BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024686
MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMT
LFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS
MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKC
RYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDDPVS
TQPCFTDICSNANPSSPVCPKLQA

High Scoring Gene Products

Symbol, full name Information P value
AT1G64680 protein from Arabidopsis thaliana 1.1e-94
D27
AT1G03055
protein from Arabidopsis thaliana 3.1e-35
AT4G01995 protein from Arabidopsis thaliana 2.8e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024686
        (264 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010856 - symbol:AT1G64680 "AT1G64680" species...   942  1.1e-94   1
TAIR|locus:505006097 - symbol:D27 "AT1G03055" species:370...   381  3.1e-35   1
TAIR|locus:504955232 - symbol:AT4G01995 "AT4G01995" speci...   306  2.8e-27   1


>TAIR|locus:2010856 [details] [associations]
            symbol:AT1G64680 "AT1G64680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0016556 "mRNA modification" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009941 EMBL:AC009519
            GO:GO:0009534 HOGENOM:HOG000242549 InterPro:IPR025114 Pfam:PF13225
            EMBL:BT010194 EMBL:AK226297 IPI:IPI00535028 PIR:H96669
            RefSeq:NP_564838.1 UniGene:At.28247 STRING:Q9SGU7 PaxDb:Q9SGU7
            PRIDE:Q9SGU7 EnsemblPlants:AT1G64680.1 GeneID:842776
            KEGG:ath:AT1G64680 TAIR:At1g64680 eggNOG:NOG29740 InParanoid:Q9SGU7
            OMA:FMGLFAR PhylomeDB:Q9SGU7 ProtClustDB:CLSN2917382
            Genevestigator:Q9SGU7 Uniprot:Q9SGU7
        Length = 250

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 174/247 (70%), Positives = 199/247 (80%)

Query:    18 ISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKT 77
             ++ RR+ST    RCGIAEPSGEPAP+G KT+Y DG  E+ FM LFARKM+KF S  K K 
Sbjct:    12 LTFRRRST----RCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGS--KKKK 65

Query:    78 ETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXXXXXXXXXXXXMLPPGAPAQFRKLFPPT 137
             +TK+K +++  YDYESFV+VSKRVM+G                MLPPGAP QFRKLFPPT
Sbjct:    66 DTKEKGFWE--YDYESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLFPPT 123

Query:   138 KWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCRYLENSGCVGMCVNMCK 197
             KWAAEFNAALTVPFFHWLVGPS+V+EVE+NG KQRSGV IKKCRYLENSGCVGMCVNMCK
Sbjct:   124 KWAAEFNAALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKCRYLENSGCVGMCVNMCK 183

Query:   198 FPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDDPVSTQPCFTDICSNANPSSP 257
              PTQDFFT EFGLPLTM PN+EDMSCEM+YGQ PP+FE+D  + QPC  DICS +NPSSP
Sbjct:   184 IPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPCLADICSMSNPSSP 243

Query:   258 VCPKLQA 264
             +CPKL+A
Sbjct:   244 ICPKLEA 250


>TAIR|locus:505006097 [details] [associations]
            symbol:D27 "AT1G03055" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009536 "plastid" evidence=IDA]
            [GO:0010223 "secondary shoot formation" evidence=IMP] [GO:1901601
            "strigolactone biosynthetic process" evidence=IGI] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009536 GO:GO:0010223
            UniGene:At.42563 UniGene:At.51465 EMBL:BT010155 IPI:IPI00528297
            RefSeq:NP_563673.1 EnsemblPlants:AT1G03055.1 GeneID:838334
            KEGG:ath:AT1G03055 TAIR:At1g03055 eggNOG:NOG327291
            HOGENOM:HOG000242549 InParanoid:Q7XA78 OMA:SNCVGMC PhylomeDB:Q7XA78
            ProtClustDB:CLSN2687636 Genevestigator:Q7XA78 GO:GO:1901601
            InterPro:IPR025114 Pfam:PF13225 Uniprot:Q7XA78
        Length = 264

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 76/201 (37%), Positives = 107/201 (53%)

Query:    51 DGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGXXXXXX 110
             D FF K  +   ++ ++  A  + S   T          DY+  VD + RV         
Sbjct:    67 DSFFSKIAINYLSKNLQDAAGISSSSKST----------DYDRLVDTATRVSRNFDTKQQ 116

Query:   111 XXXXXXXXXXMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEK 170
                        LP    +  +  FPP+K + E  A  T   F WLVGPSEV E E+NG K
Sbjct:   117 HEFVLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVNGRK 176

Query:   171 QRSGVHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQV 230
             ++S V+I+KCR+LE S CVGMC ++CK P+Q F     G+P+ M P+F D+SC+M++G+ 
Sbjct:   177 EKSVVYIEKCRFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGRE 236

Query:   231 PPSFEDDPVSTQPCFTDICSN 251
             PP  EDDP   QPCF + C +
Sbjct:   237 PPEIEDDPAMKQPCF-EFCKS 256


>TAIR|locus:504955232 [details] [associations]
            symbol:AT4G01995 "AT4G01995" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 GenomeReviews:CT486007_GR
            UniGene:At.43223 InterPro:IPR025114 Pfam:PF13225 EMBL:AY062663
            EMBL:AY093324 IPI:IPI00517905 RefSeq:NP_680560.1 UniGene:At.27269
            PRIDE:Q8W4C4 EnsemblPlants:AT4G01995.1 GeneID:828173
            KEGG:ath:AT4G01995 TAIR:At4g01995 eggNOG:NOG298641
            HOGENOM:HOG000012571 InParanoid:Q8W4C4 OMA:CKLPTQT PhylomeDB:Q8W4C4
            ProtClustDB:CLSN2690274 Genevestigator:Q8W4C4 Uniprot:Q8W4C4
        Length = 258

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 93/275 (33%), Positives = 132/275 (48%)

Query:     1 MVVLSLQVVRFPTPPYQISLRRQSTDKIT-----RCGIAEPSGEPAPLGQ-KTKYNDGFF 54
             M VL +QV+  P PP  I      + K+      RC I+  S   +  G  K +Y  G  
Sbjct:     1 MAVL-IQVL-LP-PPTTIVFSNSFSTKLILTRRLRCRISNSSEVKSDEGAPKLEYKPGPL 57

Query:    55 EKAFMTLFARKM-EKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVM-EGXXXXXXXX 112
             +  FM  F  K+ E+  S      +++K         Y   +++ K ++ +G        
Sbjct:    58 DDFFMQSFRNKLVEEVGS------DSEKP-------GYVGLIELVKLLLLKGRTRSETSD 104

Query:   113 XXXXXXXXMLPPGAPAQFRKLFPPT---KWAAEFNAALTVPFFHWLVGPSEVVEVEI-NG 168
                     + PP     ++ L  P    K AA   A +TV    WL+GPS+V  +++ NG
Sbjct:   105 AAVRILKSLFPPLILELYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNG 164

Query:   169 EKQRSGVHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYG 228
             E   SGV ++KC+YLE S CVG+C+N CK PTQ FF    G+PL M PNF+D SC+  +G
Sbjct:   165 ESWDSGVFVEKCQYLEESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFG 224

Query:   229 QVPPSFEDDPVSTQPCFTDICSNANP---SSPVCP 260
               PP  EDD    +PCF + CS A      S  CP
Sbjct:   225 VAPP--EDDGNVNEPCF-ETCSIAGRRKLKSGECP 256


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       248   0.00079  114 3  11 22  0.42    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  208 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.31u 0.14s 20.45t   Elapsed:  00:00:01
  Total cpu time:  20.31u 0.14s 20.45t   Elapsed:  00:00:01
  Start:  Fri May 10 19:24:53 2013   End:  Fri May 10 19:24:54 2013

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