Query 024679
Match_columns 264
No_of_seqs 169 out of 1372
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 6.8E-45 1.5E-49 324.8 15.2 210 11-252 3-212 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.8 7.2E-21 1.6E-25 145.3 5.8 86 16-104 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 4.8E-20 1E-24 140.7 5.8 86 138-252 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.4 5.1E-13 1.1E-17 120.0 4.6 89 14-105 125-213 (243)
5 COG4095 Uncharacterized conser 99.2 9.4E-11 2E-15 89.5 7.6 84 13-102 4-87 (89)
6 COG4095 Uncharacterized conser 99.1 5.9E-11 1.3E-15 90.6 4.3 83 136-250 5-87 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.4 5.3E-06 1.2E-10 74.0 12.2 188 18-241 5-213 (220)
8 PF04193 PQ-loop: PQ loop repe 98.0 2E-05 4.4E-10 55.8 5.7 54 19-74 4-57 (61)
9 PF04193 PQ-loop: PQ loop repe 97.5 0.00015 3.3E-09 51.3 3.8 43 183-225 17-59 (61)
10 KOG3211 Predicted endoplasmic 96.3 0.042 9.1E-07 48.8 10.0 178 32-251 46-226 (230)
11 KOG2913 Predicted membrane pro 95.8 0.12 2.5E-06 47.5 11.0 57 15-73 7-63 (260)
12 PRK01021 lpxB lipid-A-disaccha 95.0 0.37 8.1E-06 49.2 12.5 53 191-243 162-214 (608)
13 TIGR00951 2A43 Lysosomal Cysti 95.0 0.028 6.1E-07 50.2 4.0 35 183-217 19-53 (220)
14 smart00679 CTNS Repeated motif 94.3 0.042 9.2E-07 33.7 2.4 28 31-58 2-29 (32)
15 smart00679 CTNS Repeated motif 91.2 0.073 1.6E-06 32.6 0.3 28 183-210 3-30 (32)
16 PHA02246 hypothetical protein 88.2 16 0.00034 31.4 15.0 71 20-93 8-79 (192)
17 KOG1589 Uncharacterized conser 85.7 0.58 1.3E-05 37.6 2.1 73 27-105 33-105 (118)
18 PF03650 MPC: Uncharacterised 85.2 0.21 4.6E-06 40.6 -0.5 79 19-103 21-99 (119)
19 PHA02246 hypothetical protein 85.2 4.4 9.6E-05 34.7 7.3 58 24-83 116-173 (192)
20 PF03650 MPC: Uncharacterised 84.8 0.4 8.6E-06 39.1 0.8 64 193-256 39-104 (119)
21 PF10688 Imp-YgjV: Bacterial i 80.3 19 0.00041 30.6 9.5 37 205-241 118-154 (163)
22 COG3952 Predicted membrane pro 66.5 3.1 6.8E-05 33.2 1.2 62 188-249 45-106 (113)
23 KOG3145 Cystine transporter Cy 63.3 92 0.002 29.6 10.3 83 181-263 277-371 (372)
24 PF07578 LAB_N: Lipid A Biosyn 62.8 11 0.00024 28.1 3.5 55 30-88 11-65 (72)
25 PF07578 LAB_N: Lipid A Biosyn 60.1 7.7 0.00017 28.9 2.2 45 192-236 21-65 (72)
26 KOG1589 Uncharacterized conser 59.2 2.4 5.1E-05 34.1 -0.7 58 193-250 43-102 (118)
27 KOG3211 Predicted endoplasmic 57.2 16 0.00034 32.8 4.0 72 29-102 154-225 (230)
28 KOG2913 Predicted membrane pro 49.5 33 0.00072 31.6 5.1 42 183-224 24-65 (260)
29 PF05602 CLPTM1: Cleft lip and 44.0 44 0.00096 32.7 5.4 71 20-92 305-375 (438)
30 PF10688 Imp-YgjV: Bacterial i 39.8 15 0.00032 31.3 1.1 36 54-92 118-153 (163)
31 PF07857 DUF1632: CEO family ( 34.6 70 0.0015 29.3 4.7 72 136-230 180-254 (254)
32 COG3952 Predicted membrane pro 25.6 3.1E+02 0.0067 22.1 6.3 78 14-98 26-103 (113)
33 KOG4314 Predicted carbohydrate 24.8 1.9E+02 0.0042 26.1 5.6 23 130-152 126-148 (290)
34 PHA03049 IMV membrane protein; 24.5 52 0.0011 24.2 1.6 28 232-259 8-35 (68)
35 PRK01021 lpxB lipid-A-disaccha 23.8 4.4E+02 0.0094 27.4 8.7 78 14-98 140-217 (608)
36 KOG3618 Adenylyl cyclase [Gene 21.5 1.1E+03 0.024 25.9 11.3 32 32-74 73-104 (1318)
37 cd08764 Cyt_b561_CG1275_like N 21.5 4.5E+02 0.0099 23.4 7.4 15 228-242 175-189 (214)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=6.8e-45 Score=324.76 Aligned_cols=210 Identities=41% Similarity=0.694 Sum_probs=185.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHH
Q 024679 11 SGCSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQL 90 (264)
Q Consensus 11 ~~~~~i~gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~ 90 (264)
+....++|..|++.++++|++|+|+++||+|+||+|+.+..||+++++||.+|+.|| .+.+|+..++.+|++|+++++
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999 566623789999999999999
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhheeecccchhhhhhHHHHHHHHHHhhhhhHHHhhcCcchhhHHH
Q 024679 91 IYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIVSSSGTQAFRLL 170 (264)
Q Consensus 91 ~yl~vy~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~pl~~~~~~~~~~~~~~~ 170 (264)
+|+..|+.|+++|++.+....+ -...+.+.++++....++++.+.+.+|.+|++++++||+|||..|
T Consensus 81 ~Yi~~f~~ya~~k~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m------------ 147 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVKIVLAL-VLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVI------------ 147 (243)
T ss_pred HHHHHHheecCchheeEeeehH-HHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhh------------
Confidence 9999999999998843322111 111122233455666788888899999999999999999999999
Q ss_pred hhhhccccccchhhhhhceeeecCCccccChHHHHHHHHHHHHHHHHhcccCCceeeechhhHHHHHHHHhhheeeeeCC
Q 024679 171 RLHISLHSYGCMYIFMQKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTK 250 (264)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~Virtkst~~ip~~~~~~~~~n~~lW~~YGll~~D~~IiipN~iG~~l~~~ql~l~~~y~~~ 250 (264)
|+|+|+||+|.||++++++.++++..|++||++.+|.++.+||++|+.++++|+.+|++||++
T Consensus 148 -----------------~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~ 210 (243)
T KOG1623|consen 148 -----------------RKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKT 210 (243)
T ss_pred -----------------hhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 024679 251 SG 252 (264)
Q Consensus 251 ~~ 252 (264)
+.
T Consensus 211 ~~ 212 (243)
T KOG1623|consen 211 TE 212 (243)
T ss_pred cc
Confidence 64
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.83 E-value=7.2e-21 Score=145.31 Aligned_cols=86 Identities=27% Similarity=0.614 Sum_probs=82.4
Q ss_pred HHhHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHHhh
Q 024679 16 AAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSI 95 (264)
Q Consensus 16 i~gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl~v 95 (264)
++|.+|.++++++++||+|+++|++|+||+|++|+.|+++.++||.+|+.|| ++.+| ++++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999999 88888 58999999999999999999
Q ss_pred hhhhhhhhh
Q 024679 96 FISYAEKAI 104 (264)
Q Consensus 96 y~~y~~~k~ 104 (264)
|++|+++||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999999875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.80 E-value=4.8e-20 Score=140.75 Aligned_cols=86 Identities=37% Similarity=0.524 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHhhhhhHHHhhcCcchhhHHHhhhhccccccchhhhhhceeeecCCccccChHHHHHHHHHHHHHHHH
Q 024679 138 FVGYLSVASLISMFASPLFIIVSSSGTQAFRLLRLHISLHSYGCMYIFMQKLVIKTRSVEFMPFYLSLSNFLMSLSFLAY 217 (264)
Q Consensus 138 ~~g~~~~~~~i~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Virtkst~~ip~~~~~~~~~n~~lW~~Y 217 (264)
++|.++..+++.+++||+.++ ++++|+|+++++|..+++++++|+.+|+.|
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i-----------------------------~~v~k~ks~~~~~~~~~~~~~~~~~~W~~Y 52 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQI-----------------------------RQVIKTKSTGSVSFPPFLAMFFNCVLWLIY 52 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHH-----------------------------HHHHhCCCCCccceehhHHHhhhccHhhhh
Confidence 579999999999999999999 999999999999999999999999999999
Q ss_pred hcccCCceeeechhhHHHHHHHHhhheeeeeCCCC
Q 024679 218 GMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTKSG 252 (264)
Q Consensus 218 Gll~~D~~IiipN~iG~~l~~~ql~l~~~y~~~~~ 252 (264)
|++++|++++++|++|..++..|+.+|++|+++||
T Consensus 53 G~l~~d~~i~~~N~~g~~~~~~~~~~~~~y~~~~~ 87 (87)
T PF03083_consen 53 GILINDWPIIVPNVFGLVLSIIYLVVYYIYPSKKK 87 (87)
T ss_pred hhhcCCeeEEeeHHHHHHHHHHHHhheEEeCCCCC
Confidence 99999999999999999999999999999998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.36 E-value=5.1e-13 Score=120.03 Aligned_cols=89 Identities=22% Similarity=0.435 Sum_probs=82.9
Q ss_pred HHHHhHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHH
Q 024679 14 SVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYV 93 (264)
Q Consensus 14 ~~i~gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl 93 (264)
...+|.++..++++||.||+..+++++|+||+|.+|+......++++..|+.|| ++.+| +.+..+|.+|..++..++
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYG--lli~D-~~IaipN~iG~~l~~~QL 201 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYG--LLIKD-FFIAIPNVLGFLLGLIQL 201 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHH--HHhcC-eEEEcccHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999 77788 778999999999999999
Q ss_pred hhhhhhhhhhhH
Q 024679 94 SIFISYAEKAIK 105 (264)
Q Consensus 94 ~vy~~y~~~k~~ 105 (264)
.+|++|++++.+
T Consensus 202 ~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 202 ILYFKYPKTTEK 213 (243)
T ss_pred HHhhhcCCCccc
Confidence 999999877643
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=9.4e-11 Score=89.47 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=71.8
Q ss_pred hHHHHhHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHH
Q 024679 13 CSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIY 92 (264)
Q Consensus 13 ~~~i~gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~y 92 (264)
..++.|..|++.+.. +.+||..+++|+|+++++|+.++......+.+|+.|| ++.+| .|+...|.++..++..-
T Consensus 4 ~~~viG~ia~ilttf---~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~liI 77 (89)
T COG4095 4 FIEVIGTIAGILTTF---AFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLII 77 (89)
T ss_pred hhhhHHHHHHHHHHH---HHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHHH
Confidence 356666666666554 4699999999999999999999999999999999999 88888 79999999999999988
Q ss_pred Hhhhhhhhhh
Q 024679 93 VSIFISYAEK 102 (264)
Q Consensus 93 l~vy~~y~~~ 102 (264)
+....+|..+
T Consensus 78 l~~kI~~~~k 87 (89)
T COG4095 78 LFYKIKYILK 87 (89)
T ss_pred HHHHHHHHHh
Confidence 8777776433
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=5.9e-11 Score=90.57 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=74.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHhhcCcchhhHHHhhhhccccccchhhhhhceeeecCCccccChHHHHHHHHHHHHHH
Q 024679 136 RLFVGYLSVASLISMFASPLFIIVSSSGTQAFRLLRLHISLHSYGCMYIFMQKLVIKTRSVEFMPFYLSLSNFLMSLSFL 215 (264)
Q Consensus 136 ~~~~g~~~~~~~i~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Virtkst~~ip~~~~~~~~~n~~lW~ 215 (264)
.+.+|++++..+.++ |+||-.+++|+||++++++.++....+..++|+
T Consensus 5 ~~viG~ia~ilttf~--------------------------------flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwl 52 (89)
T COG4095 5 IEVIGTIAGILTTFA--------------------------------FLPQLIKIIKTKNTASISLPMFIILNIALFLWL 52 (89)
T ss_pred hhhHHHHHHHHHHHH--------------------------------HHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 467888888888777 466669999999999999999999999999999
Q ss_pred HHhcccCCceeeechhhHHHHHHHHhhheeeeeCC
Q 024679 216 AYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYSTK 250 (264)
Q Consensus 216 ~YGll~~D~~IiipN~iG~~l~~~ql~l~~~y~~~ 250 (264)
.||++++|.++.+.|.+++.++..-+....+|..|
T Consensus 53 iygILi~~lPii~aN~i~~il~liIl~~kI~~~~k 87 (89)
T COG4095 53 IYGILINDLPIIIANIISFILSLIILFYKIKYILK 87 (89)
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888777644
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.38 E-value=5.3e-06 Score=74.02 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHh--------hcccccCCceEEEee----chhh
Q 024679 18 GVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWY--------GMPLVSPGIILVATV----NSVG 85 (264)
Q Consensus 18 gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~Y--------G~~~l~~d~~~li~~----N~iG 85 (264)
..+|.+..++-..+.+||+++.+|+||++++|+..+..-..+...|..| . . .++ .+.-.+ |-+-
T Consensus 5 ~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~--~-~~~-~~~~~~~v~~edl~ 80 (220)
T TIGR00951 5 QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS--I-TNE-FPLSSPGVTQNDVF 80 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh--h-hhc-cccccCCCcHHHHH
Confidence 3455555556666789999999999999999999999999999999999 4 2 222 222111 3232
Q ss_pred hHHHHHH-----HhhhhhhhhhhhHH--HHHHHHH-HHHHHHHHHHhhhheeecccchhhhhhHHHHHHHHHHhhhhhHH
Q 024679 86 AVFQLIY-----VSIFISYAEKAIKL--KISGLLI-AVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFI 157 (264)
Q Consensus 86 l~l~~~y-----l~vy~~y~~~k~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~pl~~ 157 (264)
..++... ..-+.+|.++.+|. +..+.+. .....+............+.+....++.+-...++ .
T Consensus 81 ~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~---i----- 152 (220)
T TIGR00951 81 FTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTL---V----- 152 (220)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---H-----
Confidence 2222211 12222232221111 1111111 11111111111111111222222233332222222 2
Q ss_pred HhhcCcchhhHHHhhhhccccccchhhhhhceeeecCCccccChHHHHHHHHHHHHHHHHhccc-CCceeeechhhHHHH
Q 024679 158 IVSSSGTQAFRLLRLHISLHSYGCMYIFMQKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK-DDPFIYVPNGIGTLL 236 (264)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Virtkst~~ip~~~~~~~~~n~~lW~~YGll~-~D~~IiipN~iG~~l 236 (264)
-|+||.+.-.|.|||++.|.......+.+++.-..-.... +|...+.--.++..+
T Consensus 153 ------------------------kyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~ 208 (220)
T TIGR00951 153 ------------------------KYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLF 208 (220)
T ss_pred ------------------------HHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566668889999999999999888888866655545433 566666666677766
Q ss_pred HHHHh
Q 024679 237 GIAQV 241 (264)
Q Consensus 237 ~~~ql 241 (264)
+.+-+
T Consensus 209 n~i~~ 213 (220)
T TIGR00951 209 NGLFA 213 (220)
T ss_pred HHHHH
Confidence 65533
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=97.96 E-value=2e-05 Score=55.83 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCC
Q 024679 19 VTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPG 74 (264)
Q Consensus 19 ilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d 74 (264)
.+|.+..++...+.+||+++.+|+||++++|...+.....+..+|+.|. +..++
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~ 57 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNY 57 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcC
Confidence 3445555556677899999999999999999999999999999999999 66654
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.46 E-value=0.00015 Score=51.31 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=38.8
Q ss_pred hhhhhceeeecCCccccChHHHHHHHHHHHHHHHHhcccCCce
Q 024679 183 YIFMQKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPF 225 (264)
Q Consensus 183 ~~~~~~~Virtkst~~ip~~~~~~~~~n~~lW~~YGll~~D~~ 225 (264)
++||..+.+|+|+++++++.+.....+++++|+.|.++.++.+
T Consensus 17 ~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 17 FLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5677799999999999999999999999999999999887643
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=96.30 E-value=0.042 Score=48.78 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=103.3
Q ss_pred cHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHHhhhhh-hhhhhh-HHHHH
Q 024679 32 PIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFIS-YAEKAI-KLKIS 109 (264)
Q Consensus 32 plp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl~vy~~-y~~~k~-~~~~~ 109 (264)
-+||+.+|+..||++++|...+..-+++-..-+.|. .+++.++.-.--..=+.++.+-+..+.. |+-... ..+..
T Consensus 46 KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~~~~~v~~l 122 (230)
T KOG3211|consen 46 KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQTVTVVQFL 122 (230)
T ss_pred hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHHHHHHHHHhccceeehhhHH
Confidence 699999999999999999999999999999999999 4455333323333334455444333332 221110 11112
Q ss_pred HHHHHHHHHHHHHHhhhheeecccchhhhhhHHHHHHHHHHhhhhhHHHhhcCcchhhHHHhhhhccccccchhhhhhce
Q 024679 110 GLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIVSSSGTQAFRLLRLHISLHSYGCMYIFMQKL 189 (264)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (264)
+....+...+.. ......++-...+...-..-.+-+.++ ..
T Consensus 123 ~~~~~v~~~~~s----------k~~p~~~~~L~~~~~l~i~v~sr~~Qi-----------------------------~~ 163 (230)
T KOG3211|consen 123 GYIALVVSVLAS----------KALPLWIITLAQNLCLPIVVVSRLLQI-----------------------------QC 163 (230)
T ss_pred HHHHHHHHHHHH----------hhhhHHHHHHHHhcCchhhhHHHHHHH-----------------------------HH
Confidence 211111111110 000111111111111111113444444 55
Q ss_pred eeecCCccccChHHHHHHHHHHHHHHHHhccc-CCceeeechhhHHHHHHHHhhheeeeeCCC
Q 024679 190 VIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFK-DDPFIYVPNGIGTLLGIAQVMLYSYYSTKS 251 (264)
Q Consensus 190 Virtkst~~ip~~~~~~~~~n~~lW~~YGll~-~D~~IiipN~iG~~l~~~ql~l~~~y~~~~ 251 (264)
-.|+|++..+++.....++-++.--..+.+.. +|.-++..=++...++..-..-..+|++++
T Consensus 164 n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 164 NYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 67999999999999999999999999999985 677777666666666655555555565543
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=95.80 E-value=0.12 Score=47.53 Aligned_cols=57 Identities=25% Similarity=0.248 Sum_probs=45.1
Q ss_pred HHHhHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccC
Q 024679 15 VAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSP 73 (264)
Q Consensus 15 ~i~gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~ 73 (264)
+.-..+|.+.+++-..+-+||+.+..|+||.+++|+.+.+.-+.....=+.|. .+.+
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~ 63 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQP 63 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhcc
Confidence 34455666666666777899999999999999999999988888877778888 4443
No 12
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.00 E-value=0.37 Score=49.18 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=44.0
Q ss_pred eecCCccccChHHHHHHHHHHHHHHHHhcccCCceeeechhhHHHHHHHHhhh
Q 024679 191 IKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVML 243 (264)
Q Consensus 191 irtkst~~ip~~~~~~~~~n~~lW~~YGll~~D~~IiipN~iG~~l~~~ql~l 243 (264)
-+++.-+.+|...-..++.++++=++|++.++|...++..+.|.+.-.--+.+
T Consensus 162 se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~l 214 (608)
T PRK01021 162 LEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRI 214 (608)
T ss_pred HHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHH
Confidence 34445556898888999999999999999999999999999999876666543
No 13
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=94.97 E-value=0.028 Score=50.20 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=32.5
Q ss_pred hhhhhceeeecCCccccChHHHHHHHHHHHHHHHH
Q 024679 183 YIFMQKLVIKTRSVEFMPFYLSLSNFLMSLSFLAY 217 (264)
Q Consensus 183 ~~~~~~~Virtkst~~ip~~~~~~~~~n~~lW~~Y 217 (264)
++||..+..|+||++++|+.......++...|..|
T Consensus 19 ~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 19 FYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 46777999999999999999999999999999999
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.26 E-value=0.042 Score=33.72 Aligned_cols=28 Identities=39% Similarity=0.348 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHhcCCCCccchhHHHHHH
Q 024679 31 SPIPTFRRILRNKSTEQFSGLPYICSLL 58 (264)
Q Consensus 31 Splp~i~~I~k~KSt~~is~lp~v~~~~ 58 (264)
+-+||+++.+|+||++++|...+.+.+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 5689999999999999999777665443
No 15
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=91.21 E-value=0.073 Score=32.64 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=23.3
Q ss_pred hhhhhceeeecCCccccChHHHHHHHHH
Q 024679 183 YIFMQKLVIKTRSVEFMPFYLSLSNFLM 210 (264)
Q Consensus 183 ~~~~~~~Virtkst~~ip~~~~~~~~~n 210 (264)
++||..+.+|+|+++++|+.+.+..+.+
T Consensus 3 ~~PQi~~~~~~ks~~glS~~~~~l~~~G 30 (32)
T smart00679 3 LLPQIIKNYRRKSTEGLSILFVLLWLLG 30 (32)
T ss_pred chhHHHHHHHcCCcCcCCHHHHHHHHhc
Confidence 5788899999999999998887755543
No 16
>PHA02246 hypothetical protein
Probab=88.15 E-value=16 Score=31.40 Aligned_cols=71 Identities=11% Similarity=0.235 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCC-ceEEEeechhhhHHHHHHH
Q 024679 20 TGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPG-IILVATVNSVGAVFQLIYV 93 (264)
Q Consensus 20 lg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d-~~~li~~N~iGl~l~~~yl 93 (264)
+....++.....-.|+.+.+.|.|+.+++| -.|+-......+--.|- .+..| .-.-+.+-+.-+.++++.+
T Consensus 8 ~s~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyN--lL~T~~~~fqi~svg~nl~lgivcL 79 (192)
T PHA02246 8 LSILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYN--LLLTDASVFQIVSVGLNLTLGIVCL 79 (192)
T ss_pred HHHHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHH--HHhcCCceEEEeeeehhhhhhhhhe
Confidence 444455566667899999999999999997 44555556666777788 44433 1112233333444555444
No 17
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=0.58 Score=37.55 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=58.4
Q ss_pred HHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHHhhhhhhhhhhhH
Q 024679 27 VLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIK 105 (264)
Q Consensus 27 ~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl~vy~~y~~~k~~ 105 (264)
++..+++.++ .|..|.+|...........++|..|++ .+++.++.++.+|.+=...+.+++.=.+.|....++
T Consensus 33 glv~AglaD~-----arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~~ 105 (118)
T KOG1589|consen 33 GLVIAGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQKA 105 (118)
T ss_pred hheeecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566665 478899999999999999999999995 455555789999999999999999988888544433
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=85.23 E-value=0.21 Score=40.63 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHHhhhhh
Q 024679 19 VTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFIS 98 (264)
Q Consensus 19 ilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl~vy~~ 98 (264)
..|-++.-++-++++-++ +|..+.+|..+-....+.+.+|..|++ .+++.++.++.+|.+-...+.+++.=++.
T Consensus 21 FWaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~ 94 (119)
T PF03650_consen 21 FWAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLN 94 (119)
T ss_pred eehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655566665 579999999999999999999999995 34555578999999999999999987777
Q ss_pred hhhhh
Q 024679 99 YAEKA 103 (264)
Q Consensus 99 y~~~k 103 (264)
|...+
T Consensus 95 y~~~~ 99 (119)
T PF03650_consen 95 YQYSQ 99 (119)
T ss_pred HHhhc
Confidence 75443
No 19
>PHA02246 hypothetical protein
Probab=85.21 E-value=4.4 Score=34.72 Aligned_cols=58 Identities=7% Similarity=0.090 Sum_probs=38.2
Q ss_pred HHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeech
Q 024679 24 FAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNS 83 (264)
Q Consensus 24 ~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~ 83 (264)
.++...++-+||+.+-+|+|++|+.|...|+....+-.+-..-- .+++...-++++..
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m--~Lthv~~hIiiTEf 173 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSM--VLTHTYVHIIATEF 173 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHH--hhhCCcceeeHHHH
Confidence 34445667899999999999999999988887655544433332 34444334444433
No 20
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=84.83 E-value=0.4 Score=39.09 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=55.4
Q ss_pred cCCccccChHHHHHHHHHHHHHHHHhccc--CCceeeechhhHHHHHHHHhhheeeeeCCCCCCCC
Q 024679 193 TRSVEFMPFYLSLSNFLMSLSFLAYGMFK--DDPFIYVPNGIGTLLGIAQVMLYSYYSTKSGEVSR 256 (264)
Q Consensus 193 tkst~~ip~~~~~~~~~n~~lW~~YGll~--~D~~IiipN~iG~~l~~~ql~l~~~y~~~~~~~~~ 256 (264)
+|..|.++..+..+-++.+.+|.=|.+.+ +|..+...|+.-...+..|+.=+..|...+++..+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~~ 104 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKEAK 104 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Confidence 58999999999999999999999999987 68888888999999999999988888766555443
No 21
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=80.30 E-value=19 Score=30.58 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcccCCceeeechhhHHHHHHHHh
Q 024679 205 LSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQV 241 (264)
Q Consensus 205 ~~~~~n~~lW~~YGll~~D~~IiipN~iG~~l~~~ql 241 (264)
....+++.+|..|+++.++++...-|......+...+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999998888888777666553
No 22
>COG3952 Predicted membrane protein [Function unknown]
Probab=66.54 E-value=3.1 Score=33.24 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=52.5
Q ss_pred ceeeecCCccccChHHHHHHHHHHHHHHHHhcccCCceeeechhhHHHHHHHHhhheeeeeC
Q 024679 188 KLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQVMLYSYYST 249 (264)
Q Consensus 188 ~~Virtkst~~ip~~~~~~~~~n~~lW~~YGll~~D~~IiipN~iG~~l~~~ql~l~~~y~~ 249 (264)
.-..+.++.+.+|.+.--++.+++.+-+.|.+-++|..-+..|+.|....+.-+-+...-++
T Consensus 45 w~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~ 106 (113)
T COG3952 45 WLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERR 106 (113)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 45567888888999999999999999999999999998888899999988888777654433
No 23
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=63.30 E-value=92 Score=29.64 Aligned_cols=83 Identities=18% Similarity=0.031 Sum_probs=44.2
Q ss_pred chhhhhhceeeecCCccccChHHHH----HHHHHHHHHHHHhcccCCceeeechhhHHHHHHHH-------hhh-eeeee
Q 024679 181 CMYIFMQKLVIKTRSVEFMPFYLSL----SNFLMSLSFLAYGMFKDDPFIYVPNGIGTLLGIAQ-------VML-YSYYS 248 (264)
Q Consensus 181 ~~~~~~~~~Virtkst~~ip~~~~~----~~~~n~~lW~~YGll~~D~~IiipN~iG~~l~~~q-------l~l-~~~y~ 248 (264)
|-|+||-..=.+.||+++-|..=.+ .+..+-+.-.+=..-.+||--+..|---+.++.+. +.= |..||
T Consensus 277 iKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyVly~ 356 (372)
T KOG3145|consen 277 IKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYVLYP 356 (372)
T ss_pred HHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhheeEec
Confidence 6789999888999999887643221 11222222222222234555555554434444333 222 34456
Q ss_pred CCCCCCCCCCCccCC
Q 024679 249 TKSGEVSRQPLIDSF 263 (264)
Q Consensus 249 ~~~~~~~~~~~~~~~ 263 (264)
+++..+++.|.+|+-
T Consensus 357 ~~~~~~s~y~g~~~~ 371 (372)
T KOG3145|consen 357 RGHVLKSEYPGEDSN 371 (372)
T ss_pred cccccCCCCCCCCCC
Confidence 555555667888763
No 24
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=62.78 E-value=11 Score=28.06 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=34.5
Q ss_pred HccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHH
Q 024679 30 VSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVF 88 (264)
Q Consensus 30 lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l 88 (264)
.--+-|...-.|+|. ..+|..-....++++.+=+.|| +..+| +..+...+.|.+.
T Consensus 11 ~Rf~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 11 SRFIVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChHH
Confidence 334555555555544 2334444457899999999999 78888 4444555555544
No 25
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=60.13 E-value=7.7 Score=28.92 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=36.5
Q ss_pred ecCCccccChHHHHHHHHHHHHHHHHhcccCCceeeechhhHHHH
Q 024679 192 KTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDPFIYVPNGIGTLL 236 (264)
Q Consensus 192 rtkst~~ip~~~~~~~~~n~~lW~~YGll~~D~~IiipN~iG~~l 236 (264)
+++..+.+|..--..+.+++++=++||+.++|...++..+.|.+.
T Consensus 21 Ek~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 21 EKAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHH
Confidence 344445578888899999999999999999999887777777654
No 26
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.18 E-value=2.4 Score=34.13 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=51.6
Q ss_pred cCCccccChHHHHHHHHHHHHHHHHhccc--CCceeeechhhHHHHHHHHhhheeeeeCC
Q 024679 193 TRSVEFMPFYLSLSNFLMSLSFLAYGMFK--DDPFIYVPNGIGTLLGIAQVMLYSYYSTK 250 (264)
Q Consensus 193 tkst~~ip~~~~~~~~~n~~lW~~YGll~--~D~~IiipN~iG~~l~~~ql~l~~~y~~~ 250 (264)
.|..|.+|....++-+..++.|+=|.+.+ +|+.+.-.|..=.+-+..|+.=.+.|...
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999987 78998889999999999999988888543
No 27
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=57.21 E-value=16 Score=32.81 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=56.2
Q ss_pred HHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHHhhhhhhhhh
Q 024679 29 FVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEK 102 (264)
Q Consensus 29 ~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl~vy~~y~~~ 102 (264)
-.+-++|+..-+|+|++|..+.......+..|..=..|. ....+++.++..-.+..+++..-..-.++|.++
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999999 666544667666677777766655555555443
No 28
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=49.46 E-value=33 Score=31.56 Aligned_cols=42 Identities=12% Similarity=-0.085 Sum_probs=34.8
Q ss_pred hhhhhceeeecCCccccChHHHHHHHHHHHHHHHHhcccCCc
Q 024679 183 YIFMQKLVIKTRSVEFMPFYLSLSNFLMSLSFLAYGMFKDDP 224 (264)
Q Consensus 183 ~~~~~~~Virtkst~~ip~~~~~~~~~n~~lW~~YGll~~D~ 224 (264)
++||..+..|+|+.+++|+...+...++.+.=..|..+.+-.
T Consensus 24 ~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~ 65 (260)
T KOG2913|consen 24 LIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG 65 (260)
T ss_pred hhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc
Confidence 456678899999999999999998888888888887776533
No 29
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=44.01 E-value=44 Score=32.70 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHH
Q 024679 20 TGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIY 92 (264)
Q Consensus 20 lg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~y 92 (264)
++.+-++.=|++.=.++.-++++||.+++|....+.-+++.+.=+.|= +=.+..+.|++++++|++++++=
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL--~D~~ts~lil~~~gig~~ie~WK 375 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL--LDNETSWLILVPSGIGLLIEAWK 375 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE--EeCCCcEEeehHhHhHHhHhhee
Confidence 444556677888889999999999999999888888888888777887 33355578999999999988753
No 30
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=39.80 E-value=15 Score=31.28 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHH
Q 024679 54 ICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIY 92 (264)
Q Consensus 54 v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~y 92 (264)
...++++.+|+.|+ ++.++ ++....|+.....+.+.
T Consensus 118 ~~~l~~~~~w~~~n--~~igS-~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGS-WGGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcC-HHHHHHHHHHHHHHHHH
Confidence 46899999999999 78887 45666677666666543
No 31
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=34.55 E-value=70 Score=29.33 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=45.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHhhcCcchhhHHHhhhhccccccchhhhhhceeeecCCccccChHHH---HHHHHHHH
Q 024679 136 RLFVGYLSVASLISMFASPLFIIVSSSGTQAFRLLRLHISLHSYGCMYIFMQKLVIKTRSVEFMPFYLS---LSNFLMSL 212 (264)
Q Consensus 136 ~~~~g~~~~~~~i~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Virtkst~~ip~~~~---~~~~~n~~ 212 (264)
++++|.+.++++-.+|++-+.=+ -.++-|+ +.....|.+++++... -..+.+++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv---------~Yi~~~~--------------~~y~~as~~~ldYvFs~f~GIfltSt~ 236 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPV---------IYIQDHP--------------DIYPGASQNGLDYVFSHFSGIFLTSTV 236 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchH---------HHHHhCc--------------cccCCCCCcchheeHHHHhhHHHHHHH
Confidence 58899999999888876644433 1111121 1223445666665443 34455677
Q ss_pred HHHHHhcccCCceeeech
Q 024679 213 SFLAYGMFKDDPFIYVPN 230 (264)
Q Consensus 213 lW~~YGll~~D~~IiipN 230 (264)
.+.+|.+..+|.+-+-||
T Consensus 237 ~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 237 YFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred HHHHHHHhhcCCCCCCCC
Confidence 788999998887766666
No 32
>COG3952 Predicted membrane protein [Function unknown]
Probab=25.63 E-value=3.1e+02 Score=22.09 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHhHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHH
Q 024679 14 SVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYV 93 (264)
Q Consensus 14 ~~i~gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl 93 (264)
....|..|-..-..-| +-|... .++++...++..-.-+.+++..+-+.|. +-++| ..-+..|+.|++.++.-+
T Consensus 26 W~LiG~~g~~lFt~Rf---~VQw~~-se~a~rsv~P~~FW~~sllGg~l~L~Yf--i~~~D-pV~Vl~~~~glF~~l~nL 98 (113)
T COG3952 26 WKLIGFSGQLLFTGRF---VVQWLA-SEHANRSVIPVLFWYFSLLGGLLLLSYF--IRRQD-PVFVLGQACGLFIYLRNL 98 (113)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHH-HHhcCCCcchHHHHHHHHHhhHHHHHHH--HHhcc-hHHHHHHhhhHHHHHHHH
Confidence 4555665554433222 233322 2333334444444447899999999999 77888 334567888888888776
Q ss_pred hhhhh
Q 024679 94 SIFIS 98 (264)
Q Consensus 94 ~vy~~ 98 (264)
.+..+
T Consensus 99 ~L~~k 103 (113)
T COG3952 99 WLIIK 103 (113)
T ss_pred HHHHH
Confidence 65554
No 33
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=24.78 E-value=1.9e+02 Score=26.10 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=13.2
Q ss_pred ecccchhhhhhHHHHHHHHHHhh
Q 024679 130 FDSNGRRLFVGYLSVASLISMFA 152 (264)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~i~~~~ 152 (264)
.|.+...+++|..|++.+-+|-+
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aA 148 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAA 148 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHH
Confidence 44555566666666665555533
No 34
>PHA03049 IMV membrane protein; Provisional
Probab=24.46 E-value=52 Score=24.18 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=21.8
Q ss_pred hHHHHHHHHhhheeeeeCCCCCCCCCCC
Q 024679 232 IGTLLGIAQVMLYSYYSTKSGEVSRQPL 259 (264)
Q Consensus 232 iG~~l~~~ql~l~~~y~~~~~~~~~~~~ 259 (264)
+++....+-+++|-+|.+++..+.++|+
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~~~p~ 35 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQNPPS 35 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCC
Confidence 4455567788899999998888877775
No 35
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.81 E-value=4.4e+02 Score=27.41 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHhHHHHHHHHHHHHccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCCceEEEeechhhhHHHHHHH
Q 024679 14 SVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYV 93 (264)
Q Consensus 14 ~~i~gilg~i~ti~m~lSplp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d~~~li~~N~iGl~l~~~yl 93 (264)
..++|.+|-+. ...=.+-|...-.|+|. ..++..-....+.++.+=+.|+ +...| +-.+..++.|++..+=.+
T Consensus 140 ~~~~G~~~q~~---f~~Rf~~Qw~~se~~~~-s~~p~~FW~~s~~G~~~~l~Y~--i~r~d-pv~i~g~~~g~~~y~rnl 212 (608)
T PRK01021 140 WHLIGCIGLTI---FSLRFFIQWFYLEYNNQ-SALPALFWKASLLGGSLALLYF--IRTGD-PVNILCYGCGLFPSLANL 212 (608)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHhHHHHHHHH--HHhCC-ceEEEccccchhHHHHHH
Confidence 34555555544 33333555555444443 2344444447899999999999 78888 557788899998888776
Q ss_pred hhhhh
Q 024679 94 SIFIS 98 (264)
Q Consensus 94 ~vy~~ 98 (264)
.+..+
T Consensus 213 ~li~~ 217 (608)
T PRK01021 213 RIAYK 217 (608)
T ss_pred HHHHh
Confidence 44443
No 36
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=21.52 E-value=1.1e+03 Score=25.86 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=20.1
Q ss_pred cHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhhcccccCC
Q 024679 32 PIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPG 74 (264)
Q Consensus 32 plp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG~~~l~~d 74 (264)
-+|+.++-.|-. + .-..+.|++|..|- .+...
T Consensus 73 ~Fpq~r~RfR~~-------L--~YI~~~~l~W~lYf--av~~r 104 (1318)
T KOG3618|consen 73 CFPQTRRRFRYA-------L--FYIGFACLLWSLYF--AVHMR 104 (1318)
T ss_pred hCHHHHHHHHHH-------H--HHHHHHHHHHHHHh--eeccC
Confidence 456666655532 2 23456789999998 66543
No 37
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.48 E-value=4.5e+02 Score=23.44 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=9.5
Q ss_pred echhhHHHHHHHHhh
Q 024679 228 VPNGIGTLLGIAQVM 242 (264)
Q Consensus 228 ipN~iG~~l~~~ql~ 242 (264)
+.|..|..+-..-..
T Consensus 175 l~N~~gl~~~~fg~~ 189 (214)
T cd08764 175 LGNFIGIVLVIFGGL 189 (214)
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999875544433
Done!