Query 024684
Match_columns 264
No_of_seqs 141 out of 196
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 12:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024684.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024684hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2atza1 d.264.1.3 (A:3-178) Hy 9.7 49 0.0036 26.2 1.3 33 229-261 84-116 (176)
2 d1iq0a3 d.67.2.1 (A:1-96) Argi 6.6 89 0.0065 21.3 1.4 13 236-249 72-84 (96)
3 d1i6la_ c.26.1.1 (A:) Tryptoph 5.6 1.1E+02 0.008 25.1 1.7 16 150-165 5-20 (326)
4 d1vmba_ d.58.14.1 (A:) Ribosom 5.0 70 0.0051 22.5 -0.0 12 143-154 3-14 (107)
5 d1vlya2 d.250.1.1 (A:3-243) Hy 4.5 74 0.0054 23.9 -0.2 8 216-223 220-228 (241)
6 d1j1ua_ c.26.1.1 (A:) Tyrosyl- 4.3 1.7E+02 0.013 23.6 2.1 19 151-170 33-51 (306)
7 d2okua1 a.48.5.1 (A:443-564) U 4.3 1.1E+02 0.0082 22.8 0.7 9 140-148 64-72 (122)
8 d1wlfa2 b.52.2.3 (A:13-99) Per 4.0 47 0.0034 23.7 -1.6 11 215-225 9-19 (87)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 3.9 1.9E+02 0.014 17.3 1.4 15 227-241 19-33 (37)
10 d1oyia_ a.4.5.19 (A:) dsRNA-bi 3.8 95 0.0069 20.2 -0.1 10 53-62 51-60 (62)
No 1
>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184 {Helicobacter pylori [TaxId: 210]}
Probab=9.68 E-value=49 Score=26.23 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHhhhhccceEEEeEeeeecceeeeeeeec
Q 024684 229 TWYLQQQKLRGGIFVNLTITQVTDMQLFHMYIS 261 (264)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (264)
-|+..|+-||.--|.|.|+-|-..-.-.|.||-
T Consensus 84 F~hraqlllReegfinftaY~tKtpghLhlyIh 116 (176)
T d2atza1 84 FYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVH 116 (176)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECSSTTCEEEEEC
T ss_pred HHHHHHHHHHHhccceeeeeccCCCCeEEEEEE
Confidence 378899999999999999999888888888873
No 2
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}
Probab=6.58 E-value=89 Score=21.34 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=9.2
Q ss_pred hhccceEEEeEeee
Q 024684 236 KLRGGIFVNLTITQ 249 (264)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (264)
...|| |+|+++..
T Consensus 72 ~~~gp-FiNf~l~~ 84 (96)
T d1iq0a3 72 VPVGG-YLNFRLRT 84 (96)
T ss_dssp EEETT-EEEEEECH
T ss_pred EeeCC-eEEEEECH
Confidence 45677 88888753
No 3
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.62 E-value=1.1e+02 Score=25.08 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.2
Q ss_pred EeecCCCceehHHHHh
Q 024684 150 TFQYSPSARMHIFGYL 165 (264)
Q Consensus 150 Vs~fS~ssrMhi~hYl 165 (264)
+|-+.++.+||+.||+
T Consensus 5 ~tG~~PSG~~HlG~~~ 20 (326)
T d1i6la_ 5 FSGIQPSGVITIGNYI 20 (326)
T ss_dssp EEEECCCSCCBHHHHH
T ss_pred EeCcCCCCccHHHHHH
Confidence 3555667889999986
No 4
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]}
Probab=4.95 E-value=70 Score=22.47 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=10.1
Q ss_pred hhhhheeEeecC
Q 024684 143 RLIETIYTFQYS 154 (264)
Q Consensus 143 RLyEcl~Vs~fS 154 (264)
|+||+.++..+.
T Consensus 3 R~YE~~~Il~p~ 14 (107)
T d1vmba_ 3 RIYESMFIIAPN 14 (107)
T ss_dssp EEEEEEEEECTT
T ss_pred ceeEEEEEECCC
Confidence 889999998874
No 5
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.50 E-value=74 Score=23.86 Aligned_cols=8 Identities=50% Similarity=1.057 Sum_probs=6.4
Q ss_pred ec-cchhhH
Q 024684 216 IS-PYGCFL 223 (264)
Q Consensus 216 ~~-~~~~~~ 223 (264)
|| +||||.
T Consensus 220 Vsf~KGCY~ 228 (241)
T d1vlya2 220 ISFKKGCYT 228 (241)
T ss_dssp CCSSSCCCT
T ss_pred CCCCCCCcC
Confidence 67 899985
No 6
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.30 E-value=1.7e+02 Score=23.60 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=14.1
Q ss_pred eecCCCceehHHHHhhhhHH
Q 024684 151 FQYSPSARMHIFGYLTGLLV 170 (264)
Q Consensus 151 s~fS~ssrMhi~hYl~Gl~f 170 (264)
+-+.++++||+.||+ ++..
T Consensus 33 ~G~~PTG~lHlGh~v-~~~~ 51 (306)
T d1j1ua_ 33 IGFEPSGKIHLGHYL-QIKK 51 (306)
T ss_dssp EEECCCSSCBHHHHH-HHHH
T ss_pred EeECCCCcchHHHHH-HHHH
Confidence 455667889999997 5544
No 7
>d2okua1 a.48.5.1 (A:443-564) Uncharacterized protein PG0775 {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.30 E-value=1.1e+02 Score=22.83 Aligned_cols=9 Identities=44% Similarity=0.649 Sum_probs=7.3
Q ss_pred HHHhhhhhe
Q 024684 140 VVRRLIETI 148 (264)
Q Consensus 140 ~lRRLyEcl 148 (264)
..|||+|+.
T Consensus 64 ~ARRLvEma 72 (122)
T d2okua1 64 QARRLVEMT 72 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 369999984
No 8
>d1wlfa2 b.52.2.3 (A:13-99) Peroxisome biogenesis factor 1 (PEX-1), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.02 E-value=47 Score=23.70 Aligned_cols=11 Identities=45% Similarity=1.011 Sum_probs=8.7
Q ss_pred eeccchhhHHH
Q 024684 215 LISPYGCFLHL 225 (264)
Q Consensus 215 ~~~~~~~~~~~ 225 (264)
+-+.|.|||||
T Consensus 9 f~~~kdcFL~l 19 (87)
T d1wlfa2 9 FTNARDCFLHL 19 (87)
T ss_dssp EECCSSSCEEE
T ss_pred ecCCcceEEEC
Confidence 44678999997
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=3.92 E-value=1.9e+02 Score=17.30 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhccce
Q 024684 227 WLTWYLQQQKLRGGI 241 (264)
Q Consensus 227 ~~~~~~~~~~~~~~~ 241 (264)
=|..|||....|.|-
T Consensus 19 gLi~YL~rE~~REGy 33 (37)
T d1eysh2 19 GLIIYLRREDKREGY 33 (37)
T ss_dssp HHHHHHHHHTTSSSC
T ss_pred HHHHHHHhcccccCC
Confidence 367889988888773
No 10
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=3.80 E-value=95 Score=20.23 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=7.8
Q ss_pred eeeccCccch
Q 024684 53 KFTVPQRFFC 62 (264)
Q Consensus 53 ~~~VPKrWFt 62 (264)
.=++|.|||.
T Consensus 51 s~d~pprw~~ 60 (62)
T d1oyia_ 51 SDDIPPRWFM 60 (62)
T ss_dssp CSSSSCEEES
T ss_pred CCCCCCcccc
Confidence 3469999995
Done!