BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024684
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SI62|POED2_ARATH Polyprenol reductase 2 OS=Arabidopsis thaliana GN=At2g16530 PE=1
SV=2
Length = 343
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/179 (56%), Positives = 126/179 (70%), Gaps = 11/179 (6%)
Query: 8 LLRAAWVA----GILPLIIASLPSSRLNSFHGALLGFAKRGKIMQSSSHKFTVPQRFFCH 63
L+R AW+ ILPL+IAS+P+S+LNSF +L FA RGKI+ SS KFT+PQ+ F H
Sbjct: 9 LVRGAWITVWIVSILPLVIASIPTSKLNSFRELVLSFAGRGKILHPSSQKFTIPQKCFAH 68
Query: 64 FYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSLYSTIASHLTGGSHMFSFHKSHLTLLQHR 123
FYV+ VVWTTLLL W YA KMAP SE S IAS L GGS +FS HKS++T ++HR
Sbjct: 69 FYVIGVVWTTLLLAATWMYACKMAPLSSEEFQLSDIASRLAGGSDVFSVHKSNMTPVEHR 128
Query: 124 HRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGLLVH-------CENV 175
+VW +VF+LLLMEI V+RRLIE+ Y F+YSPSARMHI GY GL + C N+
Sbjct: 129 FKVWRAVFLLLLMEIHVLRRLIESFYVFKYSPSARMHILGYFAGLFFYVTAPLSLCSNI 187
>sp|Q9CAH5|POED1_ARATH Polyprenol reductase 1 OS=Arabidopsis thaliana GN=At1g72590 PE=3
SV=1
Length = 320
Score = 167 bits (422), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 119/186 (63%), Gaps = 31/186 (16%)
Query: 1 MESWLAGLLRAAWVA----GILPLIIASLPSSRLNSFHGALLGFAKRGKIMQSSSHKFTV 56
ME + L++AAW+ ILPL+IAS+PSS+LNSF +L FA RGKI+ SS KFTV
Sbjct: 1 MEVEIVWLVKAAWITVWIVSILPLVIASIPSSKLNSFRELVLSFAGRGKILHPSSQKFTV 60
Query: 57 PQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSLYSTIASHLTGGSHMFSFHKSH 116
PQ+FF HFYVV VVWTTLLL W YA KMA GGSH+FSFH +H
Sbjct: 61 PQKFFGHFYVVGVVWTTLLLAATWMYACKMA-----------------GGSHVFSFHMTH 103
Query: 117 LTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGLLVH----- 171
++HR +V +VF+LLLMEI V+RR+IE+ Y F+YS SARMHI Y+ L +
Sbjct: 104 ---VEHRFKVGRAVFLLLLMEIHVLRRVIESFYVFKYSTSARMHILAYVGALFYYVAAPL 160
Query: 172 --CENV 175
C N+
Sbjct: 161 SLCSNI 166
>sp|Q7XUH5|POED1_ORYSJ Polyprenol reductase 1 OS=Oryza sativa subsp. japonica
GN=Os04g0576800 PE=2 SV=2
Length = 354
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 116/183 (63%), Gaps = 17/183 (9%)
Query: 2 ESW--LAGLLRAAWVAGILPLIIASLPSSRLNSFH---GALLGFAKRGKIMQSSSHK--- 53
E W L LL AW+A LP+I+A+LP H L F+ RGK ++ S
Sbjct: 4 EGWPALQPLLCLAWIATTLPIIVAALPIPAAAGGHLLRRLLSAFSSRGKTVRPSPASSSG 63
Query: 54 -------FTVPQRFFCHFYVVAVVWTTLLLFTLWAYAY-KMAPSVSEPSLYSTIASHLTG 105
FTVPQ++F HFYVV V+ TT+LL +W YAY KM P + E S YSTIASHL G
Sbjct: 64 SSSSKAKFTVPQKYFMHFYVVGVLATTILLLAIWFYAYMKMTPLLPESSSYSTIASHLVG 123
Query: 106 GSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYL 165
S+ FSF + H + H++ VW +VFVLLLMEIQV+RRL ET + F YSPSARMHI GYL
Sbjct: 124 -SNSFSFGRVHSRTMGHKYHVWRTVFVLLLMEIQVLRRLYETEHVFHYSPSARMHIVGYL 182
Query: 166 TGL 168
TGL
Sbjct: 183 TGL 185
>sp|A2XWN6|POED1_ORYSI Polyprenol reductase 1 OS=Oryza sativa subsp. indica GN=OsI_17065
PE=3 SV=1
Length = 354
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 116/183 (63%), Gaps = 17/183 (9%)
Query: 2 ESW--LAGLLRAAWVAGILPLIIASLPSSRLNSFH---GALLGFAKRGKIMQSSSHK--- 53
E W L LL AW+A LP+I+A+LP H L F+ RGK ++ S
Sbjct: 4 EGWPALQPLLCLAWIATTLPIIVAALPIPAAAGGHLLRRLLSAFSSRGKTVRPSPASSSG 63
Query: 54 -------FTVPQRFFCHFYVVAVVWTTLLLFTLWAYAY-KMAPSVSEPSLYSTIASHLTG 105
FTVPQ++F HFYVV V+ TT+LL +W YAY KM P + E S YSTIASHL G
Sbjct: 64 SSSSKAKFTVPQKYFMHFYVVGVLATTILLLAIWFYAYMKMTPLLPESSSYSTIASHLVG 123
Query: 106 GSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYL 165
S+ FSF + H + H++ VW +VFVLLLMEIQV+RRL ET + F YSPSARMHI GYL
Sbjct: 124 -SNSFSFGRVHSRTMGHKYHVWRTVFVLLLMEIQVLRRLYETEHVFHYSPSARMHIVGYL 182
Query: 166 TGL 168
TGL
Sbjct: 183 TGL 185
>sp|B8B6G5|POED2_ORYSI Polyprenol reductase 2 OS=Oryza sativa subsp. indica GN=OsI_26070
PE=3 SV=2
Length = 353
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 112/183 (61%), Gaps = 18/183 (9%)
Query: 2 ESW--LAGLLRAAWVAGILPLIIASLPSSRLNSFH---GALLGFAKRGKIMQSSSHK--- 53
E W L LL AW+A LP+I A+LP H L F+ RGK ++ S
Sbjct: 4 EGWPALQPLLCFAWIAATLPIIAAALPIPTAVGGHLLRRLLSAFSSRGKTVRPSPASSSG 63
Query: 54 -------FTVPQRFFCHFYVVAVVWTTLLLFTLWAYAY-KMAPSVSEPSLYSTIASHLTG 105
FTVPQ++F HFYVV V+ TT+LL +W YAY K+ P + E S YSTI SHL G
Sbjct: 64 SSSSKAKFTVPQKYFMHFYVVGVLATTILLLAIWFYAYMKLTPLLLESSSYSTIFSHLVG 123
Query: 106 GSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYL 165
S+ FSF + + H++RVW +VF LLLME+QV+RRL ET + F YSP ARMHI GYL
Sbjct: 124 -SNSFSFGRVRSRTMGHKYRVWRTVFALLLMEVQVLRRLYETEHVFHYSP-ARMHIVGYL 181
Query: 166 TGL 168
TGL
Sbjct: 182 TGL 184
>sp|Q7F0Q2|POED2_ORYSJ Polyprenol reductase 2 OS=Oryza sativa subsp. japonica
GN=Os07g0493400 PE=2 SV=1
Length = 353
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 112/183 (61%), Gaps = 18/183 (9%)
Query: 2 ESW--LAGLLRAAWVAGILPLIIASLPSSRLNSFH---GALLGFAKRGKIMQSSSHK--- 53
E W L LL AW+A LP+I A+LP H L F+ RGK ++ S
Sbjct: 4 EGWPALQPLLCFAWIAATLPIIAAALPIPTAVGGHLLRRLLSAFSSRGKTVRPSPASSSG 63
Query: 54 -------FTVPQRFFCHFYVVAVVWTTLLLFTLWAYAY-KMAPSVSEPSLYSTIASHLTG 105
FTVPQ++F HFYVV V+ TT+LL +W YAY K+ P + E S YSTI SHL G
Sbjct: 64 SSSSKAKFTVPQKYFMHFYVVGVLATTILLLAIWFYAYMKLTPLLLESSSYSTIFSHLVG 123
Query: 106 GSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYL 165
S+ FSF + + H++RVW +VF LLLME+QV+RRL ET + F YSP ARMHI GYL
Sbjct: 124 -SNSFSFGRVRSRTMGHKYRVWRTVFALLLMEVQVLRRLYETEHVFHYSP-ARMHIVGYL 181
Query: 166 TGL 168
TGL
Sbjct: 182 TGL 184
>sp|Q5RJM1|PORED_RAT Polyprenol reductase OS=Rattus norvegicus GN=Srd5a3 PE=1 SV=2
Length = 330
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 42 KRGKIMQSSSHK------FTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSL 95
+ GK QS S + F VP+R+F HFYVV+V+W LL+ L + AP PS
Sbjct: 51 RYGKTKQSGSRRPAVCRAFDVPKRYFSHFYVVSVLWNGSLLWFLSQSLFLGAPF---PSW 107
Query: 96 YSTIASHLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSP 155
+ L +S + +Q + S+ VL+ + + +RRL E Y +S
Sbjct: 108 LWALLRTLGVTQFQALGMESKASRIQGKKLALSTFLVLVFLWVHSLRRLFECFYVSVFSN 167
Query: 156 SARMHIFGYLTGLLVH 171
+A +H+ Y GL+ +
Sbjct: 168 TA-IHVVQYCFGLVYY 182
>sp|Q9WUP4|PORED_MOUSE Polyprenol reductase OS=Mus musculus GN=Srd5a3 PE=2 SV=2
Length = 330
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 42 KRGKIMQSSSHK------FTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSL 95
+ GK QS S + F VP+R+F HFYV++VVW LL+ L + AP P+
Sbjct: 51 RYGKTKQSGSRRPAVCRAFDVPKRYFSHFYVISVVWNGSLLWLLSQSLFLGAPF---PNW 107
Query: 96 YSTIASHLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSP 155
S + L +S + + S+ VL+ + + +RRL E Y +S
Sbjct: 108 LSALLRTLGATQFQALEMESKASRMPAAELALSAFLVLVFLWVHSLRRLFECFYVSVFS- 166
Query: 156 SARMHIFGYLTGLL 169
+A +H+ Y GL+
Sbjct: 167 NAAIHVVQYCFGLV 180
>sp|C7T2J9|PORED_MESAU Polyprenol reductase OS=Mesocricetus auratus GN=Srd5a3 PE=2 SV=1
Length = 330
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 44 GKIMQSSSHKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVS-EPSLYSTIASH 102
G + F VP+R+F HFYVV+V+W LL+ L + AP + +L T+ S
Sbjct: 59 GPRRPAVCRAFDVPKRYFSHFYVVSVLWNGFLLWFLSRSLFLGAPFPNWLRALLRTLGST 118
Query: 103 LTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIF 162
M +S + + S+ VL+ + + VRRL E Y +S +A MH+
Sbjct: 119 QFRALEM----ESKASQMLVGELALSAFLVLVFLWVHSVRRLFECFYISVFS-NAVMHVV 173
Query: 163 GYLTGLLVH 171
Y GL+ +
Sbjct: 174 QYCFGLVYY 182
>sp|Q9H8P0|PORED_HUMAN Polyprenol reductase OS=Homo sapiens GN=SRD5A3 PE=1 SV=1
Length = 318
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 49 SSSHKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSLYSTIASHLTGGSH 108
++ F VP+R+F HFY+++V+W LL+ L + AP PS + L
Sbjct: 64 AACRAFDVPKRYFSHFYIISVLWNGFLLWCLTQSLFLGAPF---PSWLHGLLRILGAA-- 118
Query: 109 MFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGL 168
F L L S+ VL+ + + +RRL E +Y +S + +H+ Y GL
Sbjct: 119 --QFQGGELAL--------SAFLVLVFLWLHSLRRLFECLYVSVFS-NVMIHVVQYCFGL 167
Query: 169 L 169
+
Sbjct: 168 V 168
>sp|D2HBV9|PORED_AILME Polyprenol reductase OS=Ailuropoda melanoleuca GN=SRD5A3 PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 42 KRGKIMQSSSHKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSLYSTIAS 101
+ G+ + F VP+R+F HFY+++ +W F LW + V P+ +
Sbjct: 57 REGQSRPAVCRVFDVPKRYFSHFYIISALWNG---FLLWHLTQSVFLGVPFPNWLHGLL- 112
Query: 102 HLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHI 161
+ G S F L L S+ VL+ + + +RRL E Y +S + +HI
Sbjct: 113 RILGASQ---FQGGELAL--------SAFLVLVFLWLHSLRRLFECFYVSVFSNTV-IHI 160
Query: 162 FGYLTGLL 169
Y GL+
Sbjct: 161 VQYCFGLV 168
>sp|Q17428|PORED_CAEEL Polyprenol reductase OS=Caenorhabditis elegans GN=B0024.13 PE=3
SV=2
Length = 309
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 36 ALLGFAKRGKIMQSSS--HKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEP 93
AL + K + +S K +VP+++F HFY + ++ + L T+ + Y P+ P
Sbjct: 42 ALTTYGKAADQQEDNSLVEKISVPKKWFKHFYAIGLLTLFICLHTVHSLIYN--PNYLHP 99
Query: 94 SLYSTIASHLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQY 153
+ +A+ LT + S +S+ LLL+ + V RRL ETI+ Y
Sbjct: 100 VVLKILAT-LTRSYSIPPITPS------------TSILALLLISLHVARRLYETIFVSVY 146
Query: 154 SPSARMHIFGYLTGLL 169
S S RM++F Y G++
Sbjct: 147 SDS-RMNLFHYAVGIV 161
>sp|A8X8R3|PORED_CAEBR Polyprenol reductase OS=Caenorhabditis briggsae GN=CBG09584 PE=3
SV=1
Length = 309
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 28/141 (19%)
Query: 36 ALLGFAKRGKIMQSSS--HKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEP 93
AL + K ++ +S + +VP+++F HFY + ++ L L + + + P
Sbjct: 42 ALTTYGKAADQLEENSLVARISVPKKWFKHFYALGLLTLLLCLHCIHSL-------IHNP 94
Query: 94 SLYSTIASHLTGGSHMFSFHKSHLTLLQHRHRV-----WSSVFVLLLMEIQVVRRLIETI 148
TI LT+L + + ++V LLL+ V RRL ET+
Sbjct: 95 DFLPTIPIKF-------------LTILTRSYSIPPIAPSTAVLALLLITFHVARRLYETL 141
Query: 149 YTFQYSPSARMHIFGYLTGLL 169
+ YS S RM++F Y+ G++
Sbjct: 142 FVSVYSDS-RMNVFHYIVGIV 161
>sp|Q0P4J9|PORED_XENTR Polyprenol reductase OS=Xenopus tropicalis GN=srd5a3 PE=2 SV=1
Length = 308
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 28 SRLNSFHGALLGFAKRGKIMQSSS--HKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYK 85
S L S L+ + K +Q + F +P+R F HFY V+++W LL+ L
Sbjct: 32 SLLCSVFQDLIRYGKTKTGLQRPAWLQWFDIPKRCFWHFYCVSLIWNGCLLWIL---LRL 88
Query: 86 MAPSVSEPSLYSTIASHLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLI 145
+ SV P + L GS Q R S + L L+ + +RRL+
Sbjct: 89 LLQSVPVPEWLQLVLHFLHAGSEP-----------QILDRELSVILALALLWLHSLRRLL 137
Query: 146 ETIYTFQYSPSARMHIFGYLTGL 168
E ++ +S + +H+ Y GL
Sbjct: 138 ECLFVSVFS-NGVIHLVQYCFGL 159
>sp|P59418|MURC_BUCBP UDP-N-acetylmuramate--L-alanine ligase OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=murC PE=3 SV=1
Length = 486
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 26 PSSRLNSFHGALLGFAKRGKIMQSSSHKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYK 85
P+ L S H A G+ K+ +M H++T + F F L + ++A
Sbjct: 357 PTEILESIHTARFGWPKKKLLMIFQPHRYTRTKNFLFSFSKTLSNVDELFILEVYAANEA 416
Query: 86 MAPSVSEPSLYSTIASH 102
+ P SLY TI +
Sbjct: 417 IIPGADSTSLYKTIKKN 433
>sp|Q8AVI9|PORED_XENLA Polyprenol reductase OS=Xenopus laevis GN=srd5a3 PE=2 SV=1
Length = 319
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 4 WLAGLLRAAWVAGILPLIIASLPSSR--LNSFHGALLGFAKRGKIMQSSS--HKFTVPQR 59
WLA + AA++ +L + S R L S L+ + K ++ S F +P+R
Sbjct: 18 WLA--VDAAFLTALLLYLQRGCDSGRSLLCSVFQDLIRYGKTKSGLRRPSWLQWFDIPKR 75
Query: 60 FFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSLYSTIASHLTGGSHMFSFHKSHLTL 119
F HFY V++VW F LW + + SV P + L GS
Sbjct: 76 CFWHFYFVSLVWNG---FLLWILLHLLLQSVPVPEWLQAVLQFLCAGSEP---------- 122
Query: 120 LQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGL 168
Q S V L+ + +RRL+E ++ +S + +H Y GL
Sbjct: 123 -QVLGGELSVVLAFSLLWLHSLRRLLECLFVSIFS-NGVIHFVQYCFGL 169
>sp|Q5RIU9|PORED_DANRE Polyprenol reductase OS=Danio rerio GN=srd5a3 PE=2 SV=1
Length = 309
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 31 NSFHGALLGFAKRGKIMQSSSHK-----FTVPQRFFCHFYVVAVVWTT-LLLFTLWAYAY 84
N F + GK ++ F + +R+F HFYVV+V+W LLLF++
Sbjct: 34 NRVEHVFQDFIRYGKTKENIKRASWQLVFDLSKRYFYHFYVVSVMWNGLLLLFSI----R 89
Query: 85 KMAPSVSEPSLYSTIASHLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRL 144
+ S + P + LTG S ++++ HL+ L + +W + +RRL
Sbjct: 90 SVVMSEAFPDWIIDVLGSLTGRSRG-AWNEIHLSTLLLQVLLW----------VHTLRRL 138
Query: 145 IETIYTFQYSP---SARMHIFG----YLTGLLVHCEN 174
+E ++ +S + + FG + GL V C N
Sbjct: 139 LECLFVSVFSDGVINVVQYAFGLSYYIILGLTVLCTN 175
>sp|P20470|L_BUNYW RNA-directed RNA polymerase L OS=Bunyamwera virus GN=L PE=3 SV=1
Length = 2238
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 31 NSFHGALLGFAKRGKIMQSSSHKFTVPQRFFCHFYVVAVVWTTLLLF 77
NSFH A+L + M H FT+P+ FF + V WT LL F
Sbjct: 2141 NSFHIAMLL-----ESMDREFHMFTLPEAFFINVAGGVVNWTKLLKF 2182
>sp|Q8H252|RBR_COCNU Retinoblastoma-related protein OS=Cocos nucifera GN=Rb1 PE=2 SV=1
Length = 1011
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 56 VPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSLYSTIASHLTGGSHMFSFHKS 115
+ Q C FY VA + L F Y Y+ P +P ++ ++ H SH +
Sbjct: 784 IDQIILCSFYGVAKISQMALTFKEIIYNYRKQPQC-KPQVFRSVFVHWPSTSHNGKTGQE 842
Query: 116 HLTLLQHRHRVWSSVFVLLLMEI 138
H+ ++ + V+ LL+E+
Sbjct: 843 HVDIITFYNEVFIPSVKPLLVEL 865
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.140 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,745,245
Number of Sequences: 539616
Number of extensions: 3535536
Number of successful extensions: 9070
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9034
Number of HSP's gapped (non-prelim): 32
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 60 (27.7 bits)