Query 024678
Match_columns 264
No_of_seqs 227 out of 1016
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 12:30:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024678.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024678hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 9.0 1.5E+02 0.011 16.2 2.9 26 13-47 3-28 (34)
2 d2c9wc1 d.42.1.1 (C:17-112) El 4.4 1.1E+02 0.0078 20.3 0.7 19 187-205 76-94 (96)
3 d1j32a_ c.67.1.1 (A:) Aspartat 3.8 2.6E+02 0.019 22.3 2.9 25 180-204 307-331 (388)
4 d3e46a1 a.5.2.1 (A:157-198) Ub 3.6 1.3E+02 0.0096 16.9 0.4 12 199-210 1-12 (42)
5 d1hv2a_ d.42.1.1 (A:) Elongin 3.5 2.6E+02 0.019 18.2 2.1 45 161-205 53-97 (99)
6 d1v53a1 c.77.1.1 (A:1-356) 3-i 3.2 1.7E+02 0.012 24.1 1.0 24 194-217 233-256 (356)
7 d1a05a_ c.77.1.1 (A:) 3-isopro 3.1 1.7E+02 0.013 24.1 0.9 24 194-217 233-256 (357)
8 d1xi9a_ c.67.1.1 (A:) Putative 3.1 2.6E+02 0.019 22.4 2.1 27 178-204 310-336 (395)
9 d1e7la1 a.140.4.1 (A:104-157) 3.0 2.6E+02 0.019 16.8 1.4 13 201-213 2-14 (54)
10 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 2.9 4.6E+02 0.033 16.1 2.9 18 237-254 55-72 (80)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.04 E-value=1.5e+02 Score=16.24 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCcc
Q 024678 13 PSLFIKTMCVVNVVTMANLGYSEIKGKHLKYSKFW 47 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~YGk~~ 47 (264)
|-|.+.++.-+++++++.+.| ||-|.
T Consensus 3 PLWlv~tv~G~~vi~~vG~Ff---------YGsYs 28 (34)
T d2axtj1 3 PLWIVATVAGMGVIVIVGLFF---------YGAYA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---------HHTTT
T ss_pred cEEEeeehhhhhhHhheeeee---------eeeec
Confidence 346666666777777777777 88773
No 2
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.42 E-value=1.1e+02 Score=20.32 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=14.9
Q ss_pred ccccccccccCcccccchh
Q 024678 187 EYKIPTSGLFDKVVCPHYL 205 (264)
Q Consensus 187 ~y~iP~gglF~~VscPnY~ 205 (264)
...||+.-+|+.+..+||+
T Consensus 76 ~fdi~~~~l~eLi~AAnyL 94 (96)
T d2c9wc1 76 EFPIAPEIALELLMAANFL 94 (96)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhhh
Confidence 4668888888888888886
No 3
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}
Probab=3.83 E-value=2.6e+02 Score=22.29 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=17.6
Q ss_pred cccCCCcccccccccccCcccccch
Q 024678 180 MRRNGEKEYKIPTSGLFDKVVCPHY 204 (264)
Q Consensus 180 LR~~~~~~y~iP~gglF~~VscPnY 204 (264)
|++-+.-....|+||+|-|+.+|+-
T Consensus 307 l~~~~g~~~~~p~gg~~l~~~l~~~ 331 (388)
T d1j32a_ 307 LNAMPGLECPKPDGAFYMFPSIAKT 331 (388)
T ss_dssp HHTCTTCBCCCCCBTTEECCBCGGG
T ss_pred HHhCCCCEecCCCceEEEEEECCCC
Confidence 3333334566789999999999874
No 4
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.59 E-value=1.3e+02 Score=16.94 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=8.2
Q ss_pred ccccchhhHHHH
Q 024678 199 VVCPHYLFEILG 210 (264)
Q Consensus 199 VscPnY~~Eil~ 210 (264)
||+|.|...|=-
T Consensus 1 vsspeyt~kidk 12 (42)
T d3e46a1 1 VSSPEYTKKIEN 12 (42)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 577888777643
No 5
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.47 E-value=2.6e+02 Score=18.22 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHccccCCCcccccccccccCcccccchh
Q 024678 161 ILFLLGISGNFYHHNLLSKMRRNGEKEYKIPTSGLFDKVVCPHYL 205 (264)
Q Consensus 161 ~lf~~g~~~n~~~h~~L~~LR~~~~~~y~iP~gglF~~VscPnY~ 205 (264)
+|=.+-.+.+++.+.-..+-.++.-.+..+++.-+|+.+..+||+
T Consensus 53 iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyL 97 (99)
T d1hv2a_ 53 ILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhh
Confidence 333333444555444332221111134567777788888888876
No 6
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]}
Probab=3.22 E-value=1.7e+02 Score=24.06 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=19.0
Q ss_pred cccCcccccchhhHHHHHHHHHHH
Q 024678 194 GLFDKVVCPHYLFEILGFWGIFFI 217 (264)
Q Consensus 194 glF~~VscPnY~~Eil~w~g~al~ 217 (264)
+-|+-+.|||++|+|+.=++-.+.
T Consensus 233 ~~fdViv~~Nl~GDIlSDl~a~l~ 256 (356)
T d1v53a1 233 GQFDVIVTENMFGDILSDEASVIT 256 (356)
T ss_dssp GGCSEEEECHHHHHHHHHHHTTTT
T ss_pred cccceeechHHHHHHHHHHHHHHh
Confidence 448999999999999976655444
No 7
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=3.11 E-value=1.7e+02 Score=24.11 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.2
Q ss_pred cccCcccccchhhHHHHHHHHHHH
Q 024678 194 GLFDKVVCPHYLFEILGFWGIFFI 217 (264)
Q Consensus 194 glF~~VscPnY~~Eil~w~g~al~ 217 (264)
+-|+-+.|||++|+|+.=++=.+.
T Consensus 233 ~~fdViv~~Nl~GDIlSDl~a~l~ 256 (357)
T d1a05a_ 233 AQFDVLLTGNMFGDILSDEASQLT 256 (357)
T ss_dssp GGCSEEEECHHHHHHHHHHHHHTT
T ss_pred ccccEEechHHHHHHHHHHHHHHh
Confidence 449999999999999988776655
No 8
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.06 E-value=2.6e+02 Score=22.42 Aligned_cols=27 Identities=4% Similarity=-0.087 Sum_probs=18.8
Q ss_pred HccccCCCcccccccccccCcccccch
Q 024678 178 SKMRRNGEKEYKIPTSGLFDKVVCPHY 204 (264)
Q Consensus 178 ~~LR~~~~~~y~iP~gglF~~VscPnY 204 (264)
..|++-+......|+||.|=|+.+|..
T Consensus 310 ~~L~~~~~~~~~~p~gg~~~~~~l~~~ 336 (395)
T d1xi9a_ 310 KRLNEIPGISTTKPQGAFYIFPKIEVG 336 (395)
T ss_dssp HHHHTSTTEECCCCCBSSEECCEECSC
T ss_pred HHHHhCCCceecCCCeeEEEeEECCCC
Confidence 334443444567799999999998864
No 9
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=2.95 E-value=2.6e+02 Score=16.84 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=9.9
Q ss_pred ccchhhHHHHHHH
Q 024678 201 CPHYLFEILGFWG 213 (264)
Q Consensus 201 cPnY~~Eil~w~g 213 (264)
||||.++..-|++
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 7888888777765
No 10
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.88 E-value=4.6e+02 Score=16.14 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhCccCCC
Q 024678 237 RSYATRAWYLSKFEDFPK 254 (264)
Q Consensus 237 rA~~~h~wY~~kF~~yp~ 254 (264)
.|....+.|.+++++|..
T Consensus 55 ~A~~~k~~y~~~~p~Yk~ 72 (80)
T d1gt0d_ 55 EAKRLRALHMKEHPDYKY 72 (80)
T ss_dssp HHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHCccccC
Confidence 466667789999998863
Done!