Query 024680
Match_columns 264
No_of_seqs 162 out of 201
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mty_B Methane monooxygenase h 7.8 3.7E+02 0.013 25.2 4.4 36 213-250 225-261 (384)
2 3u52_C Phenol hydroxylase comp 7.7 3.4E+02 0.012 24.9 4.0 39 212-252 200-238 (333)
3 4b1v_M Phosphatase and actin r 6.7 1.6E+02 0.0055 18.6 0.9 10 241-250 19-28 (32)
4 3u85_B Histone-lysine N-methyl 6.5 1.6E+02 0.0056 17.0 0.8 11 20-30 1-11 (21)
5 3ge3_B Toluene-4-monooxygenase 6.5 4.1E+02 0.014 24.2 3.9 34 213-248 202-235 (327)
6 2inc_B Toluene, O-xylene monoo 6.3 4E+02 0.014 24.2 3.7 34 213-248 198-231 (322)
7 1rh5_B Preprotein translocase 6.2 8.1E+02 0.028 17.8 5.0 29 118-148 30-58 (74)
8 3tow_A Multivesicular BODY sub 5.3 2.5E+02 0.0086 23.3 1.6 28 46-73 40-67 (152)
9 3vx8_D Ubiquitin-like modifier 5.2 2E+02 0.0069 26.2 1.0 14 47-60 260-273 (323)
10 1mhy_B Methane monooxygenase h 5.0 6.1E+02 0.021 23.8 4.3 37 212-250 232-269 (395)
No 1
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=7.84 E-value=3.7e+02 Score=25.22 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=26.4
Q ss_pred hHHHH-HhccChHHHHHHHHHHHHHhhHHHHHHHhhhch
Q 024680 213 SVEQS-IMARDPVAMALYAIVVSVCAPVWEEIVFRGFLL 250 (264)
Q Consensus 213 sLe~~-l~s~~~~a~~l~~l~~~vlAPI~EEiiFRGFLL 250 (264)
.+|.+ +...|+...+ +.+-.++-|++.+++|++|++
T Consensus 225 ~vE~~~l~~~Dw~E~~--va~nlv~epl~~~L~~~~~~~ 261 (384)
T 1mty_B 225 AVEGLWQEVFDWNESA--FSVHAVYDALFGQFVRREFFQ 261 (384)
T ss_dssp HHHHHHHTCCCHHHHH--HHHHHTHHHHHHHHHHHTTHH
T ss_pred HHHHHHhhccCHHHHH--HHHHHHHHHhhHHHHHHHHHH
Confidence 35666 6667766554 446788899999999999544
No 2
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C
Probab=7.69 E-value=3.4e+02 Score=24.85 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=30.2
Q ss_pred hhHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHhhhchhh
Q 024680 212 SSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPS 252 (264)
Q Consensus 212 ssLe~~l~s~~~~a~~l~~l~~~vlAPI~EEiiFRGFLL~s 252 (264)
+.+|.++...|+...+ +....++-|++.+++|++|....
T Consensus 200 ~~~Ed~~~~~Dw~E~~--vA~nlv~E~ll~~L~~~~~~~~a 238 (333)
T 3u52_C 200 KLVEDTLVVDDWFELT--LVQNILIDGMMYPLVYDKMDQWF 238 (333)
T ss_dssp HHHHHHTTCCCHHHHH--HHHHTHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhcCCHHHHH--HHHHHHHHHhhHHHHHHHHHHHH
Confidence 4577888788887765 33578899999999999976544
No 3
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=6.66 E-value=1.6e+02 Score=18.62 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=8.2
Q ss_pred HHHHHhhhch
Q 024680 241 EEIVFRGFLL 250 (264)
Q Consensus 241 EEiiFRGFLL 250 (264)
||+|=||.|.
T Consensus 19 eelikrgvlk 28 (32)
T 4b1v_M 19 EELIKRGVLK 28 (32)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHhhhhh
Confidence 8888898874
No 4
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=6.52 E-value=1.6e+02 Score=16.97 Aligned_cols=11 Identities=36% Similarity=0.749 Sum_probs=8.3
Q ss_pred ccceeccCCCC
Q 024680 20 SKLRVSSRPSS 30 (264)
Q Consensus 20 ~~~~~~~~~~~ 30 (264)
|+-|.|.||+.
T Consensus 1 srwrfparpg~ 11 (21)
T 3u85_B 1 SRWRFPARPGT 11 (26)
T ss_pred CccccccCCCc
Confidence 45688889985
No 5
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B
Probab=6.48 E-value=4.1e+02 Score=24.21 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.5
Q ss_pred hHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHhhh
Q 024680 213 SVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGF 248 (264)
Q Consensus 213 sLe~~l~s~~~~a~~l~~l~~~vlAPI~EEiiFRGF 248 (264)
.+|.++...|+...++ ....++-|++.+++|++|
T Consensus 202 ~~Ed~~~~~Dw~E~~v--A~nlv~E~l~~~L~~~~~ 235 (327)
T 3ge3_B 202 LMEKQLTAFDWGEAFV--SLNLVVKPMIVESIFKPL 235 (327)
T ss_dssp HHHHHTTCCSHHHHHH--HHHHTHHHHHHHHTHHHH
T ss_pred HHHHHHhcCCHHHHHH--HHHHHHHHhhHHHHHHHH
Confidence 4667777788777653 356789999999999997
No 6
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B*
Probab=6.32 E-value=4e+02 Score=24.15 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=26.7
Q ss_pred hHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHhhh
Q 024680 213 SVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGF 248 (264)
Q Consensus 213 sLe~~l~s~~~~a~~l~~l~~~vlAPI~EEiiFRGF 248 (264)
.+|.++...|+...+ +....++=|++.+++|++|
T Consensus 198 ~~E~~~~~~Dw~E~~--va~nlv~e~l~~~l~~~~~ 231 (322)
T 2inc_B 198 LIEKALIAWDWGEAF--TAINLVTKPAVEEALLQQL 231 (322)
T ss_dssp HHHHHTTCCSHHHHH--HHHHTTHHHHHHHHHTHHH
T ss_pred HHHHhhccCCHHHHH--HHHHHHHHHhhhHHHHHHH
Confidence 467777788887755 3357788999999999995
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=6.15 E-value=8.1e+02 Score=17.83 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 024680 118 TAETILQVMLLWVAAFWFIGSWVIPFAAHVA 148 (264)
Q Consensus 118 ~~~tI~~vmvlw~~~F~~vG~~~~P~v~~~l 148 (264)
+.++..++.-+-.++|+++|.+. ++.++.
T Consensus 30 dr~EF~~iak~~~iG~~imG~IG--fiIkli 58 (74)
T 1rh5_B 30 TKDEYLAVAKVTALGISLLGIIG--YIIHVP 58 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 67777777777788999999853 444443
No 8
>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}
Probab=5.27 E-value=2.5e+02 Score=23.28 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=19.9
Q ss_pred ccccceeeeeeecCCCCCCCCCCccccc
Q 024680 46 LTRNKWKISCFRHEEISPENSKPESIEH 73 (264)
Q Consensus 46 ~~~~~~~~~cf~~~~~~~~~~~~~~~e~ 73 (264)
+.++..+..||+.+..+.++.....+.|
T Consensus 40 F~~k~~rYLC~sr~~~~~~~~~~~VvtD 67 (152)
T 3tow_A 40 FKSKVTRYLCFTRSFSKENSHLGNVLVD 67 (152)
T ss_dssp TSCCCCCEEEEECCCCSTTGGGCEEEEE
T ss_pred cccCCeEEEEEecCCcccccCCCCeEEE
Confidence 4566789999999876666654455655
No 9
>3vx8_D Ubiquitin-like modifier-activating enzyme ATG7; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=5.20 E-value=2e+02 Score=26.20 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=11.4
Q ss_pred cccceeeeeeecCC
Q 024680 47 TRNKWKISCFRHEE 60 (264)
Q Consensus 47 ~~~~~~~~cf~~~~ 60 (264)
..++.++.|+|..+
T Consensus 260 ~~~~v~vlc~Rd~~ 273 (323)
T 3vx8_D 260 NLETVWFFCYRESR 273 (323)
T ss_dssp CCSEEEEEEECEET
T ss_pred CCceEEEEEEecCC
Confidence 46789999999764
No 10
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B
Probab=5.04 E-value=6.1e+02 Score=23.82 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=28.1
Q ss_pred hhHHHH-HhccChHHHHHHHHHHHHHhhHHHHHHHhhhch
Q 024680 212 SSVEQS-IMARDPVAMALYAIVVSVCAPVWEEIVFRGFLL 250 (264)
Q Consensus 212 ssLe~~-l~s~~~~a~~l~~l~~~vlAPI~EEiiFRGFLL 250 (264)
+.+|.+ +...|+...+ +....++-|++.+++|++|.+
T Consensus 232 ~~~E~~~l~~~Dw~E~~--vA~nlv~E~l~~~L~~~~~~~ 269 (395)
T 1mhy_B 232 ATVQEIWQGVQDWNEIL--WAGHAVYDATFGQFARREFFQ 269 (395)
T ss_dssp HHHHHHHHSCCCHHHHH--HHHHHTHHHHHHHHHHTTTHH
T ss_pred HHHHhhhhhcCCHHHHH--HHHHHHHHHhhHHHHHHHHHH
Confidence 346777 6778887766 335778899999999999633
Done!