BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024680
         (264 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2TN52|GLYA_CLOBB Serine hydroxymethyltransferase OS=Clostridium botulinum (strain
           Eklund 17B / Type B) GN=glyA PE=3 SV=1
          Length = 411

 Score = 36.2 bits (82), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 136 IGSWVIPFAAHVAGIAILHRCLSRFHPLPSDWFRFSLKGNWQ-LDVALGCLMFPLVNRLS 194
           IG++++   AH+AG+       +  HP P  +  F      + L    G L+        
Sbjct: 192 IGAYLMVDMAHIAGL-----VAAELHPSPVPYADFVTSTTHKTLRGPRGGLILCKEKYAK 246

Query: 195 QFNLNLLPLMPSAPVTISSVEQSI---MARDPVAMALYAIVVSVCAPVWEEIVFRGFLLP 251
             + N+ P M   P+      +++    A DP      A VV  C  + E++V RGF L 
Sbjct: 247 DLDKNIFPGMQGGPLMHIIAAKAVCFKEALDPSFKEYMARVVENCKELGEQLVKRGFKLV 306

Query: 252 S 252
           S
Sbjct: 307 S 307


>sp|Q03188|CENPC_HUMAN Centromere protein C 1 OS=Homo sapiens GN=CENPC1 PE=1 SV=2
          Length = 943

 Score = 33.5 bits (75), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 27  RPSSSSLSRTSRIFDSTLKLTRNKWKISC---FRHEEISPENSKPESIEHFVQDELVKPE 83
           R S   + R ++   STL L   K K       RH   +P +S P      ++DE +  E
Sbjct: 248 RDSEYEIQRQAKKSFSTLFLETVKRKSESSPIVRHAATAPPHSCPPDDTKLIEDEFIIDE 307

Query: 84  IDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQ 124
            DQS    R W T  R+A      ++  R   P  +  +LQ
Sbjct: 308 SDQSFA-SRSWITIPRKAG-----SLKQRTISPAESTALLQ 342


>sp|Q01H84|SELN_XENTR Selenoprotein N OS=Xenopus tropicalis GN=sepn1 PE=2 SV=2
          Length = 562

 Score = 32.0 bits (71), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 152 ILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRL-SQFNLNLLPLMP 205
           I+H+ LS FHP P    RF+ +G+     A+    + +V R+ ++F LN  P  P
Sbjct: 225 IIHKLLSMFHPRPFIKTRFAPQGSVACIRAISDFYYDIVFRIHAEFQLNEPPNFP 279


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.135    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,516,089
Number of Sequences: 539616
Number of extensions: 3679882
Number of successful extensions: 11409
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11408
Number of HSP's gapped (non-prelim): 6
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)