BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024681
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/263 (79%), Positives = 235/263 (89%), Gaps = 1/263 (0%)
Query: 3 DLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAGSVNPDYF 61
++LEAL+VRVVGTGDRIL LAHGFGTDQSAW ILPY ++RV+++DLVCAGSVNPDYF
Sbjct: 5 NILEALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYF 64
Query: 62 DFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASP 121
DF RYTTLD YVDDLLNI+D+LG+ CAYVGHSVSAMIG++ASIRRP+LF+KLILIG SP
Sbjct: 65 DFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSP 124
Query: 122 RFLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNMRP 181
RFLNDEDYHGGFEE EI+KVF AMEANYEAW +G+APLAVGADVPAAVREFSRTLFNMRP
Sbjct: 125 RFLNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRP 184
Query: 182 DISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELLKI 241
DISLFVS+TVF++DLRG+LGLVRVP +IQT+KDVSVP SVAEYL+ HLGG TVE LK
Sbjct: 185 DISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKT 244
Query: 242 EGHLPHLSAPAIVGPVIRRALSR 264
EGHLP LSAPA + +RRAL R
Sbjct: 245 EGHLPQLSAPAQLAQFLRRALPR 267
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 426 bits (1096), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/261 (77%), Positives = 237/261 (90%), Gaps = 1/261 (0%)
Query: 4 LLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPY-LNHHRVIMFDLVCAGSVNPDYFD 62
LL+AL+VRVVG+G+R+LVLAHGFGTDQSAW RILP+ L +RV+++DLVCAGSVNPD+FD
Sbjct: 7 LLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFD 66
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPR 122
FRRYTTLD YVDDLL+ILD LG++ CAYVGHSVSAMIG+LASIRRP+LF+KLILIGASPR
Sbjct: 67 FRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPR 126
Query: 123 FLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNMRPD 182
FLNDEDYHGGFE+ EI+KVF AMEANYEAW G+APLAVGADVPAAVREFSRTLFNMRPD
Sbjct: 127 FLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPD 186
Query: 183 ISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELLKIE 242
I+LFVS+TVF++D+RG+LGLV+VPC I QT++D SVP SVA YL+ HLGG+NTV L IE
Sbjct: 187 ITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIE 246
Query: 243 GHLPHLSAPAIVGPVIRRALS 263
GHLPHLSAP ++ +RRALS
Sbjct: 247 GHLPHLSAPTLLAQELRRALS 267
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/261 (77%), Positives = 237/261 (90%), Gaps = 1/261 (0%)
Query: 4 LLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPY-LNHHRVIMFDLVCAGSVNPDYFD 62
LL+AL+VRVVG+G+R+LVLAHGFGTDQSAW RILP+ L +RV+++DLVCAGSVNPD+FD
Sbjct: 7 LLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFD 66
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPR 122
FRRYTTLD YVDDLL+ILD LG++ CAYVGH+VSAMIG+LASIRRP+LF+KLILIGASPR
Sbjct: 67 FRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPR 126
Query: 123 FLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNMRPD 182
FLNDEDYHGGFE+ EI+KVF AMEANYEAW G+APLAVGADVPAAVREFSRTLFNMRPD
Sbjct: 127 FLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNMRPD 186
Query: 183 ISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELLKIE 242
I+LFVS+TVF++D+RG+LGLV+VPC I QT++D SVP SVA YL+ HLGG+NTV L IE
Sbjct: 187 ITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIE 246
Query: 243 GHLPHLSAPAIVGPVIRRALS 263
GHLPHLSAP ++ +RRALS
Sbjct: 247 GHLPHLSAPTLLAQELRRALS 267
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/262 (75%), Positives = 230/262 (87%), Gaps = 1/262 (0%)
Query: 4 LLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
LL+ L+VRVVG+G+R++VL+HGFGTDQSAW R+LPYL HRV+++DLVCAGSVNPD+FD
Sbjct: 6 LLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 65
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPR 122
FRRY LDAYVDDLL ILD L + RCA+VGHSVSAMIG+LASIRRPDLF KL+LIGASPR
Sbjct: 66 FRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPR 125
Query: 123 FLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNMRPD 182
FLND DYHGGFE EI +VF AM ANY AWA GYAPLAVGADVPAAV+EFSRTLFNMRPD
Sbjct: 126 FLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPD 185
Query: 183 ISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELLKIE 242
ISL V +TVF TDLRG+LG+VR PCV++QT++DVSVP SVA YL+ HLGGR TVE L+ E
Sbjct: 186 ISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTE 245
Query: 243 GHLPHLSAPAIVGPVIRRALSR 264
GHLPHLSAP+++ V+RRAL+R
Sbjct: 246 GHLPHLSAPSLLAQVLRRALAR 267
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/262 (75%), Positives = 230/262 (87%), Gaps = 1/262 (0%)
Query: 4 LLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
LL+ L+VRVVG+G+R++VL+HGFGTDQSAW R+LPYL HRV+++DLVCAGSVNPD+FD
Sbjct: 4 LLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFD 63
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPR 122
FRRY LDAYVDDLL ILD L + RCA+VGHSVSAMIG+LASIRRPDLF KL+LIGASPR
Sbjct: 64 FRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPR 123
Query: 123 FLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNMRPD 182
FLND DYHGGFE EI +VF AM ANY AWA GYAPLAVGADVPAAV+EFSRTLFNMRPD
Sbjct: 124 FLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPD 183
Query: 183 ISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELLKIE 242
ISL V +TVF TDLRG+LG+VR PCV++QT++DVSVP SVA YL+ HLGGR TVE L+ E
Sbjct: 184 ISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTE 243
Query: 243 GHLPHLSAPAIVGPVIRRALSR 264
GHLPHLSAP+++ V+RRAL+R
Sbjct: 244 GHLPHLSAPSLLAQVLRRALAR 265
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 204/262 (77%), Gaps = 2/262 (0%)
Query: 1 MGDLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAGSVNPD 59
MG + EA +V+V+G+G+ +VL HGFGTDQS W+ ++P+L + +RV+++D + AG+ NPD
Sbjct: 19 MGVVEEAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 78
Query: 60 YFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGA 119
YFDF RY+ L+ Y DL+ IL+ L + C +VGHSVSAMIG+LAS+ RPDLF+K+++I A
Sbjct: 79 YFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 138
Query: 120 SPRFLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPA-AVREFSRTLFN 178
SPR++ND DY GGFE+ +++++F A+ +NY+AW G+APLAVG D+ + AV+EFSRTLFN
Sbjct: 139 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFN 198
Query: 179 MRPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVEL 238
MRPDI+L V +T+F +D+R IL V VPC I+Q+ KD++VPV V+EYL +LG + VE+
Sbjct: 199 MRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEV 258
Query: 239 LKIEGHLPHLSAPAIVGPVIRR 260
+ +GHLP LS+P V PVI R
Sbjct: 259 IPSDGHLPQLSSPDSVIPVILR 280
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 308 bits (789), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 204/262 (77%), Gaps = 2/262 (0%)
Query: 1 MGDLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAGSVNPD 59
MG + EA +V+V+G+G+ +VL HGFGTDQS W+ ++P+L + +RV+++D + AG+ NPD
Sbjct: 1 MGVVEEAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 60
Query: 60 YFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGA 119
YFDF RY+ L+ Y DL+ IL+ L + C +VGHSVSAMIG+LAS+ RPDLF+K+++I A
Sbjct: 61 YFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 120
Query: 120 SPRFLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPA-AVREFSRTLFN 178
SPR++ND DY GGFE+ +++++F A+ +NY+AW G+APLAVG D+ + AV+EFSRTLFN
Sbjct: 121 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFN 180
Query: 179 MRPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVEL 238
MRPDI+L V +T+F +D+R IL V VPC I+Q+ KD++VPV V+EYL +LG + VE+
Sbjct: 181 MRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEV 240
Query: 239 LKIEGHLPHLSAPAIVGPVIRR 260
+ +GHLP LS+P V PVI R
Sbjct: 241 IPSDGHLPQLSSPDSVIPVILR 262
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 204/262 (77%), Gaps = 2/262 (0%)
Query: 1 MGDLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAGSVNPD 59
MG + EA +V+V+G+G+ +VL HGFGTDQS W+ ++P+L + +RV+++D + AG+ NPD
Sbjct: 3 MGVVEEAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 62
Query: 60 YFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGA 119
YFDF RY+ L+ Y DL+ IL+ L + C +VGHSVSAMIG+LAS+ RPDLF+K+++I A
Sbjct: 63 YFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 122
Query: 120 SPRFLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPA-AVREFSRTLFN 178
SPR++ND DY GGFE+ +++++F A+ +NY+AW G+APLAVG D+ + AV+EFSRTLFN
Sbjct: 123 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFN 182
Query: 179 MRPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVEL 238
MRPDI+L V +T+F +D+R IL V VPC I+Q+ KD++VPV V+EYL +LG + VE+
Sbjct: 183 MRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEV 242
Query: 239 LKIEGHLPHLSAPAIVGPVIRR 260
+ +GHLP LS+P V PVI R
Sbjct: 243 IPSDGHLPQLSSPDSVIPVILR 264
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 149/254 (58%), Gaps = 4/254 (1%)
Query: 1 MGDLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILP-YLNHHRVIMFDLVCAGSVNPD 59
M +L HV+V G+G ++ A GFG DQS W + P + HRVI+FD V +G +
Sbjct: 4 MTSILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLR 63
Query: 60 YFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGA 119
+D RY TLD Y D+L++ + L + +VGHSV A+IG+LASIRRP+LF+ L+++G
Sbjct: 64 AYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGP 123
Query: 120 SPRFLND-EDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGA-DVPAAVREFSRTLF 177
SP +LND +Y+GGFEE ++ + ME NY WA +A + D P E
Sbjct: 124 SPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFC 183
Query: 178 NMRPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVE 237
+ P I+ +K F +D R L V VP +I+Q + D+ P +V +Y+ +HL ++++
Sbjct: 184 STDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHL-PYSSLK 242
Query: 238 LLKIEGHLPHLSAP 251
++ GH PH+S P
Sbjct: 243 QMEARGHCPHMSHP 256
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 143 bits (361), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 140/259 (54%), Gaps = 4/259 (1%)
Query: 3 DLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNHH-RVIMFDLVCAGSVNPDYF 61
D+++ ++ + G G++ ++LAHGFG DQ+ W+ LP L VI+FD V +G + + F
Sbjct: 14 DVVKRNNINITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSDLESF 73
Query: 62 DFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASP 121
+RY++L+ Y D+ IL L + + +GHSVS++I +AS D + + I SP
Sbjct: 74 STKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPSP 133
Query: 122 RFLN-DEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAA-VREFSRTLFNM 179
F N DY GGFE +++++ + NY WA APL GA + + E S +
Sbjct: 134 CFXNFPPDYVGGFERDDLEELINLXDKNYIGWANYLAPLVXGASHSSELIGELSGSFCTT 193
Query: 180 RPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELL 239
P ++ +K F +D R +L + P +I Q++KD V +Y ++ + +EL+
Sbjct: 194 DPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYXAENI-PNSQLELI 252
Query: 240 KIEGHLPHLSAPAIVGPVI 258
+ EGH H + ++ P++
Sbjct: 253 QAEGHCLHXTDAGLITPLL 271
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 19/251 (7%)
Query: 7 ALHVRVVGTGDR-ILVLAHGFGTDQSAWQRILPYLNHH-RVIMFDLVCAG--SVNPDYFD 62
+L R+ G ++ +L L++ GT W LP L H RV+ +D G SV P +
Sbjct: 16 SLAYRLDGAAEKPLLALSNSIGTTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYT 75
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPR 122
R +D+L +LD L V R ++G S+ ++G ++ P +L+L S
Sbjct: 76 LARLG------EDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAW 129
Query: 123 FLNDEDYHGGFEEAEIDKVFRAMEANYEAWAY--GYAPLAVGADVPAAVREFSRTLFNMR 180
+ + I V +A + + A + + P A+ V F L
Sbjct: 130 LGPAAQW-----DERIAAVLQAEDXSETAAGFLGNWFPPALLERAEPVVERFRAXLXATN 184
Query: 181 PDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELLK 240
V DTDLR L + P ++I + D S E + + G V L
Sbjct: 185 RHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPA 244
Query: 241 IEGHLPHLSAP 251
+ HL ++ P
Sbjct: 245 V--HLSNVEFP 253
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 20/239 (8%)
Query: 8 LHVRVVGT---GDRILVLAHGFGTDQSAWQRILPYLNHH-RVIMFDLVCAGSVNPDYFDF 63
LH R+ G +VL++ GTD S W + L+ H RV+ +D G +
Sbjct: 14 LHYRIDGERHGNAPWIVLSNSLGTDLSXWAPQVAALSKHFRVLRYDTRGHGHSEAPKGPY 73
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
T++ D+L + DTL + R + G S + G+ + R D ++ L + R
Sbjct: 74 ----TIEQLTGDVLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAARI 129
Query: 124 LNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADV----PAAVREFSRTLFNM 179
G E + + +A A A P AD P + +
Sbjct: 130 --------GSPEVWVPRAVKARTEGXHALADAVLPRWFTADYXEREPVVLAXIRDVFVHT 181
Query: 180 RPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVEL 238
+ + + DLR ++VP ++I + D++ + L + + G VEL
Sbjct: 182 DKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQAIAGARYVEL 240
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 13 VGTGDRILVLAHGFGTDQSA---WQRILPYLNH-HRVIMFDLVCAGSVN-PDYFDFRRYT 67
VG G + +L HG G SA W+ +P L+ +RVI D+V G + P+ +++ +
Sbjct: 22 VGEGQPV-ILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSK-- 78
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGA 119
D++VD ++ I+D L + + VG+S + + ++R + +++L+GA
Sbjct: 79 --DSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGA 128
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 32/234 (13%)
Query: 8 LHVRVVGTGDRILVLAHG-FGTDQSAWQRILPYLNHH--RVIMFDLVCAGSVNPDYFDF- 63
LH + G GD ++L G G+ ++ + L LN V+ +D G P DF
Sbjct: 14 LHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFP 73
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
+ DA D ++++ L + + +G S + L+A+ + P K+++ GA+ +
Sbjct: 74 ADFFERDA--KDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANA-Y 130
Query: 124 LNDED---YHGGFEEAEI-DKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNM 179
+ DED Y G + ++ ++ + +EA Y Y Y F+RT
Sbjct: 131 VTDEDSMIYEGIRDVSKWSERTRKPLEALY---GYDY---------------FARTCEKW 172
Query: 180 RPDISLFVSKTVFDTDL-RGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGG 232
I F K + D ++ R +L V+ P +I+ KD VP A+++ +H+ G
Sbjct: 173 VDGIRQF--KHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG 224
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 13 VGTGDRILVLAHGFGTDQSA---WQRILPYLNH-HRVIMFDLVCAGSVN-PDYFDFRRYT 67
VG G + +L HG G SA W+ +P L+ +RVI D+V G + P+ +++ +
Sbjct: 22 VGEGQPV-ILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSK-- 78
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGAS 120
D++VD ++ I+D L + + VG++ + + ++R + +++L+GA+
Sbjct: 79 --DSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAA 129
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 32/234 (13%)
Query: 8 LHVRVVGTGDRILVLAHG-FGTDQSAWQRILPYLNHH--RVIMFDLVCAGSVNPDYFDF- 63
LH + G GD ++L G G+ ++ + L LN V+ +D G P DF
Sbjct: 14 LHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFP 73
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
+ DA D ++++ L + + +G S + L+A+ + P K+++ GA+ +
Sbjct: 74 ADFFERDA--KDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANA-Y 130
Query: 124 LNDED---YHGGFEEAEI-DKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNM 179
+ DED Y G + ++ ++ + +EA Y Y Y F+RT
Sbjct: 131 VTDEDSMIYEGIRDVSKWSERTRKPLEALY---GYDY---------------FARTCEKW 172
Query: 180 RPDISLFVSKTVFDTDL-RGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGG 232
I F K + D ++ R +L V+ P +I+ KD VP A+++ +H+ G
Sbjct: 173 VDGIRQF--KHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG 224
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRIL-PYLNHHRVIMFDLVCAG-SVNPDYFDFRR 65
+H G G +L+L HG+ W +++ P H+ VI+ DL G S PD D +
Sbjct: 21 IHYVREGAGPTLLLL-HGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSK 79
Query: 66 YTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLN 125
Y+ LD DD +LD LG+ + VGH +A++ L IR+ ++ ++ A
Sbjct: 80 YS-LDKAADDQAALLDALGIEKAYVVGHDFAAIV-LHKFIRK---YSDRVIKAAI----- 129
Query: 126 DEDYHGGFEEAEID--KVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFN 178
F+ + D V+ + +E+W + L + +V + RE + F
Sbjct: 130 -------FDPIQPDFGPVYFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFK 177
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 32/234 (13%)
Query: 8 LHVRVVGTGDRILVLAHG-FGTDQSAWQRILPYLNHH--RVIMFDLVCAGSVNPDYFDF- 63
LH + G GD ++L G G+ ++ + L LN V+ +D G P DF
Sbjct: 14 LHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFP 73
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
+ DA D ++++ L + + +G + + L+A+ + P K+++ GA+ +
Sbjct: 74 ADFFERDA--KDAVDLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANA-Y 130
Query: 124 LNDED---YHGGFEEAEI-DKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNM 179
+ DED Y G + ++ ++ + +EA Y Y Y F+RT
Sbjct: 131 VTDEDSMIYEGIRDVSKWSERTRKPLEALY---GYDY---------------FARTCEKW 172
Query: 180 RPDISLFVSKTVFDTDL-RGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGG 232
I F K + D ++ R +L V+ P +I+ KD VP A+++ +H+ G
Sbjct: 173 VDGIRQF--KHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG 224
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 12 VVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAGSVN-----PDYFDFRR 65
VVG L+L HGF + W R+ P L N + V+ DL G + PD+ ++
Sbjct: 20 VVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANY-- 77
Query: 66 YTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLN 125
+ A D ++ TLG R VGH+ G ++ PD L ++ P ++
Sbjct: 78 --SFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVM 135
Query: 126 DED 128
E+
Sbjct: 136 FEE 138
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 12 VVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAGSVN-----PDYFDFRR 65
VVG L+L HGF + W R+ P L N + V+ DL G + PD+ ++
Sbjct: 20 VVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANY-- 77
Query: 66 YTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLN 125
+ A D ++ TLG R VGH G ++ PD L ++ P ++
Sbjct: 78 --SFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDIIPTYVM 135
Query: 126 DED 128
E+
Sbjct: 136 FEE 138
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG---SVNPDYFDF 63
L V V G+G +L+L HG+ AW RI P L + V++ DL G +++ + D+
Sbjct: 23 LRVAVKGSGPPLLLL-HGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADY 81
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
+ A D L + LG R A +GH A +G ++ P + + P
Sbjct: 82 SK----AALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTVVPIL 137
Query: 124 LNDEDYHGGFEEAEIDKVF 142
N A ++KVF
Sbjct: 138 DN---------WAAVNKVF 147
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAG--SVNPDYFDF 63
LH +G+G + L HGF +W+ +P L +RV+ D+ G S P+ ++
Sbjct: 31 LHFVELGSGPAV-CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY 89
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPD 109
++ +++ LD LG+++ ++GH M+ ++ P+
Sbjct: 90 ----CMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 131
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAG--SVNPDYFDF 63
LH +G+G + L HGF +W+ +P L +RV+ D+ G S P+ ++
Sbjct: 46 LHFVELGSGPAV-CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY 104
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPD 109
++ +++ LD LG+++ ++GH M+ ++ P+
Sbjct: 105 ----CMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 146
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAG--SVNPDYFDF 63
LH +G+G + L HGF +W+ +P L +RV+ D+ G S P+ ++
Sbjct: 250 LHFVELGSGPAV-CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY 308
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPD 109
++ +++ LD LG+++ ++GH M+ ++ P+
Sbjct: 309 ----CMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 350
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 10 VRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDYFDFRRYT 67
RV G G +L+L HGF W R+ P L +VI+ DL G S P+ +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
T A L+ ++ LG A GH+ A + ++ P +KL ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 20 LVLAHGFGTDQSA---WQRILPYL-NHHRVIMFDLVCAG-SVNPDYFDFRRYTTLDAYVD 74
+VL HG G A W+ I+P L + V+ DL+ G S P+ + + + V+
Sbjct: 32 VVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRVE 91
Query: 75 DLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGA 119
+L +++ G+ + VG+S+ + L + P+ F K+ L+G+
Sbjct: 92 QILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGS 136
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 10 VRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDYFDFRRYT 67
RV G G +L+L HGF W R+ P L +VI+ DL G S P+ +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
T A L+ ++ LG A GH A + ++ P +KL ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 10 VRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDYFDFRRYT 67
RV G G +L+L HGF W R+ P L +VI+ DL G S P+ +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
T A L+ ++ LG A GH A + ++ P +KL ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 10 VRVVGTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDYFDFRRYT 67
RV G G +L+L HGF W R+ P L +VI+ DL G S P+ +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRF 123
T A L+ ++ LG A GH A + ++ P +KL ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAW----QRILPYLNH-HRVIMFDLVCAGSVNPDY-F 61
+H G GD +VL HG G + W + I P + +RVI+ D C G D
Sbjct: 27 IHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLD--CPGWGKSDSVV 84
Query: 62 DFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGA 119
+ + L+A + L +++D L + + +G+S+ + +++ P+ KL+L+G
Sbjct: 85 NSGSRSDLNARI--LKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGG 140
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 33/253 (13%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYLNHHRVI-MFDLVCAGSVNPDYFDFRRYTTLDAY 72
G G+ LVL HG+G + W+ I L+ H + + DL P + R + L
Sbjct: 10 GQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDL-------PGFGRSRGFGALS-- 60
Query: 73 VDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLNDEDYHG- 131
+ D+ + ++ ++G ++ ++ ++ P+ L+ + +SP F +++ G
Sbjct: 61 LADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGI 120
Query: 132 ------GFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNM-RPDI- 183
GF++ D R +E G A R +T+ + P++
Sbjct: 121 KPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDA------RALKKTVLALPMPEVD 174
Query: 184 ----SLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELL 239
L + KTV DLR L V +P + + D VP V L + L + +
Sbjct: 175 VLNGGLEILKTV---DLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDK-LWPHSESYIF 230
Query: 240 KIEGHLPHLSAPA 252
H P +S PA
Sbjct: 231 AKAAHAPFISHPA 243
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 15 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 73
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 74 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 118
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 25/248 (10%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYL--NHHRVIMFDLVCAG-SVNPDY-FDFRRYTTL 69
GTG + VL HGF +W+R L +RVI +D G S P +D+
Sbjct: 21 GTGQPV-VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY------ 73
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSV-SAMIGLLASIRRPDLFTKLILIGASPRFL--ND 126
D + DL +L+TL + VG S+ + + S K+ + + FL D
Sbjct: 74 DTFAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTD 133
Query: 127 EDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVR---EFSRTLFNMRPDI 183
++ G + D + A++A+ A+ G+ D R E R +N
Sbjct: 134 DNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASG 193
Query: 184 SLFVSK---TVFDTDLRGILGLVRVPCVIIQTSKDVSVPV-SVAEYLQRHLGGRNTVELL 239
F + T + TD R + + VP +I+ + D ++P+ + A + L + E +
Sbjct: 194 GFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKAL---PSAEYV 250
Query: 240 KIEGHLPH 247
++EG PH
Sbjct: 251 EVEG-APH 257
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 15 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 73
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD LG+ V H + +G + R P+
Sbjct: 74 --------LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 118
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 25/248 (10%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYL--NHHRVIMFDLVCAG-SVNPDY-FDFRRYTTL 69
GTG + VL HGF +W+R L +RVI +D G S P +D+
Sbjct: 21 GTGQPV-VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY------ 73
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSV-SAMIGLLASIRRPDLFTKLILIGASPRFL--ND 126
D + DL +L+TL + VG S + + S K+ + + FL D
Sbjct: 74 DTFAADLNTVLETLDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTD 133
Query: 127 EDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVR---EFSRTLFNMRPDI 183
++ G + D + A++A+ A+ G+ D R E R +N
Sbjct: 134 DNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASG 193
Query: 184 SLFVSK---TVFDTDLRGILGLVRVPCVIIQTSKDVSVPV-SVAEYLQRHLGGRNTVELL 239
F + T + TD R + + VP +I+ + D ++P+ + A + L + E +
Sbjct: 194 GFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKAL---PSAEYV 250
Query: 240 KIEGHLPH 247
++EG PH
Sbjct: 251 EVEG-APH 257
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 8 LHVRVVGTG-DRILVLAHGFGTDQSAW----QRILPYLNHHRVIMFDLVCAGSVNP--DY 60
LH G G D+ +VL HG G ++W + I H V+ D G + ++
Sbjct: 46 LHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH 105
Query: 61 FDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
F RY + L + D LG+ R VG+S+ + ++ P +L+L+G
Sbjct: 106 GQFNRYAAMA-----LKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMG 158
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 38 PYLNHHRVIMFDLVCAGSVNPDYFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSA 97
P+ +H+ V + +L G+ + D Y+ + + DL I + L +N+ + GHS
Sbjct: 45 PFTDHYSVYLVNLKGCGNSDSAKND-SEYSXTET-IKDLEAIREALYINKWGFAGHSAGG 102
Query: 98 MIGLLASIRRPDLFTKLILIGAS 120
+ L+ + + TK+I+ GA+
Sbjct: 103 XLALVYATEAQESLTKIIVGGAA 125
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 36/249 (14%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAGSVNPDYFDFRR 65
++ + G+G +L +HG+ D W+ + YL+ +R I FD G + +
Sbjct: 11 IYFKDWGSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW----T 65
Query: 66 YTTLDAYVDDLLNILDTLGVNRCAYVGHS-----VSAMIGLLASIRRPDLFTKLILIGA- 119
D + DD+ +++ L + VG S V+ I S R L+L+GA
Sbjct: 66 GNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSAR----VAGLVLLGAV 121
Query: 120 SPRFLNDEDYHGGFE-------EAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREF 172
+P F DY G + E+ K +++ A YG + G V V+
Sbjct: 122 TPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYG---INKGQVVSQGVQTQ 178
Query: 173 SRTLFNMRPDISLFVSKTVF-DTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLG 231
+ + + + T F +TD R + + VP ++I D VP
Sbjct: 179 TLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETT-------- 230
Query: 232 GRNTVELLK 240
G+ EL+K
Sbjct: 231 GKVAAELIK 239
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 100/256 (39%), Gaps = 33/256 (12%)
Query: 11 RVVGTGDRILVLAHGFGTDQSAWQRILPYLNHHRVI-MFDLVCAGSVNPDYFDFRRYTTL 69
+ G G+ LVL HG+G + W+ I L+ H + + DL P + R + L
Sbjct: 7 QTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDL-------PGFGRSRGFGAL 59
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLNDEDY 129
+ D + ++ ++G S+ ++ ++ P+ L+ + +SP F +++
Sbjct: 60 S--LADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEW 117
Query: 130 HG-------GFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNM-RP 181
G GF++ D R +E G A R +T+ + P
Sbjct: 118 PGIKPDVLAGFQQQLSDDQQRTVERFLALQTXGTETARQDA------RALKKTVLALPXP 171
Query: 182 DI-----SLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTV 236
++ L + KTV DLR L V P + + D VP V L + L +
Sbjct: 172 EVDVLNGGLEILKTV---DLRQPLQNVSXPFLRLYGYLDGLVPRKVVPXLDK-LWPHSES 227
Query: 237 ELLKIEGHLPHLSAPA 252
+ H P +S PA
Sbjct: 228 YIFAKAAHAPFISHPA 243
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAG--SVNPDYFDF 63
LH +G+G L L HGF +W+ +P L RV+ D+ G S P+ ++
Sbjct: 248 LHFVEMGSGP-ALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEY 306
Query: 64 RRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMI 99
++ +++ LD LG+ + ++GH + ++
Sbjct: 307 ----AMELLCKEMVTFLDKLGIPQAVFIGHDWAGVM 338
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG-SVNPDY 60
L E +H VG D VL HG T W+ I+P++ HR I DL+ G S PD
Sbjct: 18 LGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD- 76
Query: 61 FDFRRYTTLDAYVDDLLNILD----TLGVNRCAYVGHSVSAMIGLLASIRRPD 109
LD + DD + LD +G+ V H + +G + R P+
Sbjct: 77 --------LDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 8 LHVRVVGT--GDRILVLAHGFGTDQSAWQRILP-YLNHHRVIMFDLVCAGSVNPDYFDFR 64
L+V VG G + VL G G + + L YL RV+ FD +G D R
Sbjct: 15 LYVEDVGPVEGPALFVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGSGRSLELPQDPR 74
Query: 65 RYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLIL 116
+T +DA V+D L + + LGV R + H A++ L R P ++L
Sbjct: 75 LFT-VDALVEDTLLLAEALGVERFGLLAHGFGAVVALEVLRRFPQAEGAILL 125
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 36/249 (14%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAGSVNPDYFDFRR 65
++ + G+G +L +HG+ D W+ + YL+ +R I FD G + +
Sbjct: 11 IYFKDWGSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW----T 65
Query: 66 YTTLDAYVDDLLNILDTLGVNRCAYVGHS-----VSAMIGLLASIRRPDLFTKLILIGA- 119
D + DD+ +++ L + VG S V+ I S R L+L+GA
Sbjct: 66 GNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSAR----VAGLVLLGAV 121
Query: 120 SPRFLNDEDYHGGFE-------EAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREF 172
+P F DY G + E+ K +++ A YG + G V V+
Sbjct: 122 TPIFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYG---INKGQVVSQGVQTQ 178
Query: 173 SRTLFNMRPDISLFVSKTVF-DTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLG 231
+ + + + T F +TD R + + VP ++I D VP
Sbjct: 179 TLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETT-------- 230
Query: 232 GRNTVELLK 240
G+ EL+K
Sbjct: 231 GKVAAELIK 239
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYL--NHHRVIMFDLVCAG-SVNPDYFDFRRYTTLD 70
G+G +L L HG T W+ I+PY+ +R + DL+ G S PD ++R +
Sbjct: 27 GSGQPVLFL-HGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPD-IEYRLQDHV- 83
Query: 71 AYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPD 109
AY D +D LG++ V H ++IG + PD
Sbjct: 84 AYXD---GFIDALGLDDXVLVIHDWGSVIGXRHARLNPD 119
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 24/242 (9%)
Query: 20 LVLAHGFGTDQSAWQRILPYL--NHHRVIMFDLVCAG-SVNPDY-FDFRRYTTLDAYVDD 75
+VL HGF +W+R L +RVI +D G S P +D+ D + D
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY------DTFAAD 79
Query: 76 LLNILDTLGVNRCAYVGHSV-SAMIGLLASIRRPDLFTKLILIGASPRFL--NDEDYHGG 132
L +L+TL + VG S+ + + S K+ + + FL D++ G
Sbjct: 80 LNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGA 139
Query: 133 FEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVR---EFSRTLFNMRPDISLFVSK 189
+ D + A++A+ A+ G+ D R E R +N F +
Sbjct: 140 APKEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAA 199
Query: 190 ---TVFDTDLRGILGLVRVPCVIIQTSKDVSVPV-SVAEYLQRHLGGRNTVELLKIEGHL 245
T + TD R + + VP +I+ + D ++P+ + A + L + E +++EG
Sbjct: 200 AAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKAL---PSAEYVEVEG-A 255
Query: 246 PH 247
PH
Sbjct: 256 PH 257
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 20 LVLAHG-FGTDQSAWQRILPYLNHHRVIMFDLVCAGSVNPDYFDFRRYTTLD--AYVDDL 76
+VL HG FG+ + +N H +I D+ G ++P R ++ A DL
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHG-LSP------REPVMNYPAMAQDL 71
Query: 77 LNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLNDEDYHGGFEEA 136
++ LD L +++ ++GHS+ + + PD KL+ I +P DYH
Sbjct: 72 VDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP-----VDYHVRRH-- 124
Query: 137 EIDKVFRAMEANYEA 151
D++F A+ A E+
Sbjct: 125 --DEIFAAINAVSES 137
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 8 LHVRVVGTG-DRILVLAHGFGTDQSAW----QRILPYLNHHRVIMFDLVCAGSVNP--DY 60
LH G G D+ +VL HG G ++W + I H V+ D G + ++
Sbjct: 26 LHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH 85
Query: 61 FDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
F RY + L + D LG+ R VG+++ + ++ P +L+L+G
Sbjct: 86 GQFNRYAAMA-----LKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG 138
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 19 ILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAGSVNPDYFDFRRYTTLDAYVDDL 76
++VL HGF +W+ +P L +RV+ D G + + ++ + V D+
Sbjct: 35 LVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK--YRVQKAYRIKELVGDV 92
Query: 77 LNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILI 117
+ +LD+ G + VGH A + + PD ++ I
Sbjct: 93 VGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGI 133
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 19 ILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAGSVNPDYFDFRRYTTLDAYVDDL 76
++VL HGF +W+ +P L +RV+ D G + + ++ + V D+
Sbjct: 29 LVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK--YRVQKAYRIKELVGDV 86
Query: 77 LNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILI 117
+ +LD+ G + VGH A + + PD ++ I
Sbjct: 87 VGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGI 127
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 18 RILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLV--CAGSVNPDYFDFRRYTTLDAYV 73
R ++L HG W+R + L +RVI D V C S P ++ + +
Sbjct: 47 RTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSS-KPAHYQY----SFQQLA 101
Query: 74 DDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILI 117
+ +L+ LGV R + +GHS + ++ P +L+L+
Sbjct: 102 ANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLV 145
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 25/248 (10%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYL--NHHRVIMFDLVCAG-SVNPDY-FDFRRYTTL 69
GTG + VL HGF +W+R L +RVI +D G S P +D+
Sbjct: 22 GTGVPV-VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY------ 74
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSVSA--MIGLLASIRRPDLFTKLILIGASPRFLNDE 127
D + DL +L+TL + VG S+ + ++S + L P L +
Sbjct: 75 DTFAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTD 134
Query: 128 DYHGGFEEAEI-DKVFRAMEANYEAWAYGYAPLAVGADVPAAVR---EFSRTLFNMRPDI 183
D G E D + A++A+ A+ G+ D R E R +N
Sbjct: 135 DNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASG 194
Query: 184 SLFVSK---TVFDTDLRGILGLVRVPCVIIQTSKDVSVPV-SVAEYLQRHLGGRNTVELL 239
F + T + TD R + + VP +I+ + D ++P+ + A + L + E +
Sbjct: 195 GFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKAL---PSAEYV 251
Query: 240 KIEGHLPH 247
++EG PH
Sbjct: 252 EVEG-APH 258
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 97/243 (39%), Gaps = 26/243 (10%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYLNH--HRVIMFDLVCAGSVNPDYFDFRRYTTLDA 71
GTG + +VL HG+ +W+ +P L +RVI +D G + + + D
Sbjct: 25 GTG-KPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYE----YDT 79
Query: 72 YVDDLLNILDTLGVNRCAYVGHSVSA-MIGLLASIRRPDLFTKLILIGASPRFLNDEDYH 130
+ DL +L+ L + VG S + S D K++ GA P +L + H
Sbjct: 80 FTSDLHQLLEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDH 139
Query: 131 --GGFEEAEIDKVFRAMEAN-----YEAWAYGYAPLAVGADVPAAVREFSRTLFNM---- 179
G ++A I+ F++ N + + G+ A G D V E R L+N
Sbjct: 140 PEGALDDATIE-TFKSGVINDRLAFLDEFTKGF--FAAG-DRTDLVSESFR-LYNWDIAA 194
Query: 180 --RPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVE 237
P +L TD R L +P +II D +VP + L + V
Sbjct: 195 GASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVA 254
Query: 238 LLK 240
L+K
Sbjct: 255 LIK 257
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 30/201 (14%)
Query: 5 LEALHVRVVGTGDR----ILVLAHGFGTDQSAWQRILPYLNHHRVIMFDLVCAGSVNPDY 60
E L + V G R + HG + +W +L + +F V PD
Sbjct: 30 FEGLRMHYVDEGPRDAEHTFLCLHG----EPSWS----FLYRKMLPVFTAAGGRVVAPDL 81
Query: 61 FDFRRYT--------TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFT 112
F F R T + LL LD L + R V ++GL + RP L
Sbjct: 82 FGFGRSDKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVD 141
Query: 113 KLIL------IGASP--RFLNDEDYHGGFEEAEIDKVF-RAMEANYEAWAYGYAPLAVGA 163
+LI+ +G SP F + D+ + ++ K+ RA+ +A Y G
Sbjct: 142 RLIVMNTALAVGLSPGKGFESWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAPFPGP 201
Query: 164 DVPAAVREFSRTLFNMRPDIS 184
+ A VR F + + PD+
Sbjct: 202 EFKAGVRRFP-AIVPITPDME 221
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 17/157 (10%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG-SVNPD- 59
L ++ R G D +VL HG T W+ ILP ++ I DL+ G S PD
Sbjct: 15 LGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 60 ---YFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLIL 116
+FD RY LDA+++ GV V + + RRPD L
Sbjct: 75 AYRFFDHVRY--LDAFIEQ-------RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAF 125
Query: 117 IGASPRFLNDEDYHGGFEEAEIDKVFRAMEANYEAWA 153
+ +D+H EA VFR E A
Sbjct: 126 MEFIRPMPTWQDFHQDHAEA-ARAVFRKFRTPGEGEA 161
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 33 WQRILPYL-NHHRVIMFDLVCAG-SVNPD--YFDFRRYTTLDAYVDDLLNILDTLGVNRC 88
W+ ++P L H+RVI D++ G + PD Y RR L D + ++ G +
Sbjct: 55 WRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLH----DFIKAMNFDG--KV 108
Query: 89 AYVGHSVSAMIGLLASIRRPDLFTKLILIGAS 120
+ VG+S+ GL S+ +L L+L+G++
Sbjct: 109 SIVGNSMGGATGLGVSVLHSELVNALVLMGSA 140
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 20 LVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAGSVN-----PDYFDFRRYTTLDAYV 73
L+L HG+ W +I P L N+ V+ DL G + P + ++ +
Sbjct: 28 LLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVM----A 83
Query: 74 DDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASP 121
D + ++ LG + VGH A + ++ P KL L+ +P
Sbjct: 84 QDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAP 131
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 100/260 (38%), Gaps = 23/260 (8%)
Query: 5 LEALHVRVV-----GTGDRILVLAHGFGTDQSAWQRILPYLNHH-----RVIMFDLVCAG 54
LE H R+ G G +L++ HG + S+ P L RVI DL G
Sbjct: 8 LETSHGRIAVRESEGEGAPLLMI-HG---NSSSGAIFAPQLEGEIGKKWRVIAPDLPGHG 63
Query: 55 SVNPDYFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKL 114
+ D D R +++ Y D + ++ LG+ G S+ IG+ R P++ L
Sbjct: 64 K-STDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM-RGL 121
Query: 115 ILIGASPRFLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREF-S 173
++ G P + E+ GF+ D E E YA G A++ + +
Sbjct: 122 MITGTPP--VAREEVGQGFKSGP-DMALAGQEIFSERDVESYARSTCGEPFEASLLDIVA 178
Query: 174 RTLFNMRPDI-SLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGG 232
RT R + F S T + R I+ ++P ++ + V + ++
Sbjct: 179 RTDGRARRIMFEKFGSGT--GGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLW 236
Query: 233 RNTVELLKIEGHLPHLSAPA 252
++ GH P APA
Sbjct: 237 EGKTHVIDNAGHAPFREAPA 256
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 19/165 (11%)
Query: 69 LDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRP-DLFTKLILIGASPRFL-ND 126
+D Y DD+ ++ LG+ +VGHS + R P D K +LI A P +
Sbjct: 72 MDHYADDVAAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQT 131
Query: 127 EDYHGGFEEAEIDKVFRAMEANYEAW---------AYGYAPLAVGADVPAAVREFSRTLF 177
GG ++ D F+A A+ A YGY V A + + +
Sbjct: 132 PGNPGGLPKSVFDG-FQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMI 190
Query: 178 NMRP---DISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVP 219
D + S+T F DL+GI + P +++ D VP
Sbjct: 191 GSAKAHYDGIVAFSQTDFTEDLKGI----QQPVLVMHGDDDQIVP 231
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 5 LEALHVRVV-----GTGDRILVLAHGFGTDQSAWQRILPYLNHH-----RVIMFDLVCAG 54
LE H R+ G G +L++ HG + S+ P L RVI DL G
Sbjct: 8 LETSHGRIAVRESEGEGAPLLMI-HG---NSSSGAIFAPQLEGEIGKKWRVIAPDLPGHG 63
Query: 55 SVNPDYFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKL 114
+ D D R +++ Y D + ++ LG+ G S+ IG+ R P++ L
Sbjct: 64 K-STDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM-RGL 121
Query: 115 ILIGASP 121
++ G P
Sbjct: 122 MITGTPP 128
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 20 LVLAHG-FGTDQSAWQRILPYLNHHRVIMFDLVCAGSVNPDYFDFRRYTTLD--AYVDDL 76
+VL HG FG+ + +N H +I D+ G ++P R ++ A DL
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHG-LSP------REPVMNYPAMAQDL 71
Query: 77 LNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLNDEDYHGGFEEA 136
++ LD +++ ++GHS+ + + PD KL+ I +P DYH
Sbjct: 72 VDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP-----VDYHVRRH-- 124
Query: 137 EIDKVFRAMEANYEA 151
D++F A+ A E+
Sbjct: 125 --DEIFAAINAVSES 137
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG-SVNPD- 59
L ++ R G D +VL HG T W+ ILP ++ I DL+ G S PD
Sbjct: 15 LGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 60 ---YFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLIL 116
+FD RY LDA+++ GV V + + RRPD L
Sbjct: 75 AYRFFDHVRY--LDAFIEQ-------RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAF 125
Query: 117 IGASPRFLNDEDYH 130
+ +D+H
Sbjct: 126 MEFIRPMPTWQDFH 139
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 4 LLEALHVRVVGTGDRILVL-AHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG-SVNPD- 59
L ++ R G D +VL HG T W+ ILP ++ I DL+ G S PD
Sbjct: 15 LGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 60 ---YFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLIL 116
+FD RY LDA+++ GV V + + RRPD L
Sbjct: 75 AYRFFDHVRY--LDAFIEQ-------RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAF 125
Query: 117 IGASPRFLNDEDYH 130
+ +D+H
Sbjct: 126 MEFIRPMPTWQDFH 139
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 43 HRVIMFDLVCAGSVNPDYFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLL 102
+R+++FD +G P + D TT D V D+ + LGV+R G S + + L
Sbjct: 61 YRIVLFDQRGSGRSTP-HADLVDNTTWD-LVADIERLRTHLGVDRWQVFGGSWGSTLALA 118
Query: 103 ASIRRPDLFTKLILIG 118
+ P T+L+L G
Sbjct: 119 YAQTHPQQVTELVLRG 134
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 39/207 (18%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYL--NHHRVIMFD---LVCAGSVNPDYFD 62
L+ G+G + VL HG+ D +W+R L +RVI +D + VN Y
Sbjct: 15 LYYEDQGSGQPV-VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGY-- 71
Query: 63 FRRYTTLDAYVDDLLNILD---------TLGVNRCA-YV---GHSVSAMIGLLAS----- 104
Y T A + +L LD ++G A YV GH A + LAS
Sbjct: 72 --DYDTFAADLHTVLETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFL 129
Query: 105 IRRPD--------LFTKLILIGASPRFLNDEDYHGGFEEAEIDKVFRAME-ANYEAW--A 153
++R D +F + RF D++ F + + R E A +W A
Sbjct: 130 VQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQAVTGSWNVA 189
Query: 154 YGYAPLAVGADVPAAVREFSRTLFNMR 180
G AP+A A VPA + +F + +R
Sbjct: 190 IGSAPVAAYAVVPAWIEDFRSDVEAVR 216
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 72 YVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASP 121
Y DD+ ++ TL VGHS+ A + A+ + PDL ++ I +P
Sbjct: 120 YADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTP 169
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 99/260 (38%), Gaps = 23/260 (8%)
Query: 5 LEALHVRVV-----GTGDRILVLAHGFGTDQSAWQRILPYLNHH-----RVIMFDLVCAG 54
LE H R+ G G +L++ HG + S+ P L RVI DL G
Sbjct: 8 LETSHGRIAVRESEGEGAPLLMI-HG---NSSSGAIFAPQLEGEIGKKWRVIAPDLPGHG 63
Query: 55 SVNPDYFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKL 114
+ D D R +++ Y D + ++ LG+ G + IG+ R P++ L
Sbjct: 64 K-STDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWGLGGHIGIEMIARYPEM-RGL 121
Query: 115 ILIGASPRFLNDEDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREF-S 173
++ G P + E+ GF+ D E E YA G A++ + +
Sbjct: 122 MITGTPP--VAREEVGQGFKSGP-DMALAGQEIFSERDVESYARSTCGEPFEASLLDIVA 178
Query: 174 RTLFNMRPDI-SLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGG 232
RT R + F S T + R I+ ++P ++ + V + ++
Sbjct: 179 RTDGRARRIMFEKFGSGT--GGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLW 236
Query: 233 RNTVELLKIEGHLPHLSAPA 252
++ GH P APA
Sbjct: 237 EGKTHVIDNAGHAPFREAPA 256
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG---SVNPDYFDFRRYTTL 69
GTGD IL HG T W+ I+P+ R+I DL+ G ++P + Y
Sbjct: 27 GTGDPIL-FQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEH 85
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSVSAMIGL 101
Y+D L LD LG +R V H + +G
Sbjct: 86 RDYLDALWEALD-LG-DRVVLVVHDWGSALGF 115
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG---SVNPDYFDFRRYTTL 69
GTGD IL HG T W+ I+P+ R+I DL+ G ++P + Y
Sbjct: 27 GTGDPIL-FQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEH 85
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSVSAMIGL 101
Y+D L LD LG +R V H + +G
Sbjct: 86 RDYLDALWEALD-LG-DRVVLVVHDWGSALGF 115
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG---SVNPDYFDFRRYTTL 69
GTGD IL HG T W+ I+P+ R+I DL+ G ++P + Y
Sbjct: 26 GTGDPIL-FQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEH 84
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSVSAMIGL 101
Y+D L LD LG +R V H + +G
Sbjct: 85 RDYLDALWEALD-LG-DRVVLVVHDWGSALGF 114
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYL-NHHRVIMFDLVCAG---SVNPDYFDFRRYTTL 69
GTGD IL HG T W+ I+P+ R+I DL+ G ++P + Y
Sbjct: 27 GTGDPIL-FQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEH 85
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSVSAMIGL 101
Y+D L LD LG +R V H + +G
Sbjct: 86 RDYLDALWEALD-LG-DRVVLVVHDWGSALGF 115
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 19 ILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAGSVNPDYF--DFRRYTTLDAYVDD 75
++VL G G S W L L ++V+ +D G+ NPD D+ ++ +
Sbjct: 17 VVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGN-NPDTLAEDY----SIAQXAAE 71
Query: 76 LLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILI 117
L L G+ A VGH++ A++G ++ P T LI +
Sbjct: 72 LHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISV 113
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAW----QRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
+H G G+ +++L HG G W + + P+++ +RVI+ D + D
Sbjct: 25 IHYNEAGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD 83
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
+R V L++ LD ++R VG+S+ L ++ PD KLIL+G
Sbjct: 84 EQRGLVNARAVKGLMDALD---IDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 45 VIMFDLV-CAGSVN-PDY-FDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGL 101
VI +D V C S + PD DF T +VD+ + LG+ R +G S M+G
Sbjct: 85 VIHYDQVGCGNSTHLPDAPADFW---TPQLFVDEFHAVCTALGIERYHVLGQSWGGMLGA 141
Query: 102 LASIRRPDLFTKLILIGASPRFLNDEDYHGGFEEAEIDKVFRAMEANYEA 151
++R+P L + SP + G A++ RA +EA
Sbjct: 142 EIAVRQPSGLVSLAICN-SPASMRLWSEAAGDLRAQLPAETRAALDRHEA 190
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAW----QRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
+H G G+ +++L HG G W + + P+++ +RVI+ D + D
Sbjct: 25 IHYNEAGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD 83
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
+R V L++ LD ++R VG+S+ L ++ PD KLIL+G
Sbjct: 84 EQRGLVNARAVKGLMDALD---IDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 102/260 (39%), Gaps = 37/260 (14%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAWQRILPYL--NHHRVIMFDLVCAGSVNPDYFDFRR 65
++ + G+G I V +HG+ + +W+ + +L +RVI D G + +
Sbjct: 11 IYYKDWGSGQPI-VFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPW----S 65
Query: 66 YTTLDAYVDDLLNILDTLGVNRCAYVGHS-----VSAMIGLLASIRRPDLFTKLILIGA- 119
+D Y DDL +++ L + G S V+ IG + R K LI A
Sbjct: 66 GNDMDTYADDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTAR----VAKAGLISAV 121
Query: 120 SPRFLNDEDYHGGFEEAEIDKVFRAMEAN----YEAWAYG--YAPLAVGADVPAAVREF- 172
P L E GG D + +A A+ Y+ A G + GA A + ++
Sbjct: 122 PPLMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWF 181
Query: 173 -----SRTLFNMRPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQ 227
+ N I F S+T F DL+ I VP +++ D VP+ +
Sbjct: 182 WLQGMAAGHKNAYDCIKAF-SETDFTEDLKKI----DVPTLVVHGDADQVVPIEASGIAS 236
Query: 228 RHLGGRNTVELLKIEGHLPH 247
L +T LKI PH
Sbjct: 237 AALVKGST---LKIYSGAPH 253
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 21/177 (11%)
Query: 69 LDAYVDDLLNILDTLGVNRCAYVGHSVSA--MIGLLASIRRPDLFTKLILIGASPRFLND 126
+D Y DD +++ LG + +VGHS ++ +A ++ +++ P +
Sbjct: 76 MDHYADDAAAVVEKLGTHGAMHVGHSTGGGEVVRYIARHGERNVSKAVLISSVPPLMVKT 135
Query: 127 EDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLA--VGADVPAAVREFSRTLFNM----- 179
G ++ D F+A A A Y P G + P A + ++N
Sbjct: 136 SSNPNGTPKSVFDD-FQAHVAANRAQFYLDVPAGPFYGYNRPGA-KPSEGVIYNWWRQGM 193
Query: 180 ------RPDISLFVSKTVFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHL 230
+ D + S+T F DL+GI +P ++I D VP + + L L
Sbjct: 194 MGSTKAQYDGIVAFSQTDFTNDLKGIT----IPVLVIHGDDDQVVPYADSGVLSAKL 246
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAW----QRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
+H G G+ +++L HG G W + + P+++ +RVI+ D + D
Sbjct: 25 IHYNEAGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD 83
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
+R V L++ LD ++R VG+++ L ++ PD KLIL+G
Sbjct: 84 EQRGLVNARAVKGLMDALD---IDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAW----QRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
+H G G+ +++L HG G W + + P+++ +RVI+ D + D
Sbjct: 25 IHYNEAGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD 83
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
+R V L++ LD ++R VG+++ L ++ PD KLIL+G
Sbjct: 84 EQRGLVNARAVKGLMDALD---IDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAW----QRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
+H G G+ +++L HG G W + + P+++ +RVI+ D + D
Sbjct: 22 IHYNEAGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD 80
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
+R V L++ LD ++R VG+++ L ++ PD KLIL+G
Sbjct: 81 EQRGLVNARAVKGLMDALD---IDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 133
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 8 LHVRVVGTGDRILVLAHGFGTDQSAW----QRILPYLNH-HRVIMFDLVCAGSVNPDYFD 62
+H G G+ +++L HG G W + + P+++ +RVI+ D + D
Sbjct: 25 IHYNEAGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD 83
Query: 63 FRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIG 118
+R V L++ LD ++R VG+++ L ++ PD KLIL+G
Sbjct: 84 EQRGLVNARAVKGLMDALD---IDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 33/220 (15%)
Query: 20 LVLAHGFGTDQSAWQRILPYLNHHRVIMFDLVCAGSVNPDYFDFRRYTTLDAYVDDLLNI 79
L+ HG G + + + YL + I+ DL G + +T+ Y+D++ N
Sbjct: 19 LLFVHGSGCNLKIFGELEKYLEDYNCILLDLKGHGESKG-----QCPSTVYGYIDNVANF 73
Query: 80 LDTLGVNR----CAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLN-DEDYHGGFE 134
+ V + +G+S I L ++++ K++ + RF D+D+
Sbjct: 74 ITNSEVTKHQKNITLIGYSXGGAIVLGVALKKLPNVRKVVSLSGGARFDKLDKDF----- 128
Query: 135 EAEIDKVF-RAMEANYEAWAYGYAPLAVGADVPAAVREFSRTLFNMRPDI---SLFVSKT 190
+K++ ++ NY G G D P + + F PDI L K
Sbjct: 129 ---XEKIYHNQLDNNYLLECIG------GIDNPLSEKYFET--LEKDPDIXINDLIACKL 177
Query: 191 VFDTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHL 230
+ DL L + +P I ++ V +E +++ +
Sbjct: 178 I---DLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEV 214
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 93/252 (36%), Gaps = 23/252 (9%)
Query: 20 LVLAHGFGTDQSAW-QRILPYLNH-HRVIMFDLVCAG-SVNPDYFDFRRYTTLDAYVDDL 76
+V HG+ W ++L +L+H +RVI D G S P +D Y D+
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP-----STGHDMDTYAADV 78
Query: 77 LNILDTLGVNRCAYVGHSV-SAMIGLLASIRRPDLFTKLILIGASPRFLNDEDYHGGFEE 135
+ + L + ++GHS + + P K +L+ A P + D +
Sbjct: 79 AALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLP 138
Query: 136 AEIDKVFRAMEANYEAWAYGYAPLAV-------GADVPAAVREFSRTLFNMRPDISLFVS 188
E+ FRA A A Y P GA V + + M + +
Sbjct: 139 LEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYEC 198
Query: 189 KTVF-DTDLRGILGLVRVPCVIIQTSKDVSVPVSVAEYLQRHLGGRNTVELLKIEGHLPH 247
F +TD L + VP ++ + D VP + A L T L EG LPH
Sbjct: 199 IAAFSETDFTDDLKRIDVPVLVAHGTDDQVVPYADAAPKSAELLANAT--LKSYEG-LPH 255
Query: 248 ---LSAPAIVGP 256
+ P ++ P
Sbjct: 256 GMLSTHPEVLNP 267
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 2 GDLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNHHRVIMF--DLVCAGSVNPD 59
G L + + GT ++ ++HG G ++ + L +++F D V G +
Sbjct: 45 GQYLFCRYWKPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGE 104
Query: 60 YFDFRRYTTLDAYVDDLLNILDTLGVNRCAY----VGHSVSAMIGLLASIRRPDLFTKLI 115
+ +V D+L +D++ + +GHS+ I +L + RP F ++
Sbjct: 105 RM---VVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMV 161
Query: 116 LIGASPRFLNDEDYHGGFE 134
LI SP L + + F+
Sbjct: 162 LI--SPLVLANPESATTFK 178
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 2 GDLLEALHVRVVGTGDRILVLAHGFGTDQSAWQRILPYLNHHRVIMF--DLVCAGSVNPD 59
G L + + GT ++ ++HG G ++ + L +++F D V G +
Sbjct: 44 GQYLFCRYWKPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGE 103
Query: 60 YFDFRRYTTLDAYVDDLLNILDTLGVNRCAY----VGHSVSAMIGLLASIRRPDLFTKLI 115
+ +V D+L +D++ + +GHS+ I +L + RP F ++
Sbjct: 104 RMVVSDF---HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMV 160
Query: 116 LIGASPRFLNDEDYHGGFE 134
LI SP L + + F+
Sbjct: 161 LI--SPLVLANPESATTFK 177
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 119 ASPRFLNDEDY----HGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVGADVPAAVREFSR 174
A P ND D +GG EAE +++ WA APL +G DV + ++
Sbjct: 207 AGPGGWNDPDMLEVGNGGMSEAEY-------RSHFSIWALAKAPLLIGCDVRSMSQQTKN 259
Query: 175 TLFN 178
L N
Sbjct: 260 ILSN 263
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 22/117 (18%)
Query: 20 LVLAHGFGTDQSAWQRILPYL-------NH--HRVIMFDLVCAGS----------VNPDY 60
LV HG G + W+ LP L N+ +V++ D V G N ++
Sbjct: 55 LVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAVRNRGRLGTNFNW 114
Query: 61 FDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILI 117
D R L +L +I +N +GHS+ L + +P+LF LILI
Sbjct: 115 IDGAR-DVLKIATXELGSIDSHPALN--VVIGHSMGGFQALACDVLQPNLFHLLILI 168
>pdb|3FLA|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
BIOSYNTHETIC Pathway - Form 1
pdb|3FLA|B Chain B, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
BIOSYNTHETIC Pathway - Form 1
Length = 267
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPD--LFTKLILIGA---SPR 122
++ + LL +L G A GHS A+IG ++R P+ L + L + +P
Sbjct: 68 SIGGLTNRLLEVLRPFGDRPLALFGHSXGAIIGYELALRXPEAGLPAPVHLFASGRRAPS 127
Query: 123 FLNDEDYHGGFEE---AEIDKV 141
D+D G +E AE+ K+
Sbjct: 128 RYRDDDVRGASDERLVAELRKL 149
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 14 GTGDRILVLA-HGFGTDQSAWQRI-LPYLNH-HRVIMFDLVCAG-SVNPDYFDFRRYTTL 69
G+ + +VL HG AWQ + LP +RV+ DL G S + + T
Sbjct: 22 GSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTF 81
Query: 70 DAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILI 117
A +D ++ L VGHS+ AM+ + RP +LIL+
Sbjct: 82 LAQID---RVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 16 GDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG----SVNPDYFDFRRYTTLD 70
+ ++ HG T W+ ++P++ R I+ DL+ G S N Y Y L
Sbjct: 42 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 101
Query: 71 AYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLI 115
A+ +LLN+ + +VGH A + + D ++
Sbjct: 102 AWF-ELLNL-----PKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 9 HVRVVGTGDRI-LVLAHGFGTDQSAW-QRILPYLNHHRVIMFDLVCAGSVNPDYFDFRRY 66
HV G D LVL HG + W I + + +R D++ G N +
Sbjct: 58 HVIASGPEDAPPLVLLHGALFSSTXWYPNIADWSSKYRTYAVDII--GDKNKSIPENVSG 115
Query: 67 TTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFL 124
T D Y + LL++ D LG+ + +G S+ + +R P+ ++ + FL
Sbjct: 116 TRTD-YANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETFL 172
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 16 GDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG----SVNPDYFDFRRYTTLD 70
+ ++ HG T W+ ++P++ R I+ DL+ G S N Y Y L
Sbjct: 43 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 102
Query: 71 AYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLI 115
A+ +LLN+ + +VGH A + + D ++
Sbjct: 103 AWF-ELLNL-----PKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 16 GDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG----SVNPDYFDFRRYTTLD 70
+ ++ HG T W+ ++P++ R I+ DL+ G S N Y Y L
Sbjct: 43 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 102
Query: 71 AYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLI 115
A+ +LLN+ + +VGH A + + D ++
Sbjct: 103 AWF-ELLNL-----PKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 16 GDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAG----SVNPDYFDFRRYTTLD 70
+ ++ HG T W+ ++P++ R I+ DL+ G S N Y Y L
Sbjct: 42 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 101
Query: 71 AYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLI 115
A+ +LLN+ + +VGH A + + D ++
Sbjct: 102 AWF-ELLNL-----PKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYL--NHHRVIMFDLVCAGSV-NPDYFDFRRYTTLD 70
GTGD ++ +A G ++ +P +R I FD G+ N + F T
Sbjct: 41 GTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGF------TTQ 94
Query: 71 AYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLNDEDYH 130
V D +++TL + VG S+ A I + P+L + +L+ R +
Sbjct: 95 TMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQF- 153
Query: 131 GGFEEAEID 139
F +AE +
Sbjct: 154 --FNKAEAE 160
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 13 VGTGDRILVLAHGFGTDQSAWQRILPYLNHHRVIMF--DLVCAGSVNPDYFDFRRYTTLD 70
GT ++ ++HG G ++ + L +++F D V G + +
Sbjct: 38 TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDF---H 94
Query: 71 AYVDDLLNILDTLGVNRCAY----VGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLND 126
+V D+L +D++ + +GHS+ I +L + RP F ++LI SP L +
Sbjct: 95 VFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI--SPLVLAN 152
Query: 127 EDYHGGFE 134
+ F+
Sbjct: 153 PESATTFK 160
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,3-Propandiol
Length = 300
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAGS---VNPDYFDFRRYTTL 69
G GD I V HG T W+ I+P+L R++ DL+ G+ ++P D Y
Sbjct: 28 GKGDAI-VFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGEQ 86
Query: 70 DAYVDDLLNILD 81
++ L + LD
Sbjct: 87 RDFLFALWDALD 98
>pdb|3FLB|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
Biosynthetic Pathway - Form 2
Length = 267
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 68 TLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPD--LFTKLILIGA---SPR 122
++ + LL +L G A GH++ A+IG ++R P+ L + L + +P
Sbjct: 68 SIGGLTNRLLEVLRPFGDRPLALFGHAMGAIIGYELALRMPEAGLPAPVHLFASGRRAPS 127
Query: 123 FLNDEDYHGGFEE---AEIDKV 141
D+D G +E AE+ K+
Sbjct: 128 RYRDDDVRGASDERLVAELRKL 149
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 14 GTGDRILVLAHGFGTDQSAWQRILPYLNH-HRVIMFDLVCAGS---VNPDYFDFRRYTTL 69
G GD I V HG T W+ I+P+L R++ DL+ G+ ++P D Y
Sbjct: 26 GKGDAI-VFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGEQ 84
Query: 70 DAYVDDLLNILD 81
++ L + LD
Sbjct: 85 RDFLFALWDALD 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,221,570
Number of Sequences: 62578
Number of extensions: 345036
Number of successful extensions: 1082
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 115
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)