Query 024684
Match_columns 264
No_of_seqs 141 out of 196
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kf9_B MLCK2, myosin light cha 45.7 7.1 0.00024 23.0 0.9 12 59-70 3-14 (22)
2 4gnt_B Carbohydrate-responsive 7.2 1.7E+02 0.0059 17.5 1.2 10 225-234 9-18 (26)
3 3a04_A Tryptophanyl-tRNA synth 5.4 2.6E+02 0.0089 25.9 1.9 21 150-171 74-94 (372)
4 2cyc_A Tyrosyl-tRNA synthetase 5.2 3.9E+02 0.013 24.6 3.0 25 149-173 36-60 (375)
5 2j5b_A Tyrosyl-tRNA synthetase 5.1 4E+02 0.014 24.2 3.0 20 150-169 44-63 (348)
6 2ju0_B Phosphatidylinositol 4- 4.8 2E+02 0.0069 19.9 0.5 19 137-155 4-22 (52)
7 1vf5_A Cytochrome B6; photosyn 3.5 1.9E+03 0.066 18.7 8.3 110 53-181 23-135 (215)
8 2dlc_X Tyrosyl-tRNA synthetase 3.3 8.5E+02 0.029 22.4 3.7 26 149-174 42-67 (394)
9 2obs_A Capsid protein; P domai 3.2 2.4E+02 0.0083 26.3 -0.2 15 53-67 237-251 (327)
10 2zl7_A 58 KD capsid protein; n 3.1 2.5E+02 0.0084 25.9 -0.2 15 53-67 210-224 (295)
No 1
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=45.65 E-value=7.1 Score=23.03 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.8
Q ss_pred ccchhHHHHHHH
Q 024684 59 RFFCHFYVVAVV 70 (264)
Q Consensus 59 rWFtHFYIvsv~ 70 (264)
+|-+|||++..+
T Consensus 3 ~WkK~f~av~Aa 14 (22)
T 3kf9_B 3 RWKKNFIAVSAA 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 689999998654
No 2
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=7.24 E-value=1.7e+02 Score=17.51 Aligned_cols=10 Identities=40% Similarity=1.179 Sum_probs=7.8
Q ss_pred HHHHHHHHHh
Q 024684 225 LWWLTWYLQQ 234 (264)
Q Consensus 225 ~~~~~~~~~~ 234 (264)
--|-.||.|-
T Consensus 9 aiwrawyiqy 18 (26)
T 4gnt_B 9 AIWRAWYIQY 18 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4588999885
No 3
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=5.40 E-value=2.6e+02 Score=25.86 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=15.1
Q ss_pred EeecCCCceehHHHHhhhhHHH
Q 024684 150 TFQYSPSARMHIFGYLTGLLVH 171 (264)
Q Consensus 150 Vs~fS~ssrMhi~hYl~Gl~fY 171 (264)
.+-..++++||+.||+ |+..-
T Consensus 74 ~sG~~PTG~lHLGhyv-~~~~~ 94 (372)
T 3a04_A 74 LTGFMPSGKFHFGHKL-TVDQL 94 (372)
T ss_dssp EEEECCCSCCBHHHHH-HHHHH
T ss_pred EeCcCCCcHhHHHHHH-HHHHH
Confidence 4455666789999998 76543
No 4
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=5.18 E-value=3.9e+02 Score=24.60 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=17.2
Q ss_pred eEeecCCCceehHHHHhhhhHHHhH
Q 024684 149 YTFQYSPSARMHIFGYLTGLLVHCE 173 (264)
Q Consensus 149 ~Vs~fS~ssrMhi~hYl~Gl~fY~~ 173 (264)
..+-+.++++||+.||+.-+-.-.-
T Consensus 36 vy~G~~PTg~lHlG~yl~~l~~~~~ 60 (375)
T 2cyc_A 36 HYIGFEISGYIHLGTGLMAGAKIAD 60 (375)
T ss_dssp EEEEECCCSCCBHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCcCchHHHHHHHHHHH
Confidence 3445556678999999887655443
No 5
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=5.13 E-value=4e+02 Score=24.23 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=13.9
Q ss_pred EeecCCCceehHHHHhhhhH
Q 024684 150 TFQYSPSARMHIFGYLTGLL 169 (264)
Q Consensus 150 Vs~fS~ssrMhi~hYl~Gl~ 169 (264)
.+-+.++.+||+.||+.-+-
T Consensus 44 y~G~~PTg~lHlGhyl~~l~ 63 (348)
T 2j5b_A 44 YNGFEPSGRIHIAQALITVM 63 (348)
T ss_dssp EEEECCCSSCBHHHHHHHHH
T ss_pred EeccCCCCCCchhHHHHHHH
Confidence 44555566899999877543
No 6
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=4.76 E-value=2e+02 Score=19.93 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=13.9
Q ss_pred HHHHHHhhhhheeEeecCC
Q 024684 137 EIQVVRRLIETIYTFQYSP 155 (264)
Q Consensus 137 ~lQ~lRRLyEcl~Vs~fS~ 155 (264)
..|.+||+|--+=.-.|+.
T Consensus 4 ~Fqv~Rr~~NklQ~ilFn~ 22 (52)
T 2ju0_B 4 GFQVARRVLNNLQTNLFNT 22 (52)
T ss_dssp TTHHHHHHHHHHTCCSSCS
T ss_pred hhHHHHHHHHHHHHHHhCC
Confidence 3689999998766665543
No 7
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=3.47 E-value=1.9e+03 Score=18.67 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=61.8
Q ss_pred eeeccCccchhHHHHHHHHHHHHHHHHH--HHHh-hcCCCCCCchhhHHHHHHhcCCCccccccccchhhhhhhchhhHH
Q 024684 53 KFTVPQRFFCHFYVVAVVWTTLLLFTLW--AYAY-KMAPSVSEPSLYSTIASHLTGGSHMFSFHKSHLTLLQHRHRVWSS 129 (264)
Q Consensus 53 ~~~VPKrWFtHFYIvsv~wn~flL~~l~--~~a~-~~~p~~~~~~~~s~l~~~L~g~s~~~s~~~~~~~~~~~~~~~~~v 129 (264)
+..+|+++ +-+|-+|.+....+..|++ .... .-+|....+| +++.....+.+- ..... .-+.+.+
T Consensus 23 ~~p~P~ni-s~~w~fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af--~Sv~~I~~dv~~-----GwliR----~~H~~gA 90 (215)
T 1vf5_A 23 SKYVPPHV-NIFYCLGGITLTCFLIQFATGFAMTFYYKPTVTEAY--ASVQYIMNEVSF-----GWLIR----SIHRWSA 90 (215)
T ss_dssp CSCCCCSS-CSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHH--HHHHHHHTTSTT-----HHHHH----HHHHHHH
T ss_pred cCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhHhcCChhHHH--HHHHHHHhhccc-----chhhc----cchHHHH
Confidence 34578864 5667778887777777766 2222 3355555555 334333332110 11111 1124456
Q ss_pred HHHHHHHHHHHHHhhhhheeEeecCCCceehHHHHhhhhHHHhHhHHHHhhh
Q 024684 130 VFVLLLMEIQVVRRLIETIYTFQYSPSARMHIFGYLTGLLVHCENVRNRLMS 181 (264)
Q Consensus 130 ~L~llLm~lQ~lRRLyEcl~Vs~fS~ssrMhi~hYl~Gl~fY~~~~~av~~~ 181 (264)
-+..+++-+|..|-+|-.-|-.+ + -.-|..|..-++.+...-+.|
T Consensus 91 s~ffi~~ylHi~Rglyygsy~~p--~-----~~~W~~Gv~l~~l~m~~aF~G 135 (215)
T 1vf5_A 91 SMMVLMMILHVFRVYLTGGFKKP--R-----ELTWISGVILAVITVSFGVTG 135 (215)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSS--C-----SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccC--C-----CceeHhHHHHHHHHHHHHHcc
Confidence 66777899999999987765321 2 123677888777765544433
No 8
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=3.28 E-value=8.5e+02 Score=22.37 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=17.6
Q ss_pred eEeecCCCceehHHHHhhhhHHHhHh
Q 024684 149 YTFQYSPSARMHIFGYLTGLLVHCEN 174 (264)
Q Consensus 149 ~Vs~fS~ssrMhi~hYl~Gl~fY~~~ 174 (264)
..+-|.++.+||+.||+--+..+...
T Consensus 42 vy~G~~PTG~LHlG~~~~al~~~~~~ 67 (394)
T 2dlc_X 42 LYWGTAPTGRPHCGYFVPMTKLADFL 67 (394)
T ss_dssp EEEEECCCSCCBGGGHHHHHHHHHHH
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHH
Confidence 34567777899999986555444443
No 9
>2obs_A Capsid protein; P domain, norovirus VA387, blood group trisaccharides type A, viral protein; HET: FUC GL0 A2G; 2.00A {Norovirus} PDB: 2obr_A* 2obt_A* 3bqj_A 3sjp_A 3sej_A 3skb_A 3sld_A* 3sln_A*
Probab=3.19 E-value=2.4e+02 Score=26.32 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=12.8
Q ss_pred eeeccCccchhHHHH
Q 024684 53 KFTVPQRFFCHFYVV 67 (264)
Q Consensus 53 ~~~VPKrWFtHFYIv 67 (264)
..-+|+-|..|||--
T Consensus 237 ~CLLPqE~v~HF~~e 251 (327)
T 2obs_A 237 DCLLPQEWVQHFYQE 251 (327)
T ss_dssp EESSCHHHHHHHHHH
T ss_pred cCcCCHHHHHhhhcc
Confidence 567999999999964
No 10
>2zl7_A 58 KD capsid protein; norovirus, HBGA, histo-blood group antigen, carbohydrate, VP1, P-domain, viral protein; HET: FUC GAL NGA; 1.35A {Norwalk virus} PDB: 2zl6_A* 3by1_A 3by2_A 2zl5_A 3by3_A* 3d26_A*
Probab=3.15 E-value=2.5e+02 Score=25.92 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=12.4
Q ss_pred eeeccCccchhHHHH
Q 024684 53 KFTVPQRFFCHFYVV 67 (264)
Q Consensus 53 ~~~VPKrWFtHFYIv 67 (264)
..-+|+-|.+|||--
T Consensus 210 ~CLLPqE~V~HF~~e 224 (295)
T 2zl7_A 210 PCLLPQEYISHLASE 224 (295)
T ss_dssp EESSCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHhc
Confidence 456899999999974
Done!