BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024682
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169
+ ++CAVCL+E ED E R LP+C H FH +C+DMW SHS CPLCR V
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 105 RIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPL 164
++P++ ++PN ++ L C VC+ +FE + RVLP C H FH C+D W +++ CP+
Sbjct: 8 QLPSYRFNPNNHQSEQTL-CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPI 65
Query: 165 CRA 167
CRA
Sbjct: 66 CRA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170
C +CLS E+ E+ R LP C H+FH C+D W ++ CP+CR ++
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIE 62
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHP 178
L+C VC ++ E+ R LP C H+FH CI W + H +CP+CR + T +P
Sbjct: 16 LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169
CAVCL +F+ + + P C+H FH C+ W + CPLC PV
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 87 MNTAPPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHV 146
M PP + +++D +P + + + + + C +C SE+ + LP C H
Sbjct: 11 MVANPPASKESID-----ALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHY 64
Query: 147 FHVDCIDMWFQSHSNCPLCRA 167
FH C+ +W Q CP+CR
Sbjct: 65 FHKPCVSIWLQKSGTCPVCRC 85
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 112 SPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 166
S ++ + +C +C+ D +LP C H F CID W H NCP+CR
Sbjct: 6 SGRVKQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170
C +CL ED N + C H F CI W + + CPLC+ PV+
Sbjct: 8 CPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 114 NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQL 171
++E E C +C + D R+ P C + CI W + + CP CRAP+QL
Sbjct: 15 SVESIAEVFRCFICXEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 112 SPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSN---CPLCRAP 168
S N++ +E L+C +C+ F + + L C H C++ S N CP C
Sbjct: 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS-- 63
Query: 169 VQLDITLVHPLVQVEEVVSVIE 190
IT + L Q+ + ++V++
Sbjct: 64 ---KITRITSLTQLTDNLTVLK 82
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 118 PKEPLDCAVCLSEF-EDNENGRVL--PKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169
P + C +C+ + E +NGR++ +C HVF C+ ++ + CP CR +
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 118 PKEPLDCAVCLSEF-EDNENGRVL--PKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169
P + C +C+ + E +NGR++ +C HVF C+ ++ + CP CR +
Sbjct: 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170
L C +C F + V C H F CI+ W + CP+CR ++
Sbjct: 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.0 bits (71), Expect = 0.34, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 122 LDCAVCLSEF-EDNENGRVL--PKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169
+ C +C+ + E +NGR++ +C HVF C+ ++ + CP CR +
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170
L C +C F + V C H F CI+ W + CP+CR ++
Sbjct: 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170
L C +C F + V C H F CI+ W + CP+CR ++
Sbjct: 64 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 166
C C +E + + V +C H FH C+ +W + ++ CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 104 KRIPAFVYSPNIEDPKEPLDCAVCLSEF-EDNENGRVL--PKCRHVFHVDCIDMWFQSHS 160
K+I Y P I + C +C+ + E +NGR++ +C HVF C+ ++ +
Sbjct: 56 KKINHKRYHP-IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN 114
Query: 161 NCPLCRAPVQLDITLVHPL 179
CP CR +++ HP+
Sbjct: 115 TCPTCRK--KINHKRYHPI 131
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 122 LDCAVCLSEF-EDNENGRVL--PKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHP 178
+ C +C+ + E +NGR++ +C HVF C+ ++ + CP CR +++ HP
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK--KINHKRYHP 65
Query: 179 LVQVEEVVS 187
+ VS
Sbjct: 66 IYIGSGTVS 74
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 30.8 bits (68), Expect = 0.72, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAP 168
P C +C F++ V+ KCRH F C F++ C +C P
Sbjct: 15 PFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQP 58
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 115 IEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH------SNCPLCRAP 168
+E KE + C +CL ++ V C H F CI + ++S+ NCP+CR P
Sbjct: 13 LEMIKEEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 113 PNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172
P+ E+ K DC VC ++ VL CRH D +FQ CP+CR VQ
Sbjct: 10 PSEENSK---DCVVC----QNGTVNWVLLPCRHTCLCDGCVKYFQ---QCPMCRQFVQES 59
Query: 173 ITLVHP 178
L P
Sbjct: 60 FALSGP 65
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 123 DCAVCLSEFEDNEN-GRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAP 168
C +CL + + VLP C H+ H C + + CPLC P
Sbjct: 7 GCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 143 CRHVFHVDCIDMWFQSHSNCPL 164
C H FH CI W ++ CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 143 CRHVFHVDCIDMWFQSHSNCPL 164
C H FH CI W ++ CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 143 CRHVFHVDCIDMWFQSHSNCPL 164
C H FH CI W ++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 143 CRHVFHVDCIDMWFQSHSNCPL 164
C H FH CI W ++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 143 CRHVFHVDCIDMWFQSHSNCPL 164
C H FH CI W ++ CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 143 CRHVFHVDCIDMWFQSHSNCPL 164
C H FH CI W ++ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 143 CRHVFHVDCIDMWFQSHSNCPL 164
C H FH CI W ++ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 107 PAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 166
P I+D L C +C FE ++P+C H + CI + + CP C
Sbjct: 11 PGLAVMKTIDDL---LRCGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCC 64
Query: 167 APV 169
V
Sbjct: 65 VTV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,865,633
Number of Sequences: 62578
Number of extensions: 239184
Number of successful extensions: 426
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 40
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)