Query 024679
Match_columns 264
No_of_seqs 169 out of 1372
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a9h_A Voltage-gated potassium 8.0 3.9E+02 0.013 21.0 4.1 46 1-46 96-143 (155)
2 4h33_A LMO2059 protein; bilaye 6.1 3.1E+02 0.01 21.0 2.5 44 1-44 55-100 (137)
3 3bkd_A Transmembrane domain of 5.7 1E+02 0.0036 17.4 -0.4 14 222-235 2-15 (26)
4 2nr1_A NR1 M2, M2; receptor, s 5.5 1.6E+02 0.0054 17.0 0.3 14 209-222 9-22 (27)
5 3dh4_A Sodium/glucose cotransp 5.3 1.7E+03 0.057 20.6 9.4 26 222-247 446-471 (530)
6 2ih3_C Voltage-gated potassium 5.0 4.1E+02 0.014 19.7 2.6 42 2-43 74-117 (122)
7 2q67_A Potassium channel prote 4.2 6.7E+02 0.023 18.3 3.2 40 2-41 62-103 (114)
8 3tlw_A GLR4197 protein, GLIC; 3.9 1.7E+03 0.059 18.8 7.2 23 136-158 256-278 (321)
9 2ljb_A M2 protein, BM2 protein 3.7 2E+02 0.007 17.4 -0.1 15 221-235 5-19 (35)
10 2ks1_B Epidermal growth factor 3.6 3.2E+02 0.011 17.4 0.7 13 223-235 9-21 (44)
No 1
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=7.96 E-value=3.9e+02 Score=20.98 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=33.7
Q ss_pred CCcccchhhhh--hhHHHHhHHHHHHHHHHHHccHHHHHHHHHhcCCC
Q 024679 1 MSSVGISSIYS--GCSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTE 46 (264)
Q Consensus 1 ~~~~~~~~~~~--~~~~i~gilg~i~ti~m~lSplp~i~~I~k~KSt~ 46 (264)
|+.||-+|+.- +...++..+..+..+.++..++..+.....++..+
T Consensus 96 ltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 96 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred eecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888753 44677788888888888888888888877766544
No 2
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=6.07 E-value=3.1e+02 Score=20.97 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=29.9
Q ss_pred CCcccchhhhh--hhHHHHhHHHHHHHHHHHHccHHHHHHHHHhcC
Q 024679 1 MSSVGISSIYS--GCSVAAGVTGNIFAFVLFVSPIPTFRRILRNKS 44 (264)
Q Consensus 1 ~~~~~~~~~~~--~~~~i~gilg~i~ti~m~lSplp~i~~I~k~KS 44 (264)
|+.||-+|+.- +...++..+..+.++.++..++..+-...+++.
T Consensus 55 ~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 55 ATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888753 456777777777777777777777766555443
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=5.69 E-value=1e+02 Score=17.44 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=10.8
Q ss_pred CCceeeechhhHHH
Q 024679 222 DDPFIYVPNGIGTL 235 (264)
Q Consensus 222 ~D~~IiipN~iG~~ 235 (264)
+|..++.+|.+|++
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 57777788988874
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=5.50 E-value=1.6e+02 Score=17.02 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcccC
Q 024679 209 LMSLSFLAYGMFKD 222 (264)
Q Consensus 209 ~n~~lW~~YGll~~ 222 (264)
+.+.+|+.+|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 45678999988753
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=5.33 E-value=1.7e+03 Score=20.57 Aligned_cols=26 Identities=8% Similarity=-0.162 Sum_probs=15.6
Q ss_pred CCceeeechhhHHHHHHHHhhheeee
Q 024679 222 DDPFIYVPNGIGTLLGIAQVMLYSYY 247 (264)
Q Consensus 222 ~D~~IiipN~iG~~l~~~ql~l~~~y 247 (264)
.|.+..-++.+++.++++-....-..
T Consensus 446 ~~~~~~~~~~~~~~~~~i~~v~vSl~ 471 (530)
T 3dh4_A 446 LSMPFMDQMLYTLLFTMVVIAFTSLS 471 (530)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 45444456777887777665554333
No 6
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=4.95 E-value=4.1e+02 Score=19.69 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=26.6
Q ss_pred Ccccchhhhh--hhHHHHhHHHHHHHHHHHHccHHHHHHHHHhc
Q 024679 2 SSVGISSIYS--GCSVAAGVTGNIFAFVLFVSPIPTFRRILRNK 43 (264)
Q Consensus 2 ~~~~~~~~~~--~~~~i~gilg~i~ti~m~lSplp~i~~I~k~K 43 (264)
+.+|-+|+.- +...++..+..+..+.++..++..+-....++
T Consensus 74 tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 74 TTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678777753 34566666666666766666666665555443
No 7
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=4.20 E-value=6.7e+02 Score=18.29 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=27.3
Q ss_pred Ccccchhhhh--hhHHHHhHHHHHHHHHHHHccHHHHHHHHH
Q 024679 2 SSVGISSIYS--GCSVAAGVTGNIFAFVLFVSPIPTFRRILR 41 (264)
Q Consensus 2 ~~~~~~~~~~--~~~~i~gilg~i~ti~m~lSplp~i~~I~k 41 (264)
+.+|-+|+.. +...++..+-.+..+.++...+..+.+..+
T Consensus 62 tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 62 TTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp TSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888753 445677777777777777777776666553
No 8
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=3.87 E-value=1.7e+03 Score=18.75 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=14.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHH
Q 024679 136 RLFVGYLSVASLISMFASPLFII 158 (264)
Q Consensus 136 ~~~~g~~~~~~~i~~~~~pl~~~ 158 (264)
...+|..-.+..+.++++=+..+
T Consensus 256 vp~i~~~~~~~~~~v~~sll~~v 278 (321)
T 3tlw_A 256 MTYTGAIIFMIYLFYFVAVIEVT 278 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667666666666666655554
No 9
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=3.67 E-value=2e+02 Score=17.43 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=11.1
Q ss_pred cCCceeeechhhHHH
Q 024679 221 KDDPFIYVPNGIGTL 235 (264)
Q Consensus 221 ~~D~~IiipN~iG~~ 235 (264)
.+|..++.+|.+|++
T Consensus 5 SsDplviaA~IigiL 19 (35)
T 2ljb_A 5 SSDPLVVAASIIGIL 19 (35)
T ss_dssp -CCTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 367888888988874
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=3.63 E-value=3.2e+02 Score=17.37 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=5.6
Q ss_pred CceeeechhhHHH
Q 024679 223 DPFIYVPNGIGTL 235 (264)
Q Consensus 223 D~~IiipN~iG~~ 235 (264)
|..-+..-++|-+
T Consensus 9 ~~~~IA~gVVgGv 21 (44)
T 2ks1_B 9 KIPSIATGMVGAL 21 (44)
T ss_dssp CSSSSTHHHHHHH
T ss_pred CcceEEeehhHHH
Confidence 3333444455533
Done!