BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024680
MLSSCSHSLSHRPIVLPSISKLRVSSRPSSSSLSRTSRIFDSTLKLTRNKWKISCFRHEE
ISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAE
TILQVMLLWVAAFWFIGSWVIPFAAHVAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDV
ALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVW
EEIVFRGFLLPSLTKYMPVWCAYW

High Scoring Gene Products

Symbol, full name Information P value
AT5G60750 protein from Arabidopsis thaliana 1.2e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024680
        (264 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2175836 - symbol:AT5G60750 "AT5G60750" species...   536  1.2e-51   1


>TAIR|locus:2175836 [details] [associations]
            symbol:AT5G60750 "AT5G60750" species:3702 "Arabidopsis
            thaliana" [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
            [GO:0006569 "tryptophan catabolic process" evidence=RCA]
            [GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA]
            InterPro:IPR003675 Pfam:PF02517 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0016020 GO:GO:0006508 GO:GO:0008233
            eggNOG:COG1266 KO:K07052 EMBL:AY065231 EMBL:AY096531 EMBL:AY086571
            IPI:IPI00516676 RefSeq:NP_568928.1 UniGene:At.7243 MEROPS:M79.A01
            EnsemblPlants:AT5G60750.1 GeneID:836196 KEGG:ath:AT5G60750
            TAIR:At5g60750 HOGENOM:HOG000241876 InParanoid:Q8VZ58 OMA:EQSIMAR
            PhylomeDB:Q8VZ58 ProtClustDB:CLSN2690057 ArrayExpress:Q8VZ58
            Genevestigator:Q8VZ58 Uniprot:Q8VZ58
        Length = 347

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 108/157 (68%), Positives = 122/157 (77%)

Query:   109 IGSRWTVPWTAET--ILQVMLLWVAAFWFIGSWVIPFAAHVAGIAILHRCLSRFHPLPSD 166
             IGS W +P+ A      +  L +     F  S +      +AGIAILHRCLS F PL SD
Sbjct:   136 IGS-WMIPFMAHISGFHKESLTFRGQALF--SLITDVTEGLAGIAILHRCLSMFRPLASD 192

Query:   167 WFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMP-SAPVTISSVEQSIMARDPVA 225
             WFRF+LKGNWQLDV +GC MFP VNRLSQ NLNLLPL P S+PV++SSVEQSIMARDPVA
Sbjct:   193 WFRFTLKGNWQLDVIIGCFMFPFVNRLSQLNLNLLPLPPTSSPVSLSSVEQSIMARDPVA 252

Query:   226 MALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 262
             MALYA+VVS+CAPVWEEIVFRGFLLPSLT+YMPVWCA
Sbjct:   253 MALYAVVVSICAPVWEEIVFRGFLLPSLTRYMPVWCA 289

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 75/153 (49%), Positives = 92/153 (60%)

Query:     1 MLSSCSHS--LSHRPIVLPXXXXXXX--XXXXXXXXXXXXXXXXXXTLKLTRNKWKISCF 56
             + SSCS S  L HRP +                               K  ++KWKI CF
Sbjct:     2 LTSSCSSSSLLCHRPALSSSRSKFRVPCRTVFSPALTKISPLTASSPSKSAKHKWKILCF 61

Query:    57 RHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVP 116
             R+E+ +PEN  PE   HFV +ELVKP+ D     K DW  T ++AAD VL+AIG+RW VP
Sbjct:    62 RNEDSAPEN--PE---HFVPEELVKPDQDSPCTDKTDWKATFQKAADAVLKAIGTRWKVP 116

Query:   117 WTAETILQVMLLWVAAFWFIGSWVIPFAAHVAG 149
             WT ETI+QVMLLWVAAFWFIGSW+IPF AH++G
Sbjct:   117 WTVETIVQVMLLWVAAFWFIGSWMIPFMAHISG 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.459    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       239   0.00092  113 3  11 22  0.49    32
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  222 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.22u 0.09s 21.31t   Elapsed:  00:00:00
  Total cpu time:  21.22u 0.09s 21.31t   Elapsed:  00:00:00
  Start:  Fri May 10 19:11:34 2013   End:  Fri May 10 19:11:34 2013

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