Query 024680
Match_columns 264
No_of_seqs 162 out of 201
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 12:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dj7a2 g.39.1.3 (A:8-43) Acti 8.8 21 0.0015 21.8 -1.0 9 48-56 28-36 (36)
2 d1mhyb_ a.25.1.2 (B:) Methane 8.6 1.5E+02 0.011 25.8 4.3 39 212-252 222-261 (383)
3 d2incb1 a.25.1.2 (B:8-329) Tol 7.2 1.6E+02 0.011 24.8 3.7 34 213-248 198-231 (322)
4 d1mtyb_ a.25.1.2 (B:) Methane 5.8 1.4E+02 0.01 25.9 2.7 40 213-254 225-265 (384)
5 d1eova2 d.104.1.1 (A:205-557) 5.4 87 0.0064 25.9 0.9 21 54-74 118-140 (353)
6 d1rh5b_ f.23.28.1 (B:) Preprot 5.3 2.9E+02 0.021 17.8 3.4 23 118-140 19-41 (56)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 3.8 3.9E+02 0.028 15.0 2.9 19 229-247 7-25 (30)
8 d1e4ra_ g.9.1.1 (A:) Beta-defe 3.4 95 0.0069 18.2 -0.4 9 53-61 4-12 (35)
9 d1x68a1 g.39.1.3 (A:8-36) Four 3.4 92 0.0067 18.0 -0.4 11 46-56 19-29 (29)
10 d1xdpa4 d.136.1.4 (A:502-688) 3.3 2.9E+02 0.021 21.6 2.6 36 11-62 68-103 (187)
No 1
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.76 E-value=21 Score=21.84 Aligned_cols=9 Identities=44% Similarity=1.501 Sum_probs=7.6
Q ss_pred ccceeeeee
Q 024680 48 RNKWKISCF 56 (264)
Q Consensus 48 ~~~~~~~cf 56 (264)
.++|++.||
T Consensus 28 dkqWH~~CF 36 (36)
T d2dj7a2 28 DKQWHVSCF 36 (36)
T ss_dssp TEEECTTTC
T ss_pred ecceeeeeC
Confidence 568999998
No 2
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=8.62 E-value=1.5e+02 Score=25.80 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=29.2
Q ss_pred hhHHHHHhc-cChHHHHHHHHHHHHHhhHHHHHHHhhhchhh
Q 024680 212 SSVEQSIMA-RDPVAMALYAIVVSVCAPVWEEIVFRGFLLPS 252 (264)
Q Consensus 212 ssLe~~l~s-~~~~a~~l~~l~~~vlAPI~EEiiFRGFLL~s 252 (264)
..+|.++.+ .|+...++ ....++=|++.|++|++|....
T Consensus 222 ~~vE~~lva~~Dw~E~~v--A~NlV~e~ll~~L~~~~f~~~~ 261 (383)
T d1mhyb_ 222 ATVQEIWQGVQDWNEILW--AGHAVYDATFGQFARREFFQRL 261 (383)
T ss_dssp HHHHHHHHSCCCHHHHHH--HHHHTHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHhcCccHHHHHH--HHHHHHHHhhHHHHHHHHHHHH
Confidence 346777774 78766543 3578899999999999987653
No 3
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]}
Probab=7.24 E-value=1.6e+02 Score=24.79 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=26.5
Q ss_pred hHHHHHhccChHHHHHHHHHHHHHhhHHHHHHHhhh
Q 024680 213 SVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGF 248 (264)
Q Consensus 213 sLe~~l~s~~~~a~~l~~l~~~vlAPI~EEiiFRGF 248 (264)
.+|..+...|+...++ ....++=|++.|++|++|
T Consensus 198 ~vE~~l~~~Dw~E~~v--A~nlv~e~l~~~l~~~~l 231 (322)
T d2incb1 198 LIEKALIAWDWGEAFT--AINLVTKPAVEEALLQQL 231 (322)
T ss_dssp HHHHHTTCCSHHHHHH--HHHTTHHHHHHHHHTHHH
T ss_pred HHHHHhhcccHHHHHH--HHHHHHHHhhhHHHHHHH
Confidence 4677777888877654 356788899999999995
No 4
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=5.82 E-value=1.4e+02 Score=25.90 Aligned_cols=40 Identities=20% Similarity=0.077 Sum_probs=28.3
Q ss_pred hHHHHHh-ccChHHHHHHHHHHHHHhhHHHHHHHhhhchhhhh
Q 024680 213 SVEQSIM-ARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLT 254 (264)
Q Consensus 213 sLe~~l~-s~~~~a~~l~~l~~~vlAPI~EEiiFRGFLL~sLt 254 (264)
.+|.++. ..|+... ++.+-.++=|++.|+++|+|++..-.
T Consensus 225 ~vE~~l~~~~Dw~E~--~vA~Nlv~dpll~~L~~~~f~~~~Aa 265 (384)
T d1mtyb_ 225 AVEGLWQEVFDWNES--AFSVHAVYDALFGQFVRREFFQRLAP 265 (384)
T ss_dssp HHHHHHHTCCCHHHH--HHHHHHTHHHHHHHHHHHTTHHHHGG
T ss_pred HHHHHHHhcccHHHH--HHHHHhhHHhhhHHHHHHHHHHHHHH
Confidence 3566664 3676544 44467888999999999999865433
No 5
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.44 E-value=87 Score=25.93 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=14.1
Q ss_pred eeeecCCCCCC--CCCCcccccc
Q 024680 54 SCFRHEEISPE--NSKPESIEHF 74 (264)
Q Consensus 54 ~cf~~~~~~~~--~~~~~~~e~~ 74 (264)
-|||||+..+. +|+|-.+|=+
T Consensus 118 ~~FR~E~~~~~rH~pEFtmLE~y 140 (353)
T d1eova2 118 PVFRAENSNTHRHMTEFTGLDME 140 (353)
T ss_dssp EEECCCCCCCTTCCSEEEEEEEE
T ss_pred hhhhccccccccccchhcccccc
Confidence 49999987663 4666555543
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.28 E-value=2.9e+02 Score=17.76 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhh
Q 024680 118 TAETILQVMLLWVAAFWFIGSWV 140 (264)
Q Consensus 118 ~~~tI~~vmvlw~~~F~~vG~~~ 140 (264)
++++..++..+..++|+++|.+.
T Consensus 19 ~~~Ef~~ia~v~~iG~~i~G~IG 41 (56)
T d1rh5b_ 19 TKDEYLAVAKVTALGISLLGIIG 41 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777788999888763
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.83 E-value=3.9e+02 Score=14.96 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=13.6
Q ss_pred HHHHHHHHhhHHHHHHHhh
Q 024680 229 YAIVVSVCAPVWEEIVFRG 247 (264)
Q Consensus 229 ~~l~~~vlAPI~EEiiFRG 247 (264)
.++.+|++|=.|=-|.||-
T Consensus 7 v~ifac~i~lfffaiffre 25 (30)
T d2axtt1 7 VFIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3445788888888888873
No 8
>d1e4ra_ g.9.1.1 (A:) Beta-defensin, BD {Mouse (Mus musculus), MBD6 [TaxId: 10090]}
Probab=3.40 E-value=95 Score=18.24 Aligned_cols=9 Identities=44% Similarity=0.966 Sum_probs=6.5
Q ss_pred eeeeecCCC
Q 024680 53 ISCFRHEEI 61 (264)
Q Consensus 53 ~~cf~~~~~ 61 (264)
+||.||++.
T Consensus 4 vscirnggi 12 (35)
T d1e4ra_ 4 VSCIRNGGI 12 (35)
T ss_dssp CCGGGGTCE
T ss_pred ceeEecCCE
Confidence 678888764
No 9
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.39 E-value=92 Score=17.95 Aligned_cols=11 Identities=27% Similarity=1.084 Sum_probs=8.5
Q ss_pred ccccceeeeee
Q 024680 46 LTRNKWKISCF 56 (264)
Q Consensus 46 ~~~~~~~~~cf 56 (264)
+..++|+..||
T Consensus 19 FedR~WH~~CF 29 (29)
T d1x68a1 19 FQDSQWHSECF 29 (29)
T ss_dssp ETTEEEEGGGC
T ss_pred eehhhcccccC
Confidence 45678998887
No 10
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=3.34 E-value=2.9e+02 Score=21.56 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCCCcCCCCccceeccCCCCCCcccccccccccccccccceeeeeeecCCCC
Q 024680 11 HRPIVLPSISKLRVSSRPSSSSLSRTSRIFDSTLKLTRNKWKISCFRHEEIS 62 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cf~~~~~~ 62 (264)
-+|-++.-...+|| -+--.|++|-+ |+.||.|+++.
T Consensus 68 L~pgi~g~SenI~V--------~SivgRfLEHs--------Ri~~F~n~g~~ 103 (187)
T d1xdpa4 68 LIPNLEGISDNIRA--------ISIVDRYLEHD--------RVYIFENGGDK 103 (187)
T ss_dssp BCTTCTTTSTTEEE--------EEECSSSEECC--------CEEEECGGGSC
T ss_pred eccccCCCcCcEEE--------EEeccchhccC--------cEEEEecCCCc
Confidence 45656555666777 23334677755 79999988654
Done!