Query 024682
Match_columns 264
No_of_seqs 283 out of 2085
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 12:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 2E-18 7E-23 129.4 8.8 83 88-171 7-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.7E-16 5.7E-21 114.4 4.4 68 103-172 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3.8E-15 1.3E-19 100.6 4.4 52 119-170 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 8.2E-15 2.8E-19 105.0 6.2 54 117-171 11-64 (74)
5 2ect_A Ring finger protein 126 99.5 1.1E-14 3.7E-19 105.4 5.4 55 117-172 11-65 (78)
6 2kiz_A E3 ubiquitin-protein li 99.5 1.6E-14 5.3E-19 102.1 6.0 55 117-172 10-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.5 2.6E-14 9E-19 104.7 4.7 51 120-170 14-75 (81)
8 1v87_A Deltex protein 2; ring- 99.4 2.3E-13 7.9E-18 105.4 6.0 52 120-172 24-95 (114)
9 2ecm_A Ring finger and CHY zin 99.4 1.3E-13 4.5E-18 92.8 4.0 50 120-170 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.4 1.7E-13 6E-18 96.2 3.9 53 117-170 11-67 (69)
11 3ng2_A RNF4, snurf, ring finge 99.4 1.8E-13 6.2E-18 96.9 3.4 54 118-172 7-64 (71)
12 3dpl_R Ring-box protein 1; ubi 99.4 4.1E-13 1.4E-17 103.4 4.9 50 120-170 36-100 (106)
13 2djb_A Polycomb group ring fin 99.4 7.7E-13 2.6E-17 94.3 5.5 53 117-172 11-63 (72)
14 2xeu_A Ring finger protein 4; 99.3 3.6E-13 1.2E-17 93.2 3.2 51 120-171 2-56 (64)
15 2d8s_A Cellular modulator of i 99.3 7.6E-13 2.6E-17 96.9 4.8 54 117-172 11-71 (80)
16 2ecn_A Ring finger protein 141 99.3 7.1E-13 2.4E-17 93.8 4.4 51 117-172 11-61 (70)
17 2d8t_A Dactylidin, ring finger 99.3 7.6E-13 2.6E-17 94.1 4.1 50 118-171 12-61 (71)
18 1chc_A Equine herpes virus-1 r 99.3 1.1E-12 3.7E-17 92.2 3.9 48 120-170 4-51 (68)
19 2ct2_A Tripartite motif protei 99.3 4E-12 1.4E-16 93.5 5.4 55 117-172 11-69 (88)
20 2csy_A Zinc finger protein 183 99.3 3.1E-12 1.1E-16 93.1 4.4 50 117-170 11-60 (81)
21 2ysl_A Tripartite motif-contai 99.3 5.9E-12 2E-16 89.5 5.6 52 117-172 16-70 (73)
22 2yur_A Retinoblastoma-binding 99.3 4.1E-12 1.4E-16 91.1 4.6 52 117-171 11-64 (74)
23 2ecy_A TNF receptor-associated 99.2 5.6E-12 1.9E-16 88.2 4.7 52 117-172 11-63 (66)
24 4a0k_B E3 ubiquitin-protein li 99.2 9.5E-13 3.2E-17 103.0 0.6 51 120-170 47-111 (117)
25 4ayc_A E3 ubiquitin-protein li 99.2 2.6E-12 8.8E-17 103.1 2.6 48 120-171 52-99 (138)
26 2egp_A Tripartite motif-contai 99.2 6.4E-12 2.2E-16 90.6 3.5 51 117-171 8-65 (79)
27 1t1h_A Gspef-atpub14, armadill 99.2 1.3E-11 4.6E-16 88.9 4.9 52 117-172 4-56 (78)
28 2ecw_A Tripartite motif-contai 99.2 1.7E-11 5.9E-16 89.2 5.4 52 117-172 15-72 (85)
29 2ct0_A Non-SMC element 1 homol 99.2 1.6E-11 5.3E-16 88.4 4.6 50 119-171 13-64 (74)
30 2ecv_A Tripartite motif-contai 99.2 2E-11 7E-16 88.8 5.3 52 117-172 15-72 (85)
31 2ysj_A Tripartite motif-contai 99.2 2.4E-11 8.2E-16 84.1 5.0 45 117-165 16-63 (63)
32 1g25_A CDK-activating kinase a 99.1 3.1E-11 1.1E-15 84.1 4.7 52 120-171 2-55 (65)
33 4ap4_A E3 ubiquitin ligase RNF 99.1 2E-11 6.8E-16 96.0 4.0 53 119-172 5-61 (133)
34 3lrq_A E3 ubiquitin-protein li 99.1 9.5E-12 3.3E-16 94.4 2.0 50 119-172 20-71 (100)
35 2ecj_A Tripartite motif-contai 99.1 3.8E-11 1.3E-15 81.4 4.6 45 117-165 11-58 (58)
36 2y43_A E3 ubiquitin-protein li 99.1 2.6E-11 9E-16 91.5 4.1 49 120-171 21-69 (99)
37 2ckl_A Polycomb group ring fin 99.1 2.8E-11 9.7E-16 92.8 3.6 51 119-172 13-63 (108)
38 2ckl_B Ubiquitin ligase protei 99.1 5.3E-11 1.8E-15 98.0 4.6 75 94-171 21-102 (165)
39 3ztg_A E3 ubiquitin-protein li 99.1 9E-11 3.1E-15 87.2 4.7 51 117-170 9-61 (92)
40 3fl2_A E3 ubiquitin-protein li 99.1 7.4E-11 2.5E-15 92.7 3.8 48 120-171 51-99 (124)
41 1jm7_A BRCA1, breast cancer ty 99.0 1.6E-10 5.4E-15 88.7 4.4 49 120-172 20-71 (112)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 1.3E-10 4.4E-15 91.3 3.4 53 119-172 70-126 (133)
43 1e4u_A Transcriptional repress 99.0 6.3E-10 2.2E-14 80.8 6.5 56 117-173 7-64 (78)
44 3l11_A E3 ubiquitin-protein li 99.0 5.4E-11 1.8E-15 92.2 0.7 49 119-171 13-62 (115)
45 1z6u_A NP95-like ring finger p 99.0 2.6E-10 9.1E-15 92.8 3.9 49 120-172 77-126 (150)
46 3hct_A TNF receptor-associated 99.0 1.8E-10 6E-15 89.8 2.8 52 117-172 14-66 (118)
47 1bor_A Transcription factor PM 99.0 1.7E-10 5.8E-15 78.3 2.2 48 118-172 3-50 (56)
48 2kr4_A Ubiquitin conjugation f 98.9 5.8E-10 2E-14 82.2 3.8 50 118-171 11-60 (85)
49 2kre_A Ubiquitin conjugation f 98.9 8.5E-10 2.9E-14 83.8 4.7 51 118-172 26-76 (100)
50 1wgm_A Ubiquitin conjugation f 98.9 1.2E-09 4.1E-14 82.7 4.9 51 118-172 19-70 (98)
51 1rmd_A RAG1; V(D)J recombinati 98.9 5.7E-10 1.9E-14 86.5 3.1 49 120-172 22-71 (116)
52 2vje_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 78.1 2.3 47 120-170 7-56 (64)
53 2y1n_A E3 ubiquitin-protein li 98.9 8.9E-10 3.1E-14 102.2 4.0 49 120-172 331-380 (389)
54 1jm7_B BARD1, BRCA1-associated 98.8 7.4E-10 2.5E-14 86.1 1.6 47 120-171 21-67 (117)
55 3knv_A TNF receptor-associated 98.8 9.5E-10 3.3E-14 88.6 2.1 50 117-170 27-77 (141)
56 2vje_B MDM4 protein; proto-onc 98.8 1.2E-09 4.3E-14 75.8 2.2 47 120-170 6-55 (63)
57 3k1l_B Fancl; UBC, ring, RWD, 98.8 9.1E-10 3.1E-14 100.0 1.6 54 118-171 305-373 (381)
58 4ic3_A E3 ubiquitin-protein li 98.8 1.4E-09 4.7E-14 78.0 1.2 44 120-171 23-67 (74)
59 2yu4_A E3 SUMO-protein ligase 98.7 7E-09 2.4E-13 77.7 2.8 50 118-170 4-62 (94)
60 3hcs_A TNF receptor-associated 98.6 8.4E-09 2.9E-13 85.1 2.8 52 117-172 14-66 (170)
61 2c2l_A CHIP, carboxy terminus 98.6 1.1E-08 3.6E-13 90.0 3.2 52 117-172 204-256 (281)
62 2ea5_A Cell growth regulator w 98.6 3.8E-08 1.3E-12 69.4 4.3 46 119-172 13-59 (68)
63 2ecg_A Baculoviral IAP repeat- 98.6 2.9E-08 9.8E-13 71.0 3.2 43 121-171 25-68 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.5 4.1E-08 1.4E-12 67.6 3.5 48 119-170 4-58 (60)
65 1wim_A KIAA0161 protein; ring 98.5 4.1E-08 1.4E-12 73.2 2.9 49 119-168 3-61 (94)
66 2f42_A STIP1 homology and U-bo 98.5 4.2E-08 1.4E-12 82.0 3.3 51 117-171 102-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.5 3E-08 1E-12 71.9 0.8 44 121-172 18-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.3 2.1E-07 7.1E-12 81.8 3.0 51 119-172 179-233 (267)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.2E-07 4.1E-12 87.0 1.1 44 120-171 294-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.3 2.7E-07 9.1E-12 63.6 2.1 47 122-171 4-50 (61)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.5E-06 5.2E-11 65.2 3.9 46 123-171 3-49 (101)
72 3nw0_A Non-structural maintena 97.9 9.1E-06 3.1E-10 70.8 5.8 49 120-171 179-229 (238)
73 2ko5_A Ring finger protein Z; 95.5 0.013 4.4E-07 43.3 3.8 50 117-172 24-74 (99)
74 2lri_C Autoimmune regulator; Z 94.9 0.029 9.8E-07 38.8 4.1 50 117-170 8-61 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 92.8 0.058 2E-06 39.7 2.7 35 120-155 2-36 (101)
76 1we9_A PHD finger family prote 92.2 0.042 1.4E-06 37.3 1.1 50 119-168 4-58 (64)
77 3lqh_A Histone-lysine N-methyl 89.4 0.14 4.7E-06 42.5 1.9 49 121-169 2-64 (183)
78 2k16_A Transcription initiatio 88.5 0.15 5.1E-06 35.7 1.2 53 117-170 14-70 (75)
79 2l5u_A Chromodomain-helicase-D 88.3 0.35 1.2E-05 32.5 3.0 46 118-167 8-57 (61)
80 1wil_A KIAA1045 protein; ring 87.8 0.58 2E-05 33.7 4.0 37 117-155 11-47 (89)
81 1wep_A PHF8; structural genomi 85.8 0.73 2.5E-05 32.5 3.6 50 119-169 10-64 (79)
82 3u5n_A E3 ubiquitin-protein li 85.3 0.2 7E-06 41.9 0.6 48 118-169 4-55 (207)
83 1mm2_A MI2-beta; PHD, zinc fin 84.0 0.26 9E-06 33.2 0.6 47 118-168 6-56 (61)
84 3o36_A Transcription intermedi 83.5 0.32 1.1E-05 39.9 1.0 46 120-169 3-52 (184)
85 2kgg_A Histone demethylase jar 83.3 0.83 2.8E-05 29.5 2.8 44 123-166 4-52 (52)
86 2yql_A PHD finger protein 21A; 82.5 0.25 8.4E-06 32.6 -0.1 47 117-167 5-55 (56)
87 2vpb_A Hpygo1, pygopus homolog 82.3 1.1 3.7E-05 30.6 3.2 34 119-152 6-40 (65)
88 2ri7_A Nucleosome-remodeling f 81.8 0.82 2.8E-05 36.9 2.8 49 119-168 6-59 (174)
89 2l43_A N-teminal domain from h 80.7 0.75 2.6E-05 33.3 2.0 53 118-170 22-77 (88)
90 1wee_A PHD finger family prote 79.5 0.44 1.5E-05 33.0 0.4 50 119-169 14-67 (72)
91 1wem_A Death associated transc 79.4 0.94 3.2E-05 31.6 2.1 47 121-169 16-71 (76)
92 2e6r_A Jumonji/ARID domain-con 79.1 0.56 1.9E-05 34.3 0.8 51 118-169 13-67 (92)
93 1z60_A TFIIH basal transcripti 78.6 1.2 4.2E-05 29.8 2.4 43 122-165 16-58 (59)
94 1xwh_A Autoimmune regulator; P 78.1 0.53 1.8E-05 32.1 0.4 46 119-168 6-55 (66)
95 2ku3_A Bromodomain-containing 77.5 1.2 4E-05 31.0 2.1 51 118-168 13-66 (71)
96 3m62_A Ubiquitin conjugation f 76.8 1.8 6.2E-05 44.3 4.0 51 117-171 887-938 (968)
97 2puy_A PHD finger protein 21A; 75.2 0.71 2.4E-05 30.7 0.4 46 120-169 4-53 (60)
98 1f62_A Transcription factor WS 74.9 1.6 5.5E-05 27.8 2.1 44 123-167 2-49 (51)
99 1wew_A DNA-binding family prot 73.8 1.3 4.3E-05 31.2 1.5 48 120-169 15-73 (78)
100 3v43_A Histone acetyltransfera 73.2 1.1 3.8E-05 33.7 1.1 45 123-167 63-111 (112)
101 2lbm_A Transcriptional regulat 72.0 5 0.00017 31.6 4.7 46 118-167 60-116 (142)
102 1weu_A Inhibitor of growth fam 71.9 2.2 7.7E-05 31.1 2.5 46 119-169 34-86 (91)
103 3o70_A PHD finger protein 13; 71.8 1.2 4.2E-05 30.5 1.0 47 119-167 17-66 (68)
104 2xb1_A Pygopus homolog 2, B-ce 71.4 1.9 6.4E-05 32.2 2.0 49 121-169 3-62 (105)
105 1fp0_A KAP-1 corepressor; PHD 71.3 1.4 4.9E-05 31.9 1.3 47 118-168 22-72 (88)
106 2yt5_A Metal-response element- 69.9 2.5 8.5E-05 28.4 2.2 52 118-169 3-62 (66)
107 1wen_A Inhibitor of growth fam 69.6 3.8 0.00013 28.3 3.1 46 119-169 14-66 (71)
108 2lv9_A Histone-lysine N-methyl 69.5 1.9 6.5E-05 31.7 1.6 46 120-167 27-75 (98)
109 3v43_A Histone acetyltransfera 68.0 8.3 0.00028 28.7 5.1 47 120-166 4-62 (112)
110 2ysm_A Myeloid/lymphoid or mix 67.6 1.9 6.5E-05 32.1 1.3 48 118-166 4-55 (111)
111 2cs3_A Protein C14ORF4, MY039 66.2 12 0.00042 26.6 5.2 40 119-158 13-52 (93)
112 2ro1_A Transcription intermedi 65.9 1.6 5.5E-05 36.0 0.7 44 121-168 2-49 (189)
113 3ql9_A Transcriptional regulat 65.1 7.9 0.00027 30.0 4.5 47 117-167 53-110 (129)
114 3c6w_A P28ING5, inhibitor of g 62.7 2.6 8.8E-05 28.0 1.1 44 119-167 7-57 (59)
115 1y02_A CARP2, FYVE-ring finger 62.2 1.2 4E-05 34.3 -0.8 50 120-169 18-67 (120)
116 4gne_A Histone-lysine N-methyl 62.1 7.4 0.00025 29.1 3.7 50 117-172 11-66 (107)
117 2knc_A Integrin alpha-IIB; tra 60.6 16 0.00056 23.8 4.7 7 30-36 12-18 (54)
118 2zxe_G FXYD10, phospholemman-l 59.9 5.3 0.00018 27.8 2.3 40 24-63 10-49 (74)
119 2jp3_A FXYD domain-containing 59.9 20 0.00069 24.4 5.1 40 24-63 8-47 (67)
120 2vnf_A ING 4, P29ING4, inhibit 59.7 2.9 9.8E-05 27.8 0.9 44 119-167 8-58 (60)
121 2l2t_A Receptor tyrosine-prote 59.4 8.6 0.00029 24.1 3.0 16 40-55 20-35 (44)
122 3i2d_A E3 SUMO-protein ligase 59.1 6.2 0.00021 36.0 3.3 49 122-173 250-302 (371)
123 2yw8_A RUN and FYVE domain-con 58.6 6.8 0.00023 27.6 2.8 36 119-154 17-52 (82)
124 1z2q_A LM5-1; membrane protein 58.5 7.7 0.00026 27.4 3.1 37 119-155 19-55 (84)
125 1weo_A Cellulose synthase, cat 57.0 18 0.00063 26.1 4.8 52 120-171 15-70 (93)
126 2jo1_A Phospholemman; FXYD1, N 57.0 27 0.00092 24.0 5.4 25 39-63 22-46 (72)
127 3t7l_A Zinc finger FYVE domain 57.0 6.2 0.00021 28.3 2.4 37 120-156 19-55 (90)
128 1wfk_A Zinc finger, FYVE domai 56.5 8 0.00027 27.7 2.9 36 119-154 7-42 (88)
129 1vfy_A Phosphatidylinositol-3- 56.2 7.7 0.00026 26.6 2.7 32 122-153 12-43 (73)
130 4fo9_A E3 SUMO-protein ligase 56.2 7.4 0.00025 35.3 3.3 48 122-172 216-267 (360)
131 2e6s_A E3 ubiquitin-protein li 56.1 2.5 8.6E-05 29.7 0.1 44 123-167 28-76 (77)
132 2rsd_A E3 SUMO-protein ligase 55.7 1.3 4.5E-05 30.2 -1.4 46 120-167 9-64 (68)
133 1joc_A EEA1, early endosomal a 55.5 6.5 0.00022 30.1 2.4 35 120-154 68-102 (125)
134 3shb_A E3 ubiquitin-protein li 55.3 2.4 8.3E-05 29.8 -0.1 44 123-167 28-76 (77)
135 3asl_A E3 ubiquitin-protein li 55.1 2.9 9.9E-05 28.7 0.3 44 123-167 20-68 (70)
136 1wev_A Riken cDNA 1110020M19; 55.0 2.4 8E-05 30.6 -0.2 50 121-170 16-74 (88)
137 2kwj_A Zinc finger protein DPF 53.9 7.9 0.00027 29.0 2.6 45 122-166 2-59 (114)
138 1x4u_A Zinc finger, FYVE domai 53.4 8.7 0.0003 27.1 2.7 35 119-153 12-46 (84)
139 1dvp_A HRS, hepatocyte growth 52.7 6.3 0.00022 32.9 2.1 35 120-154 160-194 (220)
140 1x64_A Alpha-actinin-2 associa 52.5 12 0.00041 26.2 3.3 41 119-171 23-63 (89)
141 1zbd_B Rabphilin-3A; G protein 52.3 7.3 0.00025 30.3 2.3 49 120-168 54-107 (134)
142 3kv5_D JMJC domain-containing 52.2 4.3 0.00015 38.4 1.1 50 119-169 35-89 (488)
143 3ask_A E3 ubiquitin-protein li 51.8 3.7 0.00012 35.0 0.5 45 123-168 176-225 (226)
144 3zyq_A Hepatocyte growth facto 51.5 7 0.00024 32.9 2.2 36 120-155 163-198 (226)
145 3kqi_A GRC5, PHD finger protei 49.8 8.5 0.00029 26.5 2.1 48 121-169 10-62 (75)
146 2g6q_A Inhibitor of growth pro 48.3 6.3 0.00021 26.4 1.1 46 119-167 9-59 (62)
147 3o7a_A PHD finger protein 13 v 46.9 5.6 0.00019 25.4 0.7 41 126-167 8-51 (52)
148 3mpx_A FYVE, rhogef and PH dom 45.7 4.4 0.00015 37.0 0.0 49 120-168 374-429 (434)
149 1g47_A Pinch protein; LIM doma 44.6 20 0.00069 24.0 3.4 42 120-171 10-51 (77)
150 1afo_A Glycophorin A; integral 44.6 51 0.0017 20.0 4.9 6 48-53 27-32 (40)
151 2gmg_A Hypothetical protein PF 44.1 5.8 0.0002 29.6 0.5 24 142-170 72-95 (105)
152 1x4k_A Skeletal muscle LIM-pro 42.1 19 0.00066 23.7 2.9 40 122-171 6-45 (72)
153 2jmo_A Parkin; IBR, E3 ligase, 41.5 3 0.0001 29.4 -1.5 15 142-156 55-69 (80)
154 2dj7_A Actin-binding LIM prote 41.2 20 0.00067 24.6 2.9 40 120-170 14-53 (80)
155 1wyh_A SLIM 2, skeletal muscle 41.2 24 0.00082 23.2 3.3 41 121-171 5-45 (72)
156 3a1b_A DNA (cytosine-5)-methyl 41.1 23 0.00079 28.3 3.6 36 118-157 76-113 (159)
157 1pi7_A VPU protein, U ORF prot 40.5 57 0.002 19.4 4.6 10 47-56 20-29 (36)
158 2cu8_A Cysteine-rich protein 2 40.0 15 0.00051 24.7 2.1 40 121-171 9-48 (76)
159 2klu_A T-cell surface glycopro 40.0 38 0.0013 23.0 4.0 17 39-55 13-29 (70)
160 2co8_A NEDD9 interacting prote 39.6 25 0.00086 24.1 3.3 41 120-171 14-54 (82)
161 1x61_A Thyroid receptor intera 39.2 24 0.00083 23.2 3.1 40 121-170 5-44 (72)
162 2cor_A Pinch protein; LIM doma 39.0 33 0.0011 23.3 3.8 41 119-171 13-53 (79)
163 1x4l_A Skeletal muscle LIM-pro 37.2 27 0.00094 23.0 3.1 40 121-170 5-46 (72)
164 2k1a_A Integrin alpha-IIB; sin 36.8 35 0.0012 21.0 3.2 7 30-36 10-16 (42)
165 2pv0_B DNA (cytosine-5)-methyl 36.0 27 0.00093 31.9 3.7 46 119-168 91-148 (386)
166 1iml_A CRIP, cysteine rich int 35.9 14 0.00047 24.9 1.4 37 123-170 2-38 (76)
167 1x63_A Skeletal muscle LIM-pro 35.4 26 0.00089 23.7 2.8 41 121-171 15-55 (82)
168 2k21_A Potassium voltage-gated 35.3 37 0.0013 26.1 3.8 26 32-57 53-78 (138)
169 1x62_A C-terminal LIM domain p 35.0 19 0.00066 24.4 2.0 39 120-170 14-52 (79)
170 3f6q_B LIM and senescent cell 34.5 24 0.00081 23.0 2.4 41 121-171 11-51 (72)
171 1x68_A FHL5 protein; four-and- 34.1 31 0.0011 23.1 3.0 39 122-170 6-46 (76)
172 3fyb_A Protein of unknown func 34.0 15 0.00053 27.0 1.4 12 146-157 41-52 (104)
173 2o35_A Hypothetical protein DU 33.9 16 0.00053 27.0 1.4 12 146-157 42-53 (105)
174 3mjh_B Early endosome antigen 33.3 9.6 0.00033 22.5 0.1 14 121-134 5-18 (34)
175 2zet_C Melanophilin; complex, 33.2 21 0.00072 28.3 2.2 48 120-168 67-117 (153)
176 2dar_A PDZ and LIM domain prot 32.9 28 0.00094 24.3 2.6 40 120-171 24-63 (90)
177 2lk9_A Bone marrow stromal ant 32.5 52 0.0018 19.2 3.2 17 37-53 11-27 (35)
178 2l3k_A Rhombotin-2, linker, LI 32.2 20 0.00069 26.7 1.9 37 123-169 10-46 (123)
179 2ct7_A Ring finger protein 31; 31.5 4.4 0.00015 28.8 -2.0 27 139-165 45-73 (86)
180 1zfo_A LAsp-1; LIM domain, zin 30.1 18 0.00063 20.4 1.0 27 122-151 4-30 (31)
181 3ogl_Q JAZ1 incomplete degron 29.7 21 0.00071 18.7 1.0 12 251-262 3-14 (21)
182 2d8x_A Protein pinch; LIM doma 29.0 30 0.001 22.7 2.1 39 121-171 5-43 (70)
183 1x4i_A Inhibitor of growth pro 28.7 25 0.00086 23.9 1.7 47 120-169 5-56 (70)
184 2l4z_A DNA endonuclease RBBP8, 28.7 27 0.00093 26.2 2.1 39 121-170 61-99 (123)
185 3arc_I Photosystem II reaction 27.9 56 0.0019 19.6 2.9 19 35-53 3-21 (38)
186 1wig_A KIAA1808 protein; LIM d 27.6 34 0.0012 22.8 2.3 37 122-170 6-42 (73)
187 1nyp_A Pinch protein; LIM doma 27.6 35 0.0012 22.0 2.3 38 121-170 5-42 (66)
188 1a7i_A QCRP2 (LIM1); LIM domai 27.4 19 0.00065 24.5 0.9 40 121-171 7-46 (81)
189 3kv4_A PHD finger protein 8; e 27.3 17 0.00057 34.0 0.7 48 123-170 6-58 (447)
190 2d8y_A Eplin protein; LIM doma 27.0 38 0.0013 23.6 2.5 40 121-171 15-54 (91)
191 2d8z_A Four and A half LIM dom 26.6 43 0.0015 21.8 2.6 38 121-170 5-42 (70)
192 1x6a_A LIMK-2, LIM domain kina 24.3 42 0.0014 22.6 2.3 37 122-170 16-52 (81)
193 2jne_A Hypothetical protein YF 24.1 26 0.00089 25.7 1.1 40 122-170 33-72 (101)
194 2d8v_A Zinc finger FYVE domain 24.1 48 0.0016 22.5 2.3 33 118-155 5-38 (67)
195 2lat_A Dolichyl-diphosphooligo 23.9 1.2E+02 0.004 18.1 3.8 21 33-53 8-28 (37)
196 3mp7_B Preprotein translocase 23.8 1E+02 0.0035 20.4 3.9 32 20-51 24-55 (61)
197 3arc_M Photosystem II reaction 22.3 93 0.0032 18.5 3.1 16 39-54 12-27 (36)
198 2a20_A Regulating synaptic mem 21.8 12 0.00041 25.0 -1.0 39 117-156 5-44 (62)
199 2egq_A FHL1 protein; LIM domai 21.8 51 0.0017 21.9 2.3 40 121-170 15-57 (77)
200 2cur_A Skeletal muscle LIM-pro 21.3 53 0.0018 21.3 2.2 38 121-170 5-42 (69)
201 2kpi_A Uncharacterized protein 20.8 64 0.0022 20.9 2.4 15 118-132 7-21 (56)
202 1v6g_A Actin binding LIM prote 20.5 35 0.0012 23.1 1.2 38 122-171 16-53 (81)
203 1wd2_A Ariadne-1 protein homol 20.5 42 0.0014 22.1 1.5 15 160-174 7-21 (60)
204 2das_A Zinc finger MYM-type pr 20.2 1E+02 0.0034 20.5 3.2 36 121-156 20-56 (62)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=129.42 Aligned_cols=83 Identities=23% Similarity=0.608 Sum_probs=73.0
Q ss_pred CCCCCccCCCCCHHHHhhCCceecCCCCCCCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccc
Q 024682 88 NTAPPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 167 (264)
Q Consensus 88 ~~~~~~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 167 (264)
.........+++++.+++||.+.+........++..|+||++.|..++.++.++ |||.||..||..|+..+.+||+||.
T Consensus 7 ~~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 7 HHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp CSCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred cCCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCc
Confidence 344556678999999999999999887556667789999999999988888999 9999999999999999999999999
Q ss_pred cccC
Q 024682 168 PVQL 171 (264)
Q Consensus 168 ~v~~ 171 (264)
.+.+
T Consensus 86 ~~~~ 89 (91)
T 2l0b_A 86 MFPP 89 (91)
T ss_dssp BSSC
T ss_pred cCCC
Confidence 8764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=114.38 Aligned_cols=68 Identities=37% Similarity=0.917 Sum_probs=58.6
Q ss_pred HhhCCceecCCCCCCCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 103 LKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 103 i~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
+++||..+++... ...+..+|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||+.+.+.
T Consensus 6 i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 5678888887652 3456688999999999998889998 999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.54 E-value=3.8e-15 Score=100.61 Aligned_cols=52 Identities=56% Similarity=1.262 Sum_probs=46.9
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
+++.+|+||++.|..++.+..++.|||.||..||..|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999998888888779999999999999999999999998763
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.2e-15 Score=105.00 Aligned_cols=54 Identities=35% Similarity=0.862 Sum_probs=48.4
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...++..|+||++.|..+..+..++ |+|.||..||..|++.+.+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3455678999999999998888888 99999999999999988899999998864
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.1e-14 Score=105.39 Aligned_cols=55 Identities=36% Similarity=0.903 Sum_probs=48.9
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
...+..+|+||++.|..+..+..++ |+|.||..||..|++.+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3455678999999999988888888 999999999999999999999999988654
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=102.13 Aligned_cols=55 Identities=36% Similarity=0.968 Sum_probs=48.4
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|..++.++.++ |||.||..||..|+..+.+||+||..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3455678999999998888888898 999999999999999889999999988654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=104.67 Aligned_cols=51 Identities=31% Similarity=0.760 Sum_probs=42.8
Q ss_pred CCCccccccccccC-----------CCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFED-----------NENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
++..|+||++.|.+ .+.++.++.|+|.||..||+.|++.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45678888888854 3456677679999999999999999999999999875
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.40 E-value=2.3e-13 Score=105.38 Aligned_cols=52 Identities=25% Similarity=0.672 Sum_probs=41.6
Q ss_pred CCCccccccccccCCC---------------ceeEeCCCCccccHHHHHHHH-----cCCCCcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNE---------------NGRVLPKCRHVFHVDCIDMWF-----QSHSNCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~v~~~ 172 (264)
.+.+|+||++.|..+. .++.++ |+|.||..||..|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999997653 233555 99999999999999 4577899999988644
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.3e-13 Score=92.81 Aligned_cols=50 Identities=30% Similarity=0.831 Sum_probs=42.4
Q ss_pred CCCccccccccccCCC-ceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNE-NGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
+..+|+||++.|.+++ ....++ |+|.||..||..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578999999997654 355566 9999999999999998899999998764
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=96.21 Aligned_cols=53 Identities=23% Similarity=0.668 Sum_probs=44.3
Q ss_pred CCCCCCccccccccccCC----CceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDN----ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...+...|+||++.|.++ ..+..++ |||.||..||..|+..+.+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345668899999999865 2335666 9999999999999998899999999875
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.37 E-value=1.8e-13 Score=96.85 Aligned_cols=54 Identities=22% Similarity=0.649 Sum_probs=45.1
Q ss_pred CCCCCccccccccccCC----CceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 118 PKEPLDCAVCLSEFEDN----ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
..+..+|+||++.|.++ +....++ |||.||..||..|++.+.+||+||..+...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 35667899999999764 3445666 999999999999999899999999988643
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.36 E-value=4.1e-13 Score=103.44 Aligned_cols=50 Identities=28% Similarity=0.596 Sum_probs=42.3
Q ss_pred CCCccccccccccCCC---------------ceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNE---------------NGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
++..|+||++.|..+- .+..++ |+|.||..||..|+..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999998651 245566 9999999999999999999999999864
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.7e-13 Score=94.31 Aligned_cols=53 Identities=25% Similarity=0.564 Sum_probs=44.4
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|.++ ..+..|||.||..||..|++.+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 445678899999999876 34424999999999999998888999999988654
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.34 E-value=3.6e-13 Score=93.21 Aligned_cols=51 Identities=22% Similarity=0.622 Sum_probs=43.4
Q ss_pred CCCccccccccccCC----CceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDN----ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
++.+|+||++.+.++ +.+..++ |||.||..|+..|++.+.+||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999999764 3445666 99999999999999988999999998864
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7.6e-13 Score=96.85 Aligned_cols=54 Identities=28% Similarity=0.730 Sum_probs=44.5
Q ss_pred CCCCCCccccccccccCCCceeEeCCCC-----ccccHHHHHHHHcCC--CCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCR-----HVFHVDCIDMWFQSH--SNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~~ 172 (264)
...+...|.||+++|.+++.+ ++| |+ |.||..||+.|+..+ .+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 455677899999999877665 577 96 999999999999765 4899999988643
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.1e-13 Score=93.76 Aligned_cols=51 Identities=35% Similarity=0.905 Sum_probs=44.0
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.+.+ ..++ |||.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 44567889999999866 5677 999999999999999999999999988643
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.6e-13 Score=94.09 Aligned_cols=50 Identities=30% Similarity=0.599 Sum_probs=43.2
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..+...|+||++.+.++ ..++ |||.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34567899999998765 5667 99999999999999988999999998863
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.1e-12 Score=92.18 Aligned_cols=48 Identities=35% Similarity=0.945 Sum_probs=41.7
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
++..|+||++.+.++ ...++ |||.||..|+..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999998654 45666 9999999999999998899999999885
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4e-12 Score=93.50 Aligned_cols=55 Identities=24% Similarity=0.727 Sum_probs=45.4
Q ss_pred CCCCCCccccccccccCCCc-eeEeCCCCccccHHHHHHHHcCC---CCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNEN-GRVLPKCRHVFHVDCIDMWFQSH---SNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~v~~~ 172 (264)
...+..+|+||++.|.+.+. ...++ |||.||..||..|+..+ .+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 44567889999999988654 56676 99999999999999765 6899999987643
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.1e-12 Score=93.12 Aligned_cols=50 Identities=28% Similarity=0.729 Sum_probs=43.1
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...+...|+||++.|.++ .+++ |||.||..||..|+....+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344567899999999776 4566 9999999999999998889999999885
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.9e-12 Score=89.53 Aligned_cols=52 Identities=27% Similarity=0.676 Sum_probs=42.7
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc---CCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ---SHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|.++ ..++ |||.||..||..|++ .+..||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 445678999999998765 4566 999999999999996 455899999988643
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=4.1e-12 Score=91.11 Aligned_cols=52 Identities=23% Similarity=0.527 Sum_probs=42.5
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC--CCcccccccccC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH--SNCPLCRAPVQL 171 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~ 171 (264)
...+...|+||++.|.++ ..++.|||.||..||..|+..+ .+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 445668899999999887 3455599999999999999755 689999997643
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.6e-12 Score=88.19 Aligned_cols=52 Identities=19% Similarity=0.513 Sum_probs=42.7
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHH-cCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.+.++ ..++ |||.||..||..|+ ..+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345678899999999877 2355 99999999999999 4567899999988643
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.24 E-value=9.5e-13 Score=103.03 Aligned_cols=51 Identities=27% Similarity=0.624 Sum_probs=1.1
Q ss_pred CCCccccccccccCCC-------------c-eeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNE-------------N-GRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~-------------~-~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
+++.|+||++.|..+. . ..+++.|+|.||..||+.|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4578999999997631 1 2222349999999999999999999999999864
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=2.6e-12 Score=103.09 Aligned_cols=48 Identities=31% Similarity=0.858 Sum_probs=42.0
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
++..|+||++.|.++ ..++ |||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 346799999999776 5677 99999999999999999999999998853
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=6.4e-12 Score=90.61 Aligned_cols=51 Identities=25% Similarity=0.657 Sum_probs=43.2
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-------CCCcccccccccC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-------HSNCPLCRAPVQL 171 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~v~~ 171 (264)
...+...|+||++.|.++ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 445678999999999877 3466 9999999999999976 5679999998864
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.19 E-value=1.3e-11 Score=88.92 Aligned_cols=52 Identities=17% Similarity=0.485 Sum_probs=44.1
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|.++ ..++ |||.||..||..|+.. +.+||+||..+...
T Consensus 4 ~~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CCSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CCcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 345678999999999877 4566 9999999999999987 77899999988643
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1.7e-11 Score=89.16 Aligned_cols=52 Identities=33% Similarity=0.799 Sum_probs=43.4
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC------CCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS------HSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|.++ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred hCccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 345678899999999877 3566 9999999999999976 66799999988643
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=88.42 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=41.4
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC--CCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH--SNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~ 171 (264)
....+|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||.++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34578999999998664332 599999999999999887 789999988753
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=88.78 Aligned_cols=52 Identities=31% Similarity=0.714 Sum_probs=43.5
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC------CCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS------HSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|.++ ..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred HccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 345668899999999876 4566 9999999999999976 77899999988753
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=84.06 Aligned_cols=45 Identities=29% Similarity=0.717 Sum_probs=38.0
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc---CCCCcccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ---SHSNCPLC 165 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~C 165 (264)
...+...|+||++.|.++ ..++ |||.||..||..|++ ...+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678899999999876 4566 999999999999997 45689998
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=3.1e-11 Score=84.07 Aligned_cols=52 Identities=23% Similarity=0.680 Sum_probs=41.1
Q ss_pred CCCccccccc-cccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccC
Q 024682 120 EPLDCAVCLS-EFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~-~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~ 171 (264)
++..|+||++ .|.++....++.+|||.||..||..|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3567999999 88777554343349999999999999754 4679999998864
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=2e-11 Score=96.01 Aligned_cols=53 Identities=21% Similarity=0.614 Sum_probs=45.1
Q ss_pred CCCCccccccccccCC----CceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDN----ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
.+..+|+||++.|.++ +....++ |||.||..||..|++.+.+||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4567899999999775 4446676 999999999999999999999999988643
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=9.5e-12 Score=94.41 Aligned_cols=50 Identities=34% Similarity=0.917 Sum_probs=42.0
Q ss_pred CCCCccccccccccCCCceeE-eCCCCccccHHHHHHHHcCC-CCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRV-LPKCRHVFHVDCIDMWFQSH-SNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~-lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~ 172 (264)
.+...|+||++.|.++ .. ++ |||.||..||..|+..+ .+||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 3457899999999876 44 55 99999999999999877 6899999998643
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.8e-11 Score=81.36 Aligned_cols=45 Identities=29% Similarity=0.858 Sum_probs=37.2
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc---CCCCcccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ---SHSNCPLC 165 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~C 165 (264)
...+...|+||++.+.++ ..++ |||.||..||..|+. .+.+||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678899999999887 4466 999999999999954 56679998
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=91.49 Aligned_cols=49 Identities=27% Similarity=0.745 Sum_probs=42.0
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
+...|+||++.|.++ ..+++|||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456899999999876 4453499999999999999988999999998864
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.11 E-value=2.8e-11 Score=92.80 Aligned_cols=51 Identities=27% Similarity=0.659 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
.+...|+||++.|.++ ..+..|||.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4567899999999776 44423999999999999999889999999988753
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.09 E-value=5.3e-11 Score=98.02 Aligned_cols=75 Identities=27% Similarity=0.533 Sum_probs=53.6
Q ss_pred cCCCCCHHHHhhCCceecCCCC------CCCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCccccc
Q 024682 94 AHQALDLSILKRIPAFVYSPNI------EDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCR 166 (264)
Q Consensus 94 ~~~gl~~~~i~~lp~~~~~~~~------~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr 166 (264)
...++....+...+........ +...+...|+||++.|.++ ..+..|||.||..||..|+.. +..||+||
T Consensus 21 ~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr 97 (165)
T 2ckl_B 21 KTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCR 97 (165)
T ss_dssp CCCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred ccccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCC
Confidence 3456777777666554443321 1223456899999999875 444239999999999999987 77899999
Q ss_pred ccccC
Q 024682 167 APVQL 171 (264)
Q Consensus 167 ~~v~~ 171 (264)
..+..
T Consensus 98 ~~~~~ 102 (165)
T 2ckl_B 98 KKLVS 102 (165)
T ss_dssp CBCCS
T ss_pred CcCCC
Confidence 98853
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.07 E-value=9e-11 Score=87.19 Aligned_cols=51 Identities=24% Similarity=0.555 Sum_probs=42.1
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC--CCCccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS--HSNCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~v~ 170 (264)
...+...|+||++.|.++ ..++.|||.||..||..|+.. +..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456678999999999887 445449999999999999964 358999999873
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.06 E-value=7.4e-11 Score=92.67 Aligned_cols=48 Identities=27% Similarity=0.606 Sum_probs=40.9
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC-CcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS-NCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~ 171 (264)
+...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 457899999999876 4566 999999999999997544 89999999865
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.6e-10 Score=88.72 Aligned_cols=49 Identities=24% Similarity=0.689 Sum_probs=40.9
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC---CcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS---NCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~v~~~ 172 (264)
+...|+||++.|.++ ..++ |||.||..||..|+..+. +||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 346799999999877 3456 999999999999997654 899999988754
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.3e-10 Score=91.32 Aligned_cols=53 Identities=21% Similarity=0.614 Sum_probs=43.9
Q ss_pred CCCCccccccccccCC----CceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDN----ENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
.+...|+||++.|.++ .....++ |||.||..||+.|++.+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999999764 2334556 999999999999999999999999988643
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=6.3e-10 Score=80.79 Aligned_cols=56 Identities=21% Similarity=0.501 Sum_probs=42.2
Q ss_pred CCCCCCccccccccccCCCceeE-eCCCCccccHHHHHHHHc-CCCCcccccccccCCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRV-LPKCRHVFHVDCIDMWFQ-SHSNCPLCRAPVQLDI 173 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~-lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~~~ 173 (264)
...++.+|+||++.+...+.... ++ |||.||..|+..|+. ....||.||+.+....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 44567889999999864432222 34 999999999999874 3567999999987543
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.99 E-value=5.4e-11 Score=92.16 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=41.7
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~ 171 (264)
.++..|+||++.|.++ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4567899999999877 4566 9999999999999976 6689999998863
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.97 E-value=2.6e-10 Score=92.80 Aligned_cols=49 Identities=22% Similarity=0.561 Sum_probs=41.7
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC-CcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS-NCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~~ 172 (264)
+...|+||++.|.++ ..++ |||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999877 4466 999999999999998654 799999998754
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.97 E-value=1.8e-10 Score=89.82 Aligned_cols=52 Identities=21% Similarity=0.518 Sum_probs=43.4
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC-CcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS-NCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~~~ 172 (264)
...+...|+||++.+.++ ..++ |||.||..||..|+.... +||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 445668999999999877 4566 999999999999997655 899999988653
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.7e-10 Score=78.28 Aligned_cols=48 Identities=31% Similarity=0.731 Sum_probs=40.0
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
..+...|+||++.|.++ +.++ |||.||..|+..| ...||+||..+...
T Consensus 3 e~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 45668899999999887 5677 9999999999874 56899999988643
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.92 E-value=5.8e-10 Score=82.16 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=43.7
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..+...|+||++.|.++ .+++ |||.|+..||..|+..+.+||+|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 34678899999999998 4566 99999999999999988899999998764
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.92 E-value=8.5e-10 Score=83.84 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=44.5
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccCC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
..+...|+||++.|.+| .+++ |||.|+..||..|+..+.+||+||.++...
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34578899999999998 5566 999999999999999888999999988643
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.90 E-value=1.2e-09 Score=82.71 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=44.2
Q ss_pred CCCCCccccccccccCCCceeEeCCCC-ccccHHHHHHHHcCCCCcccccccccCC
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCR-HVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
..+...|+||++.|.+| .+++ || |.|+..||..|+..+.+||+||.++...
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 34578899999999998 4455 99 9999999999999888999999988643
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.89 E-value=5.7e-10 Score=86.47 Aligned_cols=49 Identities=29% Similarity=0.629 Sum_probs=41.5
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~ 172 (264)
+...|+||++.+.++ ..++ |||.||..||..|+.. ..+||+||..+...
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 357899999999776 4466 9999999999999976 67899999988653
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.89 E-value=4.9e-10 Score=78.15 Aligned_cols=47 Identities=21% Similarity=0.582 Sum_probs=39.8
Q ss_pred CCCccccccccccCCCceeEe--CCCCcc-ccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVL--PKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
++.+|.||++.+.+. ..+ | |||. |+..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999986554 444 7 9999 899999999988889999999885
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.87 E-value=8.9e-10 Score=102.21 Aligned_cols=49 Identities=24% Similarity=0.735 Sum_probs=41.7
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-CCCCcccccccccCC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-SHSNCPLCRAPVQLD 172 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~~ 172 (264)
...+|+||++.+.++ ..+| |||.||..|+..|+. .+.+||+||..+...
T Consensus 331 ~~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 346899999998665 5677 999999999999998 678899999988643
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=7.4e-10 Score=86.12 Aligned_cols=47 Identities=26% Similarity=0.745 Sum_probs=39.8
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
+...|+||++.|.++ ..+..|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 457899999999887 44513999999999999987 789999999854
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.82 E-value=9.5e-10 Score=88.60 Aligned_cols=50 Identities=18% Similarity=0.370 Sum_probs=42.0
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC-Cccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS-NCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~ 170 (264)
...+...|+||++.|.++ ..++ |||.||..||..|+.... +||+||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 345678999999999888 3455 999999999999997654 8999999864
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.81 E-value=1.2e-09 Score=75.83 Aligned_cols=47 Identities=19% Similarity=0.532 Sum_probs=39.4
Q ss_pred CCCccccccccccCCCceeEe--CCCCcc-ccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVL--PKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
....|.||++...+. .++ | |||. |+..|+..|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456899999986554 334 7 9998 999999999988889999999885
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.80 E-value=9.1e-10 Score=100.01 Aligned_cols=54 Identities=28% Similarity=0.676 Sum_probs=40.9
Q ss_pred CCCCCccccccccccCCC----ceeEeCCCCccccHHHHHHHHcCC-----------CCcccccccccC
Q 024682 118 PKEPLDCAVCLSEFEDNE----NGRVLPKCRHVFHVDCIDMWFQSH-----------SNCPLCRAPVQL 171 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~----~~~~lp~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~v~~ 171 (264)
.....+|+||++.+.+.. ..-..++|+|.||..|+.+||++. .+||+||.++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345678999999998732 222233599999999999999642 369999998863
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.76 E-value=1.4e-09 Score=77.95 Aligned_cols=44 Identities=23% Similarity=0.651 Sum_probs=37.3
Q ss_pred CCCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
+...|.||++.+.++ ..+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 346799999997665 5667 9999 999999998 789999998853
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=7e-09 Score=77.67 Aligned_cols=50 Identities=20% Similarity=0.469 Sum_probs=40.4
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC------CCccc--cccc-cc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH------SNCPL--CRAP-VQ 170 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~-v~ 170 (264)
..+...|+||++.|.+| .+++.|||.|+..||..|+..+ .+||+ |+.. +.
T Consensus 4 ~~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp CSSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CCcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 34568899999999988 4453599999999999999653 48999 9866 44
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.65 E-value=8.4e-09 Score=85.08 Aligned_cols=52 Identities=21% Similarity=0.514 Sum_probs=43.2
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC-CCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH-SNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|.++ ..++ |||.||..||..|+... .+||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 445678999999999887 4455 99999999999999754 4899999988653
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=1.1e-08 Score=89.99 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC-CCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-HSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~~~ 172 (264)
...+...|+||++.|.+| .+++ |||.||..||..|+.. +.+||+||.++...
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 344678899999999998 4556 9999999999999975 44599999988643
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.8e-08 Score=69.35 Aligned_cols=46 Identities=35% Similarity=0.795 Sum_probs=37.3
Q ss_pred CCCCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCcccccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
.+...|.||++...+. ..+| |||. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCE---EEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4567899999986554 6677 9999 99999984 47899999988643
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.9e-08 Score=71.04 Aligned_cols=43 Identities=21% Similarity=0.643 Sum_probs=35.6
Q ss_pred CCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|+||++.+.++ ..+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45799999998665 4567 9999 99999965 3789999998864
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.55 E-value=4.1e-08 Score=67.59 Aligned_cols=48 Identities=19% Similarity=0.594 Sum_probs=36.9
Q ss_pred CCCCccccccccccCCCceeEeCCCC--c---cccHHHHHHHHcC--CCCccccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCR--H---VFHVDCIDMWFQS--HSNCPLCRAPVQ 170 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~fh~~Ci~~wl~~--~~~CP~Cr~~v~ 170 (264)
.+...|.||+++.. +.+ ++| |. | .||..|+..|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999843 233 577 65 4 8999999999953 578999998764
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=4.1e-08 Score=73.20 Aligned_cols=49 Identities=20% Similarity=0.613 Sum_probs=39.1
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC--------CCCccc--cccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS--------HSNCPL--CRAP 168 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~ 168 (264)
.+..+|+||++++..++.+.+.+ |||.||..|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34678999999998775555456 9999999999999853 236999 9987
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.51 E-value=4.2e-08 Score=81.97 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=42.7
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC-CCcccccccccC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH-SNCPLCRAPVQL 171 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~~ 171 (264)
...+...|+||++.|.+| .+++ |||.|+..||..|+..+ .+||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 445678999999999988 4555 99999999999999753 479999998754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.45 E-value=3e-08 Score=71.90 Aligned_cols=44 Identities=30% Similarity=0.682 Sum_probs=36.5
Q ss_pred CCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCcccccccccCC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
...|.||++.+.+. ..+| |||. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCE---EEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcE---EEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45799999987554 6677 9999 999999877 4999999988643
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.1e-07 Score=81.84 Aligned_cols=51 Identities=31% Similarity=0.633 Sum_probs=40.7
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC--CCccc--ccccccCC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH--SNCPL--CRAPVQLD 172 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~v~~~ 172 (264)
.....|+||++.|.+| + ....|||.|+..||..|+..+ .+||+ |+..+...
T Consensus 179 ~~el~CPIcl~~f~DP--V-ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--L-ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSSE--E-EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccCC--e-eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 3456899999999888 2 233499999999999999764 46999 99977543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.30 E-value=1.2e-07 Score=86.97 Aligned_cols=44 Identities=27% Similarity=0.723 Sum_probs=37.6
Q ss_pred CCCccccccccccCCCceeEeCCCCcc-ccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHV-FHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
+...|+||++.+.++ ..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 457899999998765 5667 9999 999999988 789999998853
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.27 E-value=2.7e-07 Score=63.64 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=40.7
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..|+||++.+.++ .+++.|||.|...||.+|+..+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999999987 4552499999999999999888899999988754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.14 E-value=1.5e-06 Score=65.18 Aligned_cols=46 Identities=37% Similarity=0.772 Sum_probs=37.2
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHc-CCCCcccccccccC
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-SHSNCPLCRAPVQL 171 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~~ 171 (264)
.|.+|--.+ ....++.| |+|+||.+|+..|.+ ..++||.|+.+|..
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 477785554 45578898 999999999999984 56789999999864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.95 E-value=9.1e-06 Score=70.76 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=40.2
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCC--CcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHS--NCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~v~~ 171 (264)
...+|.||.+.+..+ ..-+.|+|.||..|+..|++.+. .||.|+..+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467899999998866 34445999999999999997654 79999987653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.46 E-value=0.013 Score=43.25 Aligned_cols=50 Identities=22% Similarity=0.697 Sum_probs=39.1
Q ss_pred CCCCCCccccccccccCCCceeEeCCC-CccccHHHHHHHHcCCCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKC-RHVFHVDCIDMWFQSHSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C-~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~~ 172 (264)
..-.-..|-.|+-+.. + +.. | .|.+|..|+...+.....||+|+.++...
T Consensus 24 s~~G~~nCKsCWf~~k-~----LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK-G----LVE-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCSCCCCCCSSCSCCS-S----EEE-CSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccCcccChhhccccC-C----eee-ecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3344567999998753 2 333 6 59999999999999999999999988644
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.89 E-value=0.029 Score=38.79 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=35.7
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC----CCccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH----SNCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v~ 170 (264)
.......|.||.+. ..+..-..|...||..|++..+... -.||.|+....
T Consensus 8 ~~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 8 NLAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CCCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 34455779999753 3455555688999999999887543 25999987543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.84 E-value=0.058 Score=39.72 Aligned_cols=35 Identities=14% Similarity=0.414 Sum_probs=24.4
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHH
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 155 (264)
++..|.||.+.+..+....=+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3467999998643322112255 9999999999983
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.23 E-value=0.042 Score=37.33 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=34.6
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-----CCCCccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-----SHSNCPLCRAP 168 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 168 (264)
.+...|+||...+.+....+.-..|...||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456779999998865444444445889999999854321 34569999764
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.45 E-value=0.14 Score=42.49 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=35.0
Q ss_pred CCccccccccccCCCc---eeEeCCCCccccHHHHHH------HHc-----CCCCcccccccc
Q 024682 121 PLDCAVCLSEFEDNEN---GRVLPKCRHVFHVDCIDM------WFQ-----SHSNCPLCRAPV 169 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~---~~~lp~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~v 169 (264)
+..|+||...|.+++. .+.-..|...||..|+.- -+. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3569999999988763 444456899999999732 111 156899998754
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.50 E-value=0.15 Score=35.68 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=35.6
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCccccccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAPVQ 170 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~ 170 (264)
...+...|.||..... ++....-..|.-.||..|+..-... .-.||.|+..+.
T Consensus 14 ~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3345567999987753 3334444568889999999765432 345999987654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.27 E-value=0.35 Score=32.54 Aligned_cols=46 Identities=22% Similarity=0.536 Sum_probs=31.9
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCcccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRA 167 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 167 (264)
..++..|.||.+. ..+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456789999873 344444458889999999875432 225999975
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.82 E-value=0.58 Score=33.74 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHH
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 155 (264)
....+..|.||--- ...+ +.----|+-+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~-t~~~-l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVW-TAES-LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCC-CSSC-CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccc-cccc-eeccccccccccHhhcccc
Confidence 44567889999632 2221 1111128999999999986
No 81
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.78 E-value=0.73 Score=32.48 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=32.7
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHH-----cCCCCcccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF-----QSHSNCPLCRAPV 169 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~v 169 (264)
.+...| ||...+......+.-..|...||..|+.--- .....||.|+..-
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344567 9988875444344444588999999984221 1345699998754
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.31 E-value=0.2 Score=41.94 Aligned_cols=48 Identities=29% Similarity=0.439 Sum_probs=33.5
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCC----CCcccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSH----SNCPLCRAPV 169 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~v 169 (264)
..++..|.+|.+. ..+..-..|...||..|+.+.+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456779999754 3344445688999999998766432 3599998643
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.01 E-value=0.26 Score=33.15 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=31.3
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAP 168 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 168 (264)
..++..|.||.+. ..+..-..|...||..|+..-+.. .-.||.|+..
T Consensus 6 d~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456779999863 233333458889999999864432 2259999764
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.49 E-value=0.32 Score=39.90 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=32.4
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCcccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAPV 169 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v 169 (264)
++..|.+|.+. ..+..-..|...||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 334444568889999999776643 23599998643
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=83.33 E-value=0.83 Score=29.53 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=28.8
Q ss_pred ccccccccccCCCceeEeC-CCCccccHHHHHHH----HcCCCCccccc
Q 024682 123 DCAVCLSEFEDNENGRVLP-KCRHVFHVDCIDMW----FQSHSNCPLCR 166 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~w----l~~~~~CP~Cr 166 (264)
.|.+|...+.+++.-+.-. .|...||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886554444444 48889999997421 13456799885
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.49 E-value=0.25 Score=32.60 Aligned_cols=47 Identities=26% Similarity=0.577 Sum_probs=31.4
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCcccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRA 167 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 167 (264)
...++..|.||.+. ..+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 5 ~~~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34456779999874 234444458889999999864432 224888854
No 87
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.33 E-value=1.1 Score=30.58 Aligned_cols=34 Identities=24% Similarity=0.649 Sum_probs=25.3
Q ss_pred CCCCccccccccccCCCceeEeC-CCCccccHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLP-KCRHVFHVDCI 152 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci 152 (264)
.....|.+|...+.+.+..+.-. .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34567999999987766555555 69999999998
No 88
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=81.75 E-value=0.82 Score=36.90 Aligned_cols=49 Identities=18% Similarity=0.524 Sum_probs=32.7
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHH-----cCCCCccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF-----QSHSNCPLCRAP 168 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~ 168 (264)
.+...| +|...+.+......-..|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 455679 9998865444444444688999999984211 234579999864
No 89
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.73 E-value=0.75 Score=33.28 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCCCCccccccccc-cCCCceeEeCCCCccccHHHHHHHHc--CCCCccccccccc
Q 024682 118 PKEPLDCAVCLSEF-EDNENGRVLPKCRHVFHVDCIDMWFQ--SHSNCPLCRAPVQ 170 (264)
Q Consensus 118 ~~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~v~ 170 (264)
..++..|.||.+.- .+.+.+..-..|.-.||..|+..-.. ..-.||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34567899998753 22334444456888999999975321 2235999976543
No 90
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.55 E-value=0.44 Score=33.04 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHH----cCCCCcccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF----QSHSNCPLCRAPV 169 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~v 169 (264)
.+...| ||...+.+++..+.-..|...||..|+.--- .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 344668 7988765554344444588999999985431 2345699997643
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.35 E-value=0.94 Score=31.58 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=30.7
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHH---------HcCCCCcccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMW---------FQSHSNCPLCRAPV 169 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w---------l~~~~~CP~Cr~~v 169 (264)
...| ||...+... ..+.-..|...||..|+.-- ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 898876532 23333458899999998321 12466799998654
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.05 E-value=0.56 Score=34.25 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=33.7
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCcccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAPV 169 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v 169 (264)
..+...|.||...-. .+.+..-..|...||..|+.+=+.. .-.||.|+...
T Consensus 13 ~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 13 FIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 345567999987632 2334444568899999999754332 22599997643
No 93
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=78.57 E-value=1.2 Score=29.82 Aligned_cols=43 Identities=35% Similarity=0.633 Sum_probs=31.6
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLC 165 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~C 165 (264)
..|--|...|.+. ....-+.|++.|+.+|=.---+.-.+||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998543 235577899999999954443555679988
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.08 E-value=0.53 Score=32.07 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=31.7
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAP 168 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 168 (264)
.++..|.||.+. ..+..-..|...||..|+..-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999864 344444568889999999864432 2259999753
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.45 E-value=1.2 Score=30.96 Aligned_cols=51 Identities=16% Similarity=0.399 Sum_probs=33.7
Q ss_pred CCCCCccccccccc-cCCCceeEeCCCCccccHHHHHHHH--cCCCCccccccc
Q 024682 118 PKEPLDCAVCLSEF-EDNENGRVLPKCRHVFHVDCIDMWF--QSHSNCPLCRAP 168 (264)
Q Consensus 118 ~~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fh~~Ci~~wl--~~~~~CP~Cr~~ 168 (264)
..++..|.||.+.- .+.+.+..-..|.-.||..|+..-. ...=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567899998763 3344555555688999999997532 112258888653
No 96
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=76.75 E-value=1.8 Score=44.26 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCCCCCccccccccccCCCceeEeCCCC-ccccHHHHHHHHcCCCCcccccccccC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCR-HVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
+..+...|+|-++.+.+| .++| -| +.|-..+|.+|+..+.+||.=|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345667899999999998 5566 66 689999999999999999999988764
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.17 E-value=0.71 Score=30.72 Aligned_cols=46 Identities=26% Similarity=0.601 Sum_probs=31.5
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCcccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAPV 169 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v 169 (264)
++..|.||... ..+..-..|...||..|+..-+.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999874 334444468889999999864432 22599997644
No 98
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.90 E-value=1.6 Score=27.78 Aligned_cols=44 Identities=25% Similarity=0.630 Sum_probs=28.5
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCcccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRA 167 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 167 (264)
.|.||...-. ++.+..-..|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888886532 2344444568899999999754432 224999865
No 99
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.77 E-value=1.3 Score=31.19 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=30.1
Q ss_pred CCCccccccccccCCCceeEeC--CCCccccHHHHHHHH---------cCCCCcccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLP--KCRHVFHVDCIDMWF---------QSHSNCPLCRAPV 169 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl---------~~~~~CP~Cr~~v 169 (264)
+...| ||-.....+ ..+.-. .|...||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45668 798874333 222222 488999999985321 1345699998643
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.24 E-value=1.1 Score=33.71 Aligned_cols=45 Identities=24% Similarity=0.580 Sum_probs=30.0
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCcccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRA 167 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 167 (264)
.|.||.+.-.+.+.+..-..|...||..|+++-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888653333344555568899999999765533 225998874
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.97 E-value=5 Score=31.63 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=32.7
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-----------CCCCcccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-----------SHSNCPLCRA 167 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 167 (264)
...+..|.+|.+- .++..-..|-..||..||..-+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4556889999874 34444445888999999997652 1225999974
No 102
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.92 E-value=2.2 Score=31.06 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=28.1
Q ss_pred CCCCccccccccccCCCceeEeCC--CC-ccccHHHHHHHHcC----CCCcccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPK--CR-HVFHVDCIDMWFQS----HSNCPLCRAPV 169 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~v 169 (264)
.+...| ||..... + ..+.-.. |. ..||..|+. +.. .-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345667 9988642 2 2222223 55 589999996 322 34699998654
No 103
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=71.79 E-value=1.2 Score=30.54 Aligned_cols=47 Identities=19% Similarity=0.490 Sum_probs=30.2
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHH---cCCCCcccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF---QSHSNCPLCRA 167 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 167 (264)
.+...| ||...+. ++..+.-..|...||..|+.--- .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455678 9988754 33333344588999999985422 12346998865
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=71.42 E-value=1.9 Score=32.20 Aligned_cols=49 Identities=27% Similarity=0.578 Sum_probs=33.3
Q ss_pred CCccccccccccCCCceeEeC-CCCccccHHHHHHHH----------cCCCCcccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLP-KCRHVFHVDCIDMWF----------QSHSNCPLCRAPV 169 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp-~C~H~fh~~Ci~~wl----------~~~~~CP~Cr~~v 169 (264)
...|.||...+.+......-. .|...||..|+.--- ...-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 356999999986654444443 588899999983211 1344699998754
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.26 E-value=1.4 Score=31.91 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=32.3
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCccccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAP 168 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 168 (264)
..++..|.+|.+. + .+..-..|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999875 3 34444457788999999775543 2259999753
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.95 E-value=2.5 Score=28.37 Aligned_cols=52 Identities=17% Similarity=0.399 Sum_probs=34.5
Q ss_pred CCCCCccccccccccC-CCceeEeCCCCccccHHHHHHHHc-------CCCCcccccccc
Q 024682 118 PKEPLDCAVCLSEFED-NENGRVLPKCRHVFHVDCIDMWFQ-------SHSNCPLCRAPV 169 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~v 169 (264)
..++..|.||...... ...+..-..|...||..|+..-+. ..-.|+.|+...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3456789999986533 344555556888999999875331 223599997643
No 107
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.61 E-value=3.8 Score=28.26 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=28.1
Q ss_pred CCCCccccccccccCCCceeEeCC--CC-ccccHHHHHHHHcC----CCCcccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPK--CR-HVFHVDCIDMWFQS----HSNCPLCRAPV 169 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~v 169 (264)
.+...| ||..... + ..+.-.. |. ..||..|+. +.. .-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345668 8987642 2 2222233 55 589999997 322 33599997643
No 108
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=69.48 E-value=1.9 Score=31.70 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHc---CCCCcccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ---SHSNCPLCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 167 (264)
+...| ||-.....+ ..+.-..|.-.||..|+..-.. ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 887765443 3444456889999999865322 1346999974
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.04 E-value=8.3 Score=28.72 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=30.1
Q ss_pred CCCccccccccc-----cCCCceeEeCCCCccccHHHHHHH------H-cCCCCccccc
Q 024682 120 EPLDCAVCLSEF-----EDNENGRVLPKCRHVFHVDCIDMW------F-QSHSNCPLCR 166 (264)
Q Consensus 120 ~~~~C~ICl~~~-----~~~~~~~~lp~C~H~fh~~Ci~~w------l-~~~~~CP~Cr 166 (264)
....|.+|+..- ..++++..-..|+..||..|+..+ + ...-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456799998753 223445555569999999999531 2 2233577775
No 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.59 E-value=1.9 Score=32.14 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=31.3
Q ss_pred CCCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCccccc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCR 166 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr 166 (264)
..++..|.||.+.=.. +.+..-..|+..||..|+...+.. .-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567789999876221 122333458999999999887642 22477664
No 111
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.23 E-value=12 Score=26.56 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=28.3
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS 158 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~ 158 (264)
.....|.+|.+.+++..-+.--..=.|.||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3457899999999887533211113599999999888754
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.85 E-value=1.6 Score=35.98 Aligned_cols=44 Identities=27% Similarity=0.572 Sum_probs=29.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcC----CCCccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----HSNCPLCRAP 168 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 168 (264)
+..|.+|.+. + .+..-..|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3569999864 3 33334457789999999764432 2259999765
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.10 E-value=7.9 Score=29.98 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=31.7
Q ss_pred CCCCCCccccccccccCCCceeEeCCCCccccHHHHHHHH------c-----CCCCcccccc
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF------Q-----SHSNCPLCRA 167 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl------~-----~~~~CP~Cr~ 167 (264)
+...+..|.||-+- ..+..-..|-..||..||..-+ + ..=.|+.|+-
T Consensus 53 ~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34556779999864 3344444588999999999752 1 1235999965
No 114
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=62.72 E-value=2.6 Score=28.02 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=26.7
Q ss_pred CCCCccccccccccCCCceeEeCC--CC-ccccHHHHHHHHcC----CCCcccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPK--CR-HVFHVDCIDMWFQS----HSNCPLCRA 167 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 167 (264)
.+...| ||..... + ....-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345667 8988642 3 2333334 55 689999997 322 335999965
No 115
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.15 E-value=1.2 Score=34.28 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=31.9
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 169 (264)
+...|..|-..|..-..-..-..||.+||..|..........|-.|..-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 34579999999865432233345999999999776655566788886543
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=62.15 E-value=7.4 Score=29.08 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCCCCCccccccccccCCCceeEeC--CCCccccHHHHHHHHcC----CCCcccccccccCC
Q 024682 117 DPKEPLDCAVCLSEFEDNENGRVLP--KCRHVFHVDCIDMWFQS----HSNCPLCRAPVQLD 172 (264)
Q Consensus 117 ~~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~v~~~ 172 (264)
...++..|.+|.+. + .+..-. .|...||..|+. +.. .-.||.|+..+...
T Consensus 11 ~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred cCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 34566789999842 2 333333 377899999997 433 22499887766543
No 117
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=60.61 E-value=16 Score=23.84 Aligned_cols=7 Identities=0% Similarity=-0.272 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 024682 30 GKIMFCS 36 (264)
Q Consensus 30 ~~i~l~~ 36 (264)
.++++.+
T Consensus 12 ~wiIi~s 18 (54)
T 2knc_A 12 IWWVLVG 18 (54)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3444333
No 118
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=59.90 E-value=5.3 Score=27.80 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=14.3
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024682 24 SSYVLNGKIMFCSVILLFVVVFILVCFHSYASWLRYRHRH 63 (264)
Q Consensus 24 ~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~~~~~~ 63 (264)
+.|.++.--+=+.-+++.+|++++.+++++.+.++++.++
T Consensus 10 dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~~q 49 (74)
T 2zxe_G 10 ERFTYDYYRLRVVGLIVAAVLCVIGIIILLAGKCRCKFNQ 49 (74)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred CCcccchHHheeccchhHHHHHHHHHHHHHcCccccCCCC
Confidence 3344444433333333344444444444444444444433
No 119
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=59.89 E-value=20 Score=24.41 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=18.1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024682 24 SSYVLNGKIMFCSVILLFVVVFILVCFHSYASWLRYRHRH 63 (264)
Q Consensus 24 ~~~~~~~~i~l~~iilL~~vv~l~v~l~~~~~~~~~~~~~ 63 (264)
+.|-++.--+=+.-+++.+|++++.+++++...++++.++
T Consensus 8 dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~~q 47 (67)
T 2jp3_A 8 SPFYYDWESLQLGGLIFGGLLCIAGIALALSGKCKCRRNH 47 (67)
T ss_dssp SGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTC
T ss_pred CCcccchHHheecchhhHHHHHHHHHHHHHcCcccccCCC
Confidence 4455555434333334444444444444554444444443
No 120
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=59.70 E-value=2.9 Score=27.82 Aligned_cols=44 Identities=25% Similarity=0.581 Sum_probs=26.1
Q ss_pred CCCCccccccccccCCCceeEeCC--CC-ccccHHHHHHHHcC----CCCcccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPK--CR-HVFHVDCIDMWFQS----HSNCPLCRA 167 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 167 (264)
.+...| ||..... + ....-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 ~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345567 8988632 2 2333334 44 579999997 322 335999864
No 121
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=59.45 E-value=8.6 Score=24.11 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 40 LFVVVFILVCFHSYAS 55 (264)
Q Consensus 40 L~~vv~l~v~l~~~~~ 55 (264)
+++++++++..++|.+
T Consensus 20 v~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333344433344443
No 122
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=59.06 E-value=6.2 Score=36.01 Aligned_cols=49 Identities=18% Similarity=0.487 Sum_probs=31.5
Q ss_pred CccccccccccCCCceeEeCCCCccccHH--HHHHHHcC--CCCcccccccccCCC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVD--CIDMWFQS--HSNCPLCRAPVQLDI 173 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~--Ci~~wl~~--~~~CP~Cr~~v~~~~ 173 (264)
..|++-+..+..| ++-.. |.|.-|.+ =+.....+ .-.||+|...+....
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 5799988888777 45555 99984433 23222222 335999998875543
No 123
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=58.60 E-value=6.8 Score=27.56 Aligned_cols=36 Identities=25% Similarity=0.531 Sum_probs=25.5
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM 154 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 154 (264)
.+...|.+|...|..-..-..--.||++||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345679999999975432233335999999999754
No 124
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.48 E-value=7.7 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=26.3
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 155 (264)
.+...|.+|...|..-..-..--.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4556899999999755332333359999999997553
No 125
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=57.03 E-value=18 Score=26.14 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=35.5
Q ss_pred CCCccccccccccCCC--ceeEe-CCCCccccHHHHHHHH-cCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNE--NGRVL-PKCRHVFHVDCIDMWF-QSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~--~~~~l-p~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~v~~ 171 (264)
....|.||-+++-... ++.+. -.|+--.|..|++--. +.++.||.|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4468999999964332 12221 1266678999997654 457789999998863
No 126
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=56.97 E-value=27 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 024682 39 LLFVVVFILVCFHSYASWLRYRHRH 63 (264)
Q Consensus 39 lL~~vv~l~v~l~~~~~~~~~~~~~ 63 (264)
++.++++++.+++++...+.++.++
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~q 46 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQ 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCC
Confidence 3333344444444455555554443
No 127
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=56.96 E-value=6.2 Score=28.35 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=26.4
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHH
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWF 156 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl 156 (264)
+...|.+|...|..-..-..-..||++||..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4467999999987543333344599999999976543
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=56.55 E-value=8 Score=27.71 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=25.8
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM 154 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 154 (264)
.+...|.+|...|..-..-..--.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 455689999999875532233335999999999754
No 129
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.24 E-value=7.7 Score=26.63 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=23.1
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHH
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCID 153 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~ 153 (264)
..|.+|...|..-..-..--.||++||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 57999999987543222333599999999964
No 130
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=56.15 E-value=7.4 Score=35.35 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=31.2
Q ss_pred CccccccccccCCCceeEeCCCCcc--ccHHHHHHHHcC--CCCcccccccccCC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHV--FHVDCIDMWFQS--HSNCPLCRAPVQLD 172 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~--fh~~Ci~~wl~~--~~~CP~Cr~~v~~~ 172 (264)
..|+|=+..+..| ++-.. |.|. |-..=+..+..+ .-.||+|.+.+...
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 5699988888777 45554 9998 443333333322 33599999988543
No 131
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.07 E-value=2.5 Score=29.70 Aligned_cols=44 Identities=20% Similarity=0.605 Sum_probs=28.2
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC-----CCCcccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-----HSNCPLCRA 167 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 167 (264)
.|.||...- ++..+..-..|...||..|+++=+.. .=.||.|..
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888642 23344444468899999999854322 225888864
No 132
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=55.73 E-value=1.3 Score=30.23 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=26.8
Q ss_pred CCCccccccccccCCCceeEeC--CCCccccHHHHHHHH---c-----CCCCcccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLP--KCRHVFHVDCIDMWF---Q-----SHSNCPLCRA 167 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl---~-----~~~~CP~Cr~ 167 (264)
+...| ||-.....+. .+.-- .|...||..|+.--- . .+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34557 7966544442 22221 388899999983211 0 1356999974
No 133
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.48 E-value=6.5 Score=30.11 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=24.8
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHH
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM 154 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 154 (264)
+...|.+|...|..-..-..--.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34679999999875432233335999999999644
No 134
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=55.29 E-value=2.4 Score=29.83 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=26.3
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC----C-CCcccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS----H-SNCPLCRA 167 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~ 167 (264)
.|.||...- +++.+..-..|...||..|++.-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355665542 22334444458889999999865532 1 35888875
No 135
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=55.11 E-value=2.9 Score=28.74 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=26.5
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC-----CCCcccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-----HSNCPLCRA 167 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 167 (264)
.|.||...- ++..+..-..|...||..|+++=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455776531 22334444458899999999854422 225888865
No 136
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.01 E-value=2.4 Score=30.55 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=33.9
Q ss_pred CCccccccccccC-CCceeEeCCCCccccHHHHHHHHc--------CCCCccccccccc
Q 024682 121 PLDCAVCLSEFED-NENGRVLPKCRHVFHVDCIDMWFQ--------SHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~-~~~~~~lp~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~v~ 170 (264)
+..|.||...-.. ...+..-..|...||..|+..-+. ..-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4679999986433 234455556889999999976543 1235999977543
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=53.88 E-value=7.9 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=28.6
Q ss_pred Ccccccccccc------CCCceeEeCCCCccccHHHHHHHH-------cCCCCccccc
Q 024682 122 LDCAVCLSEFE------DNENGRVLPKCRHVFHVDCIDMWF-------QSHSNCPLCR 166 (264)
Q Consensus 122 ~~C~ICl~~~~------~~~~~~~lp~C~H~fh~~Ci~~wl-------~~~~~CP~Cr 166 (264)
..|.||+..-. +++.+..-..|+..||..|+..+. ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987541 223444445699999999987542 1233577774
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.40 E-value=8.7 Score=27.08 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHH
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCID 153 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~ 153 (264)
.+...|.+|...|..-..-..--.||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34568999999986443222223499999999853
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.70 E-value=6.3 Score=32.91 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=25.0
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHH
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDM 154 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~ 154 (264)
++..|.+|...|..-..-..-..||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35789999999865432233345999999999654
No 140
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.52 E-value=12 Score=26.19 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
.....|..|-+.+.. +. +.. -+..||.+| ..|-.|+..+..
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cE--EEE-CCceECccC--------CEecCCCCCCCC
Confidence 345679999998875 22 333 678899988 578999887753
No 141
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=52.30 E-value=7.3 Score=30.29 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCCcccccccccc-CCCceeEeCCCCccccHHHHHHHHcC-CC---Cccccccc
Q 024682 120 EPLDCAVCLSEFE-DNENGRVLPKCRHVFHVDCIDMWFQS-HS---NCPLCRAP 168 (264)
Q Consensus 120 ~~~~C~ICl~~~~-~~~~~~~lp~C~H~fh~~Ci~~wl~~-~~---~CP~Cr~~ 168 (264)
+...|.+|...|. .......-..|+|.+|..|-..-... +. .|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4578999999993 33333455569999999996432111 11 38888764
No 142
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=52.19 E-value=4.3 Score=38.43 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-----CCCCcccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-----SHSNCPLCRAPV 169 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~v 169 (264)
.+...| ||...+......+....|.-.||..|+.---. ..-.||.|+...
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 344556 99887654444444456899999999943221 234699998654
No 143
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.79 E-value=3.7 Score=34.97 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=25.1
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcC-----CCCccccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQS-----HSNCPLCRAP 168 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~ 168 (264)
.|.+|...- ++..+..-..|...||..|+++=+.. .=.||.|+..
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 577887531 22334444458899999999854432 2259999753
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.45 E-value=7 Score=32.93 Aligned_cols=36 Identities=17% Similarity=0.447 Sum_probs=25.8
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHH
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMW 155 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w 155 (264)
++..|.+|...|..-..-..-..||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999998755333334459999999997543
No 145
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=49.79 E-value=8.5 Score=26.53 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=30.4
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHc-----CCCCcccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-----SHSNCPLCRAPV 169 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~v 169 (264)
...| ||...+......+.-..|.-.||..|+.---. ....||.|+...
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3445 89877654433444445888999999953221 245699997643
No 146
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=48.31 E-value=6.3 Score=26.36 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=26.6
Q ss_pred CCCCccccccccccCCCceeEeCC--CC-ccccHHHHHHHH--cCCCCcccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPK--CR-HVFHVDCIDMWF--QSHSNCPLCRA 167 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fh~~Ci~~wl--~~~~~CP~Cr~ 167 (264)
.+...| ||.... .+ ..+.-.. |. ..||..|+.--- ...-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 345667 898863 23 2333334 44 789999996211 12335999965
No 147
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=46.87 E-value=5.6 Score=25.42 Aligned_cols=41 Identities=20% Similarity=0.467 Sum_probs=24.7
Q ss_pred cccccccCCCceeEeCCCCccccHHHHHHHH---cCCCCcccccc
Q 024682 126 VCLSEFEDNENGRVLPKCRHVFHVDCIDMWF---QSHSNCPLCRA 167 (264)
Q Consensus 126 ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 167 (264)
||..... +...+.-..|+..||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5766543 22333334588899999985322 23456998875
No 148
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=45.69 E-value=4.4 Score=37.04 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHc-------CCCCccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQ-------SHSNCPLCRAP 168 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~ 168 (264)
+...|.+|...|..-..-.....||++||..|-..++. ....|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 35679999998864422222234999999999876541 12347777543
No 149
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.63 E-value=20 Score=23.96 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=29.9
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
....|+-|-..+...+.+... -+..||..| ..|-.|+.++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 446799999988754443322 577899888 478889887753
No 150
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=44.57 E-value=51 Score=19.96 Aligned_cols=6 Identities=33% Similarity=0.633 Sum_probs=2.1
Q ss_pred HHHHHH
Q 024682 48 VCFHSY 53 (264)
Q Consensus 48 v~l~~~ 53 (264)
++++.|
T Consensus 27 IllI~y 32 (40)
T 1afo_A 27 ILLISY 32 (40)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 151
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.07 E-value=5.8 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=15.8
Q ss_pred CCCccccHHHHHHHHcCCCCccccccccc
Q 024682 142 KCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 142 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
+||+.|. .=+.....||.|+..-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 4899881 12234567999998654
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.12 E-value=19 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=28.6
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..|+.|-..+...+.+... -+..||..| .+|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4699999988765433322 577899888 478889887653
No 153
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=41.45 E-value=3 Score=29.38 Aligned_cols=15 Identities=20% Similarity=0.693 Sum_probs=13.0
Q ss_pred CCCccccHHHHHHHH
Q 024682 142 KCRHVFHVDCIDMWF 156 (264)
Q Consensus 142 ~C~H~fh~~Ci~~wl 156 (264)
.|+|.||..|...|-
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 589999999998883
No 154
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.24 E-value=20 Score=24.64 Aligned_cols=40 Identities=25% Similarity=0.575 Sum_probs=30.1
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
....|.-|-..+...+.+.. -+..||..| ..|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34679999998876654443 577899888 58999988774
No 155
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.19 E-value=24 Score=23.21 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=28.7
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|..|-..+...+.+ +.. -+..||..| .+|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEY-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECS-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEE-CccccCccc--------CeECCCCCcCCC
Confidence 35699999988754332 222 678899888 478889887653
No 156
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=41.07 E-value=23 Score=28.33 Aligned_cols=36 Identities=19% Similarity=0.487 Sum_probs=26.1
Q ss_pred CCCCCccccccccccCCCceeEeC--CCCccccHHHHHHHHc
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLP--KCRHVFHVDCIDMWFQ 157 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl~ 157 (264)
...+..|.||-+- ..+..-. .|...||..||+.++.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3456789999863 3444433 4888999999999874
No 157
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=40.47 E-value=57 Score=19.37 Aligned_cols=10 Identities=10% Similarity=-0.234 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 024682 47 LVCFHSYASW 56 (264)
Q Consensus 47 ~v~l~~~~~~ 56 (264)
++..+.|..|
T Consensus 20 VVWtiv~ieY 29 (36)
T 1pi7_A 20 VVWSIVIIEG 29 (36)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 158
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.04 E-value=15 Score=24.71 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|+.|-+.+...+.+. . -+..||..| .+|-.|+..+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCC--------CCCCCCCCccCC
Confidence 457999999987665433 2 678899888 579999887753
No 159
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=40.00 E-value=38 Score=23.04 Aligned_cols=17 Identities=18% Similarity=-0.129 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024682 39 LLFVVVFILVCFHSYAS 55 (264)
Q Consensus 39 lL~~vv~l~v~l~~~~~ 55 (264)
+|..++.+++++-+.+.
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33333333333333333
No 160
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.55 E-value=25 Score=24.13 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=30.2
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
....|+.|-..+...+.+. . -+..||..| ..|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCC
Confidence 4467999999886655443 2 578899988 578899887754
No 161
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.16 E-value=24 Score=23.24 Aligned_cols=40 Identities=33% Similarity=0.718 Sum_probs=26.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|..|-..+...+.. +.. -+..||..| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVA-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EEC-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceE-EEE-CCCeEcccC--------CcccccCCcCC
Confidence 35688888877653322 222 567888887 47888887773
No 162
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.04 E-value=33 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=29.2
Q ss_pred CCCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
.....|+-|-..+. ++. +..-+..||..| .+|-.|+.++..
T Consensus 13 ~~~~~C~~C~~~I~-~~~---v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQP---LIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCC-SCC---CCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred cCCCCCccCCCEec-ceE---EEECcceeCCCC--------CEeCCCCCccCC
Confidence 34567999999887 322 222678899888 589999888763
No 163
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.25 E-value=27 Score=23.00 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=28.3
Q ss_pred CCccccccccccC--CCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFED--NENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~--~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|.-|-..+.. .+.+ +.. -+..||..| .+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISF-EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EEC-SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEE-CCcccCccc--------CEeccCCCcCC
Confidence 4569999998875 2222 233 678899888 48889988775
No 164
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.84 E-value=35 Score=21.01 Aligned_cols=7 Identities=0% Similarity=-0.272 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 024682 30 GKIMFCS 36 (264)
Q Consensus 30 ~~i~l~~ 36 (264)
.++++.+
T Consensus 10 ~wiIi~s 16 (42)
T 2k1a_A 10 IWWVLVG 16 (42)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3433333
No 165
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.00 E-value=27 Score=31.95 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=31.4
Q ss_pred CCCCccccccccccCCCceeEeC--CCCccccHHHHHHHHcC----------CCCccccccc
Q 024682 119 KEPLDCAVCLSEFEDNENGRVLP--KCRHVFHVDCIDMWFQS----------HSNCPLCRAP 168 (264)
Q Consensus 119 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr~~ 168 (264)
..+..|.+|-+- ..+..-. .|...||..||+.++.. .=.|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 445678888763 3445444 58899999999999832 2258888643
No 166
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=35.88 E-value=14 Score=24.91 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=21.5
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
.|+.|-+.+..++.+. . -+..||..| ..|-.|+.++.
T Consensus 2 ~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVT--S-LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEE--E-TTEEEETTT--------CBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEE--E-CCccccCCC--------CCccccCccCC
Confidence 3666766665443322 2 466777766 46777766654
No 167
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.38 E-value=26 Score=23.74 Aligned_cols=41 Identities=20% Similarity=0.473 Sum_probs=29.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|..|-..+...+.+. .. -+..||..| .+|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EY-KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-EC-SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE-EE-Ccccccccc--------CchhhCCCccCC
Confidence 357999999887655432 22 578899888 478899887753
No 168
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=35.27 E-value=37 Score=26.15 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024682 32 IMFCSVILLFVVVFILVCFHSYASWL 57 (264)
Q Consensus 32 i~l~~iilL~~vv~l~v~l~~~~~~~ 57 (264)
++.|.+++.|+.++++.++..|+|-.
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSK 78 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSK 78 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhh
Confidence 45555666666666666666666533
No 169
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.03 E-value=19 Score=24.42 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
....|.-|-..+... .+.. -+..||..| .+|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKL-RDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEEC-SSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEE-CcceeCcCc--------CeeCCCCCCCC
Confidence 346799999987652 2333 678899988 47888988764
No 170
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=34.48 E-value=24 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.447 Sum_probs=29.7
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|+.|-..+...+.+.. . -+..||..|. .|-.|...+..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-S-NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-E-TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEE-e-CcCeeCcCCC--------cccCCCCCCCC
Confidence 4579999999876654332 2 5778998884 78889887753
No 171
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.14 E-value=31 Score=23.10 Aligned_cols=39 Identities=18% Similarity=0.455 Sum_probs=28.2
Q ss_pred CccccccccccC--CCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 122 LDCAVCLSEFED--NENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~--~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..|+.|-..+.. .... +.. -+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICF-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEE-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEE-CCcccCccc--------CChhhCCCcCC
Confidence 469999998875 2222 232 678899998 58999988775
No 172
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=33.98 E-value=15 Score=27.00 Aligned_cols=12 Identities=25% Similarity=0.855 Sum_probs=10.6
Q ss_pred cccHHHHHHHHc
Q 024682 146 VFHVDCIDMWFQ 157 (264)
Q Consensus 146 ~fh~~Ci~~wl~ 157 (264)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 173
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=33.91 E-value=16 Score=27.03 Aligned_cols=12 Identities=25% Similarity=0.999 Sum_probs=10.6
Q ss_pred cccHHHHHHHHc
Q 024682 146 VFHVDCIDMWFQ 157 (264)
Q Consensus 146 ~fh~~Ci~~wl~ 157 (264)
.||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999984
No 174
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.27 E-value=9.6 Score=22.50 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=8.4
Q ss_pred CCccccccccccCC
Q 024682 121 PLDCAVCLSEFEDN 134 (264)
Q Consensus 121 ~~~C~ICl~~~~~~ 134 (264)
...|+||+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 45677776665544
No 175
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.15 E-value=21 Score=28.28 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=31.1
Q ss_pred CCCccccccccccCCC-ceeEeCCCCccccHHHHHHHHcCCC--Cccccccc
Q 024682 120 EPLDCAVCLSEFEDNE-NGRVLPKCRHVFHVDCIDMWFQSHS--NCPLCRAP 168 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~ 168 (264)
++..|++|...|..-. ....-..|+|.+|..|- .|..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 4678999999874322 22334459999999997 2443222 38888664
No 176
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.92 E-value=28 Score=24.26 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=29.1
Q ss_pred CCCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
....|+.|-..+. ++ .+.. -+..||..| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~-~~--~v~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GP--FLVA-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SC--EEEE-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ce--EEEE-CCccccccC--------CccCCCCCCCCC
Confidence 4467999999884 32 2333 688999988 589999887753
No 177
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=32.45 E-value=52 Score=19.25 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024682 37 VILLFVVVFILVCFHSY 53 (264)
Q Consensus 37 iilL~~vv~l~v~l~~~ 53 (264)
+++|.+++.+.+.+++|
T Consensus 11 vl~LLviV~LgV~LI~f 27 (35)
T 2lk9_A 11 ILVLLIIVILGVPLIIF 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchheEE
Confidence 33444444444444444
No 178
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=32.16 E-value=20 Score=26.71 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=23.9
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 169 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 169 (264)
.|+.|-..+...+.+.. . -++.||..| ..|-.|...+
T Consensus 10 ~C~~C~~~I~~~e~~~~-a-~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR-V-KDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC-C-SSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE-E-CCccccccc--------CccccCCCCC
Confidence 58888887765433221 1 467788877 4677777766
No 179
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.48 E-value=4.4 Score=28.82 Aligned_cols=27 Identities=30% Similarity=0.776 Sum_probs=17.9
Q ss_pred EeCCCCccccHHHHHHHHcCCC--Ccccc
Q 024682 139 VLPKCRHVFHVDCIDMWFQSHS--NCPLC 165 (264)
Q Consensus 139 ~lp~C~H~fh~~Ci~~wl~~~~--~CP~C 165 (264)
.-+.|++.||..|-..|=+.|. +|..-
T Consensus 45 ~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp ECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred EeCCCCCccccccCCchhhcCCCCChHHH
Confidence 4456999999999888833333 45443
No 180
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.15 E-value=18 Score=20.37 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=17.8
Q ss_pred CccccccccccCCCceeEeCCCCccccHHH
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDC 151 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~C 151 (264)
..|+.|-..+-..+.+. - -|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccC
Confidence 46888888765554332 2 567888877
No 181
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=29.71 E-value=21 Score=18.72 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.3
Q ss_pred CchhhHHHHhhh
Q 024682 251 PGNRVLTLKRIW 262 (264)
Q Consensus 251 p~~r~~s~~r~~ 262 (264)
|++|-.||.|+|
T Consensus 3 p~aRk~SLqRFl 14 (21)
T 3ogl_Q 3 PIARRASLHRFL 14 (26)
T ss_pred chhHHHHHHHHH
Confidence 678999999987
No 182
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.00 E-value=30 Score=22.68 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|..|-..+.. +. +.. -+..||.+| .+|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV--IKA-MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CC--EEE-TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eE--EEE-CcccccccC--------CEeCCCCCcCCC
Confidence 4579999988763 22 222 577899888 478889887754
No 183
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.75 E-value=25 Score=23.91 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCCccccccccccCCCceeEeCCCC---ccccHHHHHHHH--cCCCCcccccccc
Q 024682 120 EPLDCAVCLSEFEDNENGRVLPKCR---HVFHVDCIDMWF--QSHSNCPLCRAPV 169 (264)
Q Consensus 120 ~~~~C~ICl~~~~~~~~~~~lp~C~---H~fh~~Ci~~wl--~~~~~CP~Cr~~v 169 (264)
+...| ||.... .+ ..+.-..|. ..||..|+.--- ...-.||.|+...
T Consensus 5 ~~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 44556 587652 22 222222342 689999996311 1233599997654
No 184
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.75 E-value=27 Score=26.19 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=28.9
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|+-|-..+.....+ .. -+..||..| .+|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v--~a-~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLL--YA-MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEE--EE-TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEE--Ee-CCcEEcccc--------cCcCcCCCccc
Confidence 45799999987654222 22 678899988 58999988775
No 185
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=27.89 E-value=56 Score=19.55 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024682 35 CSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 35 ~~iilL~~vv~l~v~l~~~ 53 (264)
..-+++..++++++.++++
T Consensus 3 tLKi~Vy~vV~ffvsLFiF 21 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFVF 21 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHHHHc
Confidence 3344445555555544443
No 186
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.59 E-value=34 Score=22.81 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=26.0
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..|+-|-..+... .+..-+..||.+| .+|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~----~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGR----VLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSC----CBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCe----eEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 4688888877642 2223678899888 47888888765
No 187
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.58 E-value=35 Score=22.00 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=27.7
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|+.|-..+. ++ .+.. -+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNA-MGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SC--EECC-TTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEec-ce--EEEE-CccccccCc--------CEECCCCCCCC
Confidence 356999999887 32 2333 678899888 57899988775
No 188
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.44 E-value=19 Score=24.51 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=28.3
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|..|-+.+...+.+ .. -+..||..| .+|-.|+.++..
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QC-DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EE-TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeE--Ee-CCccccccc--------CccCCCCCCCCC
Confidence 35699999988766533 22 678899887 468888887653
No 189
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=27.34 E-value=17 Score=34.00 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=30.8
Q ss_pred ccccccccccCCCceeEeCCCCccccHHHHHHH---H--cCCCCccccccccc
Q 024682 123 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMW---F--QSHSNCPLCRAPVQ 170 (264)
Q Consensus 123 ~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~w---l--~~~~~CP~Cr~~v~ 170 (264)
...||...+..+...+....|.-.||..|+.-- . ...-.||.|+..-.
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 345888876534434444458889999999421 1 13457999987554
No 190
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.04 E-value=38 Score=23.56 Aligned_cols=40 Identities=28% Similarity=0.608 Sum_probs=29.6
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
...|.-|-..+...+.+ .. -+..||..| ..|-.|...+..
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA-NQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC-SSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeE--EE-CCCEECCCC--------CeeCCCCCCCCC
Confidence 45799999998765533 33 678899988 478888887654
No 191
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.59 E-value=43 Score=21.79 Aligned_cols=38 Identities=21% Similarity=0.535 Sum_probs=27.2
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|..|-..+... . +.. -+..||..| .+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-G--VTY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS-E--EES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccc-e--EEE-CccccCCCC--------CccCCCCCcCC
Confidence 35699999888643 2 333 678899888 47888988774
No 192
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.33 E-value=42 Score=22.60 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=26.3
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..|+.|-+.+. +.. +.. -+..||..| ..|-.|+..+.
T Consensus 16 ~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MVA-GEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCC--BCC-TTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceE--EEE-CCceecccc--------CCccCCCCccC
Confidence 46999998877 222 222 678899887 47888988774
No 193
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.11 E-value=26 Score=25.73 Aligned_cols=40 Identities=25% Similarity=0.650 Sum_probs=24.8
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
..|++|..++.-. =++.+|..|-.. +.....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHH
Confidence 6799999886432 233334555322 244556999998875
No 194
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.08 E-value=48 Score=22.54 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCCCCccccccccccCCCceeEeCCC-CccccHHHHHHH
Q 024682 118 PKEPLDCAVCLSEFEDNENGRVLPKC-RHVFHVDCIDMW 155 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~~~~~~~~lp~C-~H~fh~~Ci~~w 155 (264)
.++..-|.||.++ ..++=+. | +-+||..|....
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 3456679999998 3355555 8 789999997664
No 195
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=23.92 E-value=1.2e+02 Score=18.15 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024682 33 MFCSVILLFVVVFILVCFHSY 53 (264)
Q Consensus 33 ~l~~iilL~~vv~l~v~l~~~ 53 (264)
..++..+..++++++++.|+.
T Consensus 8 ~~lan~lG~~~~~LIVlYH~v 28 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLYHYV 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 196
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=23.76 E-value=1e+02 Score=20.42 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 024682 20 NPSASSYVLNGKIMFCSVILLFVVVFILVCFH 51 (264)
Q Consensus 20 ~~~~~~~~~~~~i~l~~iilL~~vv~l~v~l~ 51 (264)
.|+...|.-..++..+.++++.++.+++=+++
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555555555555544444443333
No 197
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=22.33 E-value=93 Score=18.46 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024682 39 LLFVVVFILVCFHSYA 54 (264)
Q Consensus 39 lL~~vv~l~v~l~~~~ 54 (264)
+||+.+-.+.++++|+
T Consensus 12 ~Lfi~iPt~FLlilYv 27 (36)
T 3arc_M 12 ALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344344444444443
No 198
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=21.85 E-value=12 Score=24.98 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=20.5
Q ss_pred CCCCCCcccccccc-ccCCCceeEeCCCCccccHHHHHHHH
Q 024682 117 DPKEPLDCAVCLSE-FEDNENGRVLPKCRHVFHVDCIDMWF 156 (264)
Q Consensus 117 ~~~~~~~C~ICl~~-~~~~~~~~~lp~C~H~fh~~Ci~~wl 156 (264)
...+...|.||+.- |.++-.-.-. -|.-.||..|-..|-
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~-yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCS-YCQTKFCARCGGRVS 44 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBT-TTCCEECTTSEEEEE
T ss_pred ccCCcchhhhhccceeccCCCcccc-ccCCeeecccCCEee
Confidence 34566789999864 5444111111 144446666655543
No 199
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.77 E-value=51 Score=21.87 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=28.0
Q ss_pred CCccccccccccC---CCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFED---NENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~---~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|+-|-..+.. .... +.. -+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~-~~a-~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSV-VAY-EGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCE-EEE-TTEEEETTT--------CBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCcee-EEE-CcceeCccc--------CEehhcCCCCC
Confidence 3569999998874 2222 222 578899888 57999988775
No 200
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.33 E-value=53 Score=21.28 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCccccccccc
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 170 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 170 (264)
...|.-|-..+.. +.+ .. -+..||..| .+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGI--TY-QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCE--EE-TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceE--EE-CccccccCc--------CEECCCCCCCC
Confidence 3568889888753 332 22 577888887 47888888764
No 201
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.75 E-value=64 Score=20.90 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=10.0
Q ss_pred CCCCCcccccccccc
Q 024682 118 PKEPLDCAVCLSEFE 132 (264)
Q Consensus 118 ~~~~~~C~ICl~~~~ 132 (264)
.-+...|++|...+.
T Consensus 7 lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 7 LLEILACPACHAPLE 21 (56)
T ss_dssp CTTSCCCSSSCSCEE
T ss_pred HHhheeCCCCCCcce
Confidence 345567888887654
No 202
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.54 E-value=35 Score=23.05 Aligned_cols=38 Identities=32% Similarity=0.621 Sum_probs=27.4
Q ss_pred CccccccccccCCCceeEeCCCCccccHHHHHHHHcCCCCcccccccccC
Q 024682 122 LDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQL 171 (264)
Q Consensus 122 ~~C~ICl~~~~~~~~~~~lp~C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 171 (264)
..|+.|-..+. ++. +.. -+..||..| .+|-.|+.++..
T Consensus 16 ~~C~~C~~~I~-~~~--v~a-~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEV--VSA-LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--EEE-TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cce--EEE-CCceeCccC--------CccccCCCCCCC
Confidence 47999999877 332 222 678899888 478899887753
No 203
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.46 E-value=42 Score=22.06 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=8.4
Q ss_pred CCcccccccccCCCc
Q 024682 160 SNCPLCRAPVQLDIT 174 (264)
Q Consensus 160 ~~CP~Cr~~v~~~~~ 174 (264)
+.||.|+..|....+
T Consensus 7 k~CP~C~~~Iek~~G 21 (60)
T 1wd2_A 7 KECPKCHVTIEKDGG 21 (60)
T ss_dssp CCCTTTCCCCSSCCS
T ss_pred eECcCCCCeeEeCCC
Confidence 346666666655433
No 204
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.16 E-value=1e+02 Score=20.53 Aligned_cols=36 Identities=17% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCccccccccccCCCceeEeCCCCccccHH-HHHHHH
Q 024682 121 PLDCAVCLSEFEDNENGRVLPKCRHVFHVD-CIDMWF 156 (264)
Q Consensus 121 ~~~C~ICl~~~~~~~~~~~lp~C~H~fh~~-Ci~~wl 156 (264)
...|+-|-..+..++........-|.||.. ||...-
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 567999999999998888777688999854 887753
Done!