Query 024679
Match_columns 264
No_of_seqs 169 out of 1372
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 12:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024679.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024679hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 8.2 1.5E+02 0.011 19.7 3.4 40 1-40 52-93 (103)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 7.9 68 0.0049 21.5 1.3 21 238-258 34-54 (91)
3 d1xioa_ f.13.1.1 (A:) Sensory 2.5 1E+03 0.075 17.3 7.5 16 205-220 167-182 (226)
4 d2c3fa1 b.108.1.5 (A:7-336) Ph 2.3 2.5E+02 0.018 22.4 0.9 24 240-263 165-191 (330)
5 d1nvpc_ b.56.1.1 (C:) Large ch 2.2 2.7E+02 0.019 16.6 0.7 14 179-196 6-19 (47)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 2.2 1.4E+02 0.0099 20.0 -0.9 8 245-252 52-59 (100)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 1.9 5E+02 0.036 14.3 1.6 6 82-87 4-9 (36)
8 d1xmea1 f.24.1.1 (A:14-562) Ba 1.8 1.8E+03 0.13 18.4 6.9 33 32-64 149-181 (549)
9 d2croa_ a.35.1.2 (A:) cro 434 1.8 5.6E+02 0.041 14.7 1.9 34 34-67 31-64 (65)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 1.7 2E+02 0.014 19.5 -0.7 36 222-257 35-70 (107)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.20 E-value=1.5e+02 Score=19.73 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCcccchhhh--hhhHHHHhHHHHHHHHHHHHccHHHHHHHH
Q 024679 1 MSSVGISSIY--SGCSVAAGVTGNIFAFVLFVSPIPTFRRIL 40 (264)
Q Consensus 1 ~~~~~~~~~~--~~~~~i~gilg~i~ti~m~lSplp~i~~I~ 40 (264)
|+.||-+|+. .....++..+-.+..+..+..++..+-+..
T Consensus 52 ~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~ 93 (103)
T d1r3jc_ 52 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93 (103)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888874 344566666666666666666665554433
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.93 E-value=68 Score=21.52 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHhhheeeeeCCCCCCCCCC
Q 024679 238 IAQVMLYSYYSTKSGEVSRQP 258 (264)
Q Consensus 238 ~~ql~l~~~y~~~~~~~~~~~ 258 (264)
..-+...++|++++++...+|
T Consensus 34 ~~~~~~~~ryR~~~~~~~~~~ 54 (91)
T d1fftb2 34 LMAVGFAWKYRASNKDAKYSP 54 (91)
T ss_dssp HHHHTTTTTTTTSTTTCSSCC
T ss_pred HHHHhhheeeeccCCccCCCC
Confidence 333444466776665544344
No 3
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.48 E-value=1e+03 Score=17.30 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhcc
Q 024679 205 LSNFLMSLSFLAYGMF 220 (264)
Q Consensus 205 ~~~~~n~~lW~~YGll 220 (264)
....+..++|.+|++.
T Consensus 167 ~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 167 KLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445567799999875
No 4
>d2c3fa1 b.108.1.5 (A:7-336) Phage-associated hyaluronidase, HylP1 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.33 E-value=2.5e+02 Score=22.38 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=18.9
Q ss_pred HhhheeeeeCCCCCC---CCCCCccCC
Q 024679 240 QVMLYSYYSTKSGEV---SRQPLIDSF 263 (264)
Q Consensus 240 ql~l~~~y~~~~~~~---~~~~~~~~~ 263 (264)
|-.+|.=|+.+.+.+ .|||...||
T Consensus 165 qsa~fvdy~gktnavni~mrqpstpnf 191 (330)
T d2c3fa1 165 QSALFVDYKGTTNAVNIAMRQPTTPNF 191 (330)
T ss_dssp SCSCCCCCCSSSCSSCCCCCCCSSCCS
T ss_pred cceEEEeecCccceeEEEEeCCCCCCc
Confidence 566778888887755 899999887
No 5
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.24 E-value=2.7e+02 Score=16.55 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=10.1
Q ss_pred ccchhhhhhceeeecCCc
Q 024679 179 YGCMYIFMQKLVIKTRSV 196 (264)
Q Consensus 179 ~~~~~~~~~~~Virtkst 196 (264)
..|.| -+|.|+|+.
T Consensus 6 vlc~y----dKV~R~KnK 19 (47)
T d1nvpc_ 6 VVCQY----DKIHRSKNK 19 (47)
T ss_dssp EEEEE----EEEEEETTE
T ss_pred EEEEE----EEEEeecce
Confidence 45655 889998874
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.18 E-value=1.4e+02 Score=20.05 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=3.7
Q ss_pred eeeeCCCC
Q 024679 245 SYYSTKSG 252 (264)
Q Consensus 245 ~~y~~~~~ 252 (264)
++|+++++
T Consensus 52 ~~~r~~~~ 59 (100)
T d3dtub2 52 WRFHEKRN 59 (100)
T ss_dssp HHHBTTTC
T ss_pred hhhhccCC
Confidence 44554443
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.95 E-value=5e+02 Score=14.32 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=2.3
Q ss_pred chhhhH
Q 024679 82 NSVGAV 87 (264)
Q Consensus 82 N~iGl~ 87 (264)
|..|.+
T Consensus 4 N~Lg~i 9 (36)
T d2axtm1 4 NQLGLI 9 (36)
T ss_dssp CTTHHH
T ss_pred hHHHHH
Confidence 333433
No 8
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=1.80 E-value=1.8e+03 Score=18.41 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=22.7
Q ss_pred cHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 024679 32 PIPTFRRILRNKSTEQFSGLPYICSLLNCLITL 64 (264)
Q Consensus 32 plp~i~~I~k~KSt~~is~lp~v~~~~n~~lWl 64 (264)
-+-++.+.+|++..++..++.....+....+|.
T Consensus 149 ~~~t~~~~r~~~~~~~~~Pl~~~~~~~~~~l~~ 181 (549)
T d1xmea1 149 IVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWF 181 (549)
T ss_dssp HHHHHHHHHHHSSTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcccchHHHHHHHHHHHHHH
Confidence 356666777888777777777666666666663
No 9
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=1.77 E-value=5.6e+02 Score=14.70 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHhh
Q 024679 34 PTFRRILRNKSTEQFSGLPYICSLLNCLITLWYG 67 (264)
Q Consensus 34 p~i~~I~k~KSt~~is~lp~v~~~~n~~lWl~YG 67 (264)
.++.++.+.++...-...-..-.+-...-|+.+|
T Consensus 31 ~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 31 QSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred hHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=1.68 E-value=2e+02 Score=19.47 Aligned_cols=36 Identities=8% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCceeeechhhHHHHHHHHhhheeeeeCCCCCCCCC
Q 024679 222 DDPFIYVPNGIGTLLGIAQVMLYSYYSTKSGEVSRQ 257 (264)
Q Consensus 222 ~D~~IiipN~iG~~l~~~ql~l~~~y~~~~~~~~~~ 257 (264)
+|....+.=.++.+....-....++|++++++..+|
T Consensus 35 h~~v~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~ 70 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPAR 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccc
Done!