BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024678
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CSK|A Chain A, Structure Of Dpp Iii From Saccharomyces Cerevisiae
Length = 711
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 59 EIKLSAKTGMLFLYTPSFLAGLASFWLFPHEGFRFMLLTSALTVHFFKRIVEVLFIHKYS 118
+I +TG+ Y FL+ L +F F F V FFK+++E+ I+ S
Sbjct: 77 DITQKQQTGLYLEYVSQFLSNLGNFKSFGDTKF-----IPRCEVKFFKQLLELAKINPSS 131
Query: 119 SGMVLDSAIV 128
S + L V
Sbjct: 132 SPLTLSPVDV 141
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 184 GEKEYKIPTSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCYAIGVTFYLMGRSYATRA 243
G+KEY I + LF CP + G ++A F IG+ +M RS R
Sbjct: 172 GDKEYCISSDDLFSLPYCPGKTLVV----GASYVALECAGFLAGIGLDVTVMVRSILLRG 227
Query: 244 WYLSKFEDFPKHVKS 258
+ +H++
Sbjct: 228 FDQDMANKIGEHMEE 242
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 184 GEKEYKIPTSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCYAIGVTFYLMGRSYATRA 243
G+KEY I + LF CP + G ++A F IG+ +M RS R
Sbjct: 172 GDKEYCISSDDLFSLPYCPGKTLVV----GASYVALECAGFLAGIGLDVTVMVRSILLRG 227
Query: 244 WYLSKFEDFPKHVKS 258
+ +H++
Sbjct: 228 FDQDMANKIGEHMEE 242
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 184 GEKEYKIPTSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCYAIGVTFYLMGRSYATRA 243
G+KEY I + LF CP + G ++A F IG+ +M RS R
Sbjct: 194 GDKEYCISSDDLFSLPYCPGKTLVV----GASYVALECAGFLAGIGLDVTVMVRSILLRG 249
Query: 244 WYLSKFEDFPKHVKS 258
+ +H++
Sbjct: 250 FDQDMANKIGEHMEE 264
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 184 GEKEYKIPTSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCYAIGVTFYLMGRSYATRA 243
G+KEY I + LF CP + G ++A F IG+ +M RS R
Sbjct: 192 GDKEYCISSDDLFSLPYCPGKTLVV----GASYVALECAGFLAGIGLDVTVMVRSILLRG 247
Query: 244 WYLSKFEDFPKHVKS 258
+ +H++
Sbjct: 248 FDQDMANKIGEHMEE 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.143 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,413,264
Number of Sequences: 62578
Number of extensions: 283456
Number of successful extensions: 553
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 7
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)