Query 024682
Match_columns 264
No_of_seqs 283 out of 2085
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 4.7E-20 1E-24 168.5 13.0 76 96-173 205-281 (348)
2 COG5243 HRD1 HRD ubiquitin lig 99.7 2.3E-16 5E-21 143.2 11.9 125 118-253 284-419 (491)
3 PF13639 zf-RING_2: Ring finge 99.5 7.9E-15 1.7E-19 96.2 2.2 44 122-166 1-44 (44)
4 PHA02929 N1R/p28-like protein; 99.3 8.9E-13 1.9E-17 115.9 4.9 76 95-170 147-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 4.4E-12 9.4E-17 92.2 4.3 45 121-166 19-73 (73)
6 COG5540 RING-finger-containing 99.3 3.1E-12 6.7E-17 113.9 3.4 52 119-171 321-373 (374)
7 KOG0317 Predicted E3 ubiquitin 99.0 4E-10 8.7E-15 100.1 6.5 51 119-173 237-287 (293)
8 PLN03208 E3 ubiquitin-protein 99.0 4.7E-10 1E-14 95.2 4.0 49 119-171 16-80 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 5.9E-10 1.3E-14 74.9 3.3 46 121-170 2-48 (50)
10 KOG0320 Predicted E3 ubiquitin 98.9 7.1E-10 1.5E-14 92.2 4.1 53 117-171 127-179 (187)
11 KOG0823 Predicted E3 ubiquitin 98.9 6.2E-10 1.3E-14 96.2 3.4 51 118-172 44-97 (230)
12 cd00162 RING RING-finger (Real 98.9 1.1E-09 2.4E-14 70.4 3.3 44 123-169 1-45 (45)
13 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.1E-09 2.3E-14 69.8 2.6 39 124-165 1-39 (39)
14 KOG0802 E3 ubiquitin ligase [P 98.9 4.6E-09 9.9E-14 103.3 7.2 50 120-170 290-341 (543)
15 PF12861 zf-Apc11: Anaphase-pr 98.8 2.2E-09 4.8E-14 79.5 3.6 51 120-170 20-82 (85)
16 PHA02926 zinc finger-like prot 98.8 1.6E-09 3.6E-14 93.2 3.2 53 118-170 167-230 (242)
17 PF15227 zf-C3HC4_4: zinc fing 98.7 6.2E-09 1.3E-13 67.5 2.7 38 124-165 1-42 (42)
18 PF14634 zf-RING_5: zinc-RING 98.7 1E-08 2.2E-13 67.1 3.2 44 123-167 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.7 1.1E-08 2.4E-13 65.6 2.2 39 124-165 1-41 (41)
20 TIGR00599 rad18 DNA repair pro 98.6 2.3E-08 4.9E-13 94.1 3.5 52 117-172 22-73 (397)
21 smart00184 RING Ring finger. E 98.6 3.3E-08 7.3E-13 61.2 3.1 38 124-165 1-39 (39)
22 smart00504 Ubox Modified RING 98.6 4.7E-08 1E-12 68.3 3.8 46 122-171 2-47 (63)
23 COG5194 APC11 Component of SCF 98.6 2.7E-08 5.9E-13 72.1 2.4 51 121-171 20-82 (88)
24 KOG1734 Predicted RING-contain 98.5 4.7E-08 1E-12 86.2 1.2 55 118-173 221-284 (328)
25 KOG1493 Anaphase-promoting com 98.4 8.6E-08 1.9E-12 69.0 1.3 51 120-170 19-81 (84)
26 COG5574 PEX10 RING-finger-cont 98.3 2.3E-07 5.1E-12 81.7 2.2 50 120-173 214-265 (271)
27 KOG0828 Predicted E3 ubiquitin 98.3 7.1E-07 1.5E-11 84.6 4.5 52 119-170 569-634 (636)
28 smart00744 RINGv The RING-vari 98.3 7.3E-07 1.6E-11 59.7 2.8 42 123-166 1-49 (49)
29 KOG0287 Postreplication repair 98.2 3.5E-07 7.6E-12 83.1 1.5 51 119-173 21-71 (442)
30 KOG2164 Predicted E3 ubiquitin 98.2 6E-07 1.3E-11 85.6 2.9 48 121-172 186-238 (513)
31 COG5219 Uncharacterized conser 98.2 2.9E-07 6.3E-12 92.6 -0.8 54 117-170 1465-1523(1525)
32 PF04564 U-box: U-box domain; 98.2 1.5E-06 3.2E-11 63.0 2.9 49 120-172 3-52 (73)
33 COG5432 RAD18 RING-finger-cont 98.1 1E-06 2.3E-11 78.6 2.3 47 120-170 24-70 (391)
34 PF13445 zf-RING_UBOX: RING-ty 98.1 2.4E-06 5.2E-11 55.6 2.7 33 124-158 1-34 (43)
35 KOG2177 Predicted E3 ubiquitin 98.1 1.4E-06 3.1E-11 76.9 1.7 47 117-167 9-55 (386)
36 KOG2930 SCF ubiquitin ligase, 98.0 2.1E-06 4.6E-11 65.3 2.0 52 119-170 44-108 (114)
37 PF11793 FANCL_C: FANCL C-term 98.0 7.2E-07 1.6E-11 64.3 -0.8 50 121-170 2-66 (70)
38 TIGR00570 cdk7 CDK-activating 98.0 4.4E-06 9.6E-11 76.0 3.9 51 121-172 3-56 (309)
39 KOG4265 Predicted E3 ubiquitin 98.0 3.7E-06 8E-11 77.2 3.1 49 119-171 288-337 (349)
40 KOG0804 Cytoplasmic Zn-finger 98.0 3.2E-06 7E-11 79.4 2.2 51 118-170 172-222 (493)
41 KOG0827 Predicted E3 ubiquitin 97.9 4.7E-06 1E-10 77.0 2.0 48 122-169 5-55 (465)
42 KOG4172 Predicted E3 ubiquitin 97.8 4.3E-06 9.3E-11 56.5 -0.0 47 121-171 7-55 (62)
43 KOG0978 E3 ubiquitin ligase in 97.7 1E-05 2.2E-10 80.6 0.8 48 120-171 642-690 (698)
44 KOG1039 Predicted E3 ubiquitin 97.7 2.1E-05 4.6E-10 72.9 2.1 54 119-172 159-223 (344)
45 KOG1645 RING-finger-containing 97.6 3.8E-05 8.2E-10 71.6 3.2 51 120-170 3-56 (463)
46 KOG0825 PHD Zn-finger protein 97.6 1.6E-05 3.5E-10 79.1 -0.2 49 122-171 124-172 (1134)
47 KOG1785 Tyrosine kinase negati 97.5 3.2E-05 7E-10 71.9 1.6 47 122-172 370-418 (563)
48 PF14835 zf-RING_6: zf-RING of 97.5 2.3E-05 5.1E-10 54.9 0.1 45 121-170 7-51 (65)
49 KOG0311 Predicted E3 ubiquitin 97.5 1.4E-05 3.1E-10 73.1 -1.5 50 119-171 41-91 (381)
50 KOG0824 Predicted E3 ubiquitin 97.4 5.6E-05 1.2E-09 68.0 1.8 48 121-172 7-55 (324)
51 KOG4445 Uncharacterized conser 97.4 6.2E-05 1.3E-09 67.7 2.1 53 119-172 113-188 (368)
52 KOG3970 Predicted E3 ubiquitin 97.4 4.7E-05 1E-09 65.9 0.7 59 119-179 48-114 (299)
53 KOG0297 TNF receptor-associate 97.1 0.00026 5.6E-09 67.1 2.7 51 118-172 18-69 (391)
54 PF05883 Baculo_RING: Baculovi 97.0 0.00027 5.9E-09 56.8 1.5 43 121-164 26-74 (134)
55 PF11789 zf-Nse: Zinc-finger o 97.0 0.00043 9.3E-09 47.8 1.9 43 119-164 9-53 (57)
56 KOG0826 Predicted E3 ubiquitin 97.0 0.0041 8.9E-08 56.8 8.5 49 118-169 297-345 (357)
57 KOG1428 Inhibitor of type V ad 96.9 0.00068 1.5E-08 71.6 3.2 53 118-171 3483-3545(3738)
58 KOG4159 Predicted E3 ubiquitin 96.8 0.00068 1.5E-08 64.2 2.5 49 119-171 82-130 (398)
59 KOG1941 Acetylcholine receptor 96.6 0.00063 1.4E-08 63.3 0.8 46 121-167 365-413 (518)
60 KOG2879 Predicted E3 ubiquitin 96.4 0.0031 6.8E-08 56.3 3.8 51 117-170 235-287 (298)
61 KOG0801 Predicted E3 ubiquitin 96.4 0.001 2.2E-08 54.9 0.6 29 120-149 176-204 (205)
62 PHA02825 LAP/PHD finger-like p 96.4 0.0035 7.5E-08 51.8 3.4 48 118-170 5-59 (162)
63 COG5152 Uncharacterized conser 96.4 0.0014 3.1E-08 55.9 1.1 46 122-171 197-242 (259)
64 PHA02862 5L protein; Provision 96.3 0.0028 6E-08 51.5 2.5 45 121-170 2-53 (156)
65 KOG2660 Locus-specific chromos 96.2 0.0013 2.7E-08 60.2 0.2 53 117-172 11-63 (331)
66 KOG1002 Nucleotide excision re 96.2 0.002 4.3E-08 62.2 1.4 52 117-172 532-588 (791)
67 COG5236 Uncharacterized conser 96.1 0.0042 9.1E-08 57.2 3.0 69 97-169 37-107 (493)
68 KOG4692 Predicted E3 ubiquitin 96.1 0.006 1.3E-07 56.3 3.9 50 118-171 419-468 (489)
69 KOG1813 Predicted E3 ubiquitin 96.1 0.0024 5.1E-08 57.6 1.1 46 122-171 242-287 (313)
70 KOG1571 Predicted E3 ubiquitin 96.0 0.0023 5.1E-08 59.1 0.7 46 119-171 303-348 (355)
71 KOG4275 Predicted E3 ubiquitin 95.9 0.0022 4.8E-08 57.7 0.1 43 121-171 300-343 (350)
72 PF10367 Vps39_2: Vacuolar sor 95.6 0.0059 1.3E-07 46.6 1.5 33 119-153 76-108 (109)
73 PF12906 RINGv: RING-variant d 95.5 0.0084 1.8E-07 39.6 1.9 40 124-165 1-47 (47)
74 KOG1814 Predicted E3 ubiquitin 95.5 0.0062 1.3E-07 57.2 1.6 49 120-169 183-239 (445)
75 PHA03096 p28-like protein; Pro 95.3 0.0087 1.9E-07 54.4 1.9 46 122-167 179-231 (284)
76 KOG3039 Uncharacterized conser 95.2 0.019 4.1E-07 50.6 3.6 52 121-172 221-272 (303)
77 KOG1952 Transcription factor N 95.2 0.0096 2.1E-07 60.4 1.9 49 119-167 189-244 (950)
78 COG5222 Uncharacterized conser 95.2 0.019 4.1E-07 52.0 3.5 43 122-167 275-318 (427)
79 PF14570 zf-RING_4: RING/Ubox 95.0 0.024 5.2E-07 37.6 2.7 45 124-169 1-47 (48)
80 KOG4739 Uncharacterized protei 94.8 0.011 2.5E-07 51.8 0.9 45 122-170 4-48 (233)
81 KOG2932 E3 ubiquitin ligase in 94.6 0.013 2.8E-07 53.2 1.0 44 122-170 91-134 (389)
82 KOG4185 Predicted E3 ubiquitin 94.6 0.025 5.4E-07 51.3 2.7 47 122-169 4-54 (296)
83 PF08746 zf-RING-like: RING-li 94.2 0.026 5.5E-07 36.6 1.4 41 124-165 1-43 (43)
84 PF10272 Tmpp129: Putative tra 94.1 0.087 1.9E-06 49.4 5.1 29 143-171 311-352 (358)
85 KOG3268 Predicted E3 ubiquitin 94.0 0.037 8E-07 46.6 2.3 31 142-172 189-230 (234)
86 KOG0827 Predicted E3 ubiquitin 93.8 0.0041 8.8E-08 58.0 -4.0 49 121-170 196-245 (465)
87 PF04641 Rtf2: Rtf2 RING-finge 93.6 0.092 2E-06 47.1 4.2 53 119-172 111-163 (260)
88 PF07800 DUF1644: Protein of u 93.5 0.071 1.5E-06 44.1 3.1 52 120-174 1-95 (162)
89 KOG3002 Zn finger protein [Gen 93.1 0.05 1.1E-06 49.9 1.8 45 118-170 45-91 (299)
90 PF14447 Prok-RING_4: Prokaryo 93.1 0.049 1.1E-06 37.1 1.3 45 122-172 8-52 (55)
91 KOG2114 Vacuolar assembly/sort 93.0 0.045 9.7E-07 55.8 1.4 43 121-169 840-882 (933)
92 COG5175 MOT2 Transcriptional r 92.8 0.064 1.4E-06 49.4 2.0 53 121-173 14-67 (480)
93 KOG1940 Zn-finger protein [Gen 92.7 0.068 1.5E-06 48.3 2.0 45 122-167 159-204 (276)
94 KOG1001 Helicase-like transcri 92.1 0.068 1.5E-06 54.2 1.4 47 122-173 455-503 (674)
95 KOG3161 Predicted E3 ubiquitin 92.1 0.051 1.1E-06 53.8 0.5 45 120-167 10-54 (861)
96 KOG1100 Predicted E3 ubiquitin 90.4 0.12 2.6E-06 45.0 1.1 39 124-170 161-200 (207)
97 KOG2034 Vacuolar sorting prote 90.3 0.14 3.1E-06 52.5 1.7 37 118-156 814-850 (911)
98 KOG1609 Protein involved in mR 90.3 0.18 3.9E-06 45.8 2.2 53 119-172 76-136 (323)
99 KOG0309 Conserved WD40 repeat- 90.1 0.17 3.8E-06 51.1 2.0 22 143-164 1048-1069(1081)
100 KOG0298 DEAD box-containing he 90.0 0.1 2.2E-06 55.5 0.3 46 120-168 1152-1197(1394)
101 KOG3053 Uncharacterized conser 89.4 0.18 4E-06 44.8 1.4 53 118-171 17-83 (293)
102 PF05290 Baculo_IE-1: Baculovi 89.1 0.32 6.9E-06 39.1 2.4 53 120-172 79-134 (140)
103 PF14446 Prok-RING_1: Prokaryo 88.8 0.56 1.2E-05 31.9 3.1 41 120-164 4-44 (54)
104 COG5183 SSM4 Protein involved 88.4 0.37 8.1E-06 49.2 3.0 53 118-172 9-68 (1175)
105 KOG3800 Predicted E3 ubiquitin 88.2 0.43 9.4E-06 43.2 2.9 47 123-169 2-50 (300)
106 KOG4367 Predicted Zn-finger pr 87.7 0.31 6.6E-06 46.5 1.8 34 119-156 2-35 (699)
107 KOG2817 Predicted E3 ubiquitin 87.4 0.63 1.4E-05 43.8 3.6 46 120-166 333-381 (394)
108 PF07975 C1_4: TFIIH C1-like d 87.3 0.48 1E-05 31.9 2.1 43 124-166 2-50 (51)
109 KOG4362 Transcriptional regula 87.1 0.18 4E-06 50.6 -0.0 48 120-171 20-70 (684)
110 KOG0825 PHD Zn-finger protein 86.8 0.41 8.8E-06 48.8 2.2 53 120-172 95-156 (1134)
111 KOG3899 Uncharacterized conser 85.5 0.4 8.6E-06 43.5 1.2 29 143-171 325-366 (381)
112 PF15050 SCIMP: SCIMP protein 84.3 4.5 9.7E-05 32.0 6.4 30 33-62 10-39 (133)
113 PF03854 zf-P11: P-11 zinc fin 83.7 0.56 1.2E-05 31.0 1.0 28 143-170 18-46 (50)
114 PF02439 Adeno_E3_CR2: Adenovi 83.3 2.7 5.8E-05 26.4 3.9 16 44-59 17-32 (38)
115 PF15102 TMEM154: TMEM154 prot 83.2 0.32 6.9E-06 39.8 -0.4 9 149-157 127-135 (146)
116 COG5220 TFB3 Cdk activating ki 83.2 0.48 1E-05 41.9 0.7 48 120-167 9-61 (314)
117 TIGR00622 ssl1 transcription f 82.6 1.6 3.4E-05 34.3 3.3 46 121-166 55-110 (112)
118 KOG0269 WD40 repeat-containing 82.5 0.98 2.1E-05 45.9 2.7 40 123-164 781-820 (839)
119 KOG1812 Predicted E3 ubiquitin 81.6 0.56 1.2E-05 44.5 0.6 39 120-158 145-183 (384)
120 PF01102 Glycophorin_A: Glycop 81.4 2.2 4.8E-05 33.9 3.9 11 32-42 66-76 (122)
121 KOG0802 E3 ubiquitin ligase [P 80.9 0.83 1.8E-05 45.3 1.6 46 118-171 476-521 (543)
122 PF08114 PMP1_2: ATPase proteo 80.0 2.3 5E-05 27.1 2.8 24 37-60 14-37 (43)
123 PF02009 Rifin_STEVOR: Rifin/s 78.5 3.6 7.8E-05 37.8 4.8 25 31-55 256-280 (299)
124 PF02891 zf-MIZ: MIZ/SP-RING z 74.8 2.6 5.6E-05 28.0 2.1 43 122-168 3-50 (50)
125 PHA02681 ORF089 virion membran 74.5 8.3 0.00018 28.5 4.8 22 93-114 47-68 (92)
126 PF00558 Vpu: Vpu protein; In 73.8 6.9 0.00015 28.9 4.3 6 48-53 22-27 (81)
127 PF06143 Baculo_11_kDa: Baculo 72.9 4.5 9.7E-05 30.0 3.1 27 25-51 30-56 (84)
128 PF01102 Glycophorin_A: Glycop 72.6 6.2 0.00014 31.4 4.1 13 34-46 65-77 (122)
129 PF03229 Alpha_GJ: Alphavirus 71.9 15 0.00032 29.0 5.9 29 22-50 75-103 (126)
130 KOG4718 Non-SMC (structural ma 69.1 2.7 5.9E-05 36.5 1.5 44 121-167 181-224 (235)
131 PF15176 LRR19-TM: Leucine-ric 69.0 19 0.00041 27.6 5.8 12 6-17 2-13 (102)
132 PF13901 DUF4206: Domain of un 68.7 4 8.6E-05 35.2 2.4 42 120-167 151-197 (202)
133 KOG1812 Predicted E3 ubiquitin 67.3 2.6 5.6E-05 40.1 1.1 47 120-166 305-352 (384)
134 KOG1829 Uncharacterized conser 67.1 2.3 5E-05 42.4 0.7 45 119-167 509-558 (580)
135 PF01708 Gemini_mov: Geminivir 67.0 6.1 0.00013 29.6 2.8 46 19-64 25-70 (91)
136 PF08374 Protocadherin: Protoc 66.1 11 0.00024 32.9 4.5 49 9-58 16-64 (221)
137 PF06679 DUF1180: Protein of u 66.1 14 0.0003 31.0 5.0 28 34-61 94-121 (163)
138 PTZ00046 rifin; Provisional 65.4 6.8 0.00015 36.8 3.4 28 32-59 316-343 (358)
139 TIGR01477 RIFIN variant surfac 65.2 7.3 0.00016 36.5 3.6 28 32-59 311-338 (353)
140 PF14654 Epiglycanin_C: Mucin, 65.2 12 0.00026 28.5 4.1 34 24-57 12-45 (106)
141 PF04277 OAD_gamma: Oxaloaceta 64.8 17 0.00036 26.1 4.8 28 30-57 5-32 (79)
142 PF10571 UPF0547: Uncharacteri 63.7 3.8 8.2E-05 23.5 0.9 23 123-147 2-24 (26)
143 smart00249 PHD PHD zinc finger 63.6 5.4 0.00012 24.7 1.8 30 124-154 2-31 (47)
144 PF06906 DUF1272: Protein of u 63.4 12 0.00025 25.7 3.4 45 123-172 7-54 (57)
145 PHA02650 hypothetical protein; 62.2 16 0.00034 26.8 4.1 19 40-58 56-74 (81)
146 TIGR01478 STEVOR variant surfa 58.9 12 0.00027 34.0 3.8 10 52-61 277-286 (295)
147 KOG1815 Predicted E3 ubiquitin 58.5 6.1 0.00013 38.2 1.9 37 119-158 68-104 (444)
148 KOG2807 RNA polymerase II tran 58.4 8.8 0.00019 35.6 2.7 67 100-167 308-375 (378)
149 PHA02849 putative transmembran 58.2 26 0.00057 25.6 4.6 29 30-59 15-43 (82)
150 PTZ00370 STEVOR; Provisional 58.1 13 0.00028 33.8 3.8 10 52-61 273-282 (296)
151 PF07219 HemY_N: HemY protein 57.3 18 0.00038 27.8 4.0 21 26-46 10-30 (108)
152 KOG3842 Adaptor protein Pellin 56.5 11 0.00024 34.8 3.1 55 119-174 339-418 (429)
153 PF13719 zinc_ribbon_5: zinc-r 56.1 7 0.00015 24.2 1.2 27 122-148 3-36 (37)
154 COG5109 Uncharacterized conser 55.6 14 0.00029 34.2 3.5 45 120-165 335-382 (396)
155 KOG0824 Predicted E3 ubiquitin 55.5 18 0.0004 33.2 4.3 50 120-172 104-153 (324)
156 PF13717 zinc_ribbon_4: zinc-r 55.5 8.4 0.00018 23.7 1.5 27 122-148 3-36 (36)
157 PF15179 Myc_target_1: Myc tar 55.2 32 0.00069 29.3 5.4 30 32-61 21-50 (197)
158 PF07010 Endomucin: Endomucin; 54.4 37 0.0008 30.0 5.8 15 99-113 232-246 (259)
159 KOG3039 Uncharacterized conser 54.3 12 0.00026 33.4 2.8 36 118-157 40-75 (303)
160 PHA02819 hypothetical protein; 54.0 37 0.00081 24.3 4.7 16 40-55 53-68 (71)
161 KOG2066 Vacuolar assembly/sort 53.6 4.7 0.0001 41.3 0.2 45 121-167 784-832 (846)
162 KOG3005 GIY-YIG type nuclease 53.1 8.2 0.00018 34.8 1.6 49 121-169 182-242 (276)
163 PF05568 ASFV_J13L: African sw 53.1 19 0.00041 29.6 3.6 6 55-60 50-55 (189)
164 PF00628 PHD: PHD-finger; Int 52.7 8.2 0.00018 25.0 1.3 43 123-166 1-49 (51)
165 PHA02935 Hypothetical protein; 52.5 35 0.00075 29.8 5.3 38 18-55 300-337 (349)
166 PF01363 FYVE: FYVE zinc finge 52.2 6 0.00013 27.6 0.5 38 119-156 7-44 (69)
167 smart00132 LIM Zinc-binding do 52.0 13 0.00029 22.0 2.1 36 124-169 2-37 (39)
168 PF13179 DUF4006: Family of un 51.4 38 0.00082 24.0 4.4 28 22-49 4-32 (66)
169 KOG2068 MOT2 transcription fac 51.2 12 0.00025 34.8 2.4 47 122-169 250-297 (327)
170 KOG3113 Uncharacterized conser 51.0 14 0.0003 33.1 2.7 51 121-173 111-161 (293)
171 PF02038 ATP1G1_PLM_MAT8: ATP1 50.8 39 0.00084 22.6 4.2 36 24-59 5-40 (50)
172 PHA02844 putative transmembran 50.5 28 0.00061 25.2 3.7 16 40-55 55-70 (75)
173 PF04478 Mid2: Mid2 like cell 49.8 1.2 2.6E-05 36.7 -3.8 20 21-40 38-57 (154)
174 PF02060 ISK_Channel: Slow vol 49.4 46 0.001 26.6 5.2 26 32-57 44-69 (129)
175 PRK00523 hypothetical protein; 49.0 69 0.0015 23.1 5.5 13 39-51 12-24 (72)
176 PF00412 LIM: LIM domain; Int 49.0 15 0.00033 24.2 2.2 39 124-172 1-39 (58)
177 TIGR01478 STEVOR variant surfa 48.6 22 0.00048 32.4 3.6 26 33-58 263-288 (295)
178 PTZ00370 STEVOR; Provisional 48.1 23 0.0005 32.3 3.7 28 33-60 259-286 (296)
179 PF02439 Adeno_E3_CR2: Adenovi 48.0 48 0.001 20.9 4.0 23 41-63 11-33 (38)
180 TIGR01195 oadG_fam sodium pump 45.7 48 0.001 24.4 4.5 27 31-57 9-35 (82)
181 smart00064 FYVE Protein presen 45.5 20 0.00043 24.8 2.4 36 121-156 10-45 (68)
182 PHA03054 IMV membrane protein; 45.3 59 0.0013 23.3 4.6 15 40-54 55-69 (72)
183 KOG2231 Predicted E3 ubiquitin 45.0 15 0.00033 37.3 2.3 45 123-171 2-53 (669)
184 KOG3579 Predicted E3 ubiquitin 44.8 10 0.00022 34.5 1.0 37 119-159 266-306 (352)
185 PF05961 Chordopox_A13L: Chord 44.7 38 0.00082 24.0 3.6 24 37-60 4-27 (68)
186 PHA03099 epidermal growth fact 44.7 18 0.00039 29.0 2.2 14 47-60 116-129 (139)
187 PLN02189 cellulose synthase 44.2 27 0.00059 37.3 4.0 51 120-170 33-87 (1040)
188 cd00065 FYVE FYVE domain; Zinc 43.5 19 0.00042 23.8 2.0 35 122-156 3-37 (57)
189 PHA02975 hypothetical protein; 42.9 59 0.0013 23.2 4.3 16 40-55 51-66 (69)
190 PRK03814 oxaloacetate decarbox 41.3 58 0.0012 24.2 4.4 21 31-51 13-33 (85)
191 PF04216 FdhE: Protein involve 41.3 5.9 0.00013 35.9 -1.1 45 121-168 172-220 (290)
192 PF10883 DUF2681: Protein of u 41.2 41 0.0009 25.1 3.6 18 43-60 10-27 (87)
193 PF14311 DUF4379: Domain of un 41.2 18 0.00039 24.2 1.5 23 142-165 33-55 (55)
194 COG4736 CcoQ Cbb3-type cytochr 41.0 70 0.0015 22.2 4.4 21 37-57 9-29 (60)
195 PF05568 ASFV_J13L: African sw 40.9 58 0.0013 26.8 4.6 24 37-60 36-59 (189)
196 PF06844 DUF1244: Protein of u 40.9 16 0.00035 25.8 1.3 12 146-157 11-22 (68)
197 PHA02657 hypothetical protein; 40.4 65 0.0014 24.0 4.4 14 9-22 5-18 (95)
198 PF06716 DUF1201: Protein of u 40.1 1E+02 0.0022 20.3 4.8 6 54-59 32-37 (54)
199 PF14914 LRRC37AB_C: LRRC37A/B 40.0 46 0.001 27.4 3.9 17 24-40 113-129 (154)
200 PF09835 DUF2062: Uncharacteri 39.8 52 0.0011 26.6 4.4 21 33-53 120-140 (154)
201 PF04710 Pellino: Pellino; In 39.6 9.7 0.00021 36.2 0.0 55 121-176 328-407 (416)
202 KOG0956 PHD finger protein AF1 38.5 11 0.00025 38.2 0.3 48 122-170 118-182 (900)
203 PHA02692 hypothetical protein; 38.4 86 0.0019 22.4 4.6 15 40-54 53-67 (70)
204 KOG2041 WD40 repeat protein [G 38.2 63 0.0014 33.5 5.3 49 118-170 1128-1185(1189)
205 PF10497 zf-4CXXC_R1: Zinc-fin 38.0 30 0.00066 26.6 2.5 48 120-167 6-69 (105)
206 PF10577 UPF0560: Uncharacteri 36.9 36 0.00078 35.3 3.5 29 31-59 273-301 (807)
207 PRK01844 hypothetical protein; 36.8 97 0.0021 22.3 4.7 16 37-52 9-24 (72)
208 PF00558 Vpu: Vpu protein; In 36.4 53 0.0012 24.2 3.4 12 50-61 27-38 (81)
209 KOG1729 FYVE finger containing 36.1 7.5 0.00016 35.5 -1.3 35 123-158 216-250 (288)
210 PHA02902 putative IMV membrane 35.4 52 0.0011 23.2 3.1 15 95-109 51-65 (70)
211 PF02532 PsbI: Photosystem II 35.2 79 0.0017 19.6 3.5 20 34-53 2-21 (36)
212 PF05393 Hum_adeno_E3A: Human 34.9 62 0.0013 24.3 3.6 12 8-19 13-24 (94)
213 PF06024 DUF912: Nucleopolyhed 34.7 15 0.00032 28.1 0.3 19 32-50 60-78 (101)
214 PF14569 zf-UDP: Zinc-binding 34.6 59 0.0013 23.8 3.4 52 120-171 8-63 (80)
215 PF07649 C1_3: C1-like domain; 34.2 36 0.00078 19.7 1.9 29 123-152 2-30 (30)
216 PLN02436 cellulose synthase A 33.9 49 0.0011 35.6 4.0 50 121-170 36-89 (1094)
217 PF06305 DUF1049: Protein of u 33.9 1E+02 0.0022 21.0 4.6 13 43-55 33-45 (68)
218 PF13314 DUF4083: Domain of un 33.5 1.3E+02 0.0027 20.8 4.6 10 52-61 25-34 (58)
219 PF06809 NPDC1: Neural prolife 33.2 21 0.00046 33.0 1.1 20 38-57 203-222 (341)
220 PF05297 Herpes_LMP1: Herpesvi 33.2 14 0.00031 33.8 0.0 27 27-53 99-125 (381)
221 COG5627 MMS21 DNA repair prote 33.2 22 0.00047 31.6 1.1 46 121-169 189-238 (275)
222 PF02009 Rifin_STEVOR: Rifin/s 32.6 74 0.0016 29.3 4.5 10 51-60 271-280 (299)
223 PHA03049 IMV membrane protein; 32.4 74 0.0016 22.5 3.4 20 38-57 5-24 (68)
224 cd00350 rubredoxin_like Rubred 32.4 21 0.00047 21.3 0.7 20 143-168 7-26 (33)
225 KOG2979 Protein involved in DN 32.1 27 0.00059 31.3 1.6 41 122-165 177-219 (262)
226 KOG4218 Nuclear hormone recept 32.0 14 0.0003 34.6 -0.3 50 119-169 13-77 (475)
227 PF04639 Baculo_E56: Baculovir 31.5 23 0.0005 32.2 1.1 27 24-50 269-295 (305)
228 smart00647 IBR In Between Ring 31.5 24 0.00052 23.6 0.9 19 137-155 40-58 (64)
229 PF06676 DUF1178: Protein of u 31.5 13 0.00027 30.7 -0.6 23 143-170 10-43 (148)
230 PHA03030 hypothetical protein; 31.2 28 0.0006 26.8 1.3 6 50-55 17-22 (122)
231 PF09425 CCT_2: Divergent CCT 31.0 25 0.00054 20.4 0.8 12 251-262 1-12 (27)
232 KOG4185 Predicted E3 ubiquitin 30.8 7.9 0.00017 35.0 -2.1 48 121-168 207-265 (296)
233 PF12768 Rax2: Cortical protei 30.7 34 0.00073 31.1 2.0 36 25-60 222-257 (281)
234 COG3813 Uncharacterized protei 30.6 54 0.0012 23.7 2.6 45 124-171 8-53 (84)
235 PRK02919 oxaloacetate decarbox 30.5 1.3E+02 0.0028 22.2 4.7 23 31-53 12-34 (82)
236 PRK13718 conjugal transfer pro 30.2 1.5E+02 0.0032 21.8 4.8 23 31-53 42-64 (84)
237 PF14584 DUF4446: Protein of u 29.8 86 0.0019 25.8 4.1 27 103-130 80-106 (151)
238 PF09723 Zn-ribbon_8: Zinc rib 29.7 12 0.00026 23.8 -0.8 26 141-167 9-34 (42)
239 PF14316 DUF4381: Domain of un 29.4 60 0.0013 26.2 3.1 9 17-25 7-15 (146)
240 PRK10747 putative protoheme IX 29.0 89 0.0019 29.4 4.7 12 26-37 35-46 (398)
241 PF04423 Rad50_zn_hook: Rad50 29.0 19 0.00041 24.0 0.1 11 161-171 22-32 (54)
242 PF02318 FYVE_2: FYVE-type zin 29.0 38 0.00082 26.4 1.8 47 120-167 53-102 (118)
243 KOG4550 Predicted membrane pro 28.8 65 0.0014 31.3 3.6 31 26-56 554-584 (606)
244 PF04834 Adeno_E3_14_5: Early 27.9 64 0.0014 24.6 2.7 19 29-47 22-40 (97)
245 TIGR02736 cbb3_Q_epsi cytochro 27.8 89 0.0019 21.4 3.1 10 45-54 10-19 (56)
246 PRK04989 psbM photosystem II r 27.6 95 0.0021 19.1 2.9 16 38-53 11-26 (35)
247 PF11157 DUF2937: Protein of u 27.4 1.1E+02 0.0024 25.5 4.4 39 21-59 124-162 (167)
248 PF11241 DUF3043: Protein of u 27.1 1.2E+02 0.0025 25.7 4.4 26 20-45 69-94 (170)
249 TIGR00540 hemY_coli hemY prote 27.0 85 0.0018 29.6 4.1 7 26-32 35-41 (409)
250 PLN02638 cellulose synthase A 26.8 78 0.0017 34.2 4.1 50 121-170 17-70 (1079)
251 PRK03564 formate dehydrogenase 26.8 35 0.00075 31.5 1.4 47 120-167 186-234 (309)
252 PF07191 zinc-ribbons_6: zinc- 26.4 24 0.00053 25.3 0.2 40 122-170 2-41 (70)
253 PF04277 OAD_gamma: Oxaloaceta 26.4 1.5E+02 0.0033 20.9 4.5 17 36-52 8-24 (79)
254 COG5151 SSL1 RNA polymerase II 26.4 66 0.0014 29.8 3.0 65 103-167 343-418 (421)
255 PF11884 DUF3404: Domain of un 26.2 1.3E+02 0.0028 27.2 4.8 13 32-44 230-242 (262)
256 PF13268 DUF4059: Protein of u 26.2 2E+02 0.0042 20.7 4.8 27 33-59 9-35 (72)
257 COG2268 Uncharacterized protei 26.0 41 0.00089 33.5 1.8 15 46-60 24-38 (548)
258 PRK05978 hypothetical protein; 25.9 50 0.0011 27.2 2.0 28 141-173 37-66 (148)
259 PF05605 zf-Di19: Drought indu 25.8 25 0.00055 23.3 0.2 37 121-168 2-40 (54)
260 PRK12495 hypothetical protein; 25.8 2.4E+02 0.0052 24.8 6.2 12 160-171 59-70 (226)
261 PLN02400 cellulose synthase 25.7 72 0.0016 34.4 3.6 51 120-170 35-89 (1085)
262 PF15069 FAM163: FAM163 family 25.6 37 0.00079 27.8 1.1 7 159-165 91-97 (143)
263 COG3763 Uncharacterized protei 25.6 2.1E+02 0.0046 20.5 4.8 13 37-49 9-21 (71)
264 PF05454 DAG1: Dystroglycan (D 25.5 23 0.00051 32.4 0.0 8 123-130 209-216 (290)
265 PF06422 PDR_CDR: CDR ABC tran 25.4 96 0.0021 23.6 3.4 24 26-49 43-66 (103)
266 COG4847 Uncharacterized protei 25.1 58 0.0013 24.8 2.1 32 122-155 7-38 (103)
267 PF01485 IBR: IBR domain; Int 24.5 6.7 0.00015 26.4 -2.9 34 122-155 19-58 (64)
268 PF13832 zf-HC5HC2H_2: PHD-zin 24.5 45 0.00097 25.3 1.4 34 120-154 54-87 (110)
269 CHL00080 psbM photosystem II p 24.2 1.1E+02 0.0024 18.7 2.8 16 38-53 11-26 (34)
270 PF05151 PsbM: Photosystem II 24.1 1.5E+02 0.0033 17.8 3.3 7 48-54 21-27 (31)
271 PF09435 DUF2015: Fungal prote 23.9 3.6E+02 0.0077 21.7 6.4 11 92-102 76-86 (128)
272 COG3087 FtsN Cell division pro 23.9 1.2E+02 0.0027 27.3 4.2 8 2-9 1-8 (264)
273 KOG0956 PHD finger protein AF1 23.9 51 0.0011 33.8 2.0 27 139-166 43-69 (900)
274 PF06143 Baculo_11_kDa: Baculo 23.5 1.4E+02 0.0031 22.1 3.8 31 12-45 14-44 (84)
275 KOG3799 Rab3 effector RIM1 and 23.5 45 0.00097 27.1 1.3 23 117-147 61-84 (169)
276 PF05399 EVI2A: Ectropic viral 23.4 1.4E+02 0.0031 26.1 4.3 11 33-43 130-140 (227)
277 PRK06287 cobalt transport prot 23.4 1.5E+02 0.0033 22.8 4.2 7 24-30 67-73 (107)
278 PLN02915 cellulose synthase A 23.4 1.2E+02 0.0026 32.6 4.7 51 120-170 14-68 (1044)
279 COG1622 CyoA Heme/copper-type 23.2 1.5E+02 0.0032 26.5 4.6 9 33-41 35-43 (247)
280 PF12794 MscS_TM: Mechanosensi 22.8 2.7E+02 0.0058 25.9 6.5 12 52-63 246-257 (340)
281 PF10083 DUF2321: Uncharacteri 22.8 37 0.0008 28.2 0.7 43 126-171 9-51 (158)
282 PRK13415 flagella biosynthesis 22.6 2.4E+02 0.0051 24.8 5.6 11 51-61 83-93 (219)
283 KOG4430 Topoisomerase I-bindin 22.4 27 0.00059 34.7 -0.2 52 119-170 258-309 (553)
284 PF10215 Ost4: Oligosaccaryltr 22.2 2E+02 0.0044 17.7 3.8 19 34-52 9-27 (35)
285 COG3492 Uncharacterized protei 22.1 42 0.00092 25.3 0.8 12 146-157 42-53 (104)
286 PTZ00473 Plasmodium Vir superf 22.1 81 0.0018 30.2 2.8 31 20-50 257-287 (420)
287 KOG2071 mRNA cleavage and poly 22.1 50 0.0011 33.1 1.5 36 119-155 511-556 (579)
288 PF14991 MLANA: Protein melan- 21.9 30 0.00065 27.2 0.0 12 51-62 40-51 (118)
289 PF13771 zf-HC5HC2H: PHD-like 21.7 50 0.0011 23.9 1.2 33 121-154 36-68 (90)
290 PF03554 Herpes_UL73: UL73 vir 21.6 2E+02 0.0043 21.3 4.3 36 24-60 39-74 (82)
291 TIGR03038 PS_II_psbM photosyst 21.5 1.5E+02 0.0032 18.0 2.9 15 39-53 12-26 (33)
292 PF10954 DUF2755: Protein of u 21.5 1.9E+02 0.0041 21.8 4.1 13 17-29 56-68 (100)
293 PF09943 DUF2175: Uncharacteri 21.2 81 0.0017 24.3 2.2 32 123-156 4-35 (101)
294 PF10873 DUF2668: Protein of u 20.9 77 0.0017 26.0 2.1 28 25-53 60-87 (155)
295 PF15168 TRIQK: Triple QxxK/R 20.6 1.7E+02 0.0037 21.3 3.6 10 48-57 61-70 (79)
296 COG4741 Predicted secreted end 20.5 1.4E+02 0.003 24.9 3.5 18 98-115 91-108 (175)
297 KOG4323 Polycomb-like PHD Zn-f 20.2 67 0.0015 31.3 2.0 53 117-169 164-225 (464)
298 PRK14094 psbM photosystem II r 20.1 76 0.0017 20.9 1.6 16 38-53 11-26 (50)
299 PF04906 Tweety: Tweety; Inte 20.1 1.1E+02 0.0023 29.3 3.4 15 48-62 35-49 (406)
300 PTZ00046 rifin; Provisional 20.0 1.7E+02 0.0036 27.7 4.4 15 48-62 327-341 (358)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.7e-20 Score=168.49 Aligned_cols=76 Identities=33% Similarity=0.845 Sum_probs=66.2
Q ss_pred CCCCHHHHhhCCceecCCCCCCCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCC-cccccccccCCC
Q 024682 96 QALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSN-CPLCRAPVQLDI 173 (264)
Q Consensus 96 ~gl~~~~i~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~-CP~Cr~~v~~~~ 173 (264)
.++.+..++++|..+|+...+.... ..|+||||+|..++++++|| |+|.||..||++||..+.+ ||+||+++....
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 4568899999999999998554444 79999999999999999999 9999999999999987755 999999876543
No 2
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.3e-16 Score=143.22 Aligned_cols=125 Identities=21% Similarity=0.541 Sum_probs=76.5
Q ss_pred CCCCCccccccccccCCC----------ceeEeCCCCccccHHHHHHHHcCCCCcccccccccCCCccCCCccccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNE----------NGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVS 187 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~----------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~~~~~~~~~~~~~~~ 187 (264)
..++..|.||++++-.++ ..+.+| |||.||.+|++.|++++++||+||.++.-+.....+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~~~~~~--------- 353 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQSSPTP--------- 353 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccccCCCCc---------
Confidence 456788999999954332 446788 999999999999999999999999996533222111
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCCCCCCccccCCcccCCCCCCC-CCCCCCCccccCCCCCch
Q 024682 188 VIEPTERDLGVVHQMGCSSSSSSSSSLPQLESVSVEIPRARENFRGLD-DMGLSLTNERNGFKSPGN 253 (264)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~ssss~s~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~sp~~ 253 (264)
..+..++.....++....++......|...+.+...|.+...+++++ +...++.+++|+..||.+
T Consensus 354 -~s~~v~nt~I~tq~~~~dnt~~~t~~~g~~n~~~~~~~~~st~~~vp~~n~~~~a~~t~~~ss~~p 419 (491)
T COG5243 354 -ASPNVRNTQIATQVPNPDNTPTTTAVPGITNSSNQGDPQASTFNGVPNANSSGFAAHTQDLSSVIP 419 (491)
T ss_pred -CCcccccceecccCCCCCCCCccccCcccccccccCCCccCCCCCCcCCCchhhhhhccccCCCCC
Confidence 11222223333333333333334444444444555566666666552 334455566677776654
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.50 E-value=7.9e-15 Score=96.17 Aligned_cols=44 Identities=50% Similarity=1.215 Sum_probs=40.2
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 166 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr 166 (264)
++|+||+++|..++.+..++ |||.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999999 999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.34 E-value=8.9e-13 Score=115.86 Aligned_cols=76 Identities=30% Similarity=0.707 Sum_probs=59.1
Q ss_pred CCCCCHHHHhhCCceecCCCC-CCCCCCCccccccccccCCC----ceeEeCCCCccccHHHHHHHHcCCCCcccccccc
Q 024682 95 HQALDLSILKRIPAFVYSPNI-EDPKEPLDCAVCLSEFEDNE----NGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169 (264)
Q Consensus 95 ~~gl~~~~i~~lp~~~~~~~~-~~~~~~~~C~ICl~~~~~~~----~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 169 (264)
.++..+.+++.+|.+...... ....++.+|+||++.+.++. ...+++.|+|.||..||..|+..+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 355688899999988765431 12345689999999987653 1345666999999999999999999999999987
Q ss_pred c
Q 024682 170 Q 170 (264)
Q Consensus 170 ~ 170 (264)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.27 E-value=4.4e-12 Score=92.22 Aligned_cols=45 Identities=40% Similarity=0.969 Sum_probs=35.4
Q ss_pred CCccccccccccCC----------CceeEeCCCCccccHHHHHHHHcCCCCccccc
Q 024682 121 PLDCAVCLSEFEDN----------ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 166 (264)
Q Consensus 121 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr 166 (264)
++.|+||++.|.++ -.+...+ |||.||..||..|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44599999999433 2333444 999999999999999999999997
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.1e-12 Score=113.88 Aligned_cols=52 Identities=42% Similarity=1.092 Sum_probs=46.2
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~ 171 (264)
..+.+|+||++.|..++.++++| |+|.||..|+++|+.. +..||+||..+.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 44589999999999999999999 9999999999999985 4569999998754
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-10 Score=100.10 Aligned_cols=51 Identities=31% Similarity=0.796 Sum_probs=43.9
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDI 173 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 173 (264)
.....|.+||+...++ ..+| |||+||+.||..|......||+||..+.+..
T Consensus 237 ~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 4457899999998777 3566 9999999999999999999999999987653
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.96 E-value=4.7e-10 Score=95.20 Aligned_cols=49 Identities=33% Similarity=0.824 Sum_probs=40.0
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----------------CCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----------------HSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----------------~~~CP~Cr~~v~~ 171 (264)
.+..+|+||++.+.++ .+++ |||.||+.||..|+.. ...||+||..+..
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4568899999999877 4444 9999999999999842 2469999999864
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.95 E-value=5.9e-10 Score=74.90 Aligned_cols=46 Identities=30% Similarity=0.934 Sum_probs=38.6
Q ss_pred CCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
+..|.||++...+ ...+| |||. |+..|+..|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998544 56777 9999 999999999999999999999874
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.1e-10 Score=92.21 Aligned_cols=53 Identities=28% Similarity=0.694 Sum_probs=43.5
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..+....|+|||+.|... +.+..+|||+||..||+..++....||+|++.+..
T Consensus 127 ~~~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 334557899999998665 33556799999999999999999999999987653
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.2e-10 Score=96.22 Aligned_cols=51 Identities=35% Similarity=0.882 Sum_probs=41.5
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC---CCcccccccccCC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH---SNCPLCRAPVQLD 172 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~v~~~ 172 (264)
.....+|.|||+.-+++ +++-|||.||+.||-+|++.+ +.||+||..|..+
T Consensus 44 ~~~~FdCNICLd~akdP----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCC----EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 34568899999998887 444499999999999999653 3589999998644
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.1e-09 Score=70.42 Aligned_cols=44 Identities=48% Similarity=1.221 Sum_probs=35.5
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPV 169 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v 169 (264)
+|+||++.+.. ..... .|||.||..|+..|+.. +..||.||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~-~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLL-PCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEec-CCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999833 33444 49999999999999987 67799999754
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.88 E-value=1.1e-09 Score=69.85 Aligned_cols=39 Identities=38% Similarity=1.083 Sum_probs=32.0
Q ss_pred cccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLC 165 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C 165 (264)
|+||++.+.++ +..++ |||.||..|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998774 34555 99999999999999888889998
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.6e-09 Score=103.26 Aligned_cols=50 Identities=36% Similarity=0.961 Sum_probs=44.5
Q ss_pred CCCccccccccccCCCc--eeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNEN--GRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
.+..|+||++++..+.+ .++++ |+|.||..|+..|++++++||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 46789999999988655 67888 9999999999999999999999999554
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.85 E-value=2.2e-09 Score=79.46 Aligned_cols=51 Identities=33% Similarity=0.845 Sum_probs=39.0
Q ss_pred CCCccccccccccCC--------C-ceeEeCCCCccccHHHHHHHHcC---CCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDN--------E-NGRVLPKCRHVFHVDCIDMWFQS---HSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~--------~-~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~ 170 (264)
+++.|.||...|... + -..+...|+|.||..||.+|+.+ +.+||+||+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 477899999998621 1 12234459999999999999975 457999999765
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.84 E-value=1.6e-09 Score=93.16 Aligned_cols=53 Identities=26% Similarity=0.833 Sum_probs=40.4
Q ss_pred CCCCCccccccccccCC-----CceeEeCCCCccccHHHHHHHHcCC------CCccccccccc
Q 024682 118 PKEPLDCAVCLSEFEDN-----ENGRVLPKCRHVFHVDCIDMWFQSH------SNCPLCRAPVQ 170 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~fh~~Ci~~wl~~~------~~CP~Cr~~v~ 170 (264)
..++.+|+||++..-++ ..-.+|++|+|.||..||..|...+ .+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34568899999986432 1234677799999999999999643 35999999775
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.74 E-value=6.2e-09 Score=67.52 Aligned_cols=38 Identities=37% Similarity=0.991 Sum_probs=29.0
Q ss_pred cccccccccCCCceeEeCCCCccccHHHHHHHHcCC----CCcccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH----SNCPLC 165 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~C 165 (264)
|+||++.|.++ ..++ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 4566 99999999999999653 359987
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.72 E-value=1e-08 Score=67.12 Aligned_cols=44 Identities=25% Similarity=0.855 Sum_probs=36.4
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
.|.||++.|......++++ |||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999995445556666 9999999999999866778999984
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.67 E-value=1.1e-08 Score=65.59 Aligned_cols=39 Identities=46% Similarity=1.217 Sum_probs=32.7
Q ss_pred cccccccccCCCceeEeCCCCccccHHHHHHHHc--CCCCcccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ--SHSNCPLC 165 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~--~~~~CP~C 165 (264)
|+||++.+..+. .+++ |||.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987772 3555 999999999999998 45569988
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=2.3e-08 Score=94.08 Aligned_cols=52 Identities=31% Similarity=0.646 Sum_probs=44.0
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
.......|+||++.|..+ .+++ |||.||..||..|+.....||+||..+...
T Consensus 22 ~Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 445668999999999887 3455 999999999999998888899999988643
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=3.3e-08 Score=61.23 Aligned_cols=38 Identities=42% Similarity=1.223 Sum_probs=31.6
Q ss_pred cccccccccCCCceeEeCCCCccccHHHHHHHHc-CCCCcccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-SHSNCPLC 165 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~C 165 (264)
|+||++.. .....++ |+|.||..|++.|+. .+..||.|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 3446677 999999999999998 56679987
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.59 E-value=4.7e-08 Score=68.26 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=40.1
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..|+||++.+.++ .+++ |||.|+..||..|+..+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999887 4455 99999999999999888899999987743
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.58 E-value=2.7e-08 Score=72.09 Aligned_cols=51 Identities=31% Similarity=0.647 Sum_probs=38.3
Q ss_pred CCccccccccccC-----------CCcee-EeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFED-----------NENGR-VLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~-----------~~~~~-~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
.+.|+||...|.. +++.. .-..|+|.||..||..||..+..||+||+.++.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 4668888777642 22222 222399999999999999999999999998764
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.7e-08 Score=86.16 Aligned_cols=55 Identities=35% Similarity=0.687 Sum_probs=44.6
Q ss_pred CCCCCccccccccccCCC-------ceeEeCCCCccccHHHHHHHH--cCCCCcccccccccCCC
Q 024682 118 PKEPLDCAVCLSEFEDNE-------NGRVLPKCRHVFHVDCIDMWF--QSHSNCPLCRAPVQLDI 173 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~fh~~Ci~~wl--~~~~~CP~Cr~~v~~~~ 173 (264)
..++..|+||-..+.... +...|. |+|+||..||+-|. .++++||.|+..|....
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 456778999998876554 566777 99999999999997 56778999999886543
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8.6e-08 Score=68.95 Aligned_cols=51 Identities=31% Similarity=0.787 Sum_probs=37.2
Q ss_pred CCCccccccccccCC--------C-ceeEeCCCCccccHHHHHHHHcC---CCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDN--------E-NGRVLPKCRHVFHVDCIDMWFQS---HSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~--------~-~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~ 170 (264)
.++.|-||.-.|... + -..++..|.|.||..||.+|+.. +..||+||+.+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 445899999988532 1 11122349999999999999965 446999999875
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.3e-07 Score=81.72 Aligned_cols=50 Identities=36% Similarity=0.822 Sum_probs=41.0
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHH-HHcCCCC-cccccccccCCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM-WFQSHSN-CPLCRAPVQLDI 173 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~-wl~~~~~-CP~Cr~~v~~~~ 173 (264)
.+..|+||++....+ ..++ |||+||..||.. |-.++.- ||+||+.+.+..
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 467899999997666 4566 999999999999 8766665 999999887653
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.1e-07 Score=84.55 Aligned_cols=52 Identities=29% Similarity=0.907 Sum_probs=38.7
Q ss_pred CCCCccccccccccCCC-------------ceeEeCCCCccccHHHHHHHHcCCC-Cccccccccc
Q 024682 119 KEPLDCAVCLSEFEDNE-------------NGRVLPKCRHVFHVDCIDMWFQSHS-NCPLCRAPVQ 170 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~-------------~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~ 170 (264)
.....|+||+..+.--. .-.++++|.|+||..|+..|...-+ .||+||+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 44568999999864221 0123344999999999999998555 8999999874
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.25 E-value=7.3e-07 Score=59.72 Aligned_cols=42 Identities=29% Similarity=0.888 Sum_probs=32.8
Q ss_pred ccccccccccCCCceeEeCCCC-----ccccHHHHHHHHcC--CCCccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCR-----HVFHVDCIDMWFQS--HSNCPLCR 166 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr 166 (264)
.|.||++ ..+++...+.| |. |.+|..|+..|+.. ..+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 44455566778 85 88999999999954 44799995
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.24 E-value=3.5e-07 Score=83.07 Aligned_cols=51 Identities=25% Similarity=0.653 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDI 173 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 173 (264)
..-..|.||.+.|..+ ++.+|+|.||.-||...|..+..||.|+.++....
T Consensus 21 D~lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHHhHHHHHhcCc----eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 3456799999999998 55459999999999999999999999999886543
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6e-07 Score=85.58 Aligned_cols=48 Identities=29% Similarity=0.784 Sum_probs=38.9
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-----CCCcccccccccCC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-----HSNCPLCRAPVQLD 172 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~v~~~ 172 (264)
+..|+|||+....+ .+..|||+||..||..++.. ...||+|+..|...
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 67899999997766 45559999999999887643 34699999988764
No 31
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.17 E-value=2.9e-07 Score=92.62 Aligned_cols=54 Identities=33% Similarity=0.828 Sum_probs=39.4
Q ss_pred CCCCCCccccccccccCCC---ceeEeCCCCccccHHHHHHHHcC--CCCccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNE---NGRVLPKCRHVFHVDCIDMWFQS--HSNCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~ 170 (264)
......+|+||...+..-+ .-+..+.|.|.||..|+-+|+.+ +.+||+||..+.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456789999998875111 11233459999999999999975 567999997653
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.15 E-value=1.5e-06 Score=63.00 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=38.0
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~ 172 (264)
+...|+||.+.|.++ .+++ |||.|...||..|+.. +.+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 457899999999998 5566 9999999999999988 88899999887643
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.14 E-value=1e-06 Score=78.57 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=41.7
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
.-..|.||-+.|..+ .++.|||.||.-||...|..+..||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 346799999999888 55559999999999999999999999999875
No 34
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.09 E-value=2.4e-06 Score=55.59 Aligned_cols=33 Identities=39% Similarity=0.883 Sum_probs=21.1
Q ss_pred cccccccccCCC-ceeEeCCCCccccHHHHHHHHcC
Q 024682 124 CAVCLSEFEDNE-NGRVLPKCRHVFHVDCIDMWFQS 158 (264)
Q Consensus 124 C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~ 158 (264)
|+||.+ |...+ ...+|+ |||.|+.+||..|+..
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhc
Confidence 899999 76644 447788 9999999999999974
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.4e-06 Score=76.89 Aligned_cols=47 Identities=34% Similarity=0.848 Sum_probs=40.2
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
...+...|+||++.|..+ .+++ |+|.||..|+..++.....||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 345678899999999999 6777 9999999999998885557999994
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.1e-06 Score=65.30 Aligned_cols=52 Identities=29% Similarity=0.657 Sum_probs=38.5
Q ss_pred CCCCccccccccccC------------CCcee-EeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 119 KEPLDCAVCLSEFED------------NENGR-VLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~------------~~~~~-~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...+.|+||...+.+ .++.. .-..|+|.||..||..|++++..||+|.++..
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 456789999876521 11222 22349999999999999999999999988653
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.03 E-value=7.2e-07 Score=64.25 Aligned_cols=50 Identities=36% Similarity=0.903 Sum_probs=23.7
Q ss_pred CCccccccccccCCCce--eEe--CCCCccccHHHHHHHHcC----C-------CCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENG--RVL--PKCRHVFHVDCIDMWFQS----H-------SNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~--~~l--p~C~H~fh~~Ci~~wl~~----~-------~~CP~Cr~~v~ 170 (264)
..+|.||++.+.+.+.+ .+- +.|++.||..|+.+||.. + .+||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46799999987633211 222 259999999999999942 1 14999999875
No 38
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=4.4e-06 Score=75.97 Aligned_cols=51 Identities=24% Similarity=0.662 Sum_probs=37.0
Q ss_pred CCcccccccc-ccCCCc-eeEeCCCCccccHHHHHHHH-cCCCCcccccccccCC
Q 024682 121 PLDCAVCLSE-FEDNEN-GRVLPKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQLD 172 (264)
Q Consensus 121 ~~~C~ICl~~-~~~~~~-~~~lp~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~v~~~ 172 (264)
+..|++|... |..++. +.+.+ |||.||..|++..+ .....||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4579999996 444432 22334 99999999999966 4455799999877543
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.7e-06 Score=77.16 Aligned_cols=49 Identities=37% Similarity=0.872 Sum_probs=41.2
Q ss_pred CCCCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
++..+|.||+.+- ....+|| |.|. .|..|.+..--++..||+||+++..
T Consensus 288 ~~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 4467999999994 4557899 9997 9999999887778899999998863
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.98 E-value=3.2e-06 Score=79.41 Aligned_cols=51 Identities=33% Similarity=0.824 Sum_probs=39.3
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..+-.+|+|||+.+...-...+..-|.|.||..|+..|. ..+||+||.--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 456689999999987654333333499999999999995 468999998554
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.7e-06 Score=77.04 Aligned_cols=48 Identities=25% Similarity=0.911 Sum_probs=35.3
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcC---CCCcccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS---HSNCPLCRAPV 169 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v 169 (264)
.+|.||-+-+...+.+.-.-.|||+||..|+..||.. +.+||+|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4799995555444444444449999999999999965 35799999444
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.3e-06 Score=56.46 Aligned_cols=47 Identities=32% Similarity=0.681 Sum_probs=35.9
Q ss_pred CCccccccccccCCCceeEeCCCCcc-ccHHHHHHHH-cCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWF-QSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl-~~~~~CP~Cr~~v~~ 171 (264)
+.+|.||++.-.+. ++-.|||. .|+.|-.+.+ ..+..||+||+++..
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 37899999985544 34349996 8999976644 478899999998753
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1e-05 Score=80.60 Aligned_cols=48 Identities=35% Similarity=0.891 Sum_probs=39.9
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-CCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-SHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~ 171 (264)
+-..|++|-..+.+. ++++|+|+||..|+..-+. ++..||.|-..|..
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 446799999887776 6667999999999999884 56779999998864
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.1e-05 Score=72.90 Aligned_cols=54 Identities=28% Similarity=0.867 Sum_probs=41.1
Q ss_pred CCCCccccccccccCCC----ceeEeCCCCccccHHHHHHHH--cC-----CCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNE----NGRVLPKCRHVFHVDCIDMWF--QS-----HSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~----~~~~lp~C~H~fh~~Ci~~wl--~~-----~~~CP~Cr~~v~~~ 172 (264)
..+.+|.||++...+.. ...++|+|.|.||..||+.|- .+ .+.||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 45678999999876553 123457899999999999998 33 46799999876543
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3.8e-05 Score=71.61 Aligned_cols=51 Identities=27% Similarity=0.780 Sum_probs=39.7
Q ss_pred CCCccccccccccCC-CceeEeCCCCccccHHHHHHHHcC--CCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDN-ENGRVLPKCRHVFHVDCIDMWFQS--HSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~ 170 (264)
....|+|||+.|..+ +...+.+.|||.|..+||+.|+.+ ...||.|...-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 356899999999765 444455679999999999999953 335999987653
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.55 E-value=1.6e-05 Score=79.05 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=39.9
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..|++|+..+.+.......+ |+|.||..||..|-..-.+||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 45778877776665444555 99999999999999999999999998753
No 47
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.54 E-value=3.2e-05 Score=71.88 Aligned_cols=47 Identities=26% Similarity=0.822 Sum_probs=38.8
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcC--CCCcccccccccCC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS--HSNCPLCRAPVQLD 172 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~~~ 172 (264)
.-|-||-+. ...+++.| |||..|..|+..|-.. ..+||.||..+...
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 359999987 45678888 9999999999999744 46899999988643
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.50 E-value=2.3e-05 Score=54.91 Aligned_cols=45 Identities=31% Similarity=0.828 Sum_probs=23.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
-..|.+|.+.+.++ ..+..|.|+||..||..-+. ..||+|+.+..
T Consensus 7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 45799999999888 33556999999999988554 35999998764
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=1.4e-05 Score=73.14 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=40.4
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-CCCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-SHSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~ 171 (264)
..+..|+|||+.++.. ...+.|.|.||.+||..-+. .+..||.||+.+..
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 4567899999998765 34556999999999988885 46679999998753
No 50
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=5.6e-05 Score=68.02 Aligned_cols=48 Identities=25% Similarity=0.572 Sum_probs=38.2
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccCC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQLD 172 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~ 172 (264)
..+|+||+..-..+ ..++ |+|.||+.||+--... ..+|++||.++...
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 46799999986555 4566 9999999999876544 55699999999643
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.45 E-value=6.2e-05 Score=67.67 Aligned_cols=53 Identities=25% Similarity=0.719 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-----------------------CCCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-----------------------SHSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----------------------~~~~CP~Cr~~v~~~ 172 (264)
.....|.|||.-|.+++...+.+ |-|.||..|+..+|. ....||+||..+...
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 34568999999999999888888 999999999977653 123599999988654
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=4.7e-05 Score=65.90 Aligned_cols=59 Identities=25% Similarity=0.657 Sum_probs=47.8
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC--------CCCcccccccccCCCccCCCc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS--------HSNCPLCRAPVQLDITLVHPL 179 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~v~~~~~~~~~~ 179 (264)
..+..|..|-..+..++.+++. |-|.||++|+++|-.. ...||.|..++++......|+
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPv 114 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPV 114 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchh
Confidence 3445699999999999887765 9999999999999742 346999999999887666553
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.14 E-value=0.00026 Score=67.14 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=44.0
Q ss_pred CCCCCccccccccccCCCceeEe-CCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVL-PKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~l-p~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
..++..|++|...+.++ .. ..|||.||..|+..|+..+..||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p----~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP----VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCC----CCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 56778999999999888 44 25999999999999999999999999887644
No 54
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.03 E-value=0.00027 Score=56.79 Aligned_cols=43 Identities=19% Similarity=0.602 Sum_probs=33.6
Q ss_pred CCccccccccccCCCceeEeCCCC------ccccHHHHHHHHcCCCCccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCR------HVFHVDCIDMWFQSHSNCPL 164 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~------H~fh~~Ci~~wl~~~~~CP~ 164 (264)
..+|+||++.+.+.+++..++ || |.||.+|+.+|-..+..=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 578999999998867788888 76 88999999999533333343
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.97 E-value=0.00043 Score=47.77 Aligned_cols=43 Identities=33% Similarity=0.647 Sum_probs=27.8
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC--CCCccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS--HSNCPL 164 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~ 164 (264)
.-...|+|.+..|++| + ....|||.|-...|..|+.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V-~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--V-KSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--E-EESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--c-CcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457899999999888 3 33359999999999999943 345998
No 56
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0041 Score=56.81 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=38.8
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 169 (264)
..+...|+||+...+++- ++.--|-+||+.||.+.+.++..||+--.+.
T Consensus 297 ~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345578999999988773 3332689999999999999999999865443
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.89 E-value=0.00068 Score=71.57 Aligned_cols=53 Identities=23% Similarity=0.645 Sum_probs=41.0
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC----------CCcccccccccC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH----------SNCPLCRAPVQL 171 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----------~~CP~Cr~~v~~ 171 (264)
...++.|.||+.+--.....+.|. |+|+||.+|...-|+++ -.||+|+.++..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345678999999876666677787 99999999987766432 259999998853
No 58
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00068 Score=64.19 Aligned_cols=49 Identities=31% Similarity=0.807 Sum_probs=41.7
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..+.+|.||...+..+ ..+| |||.||..||+.-+....-||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 5678999999999888 4556 99999999999987767779999998863
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.64 E-value=0.00063 Score=63.32 Aligned_cols=46 Identities=33% Similarity=0.843 Sum_probs=37.4
Q ss_pred CCccccccccccCC-CceeEeCCCCccccHHHHHHHHcCC--CCcccccc
Q 024682 121 PLDCAVCLSEFEDN-ENGRVLPKCRHVFHVDCIDMWFQSH--SNCPLCRA 167 (264)
Q Consensus 121 ~~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~ 167 (264)
+..|..|-+.+... +.+..|| |.|+||..|+...+.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 46799999988543 4666788 99999999999999654 46999994
No 60
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0031 Score=56.26 Aligned_cols=51 Identities=27% Similarity=0.518 Sum_probs=38.6
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC--CCCccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS--HSNCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~ 170 (264)
....+.+|++|-+.-..| .+..+|+|+||+-||..-+.. ..+||.|-.++.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345678999999986555 233349999999999886654 468999977664
No 61
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.001 Score=54.94 Aligned_cols=29 Identities=28% Similarity=0.775 Sum_probs=26.6
Q ss_pred CCCccccccccccCCCceeEeCCCCccccH
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHV 149 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~ 149 (264)
+.-||.||||++..++.+.+|| |-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 4468999999999999999999 9999996
No 62
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.36 E-value=0.0035 Score=51.79 Aligned_cols=48 Identities=21% Similarity=0.684 Sum_probs=35.1
Q ss_pred CCCCCccccccccccCCCceeEeCCCCc-----cccHHHHHHHHcCC--CCccccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRH-----VFHVDCIDMWFQSH--SNCPLCRAPVQ 170 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H-----~fh~~Ci~~wl~~~--~~CP~Cr~~v~ 170 (264)
...+..|-||.++... . ..| |.. ..|.+|+..|+..+ ..|++|+.+..
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4456789999988432 1 345 653 56999999999653 45999999875
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.35 E-value=0.0014 Score=55.86 Aligned_cols=46 Identities=24% Similarity=0.594 Sum_probs=39.4
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..|.||-.+|..+ +...|||.||..|.-.-++....|-+|-+....
T Consensus 197 F~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 4799999999998 555699999999998888888899999876543
No 64
>PHA02862 5L protein; Provisional
Probab=96.30 E-value=0.0028 Score=51.50 Aligned_cols=45 Identities=22% Similarity=0.685 Sum_probs=34.0
Q ss_pred CCccccccccccCCCceeEeCCCC-----ccccHHHHHHHHcC--CCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCR-----HVFHVDCIDMWFQS--HSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr~~v~ 170 (264)
+..|-||+++-.+. .-| |. ...|..|+..|++. +..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35799999985333 355 65 46999999999964 446999999875
No 65
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.22 E-value=0.0013 Score=60.16 Aligned_cols=53 Identities=21% Similarity=0.590 Sum_probs=43.3
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
+......|.+|-..|.+.- ..+.|-|.||..||...+....+||.|...+...
T Consensus 11 ~~n~~itC~LC~GYliDAT---TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDAT---TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred hcccceehhhccceeecch---hHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 3455678999999998773 2334999999999999999999999999877644
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.20 E-value=0.002 Score=62.20 Aligned_cols=52 Identities=29% Similarity=0.744 Sum_probs=39.9
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-----CCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-----HSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~v~~~ 172 (264)
+..+..+|-+|-+.-++. +...|.|.||..||..++.. +-+||.|...+..+
T Consensus 532 enk~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 345667899999986665 44459999999999988743 56799998876543
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.13 E-value=0.0042 Score=57.19 Aligned_cols=69 Identities=22% Similarity=0.455 Sum_probs=52.9
Q ss_pred CCCHHHHhhCCceecCCCCCCCCCCCccccccccccCCCceeEeCCCCccccHHHHHH--HHcCCCCcccccccc
Q 024682 97 ALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM--WFQSHSNCPLCRAPV 169 (264)
Q Consensus 97 gl~~~~i~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~--wl~~~~~CP~Cr~~v 169 (264)
...+..+-.-|+.+....+++.+++..|.||.+... ...++| |+|..|..|... .|...+.||+||...
T Consensus 37 kqkKNnlsaEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 37 KQKKNNLSAEPNLTTSSADDTDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred hccccccccCCccccccccccccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 344455556678877787778888899999998853 345778 999999999754 456678999999865
No 68
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.006 Score=56.29 Aligned_cols=50 Identities=24% Similarity=0.495 Sum_probs=42.5
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..++..|+||... +......| |+|.=|+.||..-+.+.+.|=.|+..+..
T Consensus 419 ~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3677889999876 54555677 99999999999999999999999998864
No 69
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0024 Score=57.57 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=40.0
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..|-||...|..+ +...|+|.||..|-..=++....|.+|.+.+..
T Consensus 242 f~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc----hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 4599999999999 666699999999998888888899999887753
No 70
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0023 Score=59.07 Aligned_cols=46 Identities=35% Similarity=0.749 Sum_probs=32.0
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
.....|.||+++..+ ...+| |||.-| |..--.+ ...||+||+.+..
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~-l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKH-LPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHHhh-CCCCchhHHHHHH
Confidence 345679999999554 56788 999855 5433222 3459999998753
No 71
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0022 Score=57.70 Aligned_cols=43 Identities=26% Similarity=0.635 Sum_probs=34.3
Q ss_pred CCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..-|+||++. +.....|+ |||. -|.+|.... ..||+||+.+..
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHHH
Confidence 4679999998 66678898 9995 788997543 479999997753
No 72
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.61 E-value=0.0059 Score=46.62 Aligned_cols=33 Identities=36% Similarity=0.753 Sum_probs=26.0
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCID 153 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~ 153 (264)
.+...|++|-..+.. ....+-| |||.||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 345679999999977 3455566 99999999974
No 73
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.55 E-value=0.0084 Score=39.61 Aligned_cols=40 Identities=33% Similarity=1.013 Sum_probs=26.5
Q ss_pred cccccccccCCCceeEeCCCC-----ccccHHHHHHHHc--CCCCcccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCR-----HVFHVDCIDMWFQ--SHSNCPLC 165 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~--~~~~CP~C 165 (264)
|-||++.-...+ ..+.| |+ ...|..|+..|+. ...+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999876654 33455 65 3689999999996 45569887
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0062 Score=57.23 Aligned_cols=49 Identities=29% Similarity=0.662 Sum_probs=38.3
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC--------CCCcccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS--------HSNCPLCRAPV 169 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~v 169 (264)
....|.||+++..-....+.+| |+|+||..|+..++.. .-.||-|+..-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 3467999999976667777888 9999999999999842 22588776643
No 75
>PHA03096 p28-like protein; Provisional
Probab=95.33 E-value=0.0087 Score=54.38 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=33.1
Q ss_pred CccccccccccCCC----ceeEeCCCCccccHHHHHHHHcC---CCCcccccc
Q 024682 122 LDCAVCLSEFEDNE----NGRVLPKCRHVFHVDCIDMWFQS---HSNCPLCRA 167 (264)
Q Consensus 122 ~~C~ICl~~~~~~~----~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~ 167 (264)
..|.||++...... .-..|+.|.|.||..|+..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 56999999876431 23357789999999999999843 334555544
No 76
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.019 Score=50.64 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=45.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
...|+||.+.+.+.-.+.+|.+|||+|+.+|+.+.+.....||+|-.++...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 3469999999998888888878999999999999999999999998877543
No 77
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.22 E-value=0.0096 Score=60.42 Aligned_cols=49 Identities=29% Similarity=0.794 Sum_probs=37.9
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC-------CCcccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH-------SNCPLCRA 167 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-------~~CP~Cr~ 167 (264)
.+..+|.||.+.+.....+---..|-|+||..||..|-.+. -.||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 45578999999987766555544588999999999998431 14999984
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.20 E-value=0.019 Score=51.97 Aligned_cols=43 Identities=30% Similarity=0.717 Sum_probs=35.2
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHH-cCCCCcccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF-QSHSNCPLCRA 167 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-~~~~~CP~Cr~ 167 (264)
+.|+.|-..+..+ ...+.|+|.||.+||...| .....||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999888776 2346799999999998765 56778999976
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.01 E-value=0.024 Score=37.64 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=22.1
Q ss_pred cccccccccCCCceeEeC-CCCccccHHHHHHHHc-CCCCcccccccc
Q 024682 124 CAVCLSEFEDNENGRVLP-KCRHVFHVDCIDMWFQ-SHSNCPLCRAPV 169 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v 169 (264)
|++|.+++...+ ....| .||+.++..|...-++ ....||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984332 33444 4889999999888875 477899999864
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.75 E-value=0.011 Score=51.84 Aligned_cols=45 Identities=27% Similarity=0.653 Sum_probs=31.7
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..|..|...=. ++..+++. |.|+||..|...-. ...||+||.++.
T Consensus 4 VhCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence 35777776533 55555554 99999999986532 238999999874
No 81
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.013 Score=53.24 Aligned_cols=44 Identities=41% Similarity=0.919 Sum_probs=32.9
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
-.|--| +|-.....|+.| |+|+||.+|-.. ...+.||.|-..|.
T Consensus 91 HfCd~C--d~PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRC--DFPIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred Eeeccc--CCcceeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 457777 444455667888 999999999754 44568999988775
No 82
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.025 Score=51.35 Aligned_cols=47 Identities=26% Similarity=0.743 Sum_probs=37.0
Q ss_pred CccccccccccCCC---ceeEeCCCCccccHHHHHHHHcCCC-Ccccccccc
Q 024682 122 LDCAVCLSEFEDNE---NGRVLPKCRHVFHVDCIDMWFQSHS-NCPLCRAPV 169 (264)
Q Consensus 122 ~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v 169 (264)
.+|-||-++|...+ ..++|. |||.|+..|+.+.+.... .||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998763 334455 999999999987765433 599999985
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.22 E-value=0.026 Score=36.61 Aligned_cols=41 Identities=27% Similarity=0.720 Sum_probs=22.6
Q ss_pred cccccccccCCCceeEeCCCCccccHHHHHHHHcCCC--Ccccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS--NCPLC 165 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~C 165 (264)
|.+|-+....+...... .|+=.+|..|+..++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777776666322222 3888999999999997655 69987
No 84
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.05 E-value=0.087 Score=49.36 Aligned_cols=29 Identities=38% Similarity=1.096 Sum_probs=22.3
Q ss_pred CCccccHHHHHHHHcC-------------CCCcccccccccC
Q 024682 143 CRHVFHVDCIDMWFQS-------------HSNCPLCRAPVQL 171 (264)
Q Consensus 143 C~H~fh~~Ci~~wl~~-------------~~~CP~Cr~~v~~ 171 (264)
|...+|.+|+.+||.+ +..||.||+.++.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4456899999999843 3369999998863
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.037 Score=46.61 Aligned_cols=31 Identities=32% Similarity=1.026 Sum_probs=24.6
Q ss_pred CCCccccHHHHHHHHcC-----C------CCcccccccccCC
Q 024682 142 KCRHVFHVDCIDMWFQS-----H------SNCPLCRAPVQLD 172 (264)
Q Consensus 142 ~C~H~fh~~Ci~~wl~~-----~------~~CP~Cr~~v~~~ 172 (264)
+||.-||.-|+..||.. + ..||.|..++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 39999999999999953 1 1599999887543
No 86
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.0041 Score=58.02 Aligned_cols=49 Identities=18% Similarity=0.586 Sum_probs=42.2
Q ss_pred CCccccccccccCC-CceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDN-ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|+||.+.+... +++..+- |||.+|..|+.+|+.....||.|+..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 35799999999776 5666666 9999999999999998888999999875
No 87
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.57 E-value=0.092 Score=47.10 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=41.1
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
.....|+|...+|........+-+|||+|...++...- ....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 45578999999996555555554599999999999872 356799999988744
No 88
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.50 E-value=0.071 Score=44.09 Aligned_cols=52 Identities=29% Similarity=0.665 Sum_probs=34.5
Q ss_pred CCCccccccccccCCCceeEeCC-----------CCc-cccHHHHHHHHcC-----------------------------
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPK-----------CRH-VFHVDCIDMWFQS----------------------------- 158 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~-----------C~H-~fh~~Ci~~wl~~----------------------------- 158 (264)
++..|+|||+. |....+|-. |+- .-|..|++..-+.
T Consensus 1 ed~~CpICme~---PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEH---PHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccC---CCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 35689999998 544455540 332 3578899887531
Q ss_pred --CCCcccccccccCCCc
Q 024682 159 --HSNCPLCRAPVQLDIT 174 (264)
Q Consensus 159 --~~~CP~Cr~~v~~~~~ 174 (264)
.-.||+||..|..+..
T Consensus 78 ~~~L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 78 QPELACPLCRGEVKGWTV 95 (162)
T ss_pred cccccCccccCceeceEE
Confidence 1259999999987643
No 89
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.11 E-value=0.05 Score=49.86 Aligned_cols=45 Identities=29% Similarity=0.783 Sum_probs=35.7
Q ss_pred CCCCCccccccccccCCCceeEeCCC--CccccHHHHHHHHcCCCCccccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKC--RHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C--~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..+-.+|+||.+.+..+ +.- | ||..|..|-.+ .+..||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----cee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 34567899999999988 333 6 69999999753 4667999999886
No 90
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.07 E-value=0.049 Score=37.08 Aligned_cols=45 Identities=31% Similarity=0.761 Sum_probs=31.9
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
..|..|... +.+-.++| |+|+.+..|-+.+ +-+-||+|-.++...
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 346666665 33345777 9999999997664 345699999988643
No 91
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.045 Score=55.78 Aligned_cols=43 Identities=23% Similarity=0.643 Sum_probs=32.9
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 169 (264)
...|..|--.+..|- +-=.|||.||.+|+. .+...||.|+...
T Consensus 840 ~skCs~C~~~LdlP~---VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPF---VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccce---eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 367999999887772 222399999999997 4456799998743
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.80 E-value=0.064 Score=49.43 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=36.8
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHc-CCCCcccccccccCCC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-SHSNCPLCRAPVQLDI 173 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~~~ 173 (264)
++.|+.|++++...++-..--+||...|.-|....-+ -+..||-||+......
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3459999999988776555434898777777544332 2567999999775443
No 93
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.70 E-value=0.068 Score=48.26 Aligned_cols=45 Identities=24% Similarity=0.645 Sum_probs=36.9
Q ss_pred CccccccccccCCCc-eeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 122 LDCAVCLSEFEDNEN-GRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
..|+||.+.+-.... +..++ |||..|..|.......+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 349999998766653 34455 9999999999998877789999988
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.09 E-value=0.068 Score=54.16 Aligned_cols=47 Identities=28% Similarity=0.609 Sum_probs=35.8
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCC--CCcccccccccCCC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH--SNCPLCRAPVQLDI 173 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~~ 173 (264)
..|.||++ .+.....+ |+|.||..|+..-+... ..||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 33345555 99999999998877542 25999999876543
No 95
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.051 Score=53.83 Aligned_cols=45 Identities=24% Similarity=0.606 Sum_probs=33.5
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
+...|.||+..|....-.-+.+.|||..|..|+.... +.+|| |+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 3467999999987765444445699999999998865 46788 554
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.12 Score=44.96 Aligned_cols=39 Identities=33% Similarity=0.795 Sum_probs=30.1
Q ss_pred cccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCccccccccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
|-.|.+. ...+.++| |.|. +|..|-.. -.+||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888776 66678888 9985 88889643 356999988654
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=0.14 Score=52.53 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=28.3
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHH
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF 156 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 156 (264)
.+.++.|.+|...+... .-.+-| |||.||++|+..-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 35678899999887654 334556 99999999997654
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.34 E-value=0.18 Score=45.76 Aligned_cols=53 Identities=23% Similarity=0.597 Sum_probs=37.7
Q ss_pred CCCCccccccccccCCCc-eeEeCCCC-----ccccHHHHHHHHc--CCCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNEN-GRVLPKCR-----HVFHVDCIDMWFQ--SHSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~-~~~lp~C~-----H~fh~~Ci~~wl~--~~~~CP~Cr~~v~~~ 172 (264)
.+...|-||.++...... ....| |. +..|..|+..|+. ....|.+|.......
T Consensus 76 ~~~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 76 SSGPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCCCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 335789999998654432 23444 65 5589999999997 455699998876544
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.07 E-value=0.17 Score=51.12 Aligned_cols=22 Identities=41% Similarity=1.034 Sum_probs=20.8
Q ss_pred CCccccHHHHHHHHcCCCCccc
Q 024682 143 CRHVFHVDCIDMWFQSHSNCPL 164 (264)
Q Consensus 143 C~H~fh~~Ci~~wl~~~~~CP~ 164 (264)
|+|+.|..|...|+.....||.
T Consensus 1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccHHHHHHHHhcCCcCCC
Confidence 9999999999999999999984
No 100
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.96 E-value=0.1 Score=55.51 Aligned_cols=46 Identities=24% Similarity=0.766 Sum_probs=37.2
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAP 168 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 168 (264)
....|.||++.+..-.. +- .|||.+|..|...|+..+..||.|+..
T Consensus 1152 ~~~~c~ic~dil~~~~~--I~-~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGG--IA-GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCC--ee-eechhHhhhHHHHHHHHhccCcchhhh
Confidence 34579999999874322 22 399999999999999999999999853
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=0.18 Score=44.79 Aligned_cols=53 Identities=28% Similarity=0.695 Sum_probs=36.5
Q ss_pred CCCCCccccccccccCCCce-eEeCCCC-----ccccHHHHHHHHcCC--------CCcccccccccC
Q 024682 118 PKEPLDCAVCLSEFEDNENG-RVLPKCR-----HVFHVDCIDMWFQSH--------SNCPLCRAPVQL 171 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~fh~~Ci~~wl~~~--------~~CP~Cr~~v~~ 171 (264)
.+.+..|=||+.--++.... -+-| |. |..|..|+..|+..+ -.||-|+.....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 34456799999875554322 2344 53 889999999999421 249999997753
No 102
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.05 E-value=0.32 Score=39.13 Aligned_cols=53 Identities=15% Similarity=0.429 Sum_probs=37.1
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHH-HH--cCCCCcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM-WF--QSHSNCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~-wl--~~~~~CP~Cr~~v~~~ 172 (264)
.--+|.||.|...+..-++--.-||-..|..|... |- ..+..||.|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 45789999998766532221123999999998755 54 3467899999988643
No 103
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.84 E-value=0.56 Score=31.91 Aligned_cols=41 Identities=32% Similarity=0.696 Sum_probs=33.5
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPL 164 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~ 164 (264)
....|.+|-+.|.+++.+.+-|.||-.+|..|.+. ...|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 34579999999999999999999999999999644 344544
No 104
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.45 E-value=0.37 Score=49.17 Aligned_cols=53 Identities=19% Similarity=0.608 Sum_probs=38.1
Q ss_pred CCCCCccccccccccCCCceeEeCCCCc-----cccHHHHHHHHcC--CCCcccccccccCC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRH-----VFHVDCIDMWFQS--HSNCPLCRAPVQLD 172 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H-----~fh~~Ci~~wl~~--~~~CP~Cr~~v~~~ 172 (264)
..++..|.||..+=..++.+. -| |++ ..|.+|+.+|+.- ...|-+|+.++.-.
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-cc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 345678999998855554443 34 653 4899999999964 33599999988643
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=0.43 Score=43.18 Aligned_cols=47 Identities=21% Similarity=0.631 Sum_probs=33.3
Q ss_pred cccccccc-ccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccc
Q 024682 123 DCAVCLSE-FEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPV 169 (264)
Q Consensus 123 ~C~ICl~~-~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v 169 (264)
.|++|-.. |-.++-..+...|+|..|..|++..+.. ...||.|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 48888765 4445433333349999999999999855 55799996644
No 106
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=87.74 E-value=0.31 Score=46.52 Aligned_cols=34 Identities=32% Similarity=0.700 Sum_probs=29.0
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF 156 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 156 (264)
++...|+||-.-|.++ ++|| |+|.+|..|...-+
T Consensus 2 eeelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCc---eEee-cccHHHHHHHHhhc
Confidence 4567899999999888 6888 99999999987554
No 107
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.36 E-value=0.63 Score=43.84 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=37.9
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC---Cccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS---NCPLCR 166 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~---~CP~Cr 166 (264)
....|+|=.+.-.+......|. |||+...+=++...+... .||+|=
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 4578999888877777778888 999999999999886644 599993
No 108
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=87.31 E-value=0.48 Score=31.88 Aligned_cols=43 Identities=33% Similarity=0.735 Sum_probs=23.7
Q ss_pred cccccccccCCC------ceeEeCCCCccccHHHHHHHHcCCCCccccc
Q 024682 124 CAVCLSEFEDNE------NGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 166 (264)
Q Consensus 124 C~ICl~~~~~~~------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr 166 (264)
|--|+..|..+. ....-|.|++.|+.+|=.---+.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 566777776652 4566778999999999543334556799984
No 109
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.08 E-value=0.18 Score=50.64 Aligned_cols=48 Identities=31% Similarity=0.837 Sum_probs=37.7
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC---CCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS---HSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~v~~ 171 (264)
...+|.||+..+..+ .+.+|.|.|+..|+..-|.. ...||+|+..+..
T Consensus 20 k~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 357899999999988 44459999999998776543 4469999976643
No 110
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.79 E-value=0.41 Score=48.77 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=37.7
Q ss_pred CCCccccccccccCCC---ceeEeCCCCccccHHHHHHHHcC------CCCcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNE---NGRVLPKCRHVFHVDCIDMWFQS------HSNCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~~~ 172 (264)
+...|.+|..++..++ .+-.+..|+|.||..||..|..+ +-.|++|...|..+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 3467888888887732 22223359999999999999843 44589998877544
No 111
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=0.4 Score=43.51 Aligned_cols=29 Identities=28% Similarity=0.795 Sum_probs=23.3
Q ss_pred CCccccHHHHHHHHc-------------CCCCcccccccccC
Q 024682 143 CRHVFHVDCIDMWFQ-------------SHSNCPLCRAPVQL 171 (264)
Q Consensus 143 C~H~fh~~Ci~~wl~-------------~~~~CP~Cr~~v~~ 171 (264)
|...+|..|+..|+. .+.+||.||+.++.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 667899999999983 24479999999864
No 112
>PF15050 SCIMP: SCIMP protein
Probab=84.28 E-value=4.5 Score=32.03 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024682 33 MFCSVILLFVVVFILVCFHSYASWLRYRHR 62 (264)
Q Consensus 33 ~l~~iilL~~vv~l~v~l~~~~~~~~~~~~ 62 (264)
++.++.++++.+++-++++..+||.+++-.
T Consensus 10 iiLAVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333344444444444444444666665533
No 113
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.72 E-value=0.56 Score=30.98 Aligned_cols=28 Identities=25% Similarity=0.961 Sum_probs=21.6
Q ss_pred CC-ccccHHHHHHHHcCCCCccccccccc
Q 024682 143 CR-HVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 143 C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
|. |..|-.|+...+.....||+|..++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 76 99999999999999999999998764
No 114
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.33 E-value=2.7 Score=26.43 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 44 VFILVCFHSYASWLRY 59 (264)
Q Consensus 44 v~l~v~l~~~~~~~~~ 59 (264)
++++++++.|+.+|++
T Consensus 17 ~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 17 AIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3334444444444433
No 115
>PF15102 TMEM154: TMEM154 protein family
Probab=83.21 E-value=0.32 Score=39.81 Aligned_cols=9 Identities=22% Similarity=0.885 Sum_probs=4.9
Q ss_pred HHHHHHHHc
Q 024682 149 VDCIDMWFQ 157 (264)
Q Consensus 149 ~~Ci~~wl~ 157 (264)
-.=+++|.+
T Consensus 127 meeldkwm~ 135 (146)
T PF15102_consen 127 MEELDKWMN 135 (146)
T ss_pred HHHHHhHHH
Confidence 344566664
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.18 E-value=0.48 Score=41.87 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=34.8
Q ss_pred CCCcccccccc-ccCCC-ceeEeCCCCccccHHHHHHHHcC-CCCcc--cccc
Q 024682 120 EPLDCAVCLSE-FEDNE-NGRVLPKCRHVFHVDCIDMWFQS-HSNCP--LCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~-~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP--~Cr~ 167 (264)
.+..|+||..+ |-.|+ ++.+-|.|-|..|..|++..|.. ...|| -|-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 45679999876 44454 33344559999999999999965 55699 6743
No 117
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.64 E-value=1.6 Score=34.28 Aligned_cols=46 Identities=30% Similarity=0.542 Sum_probs=35.8
Q ss_pred CCccccccccccCC----------CceeEeCCCCccccHHHHHHHHcCCCCccccc
Q 024682 121 PLDCAVCLSEFEDN----------ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 166 (264)
Q Consensus 121 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr 166 (264)
...|--|+..|..+ .....-+.|++.|+.+|=..+-+.-.+||.|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35699999998653 12344667999999999888877777899995
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.52 E-value=0.98 Score=45.88 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=29.5
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPL 164 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~ 164 (264)
.|.+|-..+..- ...-+.|||.-|.+|+.+|+..+.-||.
T Consensus 781 ~CtVC~~vi~G~--~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGV--DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeeee--EeecccccccccHHHHHHHHhcCCCCcc
Confidence 588886554221 2223459999999999999998888877
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.61 E-value=0.56 Score=44.52 Aligned_cols=39 Identities=26% Similarity=0.568 Sum_probs=28.3
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS 158 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~ 158 (264)
...+|.||..++...+.......|+|.||.+|+...+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 467899999655555333334459999999999988754
No 120
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.44 E-value=2.2 Score=33.95 Aligned_cols=11 Identities=9% Similarity=-0.209 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 024682 32 IMFCSVILLFV 42 (264)
Q Consensus 32 i~l~~iilL~~ 42 (264)
+.+|++.+++.
T Consensus 66 i~~Ii~gv~aG 76 (122)
T PF01102_consen 66 IIGIIFGVMAG 76 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehhHHHHHH
Confidence 33333333333
No 121
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.89 E-value=0.83 Score=45.26 Aligned_cols=46 Identities=30% Similarity=0.819 Sum_probs=37.4
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
.+....|.||+.+. ..+..+ |. |..|+.+|+..+..||+|+..+..
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhc
Confidence 34557899999998 334555 88 899999999999999999987753
No 122
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=79.98 E-value=2.3 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024682 37 VILLFVVVFILVCFHSYASWLRYR 60 (264)
Q Consensus 37 iilL~~vv~l~v~l~~~~~~~~~~ 60 (264)
+++++++.+.++++++|-+|.-++
T Consensus 14 F~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666777777766554
No 123
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=78.48 E-value=3.6 Score=37.78 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 31 KIMFCSVILLFVVVFILVCFHSYAS 55 (264)
Q Consensus 31 ~i~l~~iilL~~vv~l~v~l~~~~~ 55 (264)
..++++++.++++|+++|++++.+|
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 124
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=74.83 E-value=2.6 Score=28.05 Aligned_cols=43 Identities=26% Similarity=0.690 Sum_probs=19.0
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcC-----CCCccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-----HSNCPLCRAP 168 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~ 168 (264)
..|+|....+..+ +|-. .|.|.-+.+ ++.|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGK-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEET-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCC-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4688888888776 4444 499974332 2344422 2259999763
No 125
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=74.47 E-value=8.3 Score=28.49 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.1
Q ss_pred ccCCCCCHHHHhhCCceecCCC
Q 024682 93 HAHQALDLSILKRIPAFVYSPN 114 (264)
Q Consensus 93 ~~~~gl~~~~i~~lp~~~~~~~ 114 (264)
.-...+..+.+++|..+.....
T Consensus 47 ~F~D~lTpDQVrAlHRlvTsSp 68 (92)
T PHA02681 47 SFEDKMTDDQVRAFHALVTSSP 68 (92)
T ss_pred hhhccCCHHHHHHHHHHHhCCC
Confidence 3456788999999988877765
No 126
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=73.83 E-value=6.9 Score=28.86 Aligned_cols=6 Identities=33% Similarity=0.268 Sum_probs=1.8
Q ss_pred HHHHHH
Q 024682 48 VCFHSY 53 (264)
Q Consensus 48 v~l~~~ 53 (264)
++.++|
T Consensus 22 vW~iv~ 27 (81)
T PF00558_consen 22 VWTIVY 27 (81)
T ss_dssp HHHHH-
T ss_pred HHHHHH
Confidence 333333
No 127
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=72.92 E-value=4.5 Score=30.05 Aligned_cols=27 Identities=11% Similarity=0.407 Sum_probs=13.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH
Q 024682 25 SYVLNGKIMFCSVILLFVVVFILVCFH 51 (264)
Q Consensus 25 ~~~~~~~i~l~~iilL~~vv~l~v~l~ 51 (264)
.--+..-+|++..+++|+++++++++.
T Consensus 30 ~sfirdFvLVic~~lVfVii~lFi~ll 56 (84)
T PF06143_consen 30 RSFIRDFVLVICCFLVFVIIVLFILLL 56 (84)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544444443
No 128
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.59 E-value=6.2 Score=31.41 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 024682 34 FCSVILLFVVVFI 46 (264)
Q Consensus 34 l~~iilL~~vv~l 46 (264)
.++.|++.+++.+
T Consensus 65 ~i~~Ii~gv~aGv 77 (122)
T PF01102_consen 65 AIIGIIFGVMAGV 77 (122)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHH
Confidence 3333333333333
No 129
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=71.88 E-value=15 Score=29.00 Aligned_cols=29 Identities=7% Similarity=-0.179 Sum_probs=11.4
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 024682 22 SASSYVLNGKIMFCSVILLFVVVFILVCF 50 (264)
Q Consensus 22 ~~~~~~~~~~i~l~~iilL~~vv~l~v~l 50 (264)
.+..+...+.++-..|..|.++++..+..
T Consensus 75 sp~ps~p~d~aLp~VIGGLcaL~LaamGA 103 (126)
T PF03229_consen 75 SPGPSPPVDFALPLVIGGLCALTLAAMGA 103 (126)
T ss_pred CCCCCCCcccchhhhhhHHHHHHHHHHHH
Confidence 33444444444433333333333333333
No 130
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=69.11 E-value=2.7 Score=36.49 Aligned_cols=44 Identities=23% Similarity=0.579 Sum_probs=34.4
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
-..|.+|-...--+ +....||=.+|..|+...+++...||.|-.
T Consensus 181 lk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 35799998886554 223347778999999999999999999944
No 131
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=69.05 E-value=19 Score=27.63 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=5.8
Q ss_pred CCcccCCCCCcc
Q 024682 6 STTLTAPSGLDQ 17 (264)
Q Consensus 6 ~~~~~~~~~~~~ 17 (264)
+++...|.+.+.
T Consensus 2 s~~~~~~~~~~~ 13 (102)
T PF15176_consen 2 SSSANAPGPGEG 13 (102)
T ss_pred cccccCCCCCCC
Confidence 444445554444
No 132
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=68.75 E-value=4 Score=35.23 Aligned_cols=42 Identities=33% Similarity=0.860 Sum_probs=29.9
Q ss_pred CCCcccccccc-----ccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 120 EPLDCAVCLSE-----FEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~-----~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
.+..|-+|-+. |+. +.+..-+.|+-+||..|.. ...||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45678888753 222 3556667799999999975 267999954
No 133
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.32 E-value=2.6 Score=40.07 Aligned_cols=47 Identities=23% Similarity=0.462 Sum_probs=33.3
Q ss_pred CCCccccccccccCCCceeEeC-CCCccccHHHHHHHHcCCCCccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLP-KCRHVFHVDCIDMWFQSHSNCPLCR 166 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~wl~~~~~CP~Cr 166 (264)
.-..|+.|.-.+...++.-... .|||.||+.|...|...+..|..|-
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCcc
Confidence 3457888887776555433322 3899999999999988777775553
No 134
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=67.07 E-value=2.3 Score=42.38 Aligned_cols=45 Identities=31% Similarity=0.735 Sum_probs=27.3
Q ss_pred CCCCcccccccc-----ccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 119 KEPLDCAVCLSE-----FEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 119 ~~~~~C~ICl~~-----~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
.....|.+|-.. |. .+.++.--.|+++||..|... .+..||.|-+
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred cCeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 345678888221 21 223333334999999999754 3444999954
No 135
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=67.04 E-value=6.1 Score=29.65 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=19.5
Q ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 024682 19 QNPSASSYVLNGKIMFCSVILLFVVVFILVCFHSYASWLRYRHRHR 64 (264)
Q Consensus 19 ~~~~~~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~~~~~~~ 64 (264)
..++++++..+-.+.+++++++.++++-+.+.+++..+++.-+.++
T Consensus 25 ~~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlIlv~KAkr 70 (91)
T PF01708_consen 25 AAPSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLILVLKAKR 70 (91)
T ss_pred CCCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHhheeeecc
Confidence 3445555654443333333333333333344444444444444433
No 136
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=66.09 E-value=11 Score=32.92 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=20.8
Q ss_pred ccCCCCCcccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 9 LTAPSGLDQIQNPSASSYVLNGKIMFCSVILLFVVVFILVCFHSYASWLR 58 (264)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~ 58 (264)
++.|...+.--++.+..-.-..+||++++ ...+.|+++|++..++|+++
T Consensus 16 ~~tPl~~~Ia~d~~~~~~~d~~~I~iaiV-AG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 16 LETPLDRNIAGDPASSRSKDYVKIMIAIV-AGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ccCCCcCcccCCCCccccccceeeeeeee-cchhhhHHHHHHHHHHHHHh
Confidence 34444444333333222222335454443 44444445555555555443
No 137
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=66.09 E-value=14 Score=30.95 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024682 34 FCSVILLFVVVFILVCFHSYASWLRYRH 61 (264)
Q Consensus 34 l~~iilL~~vv~l~v~l~~~~~~~~~~~ 61 (264)
+...+++++++..++++++.+|.++.++
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444555555566665554
No 138
>PTZ00046 rifin; Provisional
Probab=65.38 E-value=6.8 Score=36.78 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 32 IMFCSVILLFVVVFILVCFHSYASWLRY 59 (264)
Q Consensus 32 i~l~~iilL~~vv~l~v~l~~~~~~~~~ 59 (264)
-++++++.++++|+++|++++..||.++
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555555555555555555444333
No 139
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=65.25 E-value=7.3 Score=36.50 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 32 IMFCSVILLFVVVFILVCFHSYASWLRY 59 (264)
Q Consensus 32 i~l~~iilL~~vv~l~v~l~~~~~~~~~ 59 (264)
-++++++.++++|+++|++++..||.++
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444555555555555555555444333
No 140
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=65.20 E-value=12 Score=28.53 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=24.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 24 SSYVLNGKIMFCSVILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 24 ~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~ 57 (264)
+++.-.+-|++|.++.+.+++.+++-+++|+|-+
T Consensus 12 sGsL~PWeIfLItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 12 SGSLKPWEIFLITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555667788888888888888887777777543
No 141
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=64.82 E-value=17 Score=26.07 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 30 GKIMFCSVILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 30 ~~i~l~~iilL~~vv~l~v~l~~~~~~~ 57 (264)
..++++++.++|++++++.+++.+..++
T Consensus 5 l~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666655555555555
No 142
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=63.67 E-value=3.8 Score=23.53 Aligned_cols=23 Identities=26% Similarity=0.686 Sum_probs=13.3
Q ss_pred ccccccccccCCCceeEeCCCCccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVF 147 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~f 147 (264)
.|+-|...+.. ..+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 46667666533 234555677766
No 143
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=63.43 E-value=12 Score=25.68 Aligned_cols=45 Identities=20% Similarity=0.652 Sum_probs=32.9
Q ss_pred ccccccccccCCC-ceeEeCCCC--ccccHHHHHHHHcCCCCcccccccccCC
Q 024682 123 DCAVCLSEFEDNE-NGRVLPKCR--HVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 123 ~C~ICl~~~~~~~-~~~~lp~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
.|-.|-.++.... ..++ |. ..||..|.+..| +..||.|-..+...
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4777877776654 3333 66 469999999977 57899998877643
No 145
>PHA02650 hypothetical protein; Provisional
Probab=62.24 E-value=16 Score=26.76 Aligned_cols=19 Identities=5% Similarity=0.079 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024682 40 LFVVVFILVCFHSYASWLR 58 (264)
Q Consensus 40 L~~vv~l~v~l~~~~~~~~ 58 (264)
+++++++++++++|.+...
T Consensus 56 i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 56 IFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4444555555555655443
No 146
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=58.94 E-value=12 Score=33.96 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=4.3
Q ss_pred HHHHHHHHhc
Q 024682 52 SYASWLRYRH 61 (264)
Q Consensus 52 ~~~~~~~~~~ 61 (264)
+++.|+++|+
T Consensus 277 iLYiWlyrrR 286 (295)
T TIGR01478 277 ILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHhh
Confidence 3344554443
No 147
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.48 E-value=6.1 Score=38.17 Aligned_cols=37 Identities=22% Similarity=0.585 Sum_probs=28.9
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS 158 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~ 158 (264)
....+|-||.+.+.. .+..+. |||.|+..|....+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 445789999999865 344455 9999999999888754
No 148
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=58.39 E-value=8.8 Score=35.57 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=42.4
Q ss_pred HHHHhhCCceecCCCCCCC-CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 100 LSILKRIPAFVYSPNIEDP-KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 100 ~~~i~~lp~~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
+..---+|...|....... .....|-.|.++.... ....-..|+|.||.+|-.-.-++-..||.|..
T Consensus 308 RSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~-~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 308 RSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSS-GRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHhhcCCcchhhccccccCCCcceeeeccccCCC-CcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 3444445666665542222 2334599997776554 34445569999999996555455667999963
No 149
>PHA02849 putative transmembrane protein; Provisional
Probab=58.15 E-value=26 Score=25.58 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 30 GKIMFCSVILLFVVVFILVCFHSYASWLRY 59 (264)
Q Consensus 30 ~~i~l~~iilL~~vv~l~v~l~~~~~~~~~ 59 (264)
|.+|++.+.+ +++++++.+++.+.+|...
T Consensus 15 g~v~vi~v~v-~vI~i~~flLlyLvkws~v 43 (82)
T PHA02849 15 GAVTVILVFV-LVISFLAFMLLYLIKWSYV 43 (82)
T ss_pred chHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4455554433 3333333333444555443
No 150
>PTZ00370 STEVOR; Provisional
Probab=58.13 E-value=13 Score=33.84 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=4.3
Q ss_pred HHHHHHHHhc
Q 024682 52 SYASWLRYRH 61 (264)
Q Consensus 52 ~~~~~~~~~~ 61 (264)
+++.|+++|+
T Consensus 273 ilYiwlyrrR 282 (296)
T PTZ00370 273 ILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHhh
Confidence 3344544443
No 151
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.28 E-value=18 Score=27.78 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=7.9
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 024682 26 YVLNGKIMFCSVILLFVVVFI 46 (264)
Q Consensus 26 ~~~~~~i~l~~iilL~~vv~l 46 (264)
|.+-..+.+++++++++++++
T Consensus 10 ~~ie~sl~~~~~~l~~~~~~l 30 (108)
T PF07219_consen 10 YRIETSLWVALILLLLLFVVL 30 (108)
T ss_pred EEEEeeHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 152
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=56.49 E-value=11 Score=34.81 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=35.5
Q ss_pred CCCCcccccccccc--------------C-CC-ceeEeCCCCccccHHHHHHHHcC---------CCCcccccccccCCC
Q 024682 119 KEPLDCAVCLSEFE--------------D-NE-NGRVLPKCRHVFHVDCIDMWFQS---------HSNCPLCRAPVQLDI 173 (264)
Q Consensus 119 ~~~~~C~ICl~~~~--------------~-~~-~~~~lp~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~v~~~~ 173 (264)
....+|++|+..=. + +- .-..-| |||+--.+-..-|-+. +..||.|-..+....
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 34578999998621 0 00 011234 9999888888889743 446999987765443
Q ss_pred c
Q 024682 174 T 174 (264)
Q Consensus 174 ~ 174 (264)
+
T Consensus 418 ~ 418 (429)
T KOG3842|consen 418 G 418 (429)
T ss_pred c
Confidence 3
No 153
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.08 E-value=7 Score=24.19 Aligned_cols=27 Identities=33% Similarity=0.795 Sum_probs=16.3
Q ss_pred CccccccccccCCCc-------eeEeCCCCcccc
Q 024682 122 LDCAVCLSEFEDNEN-------GRVLPKCRHVFH 148 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~-------~~~lp~C~H~fh 148 (264)
..|+-|-..|..++. ...-+.|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 358888888876653 122345777764
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.64 E-value=14 Score=34.23 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=32.6
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC---CCcccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH---SNCPLC 165 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~C 165 (264)
....|++--+.-.+......+. |||+.-..-++..-+.. ..||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 4467998666655555566776 99999998887765442 349999
No 155
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.54 E-value=18 Score=33.16 Aligned_cols=50 Identities=22% Similarity=0.492 Sum_probs=40.2
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
+...|-||...+..+. ....|.|.|++.|...|......||.|+....+.
T Consensus 104 ~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 4467999999887773 2224999999999999999999999999866543
No 156
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=55.50 E-value=8.4 Score=23.73 Aligned_cols=27 Identities=30% Similarity=0.730 Sum_probs=16.2
Q ss_pred CccccccccccCCCce-------eEeCCCCcccc
Q 024682 122 LDCAVCLSEFEDNENG-------RVLPKCRHVFH 148 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~-------~~lp~C~H~fh 148 (264)
.+|+=|...|..+++. ..-+.|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 3688888888766531 11234777764
No 157
>PF15179 Myc_target_1: Myc target protein 1
Probab=55.20 E-value=32 Score=29.33 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024682 32 IMFCSVILLFVVVFILVCFHSYASWLRYRH 61 (264)
Q Consensus 32 i~l~~iilL~~vv~l~v~l~~~~~~~~~~~ 61 (264)
++++..+..++.+++-.+++++..|+-+|+
T Consensus 21 lIlaF~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444455555556666677777776554
No 158
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=54.37 E-value=37 Score=29.97 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=6.8
Q ss_pred CHHHHhhCCceecCC
Q 024682 99 DLSILKRIPAFVYSP 113 (264)
Q Consensus 99 ~~~~i~~lp~~~~~~ 113 (264)
+++-++-|-+.....
T Consensus 232 dke~vklltvkt~s~ 246 (259)
T PF07010_consen 232 DKESVKLLTVKTISH 246 (259)
T ss_pred cccceeEEEEEeccc
Confidence 444444444444433
No 159
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.30 E-value=12 Score=33.41 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ 157 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~ 157 (264)
.++-..|..||..+.++ +..+=||+|+.+||.+.+.
T Consensus 40 iK~FdcCsLtLqPc~dP----vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP----VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCC----ccCCCCeeeeHHHHHHHHH
Confidence 35567899999999888 4434899999999998873
No 160
>PHA02819 hypothetical protein; Provisional
Probab=53.99 E-value=37 Score=24.28 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 40 LFVVVFILVCFHSYAS 55 (264)
Q Consensus 40 L~~vv~l~v~l~~~~~ 55 (264)
+++++++++++++|.+
T Consensus 53 l~~~~~~~~~~flYLK 68 (71)
T PHA02819 53 LVTIVFVIIFIIFYLK 68 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444543
No 161
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.57 E-value=4.7 Score=41.34 Aligned_cols=45 Identities=20% Similarity=0.505 Sum_probs=30.8
Q ss_pred CCccccccccccCC----CceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 121 PLDCAVCLSEFEDN----ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 121 ~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
...|.-|++..-.. +.+.+.- |||.||..|+..-..++. |-.|..
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhhc
Confidence 34799998876422 3455665 999999999977654443 655543
No 162
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=53.08 E-value=8.2 Score=34.76 Aligned_cols=49 Identities=22% Similarity=0.645 Sum_probs=35.0
Q ss_pred CCccccccccccCCCceeEe---CCCCccccHHHHHHHH-cC--------CCCcccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVL---PKCRHVFHVDCIDMWF-QS--------HSNCPLCRAPV 169 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~l---p~C~H~fh~~Ci~~wl-~~--------~~~CP~Cr~~v 169 (264)
..+|-+|.+++...+..+.. +.|+-.+|..|+..-+ .. ...||.|+.-+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 35899999999665555543 3488889999998843 22 23599998833
No 163
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=53.07 E-value=19 Score=29.61 Aligned_cols=6 Identities=17% Similarity=-0.081 Sum_probs=2.2
Q ss_pred HHHHHh
Q 024682 55 SWLRYR 60 (264)
Q Consensus 55 ~~~~~~ 60 (264)
.|+-.|
T Consensus 50 ~lcssR 55 (189)
T PF05568_consen 50 YLCSSR 55 (189)
T ss_pred HHHhhh
Confidence 333333
No 164
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=52.75 E-value=8.2 Score=25.05 Aligned_cols=43 Identities=26% Similarity=0.596 Sum_probs=27.6
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHc------CCCCccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ------SHSNCPLCR 166 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~------~~~~CP~Cr 166 (264)
.|.||... ...+....-..|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~-~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQS-DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSS-CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCc-CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 37888883 33334444445899999999855332 234688885
No 165
>PHA02935 Hypothetical protein; Provisional
Probab=52.48 E-value=35 Score=29.78 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=25.1
Q ss_pred cCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 18 IQNPSASSYVLNGKIMFCSVILLFVVVFILVCFHSYAS 55 (264)
Q Consensus 18 ~~~~~~~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~ 55 (264)
.-++++..+.+.+.+|+..+..|.+++++++++...+.
T Consensus 300 dnndysapmnvdnlimivlitmlsiiiiiivviaaiam 337 (349)
T PHA02935 300 DNNDYSAPMNVDNLIMIVLITMLSIIIIIIVVIAAIAM 337 (349)
T ss_pred ccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888777777666666665555444
No 166
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=52.19 E-value=6 Score=27.57 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=19.1
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF 156 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 156 (264)
.+...|.+|...|..-..-..-..||++|+..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34578999999996543333334599999999875543
No 167
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=52.04 E-value=13 Score=21.97 Aligned_cols=36 Identities=28% Similarity=0.635 Sum_probs=23.7
Q ss_pred cccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccc
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 169 (264)
|..|-+.+...+. .+.. =+..||..| ..|..|+..+
T Consensus 2 C~~C~~~i~~~~~-~~~~-~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGEL-VLRA-LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcE-EEEe-CCccccccC--------CCCcccCCcC
Confidence 7778887765422 2222 467899888 4788887655
No 168
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=51.38 E-value=38 Score=24.00 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=15.4
Q ss_pred CCCCcccchhH-HHHHHHHHHHHHHHHHH
Q 024682 22 SASSYVLNGKI-MFCSVILLFVVVFILVC 49 (264)
Q Consensus 22 ~~~~~~~~~~i-~l~~iilL~~vv~l~v~ 49 (264)
.++=|.++|.. |++++++|+.+++++.+
T Consensus 4 ~r~~f~LnGi~G~LIAvvLLLsIl~~lt~ 32 (66)
T PF13179_consen 4 NRSVFGLNGITGMLIAVVLLLSILAFLTY 32 (66)
T ss_pred ccceeeecchHhHHHHHHHHHHHHHHHHH
Confidence 44557777743 55555555555554443
No 169
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.23 E-value=12 Score=34.76 Aligned_cols=47 Identities=23% Similarity=0.645 Sum_probs=34.8
Q ss_pred CccccccccccCCCceeEeC-CCCccccHHHHHHHHcCCCCcccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLP-KCRHVFHVDCIDMWFQSHSNCPLCRAPV 169 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 169 (264)
..|+||-+.....+... +| .|+|..|..|+..-...+.+||.||.+.
T Consensus 250 ~s~p~~~~~~~~~d~~~-lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNF-LPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCccccccccc-ccccccccchhhhhhcccccCCCCCccCCcc
Confidence 67999999874443322 33 4888888888888778888999999544
No 170
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.01 E-value=14 Score=33.08 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=36.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCCC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDI 173 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 173 (264)
...|+|---+|.....-..+-.|||+|-..=+.+. ..++|++|.+.+....
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 35799887777655444445559999998877663 3678999999886543
No 171
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=50.82 E-value=39 Score=22.60 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=14.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 24 SSYVLNGKIMFCSVILLFVVVFILVCFHSYASWLRY 59 (264)
Q Consensus 24 ~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~~ 59 (264)
+.|..+..-+=+.-+++..+++++.+++++...+++
T Consensus 5 ~pF~YDy~tLrigGLi~A~vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 5 DPFYYDYETLRIGGLIFAGVLFILGILIILSGKCKC 40 (50)
T ss_dssp SGGGGCHHHHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred CCCccchhHhhccchHHHHHHHHHHHHHHHcCcccc
Confidence 344444433333333333344444444444444443
No 172
>PHA02844 putative transmembrane protein; Provisional
Probab=50.49 E-value=28 Score=25.18 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 40 LFVVVFILVCFHSYAS 55 (264)
Q Consensus 40 L~~vv~l~v~l~~~~~ 55 (264)
+++++++++++++|.+
T Consensus 55 i~~v~~~~~~~flYLK 70 (75)
T PHA02844 55 IIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444555543
No 173
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=49.85 E-value=1.2 Score=36.73 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=8.8
Q ss_pred CCCCCcccchhHHHHHHHHH
Q 024682 21 PSASSYVLNGKIMFCSVILL 40 (264)
Q Consensus 21 ~~~~~~~~~~~i~l~~iilL 40 (264)
..+++..-..+-++|.+++.
T Consensus 38 ~~ssGlS~knknIVIGvVVG 57 (154)
T PF04478_consen 38 SSSSGLSSKNKNIVIGVVVG 57 (154)
T ss_pred CCCCCCCcCCccEEEEEEec
Confidence 34455555554333433333
No 174
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=49.42 E-value=46 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 32 IMFCSVILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 32 i~l~~iilL~~vv~l~v~l~~~~~~~ 57 (264)
++.+.+++.|+.++++.++..|+|-.
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSK 69 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSK 69 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666666666666666666533
No 175
>PRK00523 hypothetical protein; Provisional
Probab=49.00 E-value=69 Score=23.09 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 024682 39 LLFVVVFILVCFH 51 (264)
Q Consensus 39 lL~~vv~l~v~l~ 51 (264)
++++++.+++-++
T Consensus 12 i~~li~G~~~Gff 24 (72)
T PRK00523 12 IPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 176
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=48.95 E-value=15 Score=24.18 Aligned_cols=39 Identities=23% Similarity=0.524 Sum_probs=26.8
Q ss_pred cccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 124 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 124 C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
|..|-..+...+.+ +.. -+..||..| .+|-.|+.++...
T Consensus 1 C~~C~~~I~~~~~~-~~~-~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKA-MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEE-TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEe-CCcEEEccc--------cccCCCCCccCCC
Confidence 66777777654432 223 778899888 4899998877543
No 177
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=48.61 E-value=22 Score=32.37 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 33 MFCSVILLFVVVFILVCFHSYASWLR 58 (264)
Q Consensus 33 ~l~~iilL~~vv~l~v~l~~~~~~~~ 58 (264)
+.+.+++++.|+++++++++|-|+..
T Consensus 263 iaalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444445555555566666655443
No 178
>PTZ00370 STEVOR; Provisional
Probab=48.10 E-value=23 Score=32.31 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024682 33 MFCSVILLFVVVFILVCFHSYASWLRYR 60 (264)
Q Consensus 33 ~l~~iilL~~vv~l~v~l~~~~~~~~~~ 60 (264)
+.+.+++++.|+++++++++|-|+..-+
T Consensus 259 iaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4444455555555566666666554443
No 179
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=48.02 E-value=48 Score=20.86 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 024682 41 FVVVFILVCFHSYASWLRYRHRH 63 (264)
Q Consensus 41 ~~vv~l~v~l~~~~~~~~~~~~~ 63 (264)
.+++.++++.+....+.++++++
T Consensus 11 ~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 11 AVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 33444444444444444444443
No 180
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=45.69 E-value=48 Score=24.35 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 31 KIMFCSVILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 31 ~i~l~~iilL~~vv~l~v~l~~~~~~~ 57 (264)
.+|+.+..++|+++++++++.-+..++
T Consensus 9 ~l~v~GM~~VF~fL~lLi~~i~~~~~~ 35 (82)
T TIGR01195 9 TLTVLGMGIVFLFLSLLIYAVRGMGKV 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444433333333
No 181
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA03054 IMV membrane protein; Provisional
Probab=45.31 E-value=59 Score=23.32 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024682 40 LFVVVFILVCFHSYA 54 (264)
Q Consensus 40 L~~vv~l~v~l~~~~ 54 (264)
+++++++++++++|.
T Consensus 55 l~~v~~~~l~~flYL 69 (72)
T PHA03054 55 FFIVLILLLLIYLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 183
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=15 Score=37.29 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=32.5
Q ss_pred ccccccccccCCCceeEeCCCCc-cccHHHHHHHH--cC----CCCcccccccccC
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRH-VFHVDCIDMWF--QS----HSNCPLCRAPVQL 171 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H-~fh~~Ci~~wl--~~----~~~CP~Cr~~v~~ 171 (264)
.|+||-..+.-. ....||| ..+..|..... .. ...||+||..+..
T Consensus 2 ~c~ic~~s~~~~----~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFV----GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCcccc----ccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 599998875443 4556999 89999987764 22 4458999997753
No 184
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.77 E-value=10 Score=34.49 Aligned_cols=37 Identities=27% Similarity=0.669 Sum_probs=28.1
Q ss_pred CCCCccccccccccCCCceeEeCCC----CccccHHHHHHHHcCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKC----RHVFHVDCIDMWFQSH 159 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C----~H~fh~~Ci~~wl~~~ 159 (264)
..-+.|.+|.|.+++-. ... | .|.||.-|-++-++.+
T Consensus 266 ~apLcCTLC~ERLEDTH---FVQ-CPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTH---FVQ-CPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCc---eee-cCCCcccceecccCHHHHHhh
Confidence 34578999999998874 222 5 5999999998888653
No 185
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=44.73 E-value=38 Score=24.05 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024682 37 VILLFVVVFILVCFHSYASWLRYR 60 (264)
Q Consensus 37 iilL~~vv~l~v~l~~~~~~~~~~ 60 (264)
.++|+++.+.++.+++|..+.+.+
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444555555566666544433
No 186
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=44.68 E-value=18 Score=29.04 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 024682 47 LVCFHSYASWLRYR 60 (264)
Q Consensus 47 ~v~l~~~~~~~~~~ 60 (264)
.++++++.+|++++
T Consensus 116 s~~~~~~yr~~r~~ 129 (139)
T PHA03099 116 TCCLLSVYRFTRRT 129 (139)
T ss_pred HHHHHhhheeeecc
Confidence 34444445555444
No 187
>PLN02189 cellulose synthase
Probab=44.21 E-value=27 Score=37.29 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=34.2
Q ss_pred CCCccccccccccCCC--ceeE-eCCCCccccHHHHHHHH-cCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNE--NGRV-LPKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~--~~~~-lp~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~v~ 170 (264)
....|.||-+++.... ++.+ ...|+--.|..|.+-=- +.++.||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3457999999975322 2332 22366678999985432 44677999999876
No 188
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=43.47 E-value=19 Score=23.80 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=23.9
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHH
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF 156 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 156 (264)
..|.+|-..|..-..-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46889988876543333333599999999976543
No 189
>PHA02975 hypothetical protein; Provisional
Probab=42.86 E-value=59 Score=23.16 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 40 LFVVVFILVCFHSYAS 55 (264)
Q Consensus 40 L~~vv~l~v~l~~~~~ 55 (264)
+++++++++++++|.+
T Consensus 51 i~~v~~~~~~~flYLK 66 (69)
T PHA02975 51 IIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444445543
No 190
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=41.30 E-value=58 Score=24.19 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024682 31 KIMFCSVILLFVVVFILVCFH 51 (264)
Q Consensus 31 ~i~l~~iilL~~vv~l~v~l~ 51 (264)
.+|+.+..++|+++++++++.
T Consensus 13 ~lm~~GM~~VF~fL~lLi~~~ 33 (85)
T PRK03814 13 TLMLTGMGVVFIFLTLLVYLV 33 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444333
No 191
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=41.30 E-value=5.9 Score=35.92 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=20.1
Q ss_pred CCccccccccccCCCceeEeCC----CCccccHHHHHHHHcCCCCccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPK----CRHVFHVDCIDMWFQSHSNCPLCRAP 168 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~----C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 168 (264)
...|+||-..-... .+... -.|.+|.-|-..|-..+..||.|-..
T Consensus 172 ~g~CPvCGs~P~~s---~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLS---VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEE---EEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceE---EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 46899998873222 11111 23567788888998788889999553
No 192
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=41.23 E-value=41 Score=25.13 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024682 43 VVFILVCFHSYASWLRYR 60 (264)
Q Consensus 43 vv~l~v~l~~~~~~~~~~ 60 (264)
+++++++++.|+.|-..+
T Consensus 10 ~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 193
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=41.20 E-value=18 Score=24.17 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=13.4
Q ss_pred CCCccccHHHHHHHHcCCCCcccc
Q 024682 142 KCRHVFHVDCIDMWFQSHSNCPLC 165 (264)
Q Consensus 142 ~C~H~fh~~Ci~~wl~~~~~CP~C 165 (264)
.|||.|...=-+. ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 4777765443222 2445679988
No 194
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.01 E-value=70 Score=22.21 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024682 37 VILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 37 iilL~~vv~l~v~l~~~~~~~ 57 (264)
++--+++++++++++.++-|.
T Consensus 9 ~a~a~~t~~~~l~fiavi~~a 29 (60)
T COG4736 9 FADAWGTIAFTLFFIAVIYFA 29 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444333333
No 195
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=40.90 E-value=58 Score=26.79 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024682 37 VILLFVVVFILVCFHSYASWLRYR 60 (264)
Q Consensus 37 iilL~~vv~l~v~l~~~~~~~~~~ 60 (264)
+.++..+++|+++++++.+..+++
T Consensus 36 iaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 36 IAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 333333444444445555555544
No 196
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=40.89 E-value=16 Score=25.83 Aligned_cols=12 Identities=25% Similarity=1.021 Sum_probs=8.6
Q ss_pred cccHHHHHHHHc
Q 024682 146 VFHVDCIDMWFQ 157 (264)
Q Consensus 146 ~fh~~Ci~~wl~ 157 (264)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 197
>PHA02657 hypothetical protein; Provisional
Probab=40.43 E-value=65 Score=24.02 Aligned_cols=14 Identities=21% Similarity=-0.026 Sum_probs=8.7
Q ss_pred ccCCCCCcccCCCC
Q 024682 9 LTAPSGLDQIQNPS 22 (264)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (264)
+|+|.-..+.-|++
T Consensus 5 ~~~~~~~~~~~~~~ 18 (95)
T PHA02657 5 TEAPLTTLPADNYY 18 (95)
T ss_pred ccCCcccccCCceE
Confidence 46666666666655
No 198
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=40.10 E-value=1e+02 Score=20.28 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.1
Q ss_pred HHHHHH
Q 024682 54 ASWLRY 59 (264)
Q Consensus 54 ~~~~~~ 59 (264)
++-+++
T Consensus 32 ~Kqilf 37 (54)
T PF06716_consen 32 YKQILF 37 (54)
T ss_pred HHHHHH
Confidence 333333
No 199
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=40.02 E-value=46 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=10.1
Q ss_pred CCcccchhHHHHHHHHH
Q 024682 24 SSYVLNGKIMFCSVILL 40 (264)
Q Consensus 24 ~~~~~~~~i~l~~iilL 40 (264)
.+|.+++++++++.+.+
T Consensus 113 p~~gY~nklilaisvtv 129 (154)
T PF14914_consen 113 PGYGYNNKLILAISVTV 129 (154)
T ss_pred ccccccchhHHHHHHHH
Confidence 56777777665544433
No 200
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=39.82 E-value=52 Score=26.58 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024682 33 MFCSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 33 ~l~~iilL~~vv~l~v~l~~~ 53 (264)
+++.-+++.+++.++.++.++
T Consensus 120 ~~~G~~i~~~v~~~i~Y~l~~ 140 (154)
T PF09835_consen 120 FLLGSLILGIVLGIISYFLVY 140 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444443333333
No 201
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=39.59 E-value=9.7 Score=36.17 Aligned_cols=55 Identities=27% Similarity=0.602 Sum_probs=0.0
Q ss_pred CCcccccccccc--------------CC--CceeEeCCCCccccHHHHHHHHcC---------CCCcccccccccCCCcc
Q 024682 121 PLDCAVCLSEFE--------------DN--ENGRVLPKCRHVFHVDCIDMWFQS---------HSNCPLCRAPVQLDITL 175 (264)
Q Consensus 121 ~~~C~ICl~~~~--------------~~--~~~~~lp~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~v~~~~~~ 175 (264)
..+|++|+..-. +. -.-...| |||+--.+...-|-+. +..||.|-.++....+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 578999997621 00 0112345 9999988899999642 34699998887654433
Q ss_pred C
Q 024682 176 V 176 (264)
Q Consensus 176 ~ 176 (264)
.
T Consensus 407 v 407 (416)
T PF04710_consen 407 V 407 (416)
T ss_dssp -
T ss_pred e
Confidence 3
No 202
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=38.54 E-value=11 Score=38.19 Aligned_cols=48 Identities=23% Similarity=0.523 Sum_probs=29.9
Q ss_pred CccccccccccCCC---c----eeEeCCCCccccHHHHHHH--H--------cCCCCccccccccc
Q 024682 122 LDCAVCLSEFEDNE---N----GRVLPKCRHVFHVDCIDMW--F--------QSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~~~---~----~~~lp~C~H~fh~~Ci~~w--l--------~~~~~CP~Cr~~v~ 170 (264)
..|-||-|+=.+.+ . +-... |.-.||..|-... | ..-+.|-+|+..+.
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~-CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSG-CKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred ceeeeecccCCccccccccceeccccc-chhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 46999998833322 0 11122 7778999998653 1 22346999988663
No 203
>PHA02692 hypothetical protein; Provisional
Probab=38.44 E-value=86 Score=22.43 Aligned_cols=15 Identities=13% Similarity=0.210 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 024682 40 LFVVVFILVCFHSYA 54 (264)
Q Consensus 40 L~~vv~l~v~l~~~~ 54 (264)
+++++++++++++|.
T Consensus 53 ~~~~~~~vll~flYL 67 (70)
T PHA02692 53 LIAAAIGVLLCFHYL 67 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444444
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.20 E-value=63 Score=33.46 Aligned_cols=49 Identities=29% Similarity=0.583 Sum_probs=32.4
Q ss_pred CCCCCccccccccccCC--------Cc-eeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 118 PKEPLDCAVCLSEFEDN--------EN-GRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~--------~~-~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...+..|+-|...|... +. .-+.|.|.|..|..=|.+ ...||+|...+.
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 34567788888877432 11 123456999998877643 578999987653
No 205
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=37.96 E-value=30 Score=26.63 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=27.9
Q ss_pred CCCccccccccccCCCce----eEeCCC---CccccHHHHHHHHcC---------CCCcccccc
Q 024682 120 EPLDCAVCLSEFEDNENG----RVLPKC---RHVFHVDCIDMWFQS---------HSNCPLCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~----~~lp~C---~H~fh~~Ci~~wl~~---------~~~CP~Cr~ 167 (264)
....|..|...-.+.... ...+.| .=.||..||..++.. .-.||.||.
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 345577776643322100 012336 567999999888742 235999987
No 206
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=36.86 E-value=36 Score=35.29 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 31 KIMFCSVILLFVVVFILVCFHSYASWLRY 59 (264)
Q Consensus 31 ~i~l~~iilL~~vv~l~v~l~~~~~~~~~ 59 (264)
.++++++..+.+++++++|+.+|+.+.++
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc 301 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKC 301 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 33444444344444444444455444433
No 207
>PRK01844 hypothetical protein; Provisional
Probab=36.76 E-value=97 Score=22.33 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 37 VILLFVVVFILVCFHS 52 (264)
Q Consensus 37 iilL~~vv~l~v~l~~ 52 (264)
++++++++.+++.+++
T Consensus 9 l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 9 VGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 208
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=36.42 E-value=53 Score=24.23 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc
Q 024682 50 FHSYASWLRYRH 61 (264)
Q Consensus 50 l~~~~~~~~~~~ 61 (264)
+.-|.+..+.++
T Consensus 27 ~ieYrk~~rqrk 38 (81)
T PF00558_consen 27 YIEYRKIKRQRK 38 (81)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 344444333333
No 209
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=36.13 E-value=7.5 Score=35.53 Aligned_cols=35 Identities=29% Similarity=0.689 Sum_probs=21.9
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS 158 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~ 158 (264)
.|.+|+++|..+....... |-.+||..|+..|+..
T Consensus 216 vC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTT 250 (288)
T ss_pred ecHHHHHHHhcccccchhh-cccccccccccccccc
Confidence 6777777776543333443 5557777777777653
No 210
>PHA02902 putative IMV membrane protein; Provisional
Probab=35.41 E-value=52 Score=23.19 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.0
Q ss_pred CCCCCHHHHhhCCce
Q 024682 95 HQALDLSILKRIPAF 109 (264)
Q Consensus 95 ~~gl~~~~i~~lp~~ 109 (264)
...+..+.+++|..+
T Consensus 51 ~D~lTpDQirAlHrl 65 (70)
T PHA02902 51 KDSLTPDQIKALHRL 65 (70)
T ss_pred hccCCHHHHHHHHHH
Confidence 455666777666543
No 211
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=35.16 E-value=79 Score=19.57 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024682 34 FCSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 34 l~~iilL~~vv~l~v~l~~~ 53 (264)
++.-+++..++++++.++++
T Consensus 2 ~~LK~~Vy~vV~ffv~LFif 21 (36)
T PF02532_consen 2 LTLKIFVYTVVIFFVSLFIF 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeehhhHHHHHHHHhc
Confidence 34444555555555555443
No 212
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=34.92 E-value=62 Score=24.29 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.1
Q ss_pred cccCCCCCcccC
Q 024682 8 TLTAPSGLDQIQ 19 (264)
Q Consensus 8 ~~~~~~~~~~~~ 19 (264)
++++-....+.+
T Consensus 13 sLtst~~~p~~~ 24 (94)
T PF05393_consen 13 SLTSTTETPVVS 24 (94)
T ss_pred eeeeecccceeE
Confidence 334444444444
No 213
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=34.69 E-value=15 Score=28.08 Aligned_cols=19 Identities=32% Similarity=0.202 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024682 32 IMFCSVILLFVVVFILVCF 50 (264)
Q Consensus 32 i~l~~iilL~~vv~l~v~l 50 (264)
.+.++++.+..++.+++++
T Consensus 60 ~~~iili~lls~v~IlVil 78 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVIL 78 (101)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 3555555554444444443
No 214
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=34.56 E-value=59 Score=23.81 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=19.9
Q ss_pred CCCccccccccccCCC--ceeEe-CCCCccccHHHHHHHH-cCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNE--NGRVL-PKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~--~~~~l-p~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~v~~ 171 (264)
....|.||-+++.... .+.+. -.|+--.|..|..-=. ..++.||.|+.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4567999999874332 22221 1366668888986544 457789999987753
No 215
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.16 E-value=36 Score=19.69 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=10.9
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHH
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCI 152 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci 152 (264)
.|.+|-..... .....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47888887655 345555569999999885
No 216
>PLN02436 cellulose synthase A
Probab=33.92 E-value=49 Score=35.57 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=33.1
Q ss_pred CCccccccccccCCC--ceeE-eCCCCccccHHHHHHHH-cCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNE--NGRV-LPKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~--~~~~-lp~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~v~ 170 (264)
...|.||-+++.... ++.+ ...|+--.|..|.+-=- +.++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 457999999973221 2232 22366669999985433 34677999999876
No 217
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.92 E-value=1e+02 Score=21.02 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 024682 43 VVFILVCFHSYAS 55 (264)
Q Consensus 43 vv~l~v~l~~~~~ 55 (264)
++..++.+..+.+
T Consensus 33 llg~l~~~~~~~~ 45 (68)
T PF06305_consen 33 LLGWLLSLPSRLR 45 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 218
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=33.49 E-value=1.3e+02 Score=20.79 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=5.2
Q ss_pred HHHHHHHHhc
Q 024682 52 SYASWLRYRH 61 (264)
Q Consensus 52 ~~~~~~~~~~ 61 (264)
++.|+.....
T Consensus 25 l~IRri~~~s 34 (58)
T PF13314_consen 25 LFIRRILINS 34 (58)
T ss_pred HHHHHHHHhc
Confidence 3456555543
No 219
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=33.24 E-value=21 Score=32.99 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024682 38 ILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 38 ilL~~vv~l~v~l~~~~~~~ 57 (264)
|+.++++.++.++...+.||
T Consensus 203 Iv~~cvaG~aAliva~~cW~ 222 (341)
T PF06809_consen 203 IVVCCVAGAAALIVAGYCWY 222 (341)
T ss_pred hHHHHHHHHHHHHHhhheEE
Confidence 33333333333333334444
No 220
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.22 E-value=14 Score=33.76 Aligned_cols=27 Identities=22% Similarity=0.639 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Q 024682 27 VLNGKIMFCSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 27 ~~~~~i~l~~iilL~~vv~l~v~l~~~ 53 (264)
.+.|-.++..++++++.+.+++.+++|
T Consensus 99 tLtGQ~LF~Gi~~l~l~~lLaL~vW~Y 125 (381)
T PF05297_consen 99 TLTGQTLFVGIVILFLCCLLALGVWFY 125 (381)
T ss_dssp ---------------------------
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555
No 221
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=33.19 E-value=22 Score=31.59 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=33.8
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCC--ccc--ccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSN--CPL--CRAPV 169 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~--CP~--Cr~~v 169 (264)
...|+|-+..+..+ .+..+|+|.|-.+-|...++.-.+ ||. |.+.+
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~ 238 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKE 238 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecchhhcchhe
Confidence 35799999988777 344569999999999999875444 663 54433
No 222
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.59 E-value=74 Score=29.27 Aligned_cols=10 Identities=20% Similarity=0.105 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 024682 51 HSYASWLRYR 60 (264)
Q Consensus 51 ~~~~~~~~~~ 60 (264)
++++.|+..|
T Consensus 271 IMvIIYLILR 280 (299)
T PF02009_consen 271 IMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 223
>PHA03049 IMV membrane protein; Provisional
Probab=32.40 E-value=74 Score=22.54 Aligned_cols=20 Identities=15% Similarity=0.511 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024682 38 ILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 38 ilL~~vv~l~v~l~~~~~~~ 57 (264)
++|+++.+.++.+++|..+-
T Consensus 5 ~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555565433
No 224
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.37 E-value=21 Score=21.32 Aligned_cols=20 Identities=30% Similarity=0.820 Sum_probs=11.7
Q ss_pred CCccccHHHHHHHHcCCCCccccccc
Q 024682 143 CRHVFHVDCIDMWFQSHSNCPLCRAP 168 (264)
Q Consensus 143 C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 168 (264)
|||++-..- ....||+|..+
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------CCCcCcCCCCc
Confidence 666554322 34579999663
No 225
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=32.08 E-value=27 Score=31.29 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=30.9
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC--Ccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS--NCPLC 165 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~C 165 (264)
..|+|=...+..| .+..+|||+|-.+=|...+.... .||+=
T Consensus 177 ~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 177 NRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred ccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 5699888888777 34456999999999988876533 37763
No 226
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=32.03 E-value=14 Score=34.60 Aligned_cols=50 Identities=22% Similarity=0.463 Sum_probs=27.0
Q ss_pred CCCCccccccccccCCCceeEeC--CCCccc--------cHHHHHHHH-----cCCCCcccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLP--KCRHVF--------HVDCIDMWF-----QSHSNCPLCRAPV 169 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~f--------h~~Ci~~wl-----~~~~~CP~Cr~~v 169 (264)
..++-|++|-+.+.-- .-.+|+ .|+-.| |+.|+..-- ..++.||.||-.-
T Consensus 13 dl~ElCPVCGDkVSGY-HYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQK 77 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQK 77 (475)
T ss_pred ccccccccccCccccc-eeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHH
Confidence 3456799999886432 223444 244334 334443321 1245799998643
No 227
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=31.53 E-value=23 Score=32.25 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=13.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHH
Q 024682 24 SSYVLNGKIMFCSVILLFVVVFILVCF 50 (264)
Q Consensus 24 ~~~~~~~~i~l~~iilL~~vv~l~v~l 50 (264)
+.-.++.++|-+++++.++++++++.+
T Consensus 269 ss~S~s~~l~piil~IG~vl~i~~Ig~ 295 (305)
T PF04639_consen 269 SSKSVSDSLLPIILIIGGVLLIVFIGY 295 (305)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 444556666655555554444444443
No 228
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=31.52 E-value=24 Score=23.62 Aligned_cols=19 Identities=32% Similarity=0.693 Sum_probs=14.5
Q ss_pred eeEeCCCCccccHHHHHHH
Q 024682 137 GRVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 137 ~~~lp~C~H~fh~~Ci~~w 155 (264)
...-+.|+|.||..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3344458999999998888
No 229
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=31.48 E-value=13 Score=30.70 Aligned_cols=23 Identities=35% Similarity=0.863 Sum_probs=15.7
Q ss_pred CCccccHHHHHHHHcC-----------CCCccccccccc
Q 024682 143 CRHVFHVDCIDMWFQS-----------HSNCPLCRAPVQ 170 (264)
Q Consensus 143 C~H~fh~~Ci~~wl~~-----------~~~CP~Cr~~v~ 170 (264)
|+|.| +.||.+ .-+||+|-..-.
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 57888 579854 237999966443
No 230
>PHA03030 hypothetical protein; Provisional
Probab=31.16 E-value=28 Score=26.84 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.3
Q ss_pred HHHHHH
Q 024682 50 FHSYAS 55 (264)
Q Consensus 50 l~~~~~ 55 (264)
+++|.+
T Consensus 17 iffYI~ 22 (122)
T PHA03030 17 IFFYIR 22 (122)
T ss_pred HHHHhe
Confidence 333433
No 231
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=31.03 E-value=25 Score=20.45 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=6.3
Q ss_pred CchhhHHHHhhh
Q 024682 251 PGNRVLTLKRIW 262 (264)
Q Consensus 251 p~~r~~s~~r~~ 262 (264)
|+.|-.||.|+|
T Consensus 1 P~aRK~SLqRFL 12 (27)
T PF09425_consen 1 PIARKASLQRFL 12 (27)
T ss_dssp -----HHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 678999999987
No 232
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.82 E-value=7.9 Score=34.95 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=35.1
Q ss_pred CCccccccccccCCC--c-eeEeCC-------CCccccHHHHHHHHcCC-CCccccccc
Q 024682 121 PLDCAVCLSEFEDNE--N-GRVLPK-------CRHVFHVDCIDMWFQSH-SNCPLCRAP 168 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~--~-~~~lp~-------C~H~fh~~Ci~~wl~~~-~~CP~Cr~~ 168 (264)
...|.||...|...+ . .+++.. |+|..+..|++.-+... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 367999999998432 2 222323 99999999999987543 579999875
No 233
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.66 E-value=34 Score=31.12 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024682 25 SYVLNGKIMFCSVILLFVVVFILVCFHSYASWLRYR 60 (264)
Q Consensus 25 ~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~~~ 60 (264)
.+-..|.|++|++.+-+.++++++++-++..+++++
T Consensus 222 ~~l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred ccccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456666666666666666666555555444444
No 234
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.61 E-value=54 Score=23.72 Aligned_cols=45 Identities=22% Similarity=0.602 Sum_probs=28.8
Q ss_pred cccccccccCCCce-eEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 124 CAVCLSEFEDNENG-RVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 124 C~ICl~~~~~~~~~-~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
|--|-.++.....- ++-. -.|.||.+|...-| +..||.|-..+..
T Consensus 8 CECCDrDLpp~s~dA~ICt-fEcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 8 CECCDRDLPPDSTDARICT-FECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred CcccCCCCCCCCCceeEEE-EeeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 55566665443322 2222 34899999998754 5789999887754
No 235
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=30.50 E-value=1.3e+02 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024682 31 KIMFCSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 31 ~i~l~~iilL~~vv~l~v~l~~~ 53 (264)
++|+....++|+++.++++++-+
T Consensus 12 ~lMvlGMg~VfvFL~lLI~~i~~ 34 (82)
T PRK02919 12 TLMFLGMGFVLAFLFLLIFAIRG 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444444444444333333
No 236
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=30.23 E-value=1.5e+02 Score=21.83 Aligned_cols=23 Identities=9% Similarity=0.477 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024682 31 KIMFCSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 31 ~i~l~~iilL~~vv~l~v~l~~~ 53 (264)
.++.++++++...++++++++++
T Consensus 42 d~l~a~~iI~~~gv~~~~ly~ff 64 (84)
T PRK13718 42 DMLAAVFVILYSGVLLFILYFFF 64 (84)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 44666666665555555444433
No 237
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=29.77 E-value=86 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=17.6
Q ss_pred HhhCCceecCCCCCCCCCCCcccccccc
Q 024682 103 LKRIPAFVYSPNIEDPKEPLDCAVCLSE 130 (264)
Q Consensus 103 i~~lp~~~~~~~~~~~~~~~~C~ICl~~ 130 (264)
+++.-+++|+.-. +...+...++|+=+
T Consensus 80 ~~kvgvvRYnAF~-dmGg~LSFslAlLD 106 (151)
T PF14584_consen 80 VQKVGVVRYNAFE-DMGGDLSFSLALLD 106 (151)
T ss_pred cceEEEEEccCcc-cccccceeeeEEEe
Confidence 4556677777753 44566778888766
No 238
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.73 E-value=12 Score=23.77 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=15.1
Q ss_pred CCCCccccHHHHHHHHcCCCCcccccc
Q 024682 141 PKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 141 p~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
..|||.|-...-..= .....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 358888765431111 22446999987
No 239
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=29.41 E-value=60 Score=26.18 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.6
Q ss_pred ccCCCCCCC
Q 024682 17 QIQNPSASS 25 (264)
Q Consensus 17 ~~~~~~~~~ 25 (264)
+++-|.+-+
T Consensus 7 DI~~P~~vs 15 (146)
T PF14316_consen 7 DIHLPPPVS 15 (146)
T ss_pred CCCCCCCCC
Confidence 344444433
No 240
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=29.04 E-value=89 Score=29.37 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=4.6
Q ss_pred cccchhHHHHHH
Q 024682 26 YVLNGKIMFCSV 37 (264)
Q Consensus 26 ~~~~~~i~l~~i 37 (264)
|.+-..+.++++
T Consensus 35 ~~ie~sl~~~~~ 46 (398)
T PRK10747 35 YNIETSVTGLAI 46 (398)
T ss_pred EEEEehHHHHHH
Confidence 333333333333
No 241
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.01 E-value=19 Score=23.98 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=5.8
Q ss_pred CcccccccccC
Q 024682 161 NCPLCRAPVQL 171 (264)
Q Consensus 161 ~CP~Cr~~v~~ 171 (264)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999998753
No 242
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=28.99 E-value=38 Score=26.44 Aligned_cols=47 Identities=26% Similarity=0.455 Sum_probs=28.2
Q ss_pred CCCccccccccccCCC-ceeEeCCCCccccHHHHHHHHcCCC--Ccccccc
Q 024682 120 EPLDCAVCLSEFEDNE-NGRVLPKCRHVFHVDCIDMWFQSHS--NCPLCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~Cr~ 167 (264)
+...|++|...|..-. ....-..|+|.+|..|-.. ..... .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 4568999999874332 2245556999999999644 11112 3888865
No 243
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=28.84 E-value=65 Score=31.25 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=16.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 26 YVLNGKIMFCSVILLFVVVFILVCFHSYASW 56 (264)
Q Consensus 26 ~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~ 56 (264)
|.-..++++..++.|..+.++++.++.+..|
T Consensus 554 yvTPS~lIl~s~~al~gvC~~il~ii~~Lh~ 584 (606)
T KOG4550|consen 554 YVTPSNLILLSAIALIGVCVFILAIIGILHW 584 (606)
T ss_pred EEChHHHHHHHHHHHHHHHHHHHHHHhheeh
Confidence 3344566666666665555555444444333
No 244
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=27.90 E-value=64 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=10.3
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 024682 29 NGKIMFCSVILLFVVVFIL 47 (264)
Q Consensus 29 ~~~i~l~~iilL~~vv~l~ 47 (264)
.+++|+++++++++..++.
T Consensus 22 ~~Wl~~i~~~~v~~~t~~~ 40 (97)
T PF04834_consen 22 NYWLYAIGIVLVFCSTFFS 40 (97)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666665555554444
No 245
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=27.82 E-value=89 Score=21.36 Aligned_cols=10 Identities=10% Similarity=0.560 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 024682 45 FILVCFHSYA 54 (264)
Q Consensus 45 ~l~v~l~~~~ 54 (264)
++++++..|+
T Consensus 10 ~lvv~LYgY~ 19 (56)
T TIGR02736 10 LLVIFLYAYI 19 (56)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 246
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=27.62 E-value=95 Score=19.14 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 38 ILLFVVVFILVCFHSY 53 (264)
Q Consensus 38 ilL~~vv~l~v~l~~~ 53 (264)
.+||+.+-.+.++++|
T Consensus 11 t~Lfi~iPt~FLlilY 26 (35)
T PRK04989 11 SLLFVLVPTVFLIILY 26 (35)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444444
No 247
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=27.42 E-value=1.1e+02 Score=25.53 Aligned_cols=39 Identities=3% Similarity=-0.073 Sum_probs=15.3
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 21 PSASSYVLNGKIMFCSVILLFVVVFILVCFHSYASWLRY 59 (264)
Q Consensus 21 ~~~~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~~ 59 (264)
+++..-.+..--++.+++..+++.+++-++..+.++.++
T Consensus 124 ~f~p~vplt~~gi~~g~vg~l~~~~l~~~l~~l~~~~~r 162 (167)
T PF11157_consen 124 NFSPAVPLTPEGIVFGLVGALLGALLVELLLGLLRRPFR 162 (167)
T ss_pred hCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444433444333333333333333333444433
No 248
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=27.12 E-value=1.2e+02 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=16.8
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHH
Q 024682 20 NPSASSYVLNGKIMFCSVILLFVVVF 45 (264)
Q Consensus 20 ~~~~~~~~~~~~i~l~~iilL~~vv~ 45 (264)
|+-.+.+++++.+|-+++++|++.++
T Consensus 69 D~VDsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 69 DYVDSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHH
Confidence 34457778888777666666655554
No 249
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.98 E-value=85 Score=29.56 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.5
Q ss_pred cccchhH
Q 024682 26 YVLNGKI 32 (264)
Q Consensus 26 ~~~~~~i 32 (264)
|.+-..+
T Consensus 35 ~~ie~s~ 41 (409)
T TIGR00540 35 RIIEMSI 41 (409)
T ss_pred EEEEeeH
Confidence 3333333
No 250
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=26.85 E-value=78 Score=34.15 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=33.0
Q ss_pred CCccccccccccCCC--ceeE-eCCCCccccHHHHHH-HHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNE--NGRV-LPKCRHVFHVDCIDM-WFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~--~~~~-lp~C~H~fh~~Ci~~-wl~~~~~CP~Cr~~v~ 170 (264)
...|.||-+++.... ++.+ .-.|+--.|..|.+- .-+.++.||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 457999999974332 2222 223556699999843 2245778999999876
No 251
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.76 E-value=35 Score=31.54 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCccccccccccCCCceeEeCC--CCccccHHHHHHHHcCCCCcccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPK--CRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~--C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
....|+||-..=... .++.-.. =.|.+|..|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 457899998772111 0000011 1245666788888878888999964
No 252
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.43 E-value=24 Score=25.27 Aligned_cols=40 Identities=25% Similarity=0.575 Sum_probs=21.0
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..|+.|..++... =+|.+|..|-.. +.....||.|..++.
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHH
Confidence 4689998885443 256666667543 344567999988774
No 253
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.41 E-value=1.5e+02 Score=20.94 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024682 36 SVILLFVVVFILVCFHS 52 (264)
Q Consensus 36 ~iilL~~vv~l~v~l~~ 52 (264)
.++.+.+|+++++++++
T Consensus 8 ~i~Gm~iVF~~L~lL~~ 24 (79)
T PF04277_consen 8 MIIGMGIVFLVLILLIL 24 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 254
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=26.37 E-value=66 Score=29.84 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=40.9
Q ss_pred HhhCCceecCCCCCC-CCCCCccccccccccCCC----------ceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 103 LKRIPAFVYSPNIED-PKEPLDCAVCLSEFEDNE----------NGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 103 i~~lp~~~~~~~~~~-~~~~~~C~ICl~~~~~~~----------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
---+|...+....+. ......|-.|...|..+. .-+..+.|+..||.+|-...-+.-..|+.|..
T Consensus 343 hhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~ 418 (421)
T COG5151 343 HHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCEL 418 (421)
T ss_pred HhhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcC
Confidence 344566666554222 233467999999886542 22334458889999996655455567999965
No 255
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=26.22 E-value=1.3e+02 Score=27.19 Aligned_cols=13 Identities=23% Similarity=0.301 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 024682 32 IMFCSVILLFVVV 44 (264)
Q Consensus 32 i~l~~iilL~~vv 44 (264)
++...+++|+++.
T Consensus 230 l~~~~~i~L~~~~ 242 (262)
T PF11884_consen 230 LLRISMIALVLAN 242 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 256
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=26.20 E-value=2e+02 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 33 MFCSVILLFVVVFILVCFHSYASWLRY 59 (264)
Q Consensus 33 ~l~~iilL~~vv~l~v~l~~~~~~~~~ 59 (264)
++-++++-++.++++..+++..|+..+
T Consensus 9 YlqgL~ls~i~V~~~~~~wi~~Ra~~~ 35 (72)
T PF13268_consen 9 YLQGLLLSSILVLLVSGIWILWRALRK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444444433
No 257
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.98 E-value=41 Score=33.49 Aligned_cols=15 Identities=20% Similarity=0.075 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q 024682 46 ILVCFHSYASWLRYR 60 (264)
Q Consensus 46 l~v~l~~~~~~~~~~ 60 (264)
+++++|++.+||+..
T Consensus 24 ilv~if~~~~~y~~a 38 (548)
T COG2268 24 ILVLIFFGKRFYIIA 38 (548)
T ss_pred HHHHHHHhheeEEec
Confidence 333333333444433
No 258
>PRK05978 hypothetical protein; Provisional
Probab=25.89 E-value=50 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.605 Sum_probs=20.7
Q ss_pred CCCC--ccccHHHHHHHHcCCCCcccccccccCCC
Q 024682 141 PKCR--HVFHVDCIDMWFQSHSNCPLCRAPVQLDI 173 (264)
Q Consensus 141 p~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~~ 173 (264)
|.|| |.|+ .+++.+..||.|-.++....
T Consensus 37 P~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 37 PACGEGKLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred CCCCCCcccc-----cccccCCCccccCCccccCC
Confidence 4454 6675 67788999999998886543
No 259
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=25.85 E-value=25 Score=23.31 Aligned_cols=37 Identities=24% Similarity=0.608 Sum_probs=20.1
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHc--CCCCccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ--SHSNCPLCRAP 168 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~ 168 (264)
...|+.|-+.|... .| +.|. .+.=.. +...||+|...
T Consensus 2 ~f~CP~C~~~~~~~----~L--~~H~-----~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL--VEHC-----EDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH----HH--HHHH-----HhHCcCCCCCccCCCchhh
Confidence 35799998865443 23 3332 222111 23469999764
No 260
>PRK12495 hypothetical protein; Provisional
Probab=25.77 E-value=2.4e+02 Score=24.84 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=8.5
Q ss_pred CCcccccccccC
Q 024682 160 SNCPLCRAPVQL 171 (264)
Q Consensus 160 ~~CP~Cr~~v~~ 171 (264)
..||.|...+..
T Consensus 59 ~~Cp~CQ~~~~~ 70 (226)
T PRK12495 59 EFCPTCQQPVTE 70 (226)
T ss_pred eECCCCCCcccc
Confidence 459999876653
No 261
>PLN02400 cellulose synthase
Probab=25.68 E-value=72 Score=34.39 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCCccccccccccCCC--ceeEe-CCCCccccHHHHHH-HHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNE--NGRVL-PKCRHVFHVDCIDM-WFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~--~~~~l-p~C~H~fh~~Ci~~-wl~~~~~CP~Cr~~v~ 170 (264)
....|.||-+++.... ++.+. -.|+--.|..|.+- .-+.++.||.||....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3457999999974332 22222 23566689999843 1234678999999886
No 262
>PF15069 FAM163: FAM163 family
Probab=25.62 E-value=37 Score=27.77 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=4.6
Q ss_pred CCCcccc
Q 024682 159 HSNCPLC 165 (264)
Q Consensus 159 ~~~CP~C 165 (264)
+..||.|
T Consensus 91 ~~~CptC 97 (143)
T PF15069_consen 91 RSYCPTC 97 (143)
T ss_pred CCcCCCC
Confidence 4557777
No 263
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.59 E-value=2.1e+02 Score=20.51 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 024682 37 VILLFVVVFILVC 49 (264)
Q Consensus 37 iilL~~vv~l~v~ 49 (264)
+++|++++.+++.
T Consensus 9 ~ivl~ll~G~~~G 21 (71)
T COG3763 9 LIVLALLAGLIGG 21 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3333443444333
No 264
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=25.45 E-value=23 Score=32.37 Aligned_cols=8 Identities=38% Similarity=0.455 Sum_probs=0.0
Q ss_pred cccccccc
Q 024682 123 DCAVCLSE 130 (264)
Q Consensus 123 ~C~ICl~~ 130 (264)
..++-|.+
T Consensus 209 ~~P~Ilke 216 (290)
T PF05454_consen 209 KSPVILKE 216 (290)
T ss_dssp --------
T ss_pred CCCeeecc
Confidence 34444444
No 265
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=25.45 E-value=96 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=11.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 024682 26 YVLNGKIMFCSVILLFVVVFILVC 49 (264)
Q Consensus 26 ~~~~~~i~l~~iilL~~vv~l~v~ 49 (264)
|..+..+--+.|++.|+++++++.
T Consensus 43 y~~sh~WRN~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 43 YSYSHRWRNFGILIAFWIFFIVLT 66 (103)
T ss_pred ccccchhhhHHHHHHHHHHHHHHH
Confidence 333444444555555554444433
No 266
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.14 E-value=58 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=25.7
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHH
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 155 (264)
-.|.||-..+..++.-...+ .-..|++|+..=
T Consensus 7 wkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s 38 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK--KGSVHYECLAES 38 (103)
T ss_pred eeEeeeCCEeeeccEEEEee--CCcchHHHHHHH
Confidence 57999999999998777765 445899998764
No 267
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=24.52 E-value=6.7 Score=26.40 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=16.8
Q ss_pred Ccccc--ccccccCCCce----eEeCCCCccccHHHHHHH
Q 024682 122 LDCAV--CLSEFEDNENG----RVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 122 ~~C~I--Cl~~~~~~~~~----~~lp~C~H~fh~~Ci~~w 155 (264)
..|+- |-..+...+.. ..-+.|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 35765 66665544322 223348888888887766
No 268
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.45 E-value=45 Score=25.28 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=21.0
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHH
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM 154 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 154 (264)
....|.||......--... -+.|...||..|...
T Consensus 54 ~~~~C~iC~~~~G~~i~C~-~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCS-HPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcC-CCCCCcCCCHHHHHH
Confidence 3567999998722111111 123777999999865
No 269
>CHL00080 psbM photosystem II protein M
Probab=24.24 E-value=1.1e+02 Score=18.67 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 38 ILLFVVVFILVCFHSY 53 (264)
Q Consensus 38 ilL~~vv~l~v~l~~~ 53 (264)
.+||+.+--..++++|
T Consensus 11 t~LFi~iPt~FLlily 26 (34)
T CHL00080 11 TALFILVPTAFLLIIY 26 (34)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444444444444
No 270
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=24.14 E-value=1.5e+02 Score=17.77 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 024682 48 VCFHSYA 54 (264)
Q Consensus 48 v~l~~~~ 54 (264)
.++++|+
T Consensus 21 FLiilyv 27 (31)
T PF05151_consen 21 FLIILYV 27 (31)
T ss_dssp HHHHHHH
T ss_pred HHhheEe
Confidence 3333443
No 271
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=23.93 E-value=3.6e+02 Score=21.68 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=6.1
Q ss_pred CccCCCCCHHH
Q 024682 92 PHAHQALDLSI 102 (264)
Q Consensus 92 ~~~~~gl~~~~ 102 (264)
.-.+.||++..
T Consensus 76 ~D~R~GLD~~a 86 (128)
T PF09435_consen 76 GDSRAGLDDAA 86 (128)
T ss_pred CCcccCcCHHH
Confidence 34466777543
No 272
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=23.92 E-value=1.2e+02 Score=27.28 Aligned_cols=8 Identities=50% Similarity=0.497 Sum_probs=4.0
Q ss_pred CCCCCCcc
Q 024682 2 MDSNSTTL 9 (264)
Q Consensus 2 ~~~~~~~~ 9 (264)
|+.|++|.
T Consensus 1 m~~~~~s~ 8 (264)
T COG3087 1 MRKNSTSR 8 (264)
T ss_pred CcccccCc
Confidence 44555544
No 273
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.92 E-value=51 Score=33.75 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=15.1
Q ss_pred EeCCCCccccHHHHHHHHcCCCCccccc
Q 024682 139 VLPKCRHVFHVDCIDMWFQSHSNCPLCR 166 (264)
Q Consensus 139 ~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr 166 (264)
..| -|.+||.+|-..=-.....|-+|=
T Consensus 43 qVP-tGpWfCrKCesqeraarvrCeLCP 69 (900)
T KOG0956|consen 43 QVP-TGPWFCRKCESQERAARVRCELCP 69 (900)
T ss_pred ecC-CCchhhhhhhhhhhhccceeeccc
Confidence 344 677777777544322334576663
No 274
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=23.54 E-value=1.4e+02 Score=22.13 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=14.9
Q ss_pred CCCCcccCCCCCCCcccchhHHHHHHHHHHHHHH
Q 024682 12 PSGLDQIQNPSASSYVLNGKIMFCSVILLFVVVF 45 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~l~~iilL~~vv~ 45 (264)
++..+..|= +.+.-.+..++=-++++.+.++
T Consensus 14 ~si~d~DQL---~qlVsrN~sfirdFvLVic~~l 44 (84)
T PF06143_consen 14 NSILDYDQL---EQLVSRNRSFIRDFVLVICCFL 44 (84)
T ss_pred CCCCcHHHH---HHHHHhChHHHHHHHHHHHHHH
Confidence 444444333 3366566666655544444333
No 275
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=45 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.700 Sum_probs=16.1
Q ss_pred CCCCCCcccccccc-ccCCCceeEeCCCCccc
Q 024682 117 DPKEPLDCAVCLSE-FEDNENGRVLPKCRHVF 147 (264)
Q Consensus 117 ~~~~~~~C~ICl~~-~~~~~~~~~lp~C~H~f 147 (264)
...++..|.||+.- |.++ |||.-
T Consensus 61 Gv~ddatC~IC~KTKFADG--------~GH~C 84 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG--------CGHNC 84 (169)
T ss_pred ccCcCcchhhhhhcccccc--------cCccc
Confidence 45677899999864 5454 88763
No 276
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.43 E-value=1.4e+02 Score=26.11 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 024682 33 MFCSVILLFVV 43 (264)
Q Consensus 33 ~l~~iilL~~v 43 (264)
|++.+|++.++
T Consensus 130 mLIClIIIAVL 140 (227)
T PF05399_consen 130 MLICLIIIAVL 140 (227)
T ss_pred HHHHHHHHHHH
Confidence 44434333333
No 277
>PRK06287 cobalt transport protein CbiN; Validated
Probab=23.42 E-value=1.5e+02 Score=22.83 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=3.7
Q ss_pred CCcccch
Q 024682 24 SSYVLNG 30 (264)
Q Consensus 24 ~~~~~~~ 30 (264)
.+|.+.+
T Consensus 67 pDY~i~g 73 (107)
T PRK06287 67 PDYSIPG 73 (107)
T ss_pred CCCCCCC
Confidence 4555555
No 278
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=23.36 E-value=1.2e+02 Score=32.64 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=33.8
Q ss_pred CCCccccccccccCCC--ceeE-eCCCCccccHHHHHHHH-cCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNE--NGRV-LPKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~--~~~~-lp~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~v~ 170 (264)
....|.||-+++.... ++.+ .-.|+--.|..|.+-=. +.++.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4567999999974332 2222 22366669999985433 44677999999876
No 279
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=23.22 E-value=1.5e+02 Score=26.50 Aligned_cols=9 Identities=11% Similarity=0.652 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024682 33 MFCSVILLF 41 (264)
Q Consensus 33 ~l~~iilL~ 41 (264)
+...+++++
T Consensus 35 ~~~~~~~~~ 43 (247)
T COG1622 35 ILSTLLMLV 43 (247)
T ss_pred HHHHHHHHH
Confidence 333333333
No 280
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.82 E-value=2.7e+02 Score=25.86 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=5.7
Q ss_pred HHHHHHHHhccc
Q 024682 52 SYASWLRYRHRH 63 (264)
Q Consensus 52 ~~~~~~~~~~~~ 63 (264)
+..||+...+|+
T Consensus 246 l~~Rwl~v~~RR 257 (340)
T PF12794_consen 246 LILRWLLVARRR 257 (340)
T ss_pred HHHHHHHHHHHH
Confidence 334555554443
No 281
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.79 E-value=37 Score=28.18 Aligned_cols=43 Identities=23% Similarity=0.504 Sum_probs=27.8
Q ss_pred cccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 126 VCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 126 ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
||+.-=...+....-|.=.+.||.+|..+-+ ..||.|..++..
T Consensus 9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG 51 (158)
T PF10083_consen 9 ICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRG 51 (158)
T ss_pred HccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCC
Confidence 5665444443333334345779999988765 369999998864
No 282
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=22.60 E-value=2.4e+02 Score=24.81 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=6.1
Q ss_pred HHHHHHHHHhc
Q 024682 51 HSYASWLRYRH 61 (264)
Q Consensus 51 ~~~~~~~~~~~ 61 (264)
+++.+|+.+|.
T Consensus 83 y~l~rwL~rR~ 93 (219)
T PRK13415 83 YALVKWLNKRN 93 (219)
T ss_pred HHHHHHHHHhc
Confidence 33356776654
No 283
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=22.38 E-value=27 Score=34.65 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=44.4
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
.....|.+|+......+....+-.|.|-++..|+..|=.....|+.|+..+.
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~ 309 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVR 309 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccc
Confidence 3456799999998887777777778899999999999888889999999885
No 284
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=22.17 E-value=2e+02 Score=17.67 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024682 34 FCSVILLFVVVFILVCFHS 52 (264)
Q Consensus 34 l~~iilL~~vv~l~v~l~~ 52 (264)
.++..+..+.++++++.|+
T Consensus 9 ~lan~lG~~~~~LIVlYH~ 27 (35)
T PF10215_consen 9 TLANFLGVAAMVLIVLYHF 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 285
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.12 E-value=42 Score=25.32 Aligned_cols=12 Identities=25% Similarity=0.999 Sum_probs=10.6
Q ss_pred cccHHHHHHHHc
Q 024682 146 VFHVDCIDMWFQ 157 (264)
Q Consensus 146 ~fh~~Ci~~wl~ 157 (264)
.||..|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 286
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=22.08 E-value=81 Score=30.16 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=22.9
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 024682 20 NPSASSYVLNGKIMFCSVILLFVVVFILVCF 50 (264)
Q Consensus 20 ~~~~~~~~~~~~i~l~~iilL~~vv~l~v~l 50 (264)
.++.+.....++++++++.+|++.++++++.
T Consensus 257 ~~~~~~ls~f~~~~~~~Fs~lg~~l~fF~lY 287 (420)
T PTZ00473 257 ANYKPDLSSFGKVLVISFSALGGSLSLFILY 287 (420)
T ss_pred ccCCCccCccceeehhhHHHHHHHHHHHHHH
Confidence 3444578888899999888888777776654
No 287
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=22.06 E-value=50 Score=33.05 Aligned_cols=36 Identities=22% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCCCccccccccccCC------C----ceeEeCCCCccccHHHHHHH
Q 024682 119 KEPLDCAVCLSEFEDN------E----NGRVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~------~----~~~~lp~C~H~fh~~Ci~~w 155 (264)
+....|+||.+.|..- . ....+. -|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 4456799999998532 0 112232 5889999998664
No 288
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=21.87 E-value=30 Score=27.16 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcc
Q 024682 51 HSYASWLRYRHR 62 (264)
Q Consensus 51 ~~~~~~~~~~~~ 62 (264)
+++..||++|+.
T Consensus 40 LliGCWYckRRS 51 (118)
T PF14991_consen 40 LLIGCWYCKRRS 51 (118)
T ss_dssp ------------
T ss_pred HHHhheeeeecc
Confidence 334556666554
No 289
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=21.69 E-value=50 Score=23.90 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=21.3
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHH
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM 154 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 154 (264)
...|.+|-......-... .+.|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~-~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCS-HPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEe-CCCCCcEEChHHHcc
Confidence 356999987632221222 334889999999754
No 290
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=21.64 E-value=2e+02 Score=21.26 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=14.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024682 24 SSYVLNGKIMFCSVILLFVVVFILVCFHSYASWLRYR 60 (264)
Q Consensus 24 ~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~~~ 60 (264)
..|.++-+-...+-+++-+ +++++-..+|.+++.+.
T Consensus 39 dtY~~sl~SFsSIW~iiN~-~il~~A~~vyLry~Cf~ 74 (82)
T PF03554_consen 39 DTYEPSLSSFSSIWAIINV-VILLCAFCVYLRYLCFQ 74 (82)
T ss_pred CEeeeeehHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4455554433333333333 33333344455555443
No 291
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=21.51 E-value=1.5e+02 Score=18.04 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 024682 39 LLFVVVFILVCFHSY 53 (264)
Q Consensus 39 lL~~vv~l~v~l~~~ 53 (264)
+||+.+-.+.++.+|
T Consensus 12 ~Lfi~iPt~FLiilY 26 (33)
T TIGR03038 12 LLFILVPTVFLLILY 26 (33)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334433333333444
No 292
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=21.51 E-value=1.9e+02 Score=21.80 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=6.8
Q ss_pred ccCCCCCCCcccc
Q 024682 17 QIQNPSASSYVLN 29 (264)
Q Consensus 17 ~~~~~~~~~~~~~ 29 (264)
|.|+..++...++
T Consensus 56 Q~Qds~RPrveig 68 (100)
T PF10954_consen 56 QVQDSGRPRVEIG 68 (100)
T ss_pred HHHhcCCCceEEe
Confidence 4555555555444
No 293
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.25 E-value=81 Score=24.28 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=25.5
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHH
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF 156 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 156 (264)
.|.||-.++..++.-....+ -..|..|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999887666653 568999987643
No 294
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=20.93 E-value=77 Score=26.04 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=14.0
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 024682 25 SYVLNGKIMFCSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 25 ~~~~~~~i~l~~iilL~~vv~l~v~l~~~ 53 (264)
+-++.|. .+.++++++++..+++++..+
T Consensus 60 gtAIaGI-VfgiVfimgvva~i~icvCmc 87 (155)
T PF10873_consen 60 GTAIAGI-VFGIVFIMGVVAGIAICVCMC 87 (155)
T ss_pred cceeeee-ehhhHHHHHHHHHHHHHHhhh
Confidence 4455544 444455555555555554433
No 295
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=20.61 E-value=1.7e+02 Score=21.32 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 024682 48 VCFHSYASWL 57 (264)
Q Consensus 48 v~l~~~~~~~ 57 (264)
+++.+|..+|
T Consensus 61 lL~a~Ya~fy 70 (79)
T PF15168_consen 61 LLLAFYAFFY 70 (79)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 296
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=20.48 E-value=1.4e+02 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=11.9
Q ss_pred CCHHHHhhCCceecCCCC
Q 024682 98 LDLSILKRIPAFVYSPNI 115 (264)
Q Consensus 98 l~~~~i~~lp~~~~~~~~ 115 (264)
..++.+-.+|.++|+.++
T Consensus 91 VtEqlaPffp~f~ynPkD 108 (175)
T COG4741 91 VTEQLAPFFPEFKYNPKD 108 (175)
T ss_pred hHhhhcccccCCCcCCcc
Confidence 345556667888887764
No 297
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.24 E-value=67 Score=31.33 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=31.7
Q ss_pred CCCCCCccccccccccCC-CceeEeCCCCccccHHHHHHHHcC--------CCCcccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDN-ENGRVLPKCRHVFHVDCIDMWFQS--------HSNCPLCRAPV 169 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~-~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~v 169 (264)
...-+..|.+|..-.... ..+...-+|+-.||..|.....+. ...|-.|....
T Consensus 164 ~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 344556799999654322 223333357788999998654321 11488887644
No 298
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=20.12 E-value=76 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 38 ILLFVVVFILVCFHSY 53 (264)
Q Consensus 38 ilL~~vv~l~v~l~~~ 53 (264)
.+||+.+--+.++++|
T Consensus 11 taLFi~iPT~FLlilY 26 (50)
T PRK14094 11 SLLFVGVPTIFLIGLF 26 (50)
T ss_pred HHHHHHHHHHHhhhee
Confidence 3444444444444444
No 299
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=20.06 E-value=1.1e+02 Score=29.32 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhcc
Q 024682 48 VCFHSYASWLRYRHR 62 (264)
Q Consensus 48 v~l~~~~~~~~~~~~ 62 (264)
+++.+|..|+.++++
T Consensus 35 l~ll~yl~~~CC~r~ 49 (406)
T PF04906_consen 35 LFLLIYLICRCCCRR 49 (406)
T ss_pred HHHHHHHHHHhhCCC
Confidence 344444444444433
No 300
>PTZ00046 rifin; Provisional
Probab=20.03 E-value=1.7e+02 Score=27.73 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhcc
Q 024682 48 VCFHSYASWLRYRHR 62 (264)
Q Consensus 48 v~l~~~~~~~~~~~~ 62 (264)
+++++.+.|+..|.|
T Consensus 327 IVLIMvIIYLILRYR 341 (358)
T PTZ00046 327 IVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333333444444433
Done!