Query 024678
Match_columns 264
No_of_seqs 227 out of 1016
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.5 1.4E-12 4.7E-17 112.3 16.0 110 154-264 76-194 (194)
2 1rpq_W Peptide E131; receptor- 16.3 44 0.0015 18.4 0.7 10 199-208 1-10 (26)
3 2k9j_B Integrin beta-3; transm 15.3 1.9E+02 0.0066 18.0 3.7 22 10-31 4-25 (43)
4 4gnt_B Carbohydrate-responsive 8.1 1E+02 0.0036 17.0 0.5 7 67-73 13-19 (26)
5 2knc_B Integrin beta-3; transm 6.3 4.2E+02 0.014 18.5 3.1 19 10-28 5-23 (79)
6 1rzh_L Reaction center protein 4.9 8.5E+02 0.029 21.3 4.8 29 185-217 6-39 (281)
7 2fnj_C Transcription elongatio 4.5 4.2E+02 0.014 18.8 2.2 20 187-206 76-95 (96)
8 3jtz_A Integrase; four strande 4.4 3.4E+02 0.012 19.1 1.6 30 173-203 4-33 (88)
9 1a05_A IPMDH, IMDH, 3-isopropy 4.1 2.5E+02 0.0084 25.5 0.7 23 195-217 234-256 (358)
10 1w0d_A 3-isopropylmalate dehyd 4.0 2.6E+02 0.0088 25.2 0.7 23 195-217 224-246 (337)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.47 E-value=1.4e-12 Score=112.25 Aligned_cols=110 Identities=14% Similarity=0.203 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHc-ccc--CCCcccccccccccCcccccchhhHHHHHHHHHHHhhHHHHHHH--HH
Q 024678 154 DLKFLGMILFLLGISGNFYHHNLLSK-MRR--NGEKEYKIPTSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCY--AI 228 (264)
Q Consensus 154 ~~~~~g~~lf~~g~~~n~~~h~~L~~-LR~--~~~~~y~iP~gglF~~VscPnY~~Eil~w~g~al~~~~~~~~~f--~~ 228 (264)
...++|+++++.|......+|.+|.+ .+. +.+++.++.+.|+|++++||||+||++.|+|++++++++.+++. ..
T Consensus 76 ~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~ 155 (194)
T 4a2n_B 76 SIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVA 155 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35689999999999999999999954 443 33567899999999999999999999999999999988766542 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----ccCCCCcceeecccC
Q 024678 229 GVTFYLMGRSYATRAWYLSKF----EDFPKHVKSIFPYIF 264 (264)
Q Consensus 229 ~~~~~l~~rA~~~h~wY~~kF----~~yp~~RkalIPfI~ 264 (264)
++.. +..|....+++.+++| +||.++++++||+|.
T Consensus 156 ~~~~-~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 156 WAIL-YFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHH-HHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 3333 3356665666666666 457788889999974
No 2
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=16.34 E-value=44 Score=18.42 Aligned_cols=10 Identities=50% Similarity=1.401 Sum_probs=7.2
Q ss_pred ccccchhhHH
Q 024678 199 VVCPHYLFEI 208 (264)
Q Consensus 199 VscPnY~~Ei 208 (264)
|.|||+..|.
T Consensus 1 vqcphfcyel 10 (26)
T 1rpq_W 1 VQCPHFCYEL 10 (26)
T ss_dssp CCCCTHHHHS
T ss_pred CCCCeeeeec
Confidence 5688887763
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=15.35 E-value=1.9e+02 Score=17.98 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=13.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 024678 10 PLPPSLFIKTMCVVNVVTMANL 31 (264)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l 31 (264)
|+|++.....+.+++.+.++++
T Consensus 4 p~~~n~~~Iv~gvi~~ivliGl 25 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLIGL 25 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHHHH
Confidence 5667777666666665555544
No 4
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=8.12 E-value=1e+02 Score=17.03 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=4.8
Q ss_pred hhhhhhh
Q 024678 67 GMLFLYT 73 (264)
Q Consensus 67 ~w~~~~~ 73 (264)
+|.+||.
T Consensus 13 awyiqyv 19 (26)
T 4gnt_B 13 AWYIQYV 19 (26)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6777765
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.27 E-value=4.2e+02 Score=18.54 Aligned_cols=19 Identities=11% Similarity=0.399 Sum_probs=8.1
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 024678 10 PLPPSLFIKTMCVVNVVTM 28 (264)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (264)
|+|+.....++.+++.+.+
T Consensus 5 p~~~n~~~Iv~gvi~gill 23 (79)
T 2knc_B 5 SKGPDILVVLLSVMGAILL 23 (79)
T ss_dssp CSSSCSHHHHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHH
Confidence 3444444444444443333
No 6
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L* 1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L* 1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L* 1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Probab=4.94 E-value=8.5e+02 Score=21.32 Aligned_cols=29 Identities=38% Similarity=0.785 Sum_probs=19.6
Q ss_pred Cccccccc-----ccccCcccccchhhHHHHHHHHHHH
Q 024678 185 EKEYKIPT-----SGLFDKVVCPHYLFEILGFWGIFFI 217 (264)
Q Consensus 185 ~~~y~iP~-----gglF~~VscPnY~~Eil~w~g~al~ 217 (264)
|+||+++. |.+||+...|=|.| |+|...+
T Consensus 6 e~~yr~r~~tl~gg~~~d~~~GpiYlG----~fGv~s~ 39 (281)
T 1rzh_L 6 ERKYRVPGGTLVGGNLFDFWVGPFYVG----FFGVATF 39 (281)
T ss_dssp TGGGCCSCCCSSSTTTTCCEETTEECH----HHHHHHH
T ss_pred hhhhhccCceeecccccccEEcCEEEe----hHHHHHH
Confidence 34566554 57999999999976 4555433
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=4.55 E-value=4.2e+02 Score=18.76 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=16.9
Q ss_pred ccccccccccCcccccchhh
Q 024678 187 EYKIPTSGLFDKVVCPHYLF 206 (264)
Q Consensus 187 ~y~iP~gglF~~VscPnY~~ 206 (264)
..+++++-+|+.+..+||+.
T Consensus 76 ~w~vd~~~l~eLi~AAnyLd 95 (96)
T 2fnj_C 76 EFPIAPEIALELLMAANFLD 95 (96)
T ss_dssp CCCCCTTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHhC
Confidence 45789999999999999973
No 8
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=4.44 E-value=3.4e+02 Score=19.14 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHccccCCCcccccccccccCcccccc
Q 024678 173 HHNLLSKMRRNGEKEYKIPTSGLFDKVVCPH 203 (264)
Q Consensus 173 ~h~~L~~LR~~~~~~y~iP~gglF~~VscPn 203 (264)
+|.++++++. +++.|++.+|+.+.....|+
T Consensus 4 T~~~i~~~kp-~~k~~~~~Dg~GL~L~V~ps 33 (88)
T 3jtz_A 4 TDAKIRTLKP-SDKPFKVSDSHGLYLLVKPG 33 (88)
T ss_dssp CHHHHHHCCC-CSSCEEEECSTTEEEEECTT
T ss_pred CHHHHhcCCC-CCCcEEEecCCceEEEEecC
Confidence 4667778863 45778888876666555554
No 9
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=4.12 E-value=2.5e+02 Score=25.55 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.9
Q ss_pred ccCcccccchhhHHHHHHHHHHH
Q 024678 195 LFDKVVCPHYLFEILGFWGIFFI 217 (264)
Q Consensus 195 lF~~VscPnY~~Eil~w~g~al~ 217 (264)
-|+-+.|+|+||+|+.=.+=++.
T Consensus 234 ~FDVivt~NlfGDIlSD~aa~l~ 256 (358)
T 1a05_A 234 QFDVLLTGNMFGDILSDEASQLT 256 (358)
T ss_dssp GCSEEEECHHHHHHHHHHHHHTT
T ss_pred cccEEEecCcccHhHHHHHHhhc
Confidence 48999999999999987665544
No 10
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=3.97 E-value=2.6e+02 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.1
Q ss_pred ccCcccccchhhHHHHHHHHHHH
Q 024678 195 LFDKVVCPHYLFEILGFWGIFFI 217 (264)
Q Consensus 195 lF~~VscPnY~~Eil~w~g~al~ 217 (264)
-|+-+.|||+||+|+.=.+=.+.
T Consensus 224 ~FDVivt~NlfGDIlSD~aa~l~ 246 (337)
T 1w0d_A 224 RFDVIVTDNLFGDIITDLAAAVC 246 (337)
T ss_dssp GCSEEEECHHHHHHHHHHHHHHT
T ss_pred cccEEEECcchhHHHHHHHhhhc
Confidence 38899999999999987766554
Done!