Query 024680
Match_columns 264
No_of_seqs 162 out of 201
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03008 pepcterm_CAAX CAAX p 97.9 0.0001 2.2E-09 66.8 9.8 31 225-255 115-145 (222)
2 COG1266 Predicted metal-depend 97.8 1.7E-05 3.6E-10 67.1 3.3 40 224-263 120-159 (226)
3 PF02517 Abi: CAAX protease se 97.6 4.2E-05 9.1E-10 57.6 2.8 35 227-261 4-38 (91)
4 KOG4130 Prenyl protein proteas 78.0 0.97 2.1E-05 42.7 0.9 26 231-256 132-157 (291)
5 PF10953 DUF2754: Protein of u 42.9 8.9 0.00019 29.1 0.2 23 118-140 37-59 (70)
6 KOG2178 Predicted sugar kinase 38.1 46 0.001 33.4 4.3 20 5-24 322-341 (409)
7 PF13367 PrsW-protease: Protea 30.1 1.2E+02 0.0026 25.9 5.2 18 227-244 40-57 (191)
8 PF08372 PRT_C: Plant phosphor 25.2 2.3E+02 0.005 24.8 6.1 30 73-102 39-68 (156)
9 COG2339 prsW Membrane proteina 24.0 2.2E+02 0.0048 27.2 6.2 29 227-255 104-136 (274)
10 PF11014 DUF2852: Protein of u 23.0 1.3E+02 0.0029 25.2 4.0 26 114-140 4-29 (115)
11 PF11190 DUF2976: Protein of u 22.5 4.1E+02 0.0088 21.2 7.0 17 90-106 11-27 (87)
12 PF15048 OSTbeta: Organic solu 20.7 2.3E+02 0.0049 24.3 5.0 41 91-134 12-52 (125)
No 1
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=97.86 E-value=0.0001 Score=66.84 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhchhhhhc
Q 024680 225 AMALYAIVVSVCAPVWEEIVFRGFLLPSLTK 255 (264)
Q Consensus 225 a~~l~~l~~~vlAPI~EEiiFRGFLL~sLtr 255 (264)
..+..++.+++++|+.||++|||++++.+.+
T Consensus 115 l~~~~l~~~~l~vpi~EElfFRG~l~~~l~~ 145 (222)
T TIGR03008 115 LIAFRLAGATLVVPVMEELFWRSFLLRYLQQ 145 (222)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444557889999999999999999999975
No 2
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=97.79 E-value=1.7e-05 Score=67.05 Aligned_cols=40 Identities=33% Similarity=0.569 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchhhhhccCcccccc
Q 024680 224 VAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAY 263 (264)
Q Consensus 224 ~a~~l~~l~~~vlAPI~EEiiFRGFLL~sLtr~~p~w~AI 263 (264)
......+++.++.+|+.||++|||++++.+.++.+.|.|+
T Consensus 120 ~~~~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~ 159 (226)
T COG1266 120 LWLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAI 159 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHH
Confidence 3567778889999999999999999999999999987764
No 3
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=97.61 E-value=4.2e-05 Score=57.61 Aligned_cols=35 Identities=34% Similarity=0.742 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhchhhhhccCcccc
Q 024680 227 ALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWC 261 (264)
Q Consensus 227 ~l~~l~~~vlAPI~EEiiFRGFLL~sLtr~~p~w~ 261 (264)
+..++..++++|+.||++|||++++.+.+..+.+.
T Consensus 4 ~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~ 38 (91)
T PF02517_consen 4 LIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWF 38 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 55667889999999999999999999999864343
No 4
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=77.96 E-value=0.97 Score=42.68 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=21.9
Q ss_pred HHHHHHhhHHHHHHHhhhchhhhhcc
Q 024680 231 IVVSVCAPVWEEIVFRGFLLPSLTKY 256 (264)
Q Consensus 231 l~~~vlAPI~EEiiFRGFLL~sLtr~ 256 (264)
+=--|.||+-||++||..++|-...-
T Consensus 132 ~RN~iiaPLtEElvfracmlp~~l~~ 157 (291)
T KOG4130|consen 132 FRNFIIAPLTEELVFRACMLPTYLNL 157 (291)
T ss_pred HHhhhhccchHHHHHHHHHHHHHHHh
Confidence 35678999999999999999987654
No 5
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=42.95 E-value=8.9 Score=29.14 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhh
Q 024680 118 TAETILQVMLLWVAAFWFIGSWV 140 (264)
Q Consensus 118 ~~~tI~~vmvlw~~~F~~vG~~~ 140 (264)
+++|-...++-|+.+||+.|.++
T Consensus 37 gwqtyavglvtwvisfwlag~ii 59 (70)
T PF10953_consen 37 GWQTYAVGLVTWVISFWLAGFII 59 (70)
T ss_pred CceeeeehhHHHHHHHHHhhhee
Confidence 35566777888999999999863
No 6
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=38.09 E-value=46 Score=33.43 Aligned_cols=20 Identities=70% Similarity=1.188 Sum_probs=18.3
Q ss_pred CCCCCcCCCCcCCCCcccee
Q 024680 5 CSHSLSHRPIVLPSISKLRV 24 (264)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (264)
|-|||||||++.|...++||
T Consensus 322 CPhSLSFRPIIlPds~~L~I 341 (409)
T KOG2178|consen 322 CPHSLSFRPIILPDSSELRV 341 (409)
T ss_pred CCCcccccceEccCccEEEE
Confidence 67899999999999888888
No 7
>PF13367 PrsW-protease: Protease prsW family
Probab=30.12 E-value=1.2e+02 Score=25.95 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 024680 227 ALYAIVVSVCAPVWEEIV 244 (264)
Q Consensus 227 ~l~~l~~~vlAPI~EEii 244 (264)
........+.||+.||.+
T Consensus 40 ~~~~~~~~~~a~~~EE~~ 57 (191)
T PF13367_consen 40 FSSLWGAFLIAPLVEEFA 57 (191)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 334557889999999975
No 8
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=25.25 E-value=2.3e+02 Score=24.80 Aligned_cols=30 Identities=17% Similarity=0.054 Sum_probs=15.2
Q ss_pred ccccccccCCCCCCCCccccchHHHHHHhh
Q 024680 73 HFVQDELVKPEIDQSNPIKRDWATTLREAA 102 (264)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 102 (264)
|+++||..+.+..++.+.-+.-.+++++..
T Consensus 39 deldEEfD~~ps~~~~~~lr~Rydrlr~va 68 (156)
T PF08372_consen 39 DELDEEFDTFPSSRPPDSLRMRYDRLRSVA 68 (156)
T ss_pred chhhhhhcccccccccHHHHHHHHHHHHHH
Confidence 466666554444444444445555555544
No 9
>COG2339 prsW Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.00 E-value=2.2e+02 Score=27.15 Aligned_cols=29 Identities=31% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHHHHH----Hhhhchhhhhc
Q 024680 227 ALYAIVVSVCAPVWEEIV----FRGFLLPSLTK 255 (264)
Q Consensus 227 ~l~~l~~~vlAPI~EEii----FRGFLL~sLtr 255 (264)
...++...+.++++||+. -+.+.+++...
T Consensus 104 ~~~~l~~al~~G~vEE~~KaL~v~~~~~~~~~~ 136 (274)
T COG2339 104 ALLFLGSALLAGLVEEPLKALAVVLFVLRSLPL 136 (274)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHccccc
Confidence 455667889999999963 44444444443
No 10
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.99 E-value=1.3e+02 Score=25.23 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=16.7
Q ss_pred cccCChhHHHHHHHHHHHHHHHhhhhh
Q 024680 114 TVPWTAETILQVMLLWVAAFWFIGSWV 140 (264)
Q Consensus 114 ~VPW~~~tI~~vmvlw~~~F~~vG~~~ 140 (264)
|-+|.+-+|.. ||+-++-||-+|.++
T Consensus 4 ~~~~~~a~Ia~-mVlGFi~fWPlGla~ 29 (115)
T PF11014_consen 4 DPRWKPAWIAA-MVLGFIVFWPLGLAL 29 (115)
T ss_pred CCCCchHHHHH-HHHHHHHHHHHHHHH
Confidence 34788877765 555555677777654
No 11
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=22.46 E-value=4.1e+02 Score=21.24 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=13.5
Q ss_pred cccchHHHHHHhhhhhh
Q 024680 90 IKRDWATTLREAADGVL 106 (264)
Q Consensus 90 ~~~~w~~~~~~~~~~~~ 106 (264)
..+||.++++-+....+
T Consensus 11 ~~~~~~~~i~~y~~d~~ 27 (87)
T PF11190_consen 11 GGGGIMETIKGYAKDGV 27 (87)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 67899999988876653
No 12
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.71 E-value=2.3e+02 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=24.4
Q ss_pred ccchHHHHHHhhhhhhhhcCCcccccCChhHHHHHHHHHHHHHH
Q 024680 91 KRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFW 134 (264)
Q Consensus 91 ~~~w~~~~~~~~~~~~~~~~~~W~VPW~~~tI~~vmvlw~~~F~ 134 (264)
...+....++..-++|++-+. +||+--..+...+.-+++|+
T Consensus 12 ~~~v~qE~LEemlW~fR~ED~---tpWNysiL~Ls~vvlvi~~~ 52 (125)
T PF15048_consen 12 GTTVPQELLEEMLWFFRVEDA---TPWNYSILALSFVVLVISFF 52 (125)
T ss_pred cCccCHHHHHHHHHheecCCC---CCcchHHHHHHHHHHHHHHH
Confidence 344555557777888888887 69996443333332333443
Done!