCCEEEEEEec
Confidence 999999998876
No 42
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=21.70 E-value=94 Score=24.95 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=30.5
Q ss_pred ccCCCCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC
Q 024677 69 SLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT 116 (264)
Q Consensus 69 ~~~p~~~~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~VAFKVKTT 116 (264)
--+|+.-.|.+.|..-=....-.+..++..|+|.|....+|..|+|-+
T Consensus 70 aAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~~~l~LR~kls 117 (140)
T 1gyu_A 70 AAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLT 117 (140)
T ss_dssp EECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCEEEEEE
T ss_pred EEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEEEE
Confidence 346777788888843222222113457899999998776666666643
No 43
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=21.16 E-value=1e+02 Score=24.24 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=37.0
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCe-----EEEEEeeCC-------------C-cceEe--eC----Ceeee
Q 024677 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSH-----VAFKFQTTA-------------P-KSCYM--RP----PGGVL 130 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~vss~LtLtN~S~~~-----VAFKVKTTa-------------P-k~Y~V--RP----n~GiL 130 (264)
.+.++|. +|..+. .|+. -+|+|+|+..-+ --|-|-+.+ + ..|.- .+ ..++|
T Consensus 11 ~m~F~p~-~i~V~k-~G~~--vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 86 (128)
T 2iaa_C 11 SMQFNTK-SIVVDK-TCKE--FTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVI 86 (128)
T ss_dssp TSCBSCS-EEEECT-TCSE--EEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CceEecC-EEEEec-CCcE--EEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceee
Confidence 4778884 666633 3443 489999998543 333333321 1 11210 11 24579
Q ss_pred CCCCeEEEEEEe
Q 024677 131 APGDSIIATVFK 142 (264)
Q Consensus 131 ~Pgesi~V~Vtl 142 (264)
.||++..|++..
T Consensus 87 ~pGes~~vtf~~ 98 (128)
T 2iaa_C 87 GGGETDSVTFDV 98 (128)
T ss_dssp CTTCEEEEEEES
T ss_pred CCCCEEEEEEec
Confidence 999999998875
No 44
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=21.13 E-value=1.6e+02 Score=22.63 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=39.1
Q ss_pred CCCeeEEEEEEEcCCCCe--EEEEEeeCCCcceEeeCC-e----eeeCCCCeEEEEEEe
Q 024677 91 PGKQTRSAVRLKNTSKSH--VAFKFQTTAPKSCYMRPP-G----GVLAPGDSIIATVFK 142 (264)
Q Consensus 91 ~~k~vss~LtLtN~S~~~--VAFKVKTTaPk~Y~VRPn-~----GiL~Pgesi~V~Vtl 142 (264)
.+...+..+.|+|.+..+ |.||+-==+..-+-|.|. . =+|.+++++.|.-+.
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 355677999999999986 889987767777888765 1 248888887776554
No 45
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=21.04 E-value=83 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.6
Q ss_pred EEEEEcCCCCeEEEEEeeCCC
Q 024677 98 AVRLKNTSKSHVAFKFQTTAP 118 (264)
Q Consensus 98 ~LtLtN~S~~~VAFKVKTTaP 118 (264)
.|+++..+.+.|.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 678888888899999998766
No 46
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=20.61 E-value=60 Score=25.57 Aligned_cols=62 Identities=6% Similarity=0.123 Sum_probs=36.0
Q ss_pred cEEeeCCCceEeeCCCC-CeeEEEEEEEcCCCCe-----EEEEEeeCCC--------------cceEe--eC----Ceee
Q 024677 76 RLRLDPSNNLYFPYEPG-KQTRSAVRLKNTSKSH-----VAFKFQTTAP--------------KSCYM--RP----PGGV 129 (264)
Q Consensus 76 ~L~IdP~~eL~F~~e~~-k~vss~LtLtN~S~~~-----VAFKVKTTaP--------------k~Y~V--RP----n~Gi 129 (264)
.+.++|. +|..+ .| +. -+|+|+|..+-+ --|-|-+... ..|.- .+ ...+
T Consensus 12 ~m~F~p~-~i~V~--~G~~~--vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~ 86 (129)
T 1cuo_A 12 TMTYSTR-SISVP--ASCAE--FTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPI 86 (129)
T ss_dssp SSCCSCS-EEEEE--TTCSE--EEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCC
T ss_pred CceEccC-eEEEc--CCCeE--EEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeE
Confidence 4677774 55554 45 54 489999997532 3344433220 01110 11 2357
Q ss_pred eCCCCeEEEEEEe
Q 024677 130 LAPGDSIIATVFK 142 (264)
Q Consensus 130 L~Pgesi~V~Vtl 142 (264)
|.||++..|++..
T Consensus 87 l~pGet~svtf~~ 99 (129)
T 1cuo_A 87 IGGGEKTSVKFKV 99 (129)
T ss_dssp BCTTCEEEEEEEG
T ss_pred ECCCCEEEEEEec
Confidence 9999999999875
No 47
>3qs2_A Fimbrillin MATB homolog; pilin, IG-like fold, biofilms, adhesion, immunoglobulin-like major pilin domain involved in biofilms; 1.78A {Escherichia coli}
Probab=20.49 E-value=32 Score=29.43 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCCCcEEeeCCCceEeeCCCCC------eeEEEEEEEcCCCCeEEEEEe
Q 024677 72 PPRRRLRLDPSNNLYFPYEPGK------QTRSAVRLKNTSKSHVAFKFQ 114 (264)
Q Consensus 72 p~~~~L~IdP~~eL~F~~e~~k------~vss~LtLtN~S~~~VAFKVK 114 (264)
.+...|.|.|.+-|.|.|..|- ..-.-|.|.-- ..--+||++
T Consensus 33 DTtS~LVVTPl~SLtF~Yaeg~k~FNtq~G~FDVaI~Gd-asATdF~Lt 80 (188)
T 3qs2_A 33 DTTSKLVVTPLGSLAFQYAEGIKGFNSQKGLFDVAIEGD-STATAFKLT 80 (188)
T ss_dssp SCCCSEEEEETTCEEEEEETTTTEECCEEEEEEEEEECC-TTCCEEEEE
T ss_pred cccceEEEccccceEEEehhccccccccCccEEEEeccc-cccceeEEE
Confidence 3568899999999999975442 12245566555 345567655
Done!