Query 024684
Match_columns 264
No_of_seqs 141 out of 196
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03164 3-oxo-5-alpha-steroid 100.0 5.9E-44 1.3E-48 334.0 11.1 166 17-182 2-167 (323)
2 KOG1640 Predicted steroid redu 100.0 2.4E-30 5.2E-35 238.9 12.2 195 1-212 1-205 (304)
3 PLN02560 enoyl-CoA reductase 97.5 0.00017 3.6E-09 68.2 6.0 46 129-175 129-174 (308)
4 KOG1639 Steroid reductase requ 76.1 2 4.3E-05 40.7 2.4 33 130-163 122-154 (297)
5 PF11158 DUF2938: Protein of u 33.9 56 0.0012 28.3 3.8 38 160-207 63-100 (150)
6 PF10954 DUF2755: Protein of u 31.9 64 0.0014 26.3 3.5 33 168-204 24-56 (100)
7 PF15050 SCIMP: SCIMP protein 16.1 99 0.0022 26.5 1.8 38 9-48 5-42 (133)
8 PF10461 Peptidase_S68: Peptid 15.2 1.1E+02 0.0023 20.8 1.4 21 41-61 8-29 (35)
9 KOG1640 Predicted steroid redu 14.0 43 0.00094 32.3 -0.9 53 121-173 99-151 (304)
10 cd08760 Cyt_b561_FRRS1_like Eu 12.9 3.7E+02 0.0081 23.0 4.6 55 129-185 109-163 (191)
No 1
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=100.00 E-value=5.9e-44 Score=334.02 Aligned_cols=166 Identities=66% Similarity=1.070 Sum_probs=158.8
Q ss_pred HHHHHHhhcCCCcchhhHHhHHHHHhcCCCCCCCcceeeccCccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchhh
Q 024684 17 ILPLIIASLPSSRLNSFHGALLGFAKRGKIMQSSSHKFTVPQRFFCHFYVVAVVWTTLLLFTLWAYAYKMAPSVSEPSLY 96 (264)
Q Consensus 17 a~~iLl~~lp~~~l~~~~~l~~~l~~YGKt~~~s~~~~~VPKrWFtHFYIvsv~wn~flL~~l~~~a~~~~p~~~~~~~~ 96 (264)
+++++++++|.++++++++++.++.++||+.++++++|+||+|||+|||++|++||+++|..++.|+++|+|..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~rgk~~~~~~~~~tvpq~~f~hfy~~~~~~~t~ll~~~~~~~~~~~~~~~~~~~~ 81 (323)
T PLN03164 2 TLPIVIASLPSSKLNSFRGLVLGFARRGKILHSSSQKFTVPQRFFSHFYVVGVVWTTLLLAATWLYAYKMAPLSSEEFQY 81 (323)
T ss_pred ccceEEecCCchhhhhHHHHHHHHhhcCCcccccccccccchhhhhheeehHHHHHHHHHHHHHHHHHHhCcCCCccchh
Confidence 56788899999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhhhheeEeecCCCceehHHHHhhhhHHHhHhHH
Q 024684 97 STIASHLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGLLVHCENVR 176 (264)
Q Consensus 97 s~l~~~L~g~s~~~s~~~~~~~~~~~~~~~~~v~L~llLm~lQ~lRRLyEcl~Vs~fS~ssrMhi~hYl~Gl~fY~~~~~ 176 (264)
+++.+.++|+++.++.+++.+.+.|++||+|+++++++||++|++||||||++|+|||++||||++||++|++||+++++
T Consensus 82 s~~~~~~~g~~~~~~~~~~~~~~~~~~~~~w~~~~~l~L~~lq~lRRLyEslfVskfS~~SrMhl~hYlvGl~fY~~~~l 161 (323)
T PLN03164 82 SDIASQLAGGSHIFSFHKSRSTPVEHRYRVWRSVFLLLLMEIHVLRRLYESLYVFKYSPSARMHILGYLTGLFFYVAAPL 161 (323)
T ss_pred HHHHHHhcCCcceecccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHheeeEEecCCcceeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 024684 177 NRLMSM 182 (264)
Q Consensus 177 av~~~l 182 (264)
++++..
T Consensus 162 sl~~~~ 167 (323)
T PLN03164 162 SLCCNC 167 (323)
T ss_pred HHHhcc
Confidence 997654
No 2
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=99.97 E-value=2.4e-30 Score=238.86 Aligned_cols=195 Identities=27% Similarity=0.376 Sum_probs=144.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHH----hhcCCCcchhhHHhHHHHHhcCCCCC---CC---cceeeccCccchhHHHHHHH
Q 024684 1 MESWLAGLLRAAWVAGILPLII----ASLPSSRLNSFHGALLGFAKRGKIMQ---SS---SHKFTVPQRFFCHFYVVAVV 70 (264)
Q Consensus 1 ~e~~~~~lLr~~Wl~~a~~iLl----~~lp~~~l~~~~~l~~~l~~YGKt~~---~s---~~~~~VPKrWFtHFYIvsv~ 70 (264)
+|...++++|..|++-.+++++ +++|.+.+| +.++++++|||++. ++ .+++|||||||+|||++|+.
T Consensus 1 ~e~~~vn~~~~~~lt~~a~~~~~l~l~~~i~~~lp---s~~~~ll~YGk~~~~~~~~p~~~~kf~VPK~wF~HFY~i~vl 77 (304)
T KOG1640|consen 1 AELQLLNLLRALWLTVVAAYLLSLTLFVLICSLLP---SSLPWLLRYGKHDNFGEKSPLLVTKFTVPKRWFSHFYAIGVL 77 (304)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHhcccCCCCCCCHHHhHhhcCcHHHHHHHHHHHHH
Confidence 6899999999999998877666 777777775 67799999999986 22 38999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHhcCCCccccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhhhheeE
Q 024684 71 WTTLLLFTLWAYAYKMAPSVSEPSLYSTIASHLTGGSHMFSFHKSHLTLLQHRHRVWSSVFVLLLMEIQVVRRLIETIYT 150 (264)
Q Consensus 71 wn~flL~~l~~~a~~~~p~~~~~~~~s~l~~~L~g~s~~~s~~~~~~~~~~~~~~~~~v~L~llLm~lQ~lRRLyEcl~V 150 (264)
||.++++.++.+.++++ .|-+...+.++++... +..-+.. -.......+.+++...|+.||+||++++
T Consensus 78 w~~l~l~~~~~~~~~~~----~~~~~h~fl~~~~~~~--~~~~e~~------~~~~~~~~~~~l~~s~~~~rrlYet~fv 145 (304)
T KOG1640|consen 78 WNPLLLYFLLSTNFPIA----MPSVEHRFLVILGVFI--FKNIEED------LMYSLTLQVLLLIYSLHTLRRLYETLFV 145 (304)
T ss_pred HHHHHHHHHHHhhcCcC----chHHHHHHHHHHHHHH--HhchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986666332 3334555666666533 1111111 1112245677778899999999999999
Q ss_pred eecCCCceehHHHHhhhhHHHhHhHHHHhhhhhHHhhhhhccccchhhHHHHHhhhhheecc
Q 024684 151 FQYSPSARMHIFGYLTGLLVHCENVRNRLMSMLFLTEIGLKLFHAPTILLRLLYMLVCWWQV 212 (264)
Q Consensus 151 s~fS~ssrMhi~hYl~Gl~fY~~~~~av~~~l~~~t~~g~~~~~~~~~~~~~~~~~~~~w~~ 212 (264)
.+|+.+|||+.+||++|+++|...+++...+.+-.. +| +.+.+-.=..+.+++.+++|+.
T Consensus 146 ~~~~~~s~mnl~hy~vg~V~y~vl~~~l~~~~~g~~-~~-~~~~~l~~i~q~~g~~iF~i~s 205 (304)
T KOG1640|consen 146 LVYSVNSKMNLGHYLVGYVFYTVLSLALLLCTNGSS-EG-PNFNSLSSILQWLGLGIFAIGS 205 (304)
T ss_pred eeeeeccccchhhHHHHHHHHHHHHHHHHHhhcccc-cC-chhhhHHHHHHHHHHHHHHHHH
Confidence 999988999999999999999999999886665442 22 1111110013678888777764
No 3
>PLN02560 enoyl-CoA reductase
Probab=97.51 E-value=0.00017 Score=68.25 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhhhheeEeecCCCceehHHHHhhhhHHHhHhH
Q 024684 129 SVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGLLVHCENV 175 (264)
Q Consensus 129 v~L~llLm~lQ~lRRLyEcl~Vs~fS~ssrMhi~hYl~Gl~fY~~~~ 175 (264)
..+++.+..+|-+||.+||+||.+||+ ++|.+.+++.+.+||.+.+
T Consensus 129 ~~l~~~~~~~Hy~kR~~Et~fvhrfS~-~tmpl~n~~~n~~~Yw~~~ 174 (308)
T PLN02560 129 QTYAMYYWCFHYAKRILETFFVHRFSH-ATSPLFNVFRNCAYYWTFG 174 (308)
T ss_pred HHHHHHHHHHHHHHHhhheeeeEeecC-CCccHHHHHHHHHHHHHHH
Confidence 356667889999999999999999999 6699999999999997653
No 4
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=76.10 E-value=2 Score=40.68 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhheeEeecCCCceehHHH
Q 024684 130 VFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFG 163 (264)
Q Consensus 130 ~L~llLm~lQ~lRRLyEcl~Vs~fS~ssrMhi~h 163 (264)
-++..+...|=.+|++||+||-.||. ++|-+.-
T Consensus 122 ~iA~~~~~~Hy~KRl~ET~FvhrFs~-atmp~~n 154 (297)
T KOG1639|consen 122 RIAFFLWLFHYGKRLLETIFVHRFSL-ATMPIFN 154 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHH
Confidence 35666778999999999999999999 7796643
No 5
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=33.94 E-value=56 Score=28.25 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=26.7
Q ss_pred hHHHHhhhhHHHhHhHHHHhhhhhHHhhhhhccccchhhHHHHHhhhh
Q 024684 160 HIFGYLTGLLVHCENVRNRLMSMLFLTEIGLKLFHAPTILLRLLYMLV 207 (264)
Q Consensus 160 hi~hYl~Gl~fY~~~~~av~~~l~~~t~~g~~~~~~~~~~~~~~~~~~ 207 (264)
|+.||+.|+.|=..... -.|.+-+..||+..-+++.++
T Consensus 63 W~~HY~iGi~fa~~~~~----------l~g~~wl~~Pt~~~ali~G~~ 100 (150)
T PF11158_consen 63 WLAHYAIGIAFAVLYAL----------LWGPGWLSRPTLLPALIFGLV 100 (150)
T ss_pred HHHHHHHHHHHHHHHHH----------HHhhccccCCchHHHHHHHHH
Confidence 89999999987443321 245566788999987776554
No 6
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=31.89 E-value=64 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=25.0
Q ss_pred hHHHhHhHHHHhhhhhHHhhhhhccccchhhHHHHHh
Q 024684 168 LLVHCENVRNRLMSMLFLTEIGLKLFHAPTILLRLLY 204 (264)
Q Consensus 168 l~fY~~~~~av~~~l~~~t~~g~~~~~~~~~~~~~~~ 204 (264)
++|=+++-.+.|+|-+.++-.- |+|+.++||+-
T Consensus 24 iAYAlFVLfcfWaGaQlLn~Lv----HAPGV~EhLmQ 56 (100)
T PF10954_consen 24 IAYALFVLFCFWAGAQLLNMLV----HAPGVYEHLMQ 56 (100)
T ss_pred hHHHHHHHHHHHhhHHHHHHHH----hCcHHHHHHHH
Confidence 4555667788888888886555 99999998764
No 7
>PF15050 SCIMP: SCIMP protein
Probab=16.07 E-value=99 Score=26.48 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhhHHhHHHHHhcCCCCC
Q 024684 9 LRAAWVAGILPLIIASLPSSRLNSFHGALLGFAKRGKIMQ 48 (264)
Q Consensus 9 Lr~~Wl~~a~~iLl~~lp~~~l~~~~~l~~~l~~YGKt~~ 48 (264)
-.-||+.+|.+|++.++-.+.+ -+| +++..+|.||..+
T Consensus 5 r~nFWiiLAVaII~vS~~lglI-lyC-vcR~~lRqGkkwe 42 (133)
T PF15050_consen 5 RDNFWIILAVAIILVSVVLGLI-LYC-VCRWQLRQGKKWE 42 (133)
T ss_pred HhchHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHccccce
Confidence 4569999998887744433311 122 5688899999864
No 8
>PF10461 Peptidase_S68: Peptidase S68; InterPro: IPR019502 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains serine peptidases belonging to MEROPS peptidase family S68 (PIDD auto-processing protein, clan S-). These proteins are known as Pidd (short for p53-induced protein with a death domain) proteins. Pidd forms a complex with Raidd and procaspase-2 that is known as the 'Piddosome'. The Piddosome forms when DNA damage occurs and either activates NF-kappaB, leading to cell survival, or caspase-2, which leads to apoptosis.
Probab=15.16 E-value=1.1e+02 Score=20.83 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=12.2
Q ss_pred HhcCCCCCCCcceeeccC-ccc
Q 024684 41 AKRGKIMQSSSHKFTVPQ-RFF 61 (264)
Q Consensus 41 ~~YGKt~~~s~~~~~VPK-rWF 61 (264)
++.|..+.+..+..+||| +||
T Consensus 8 ~~~~~~~~s~~A~C~V~hFSWF 29 (35)
T PF10461_consen 8 LERGSKKRSHWACCSVPHFSWF 29 (35)
T ss_pred HhccCCccceeEEecccccEEE
Confidence 344443332256789999 666
No 9
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=14.02 E-value=43 Score=32.31 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=43.7
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhhhheeEeecCCCceehHHHHhhhhHHHhH
Q 024684 121 QHRHRVWSSVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGLLVHCE 173 (264)
Q Consensus 121 ~~~~~~~~v~L~llLm~lQ~lRRLyEcl~Vs~fS~ssrMhi~hYl~Gl~fY~~ 173 (264)
+++.++...+.....++++..||+-||+++.++|..++|++--++++..||..
T Consensus 99 ~h~fl~~~~~~~~~~~e~~~~~~~~~~~~~l~~s~~~~rrlYet~fv~~~~~~ 151 (304)
T KOG1640|consen 99 EHRFLVILGVFIFKNIEEDLMYSLTLQVLLLIYSLHTLRRLYETLFVLVYSVN 151 (304)
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeec
Confidence 45555556666666788999999999999999999999999999999988844
No 10
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=12.94 E-value=3.7e+02 Score=23.04 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhhhheeEeecCCCceehHHHHhhhhHHHhHhHHHHhhhhhHH
Q 024684 129 SVFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGLLVHCENVRNRLMSMLFL 185 (264)
Q Consensus 129 v~L~llLm~lQ~lRRLyEcl~Vs~fS~ssrMhi~hYl~Gl~fY~~~~~av~~~l~~~ 185 (264)
-+.+.+++.+|.+=-++=+..-.+ +....+..|..+|.+-|+...+++..|+...
T Consensus 109 Gl~~~~l~~lQ~~~G~~~~~~~~~--~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~ 163 (191)
T cd08760 109 GIIVLALAILQPLLGLLRPHPGSK--KRSIWNWAHRWLGRAALILAIVNIFLGLDLA 163 (191)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556777776654433322222 2355789999999999999999999888665
Done!