Query 024686
Match_columns 264
No_of_seqs 94 out of 96
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e07_A Protein spaetzle; cysti 38.2 12 0.0004 30.1 1.4 44 167-217 34-83 (114)
2 2hm3_A Nematocyst outer WALL a 37.1 12 0.0004 23.8 1.0 12 186-197 10-21 (31)
3 2nx7_A Nematocyst outer WALL a 27.4 15 0.0005 22.9 0.2 16 183-198 7-22 (28)
4 2lyy_A Uncharacterized protein 22.0 90 0.0031 24.3 3.9 40 91-152 11-52 (96)
5 3v53_A RNA-binding protein 25; 20.6 1E+02 0.0034 24.9 4.0 70 48-134 37-107 (119)
6 4ec7_A VNGF, venom nerve growt 15.9 1E+02 0.0034 24.6 3.0 29 163-191 39-69 (116)
7 2auv_A Potential NAD-reducing 12.9 58 0.002 23.3 0.7 12 183-194 48-59 (85)
8 2ljs_A Trypsin inhibitor 3; be 12.3 59 0.002 20.6 0.5 16 177-194 8-23 (30)
9 1zoq_C CREB-binding protein, i 12.0 1.7E+02 0.0059 20.3 2.8 15 106-121 15-29 (47)
10 1f3k_A Omega-conotoxin txvii; 11.6 74 0.0025 19.6 0.8 19 178-196 6-24 (26)
No 1
>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial, cytokine, developm protein, fungicide, glycoprotein, secreted; 2.40A {Drosophila melanogaster}
Probab=38.23 E-value=12 Score=30.11 Aligned_cols=44 Identities=16% Similarity=0.449 Sum_probs=28.0
Q ss_pred cCeeeeccEEEceeceeeccccccccc------ccccCcccchhhhccCCceeeccC
Q 024686 167 NGEKQRSGVHIKKCRYLENSGCVGMCV------NMCKFPTQDFFTREFGLPLTMIPN 217 (264)
Q Consensus 167 ~G~~~~sgV~IeKCRyLEeSgC~GmCv------N~CKiPTQ~FF~d~~GlpLtM~PN 217 (264)
|...-.++|+||+|++ +.+-|...|- -.|| |+|-...| |...||
T Consensus 34 N~~~y~Q~vriE~C~~-~g~~C~~~~~~p~~Y~s~C~---QkY~~~rL---la~d~~ 83 (114)
T 3e07_A 34 NNDEYKQAIQIEECEG-ADQPCDFAANFPQSYNPICK---QHYTQQTL---ASIKSD 83 (114)
T ss_dssp --CCCEEEEEEEEESS-TTSBCTTGGGSCTTSEEEEE---EEEEECEE---EEECTT
T ss_pred eCCCcEEEEEEEEeCC-CCCccccccccCCCCCCeEe---EEecEEEE---EEECCC
Confidence 3344578999999999 5666776662 2444 77766655 444554
No 2
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=37.08 E-value=12 Score=23.81 Aligned_cols=12 Identities=58% Similarity=1.251 Sum_probs=11.4
Q ss_pred cccccccccccc
Q 024686 186 SGCVGMCVNMCK 197 (264)
Q Consensus 186 SgC~GmCvN~CK 197 (264)
|||.|-|-.-||
T Consensus 10 sgcsgdcypeck 21 (31)
T 2hm3_A 10 SGCSGDCYPECK 21 (31)
T ss_dssp TTCCGGGTTTTC
T ss_pred CCcCccccCccC
Confidence 899999999998
No 3
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=27.36 E-value=15 Score=22.90 Aligned_cols=16 Identities=31% Similarity=1.036 Sum_probs=14.1
Q ss_pred eecccccccccccccC
Q 024686 183 LENSGCVGMCVNMCKF 198 (264)
Q Consensus 183 LEeSgC~GmCvN~CKi 198 (264)
|++.||.+-|..-|.+
T Consensus 7 lqqpgcssacapacrl 22 (28)
T 2nx7_A 7 LQQPGCSSACAPACRL 22 (28)
T ss_dssp HHSTTCCGGGTTTCCH
T ss_pred ccCCCccccccchhhe
Confidence 7789999999999876
No 4
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=22.02 E-value=90 Score=24.32 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCCChHHHHHhhcCCchhHHHHHhhhhhhhh
Q 024686 91 YESFVDVSKRVMEGRS--RQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFF 152 (264)
Q Consensus 91 YdglVe~a~~lm~grs--~~~q~~~v~~vL~sl~Pp~~~~~fr~lfpp~~~~~e~nA~~T~~~f 152 (264)
=|.||++|+....+.. +-+-..+. |+ =++++|||++...|
T Consensus 11 AD~fI~lAN~q~~~~e~~~g~Vsas~------------------ly----AaARfnAfv~a~~~ 52 (96)
T 2lyy_A 11 ATELIKLANQQNQNTEIQTGEVSASF------------------MW----ALARYNAWFGSTSF 52 (96)
T ss_dssp HHHHHHHHHHHHTSTTSCHHHHHHHH------------------HH----HHHHHSGGGGGGTC
T ss_pred HHHHHHHHHHhhcccCcccchHHHHH------------------HH----HHHHHHHHHHHHhc
Confidence 4789999998876543 22332222 22 26888999887654
No 5
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=20.59 E-value=1e+02 Score=24.94 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=51.1
Q ss_pred cccCcHHHHHHHHHHHHHHHHHcCCCCCchhhhhcccccCCCChhHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCCCh
Q 024686 48 KYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRV-MEGRSRQQQQEVVREVLLSMLPPGA 126 (264)
Q Consensus 48 ~Y~ds~lD~~~l~lF~~km~~~~G~~~~~~~~~k~~~~~~~~gYdglVe~a~~l-m~grs~~~q~~~v~~vL~sl~Pp~~ 126 (264)
.|+++.+|+-+--+-.+|+.+.+|.. =|.|||..-.. ....+|.+-++-+..+|..=-..++
T Consensus 37 ~vd~~~i~~~lkPWI~kKI~E~LG~e-----------------Ed~LVdfI~~~L~~~~~pk~l~~~L~~~LDeeA~~FV 99 (119)
T 3v53_A 37 IVDSILMERRIRPWINKKIIEYIGEE-----------------EATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFI 99 (119)
T ss_dssp TSCHHHHHHTHHHHHHHHHHHHTC--------------------CHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCc-----------------hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHH
Confidence 56678888889999999999999952 14578876665 4567888888888888887655555
Q ss_pred HHHHHhhc
Q 024686 127 PAQFRKLF 134 (264)
Q Consensus 127 ~~~fr~lf 134 (264)
-.++|.|+
T Consensus 100 ~kLWrlLI 107 (119)
T 3v53_A 100 VKMWRLLI 107 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 6
>4ec7_A VNGF, venom nerve growth factor; cobra NGF, unknown lipid, hormone; HET: L44; 2.60A {Naja atra}
Probab=15.90 E-value=1e+02 Score=24.64 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=21.1
Q ss_pred EEeecCeeeeccEEEceece--eeccccccc
Q 024686 163 EVEINGEKQRSGVHIKKCRY--LENSGCVGM 191 (264)
Q Consensus 163 ~vev~G~~~~sgV~IeKCRy--LEeSgC~Gm 191 (264)
++..|+...++=.++.|||. -..+||-|+
T Consensus 39 ~v~~~~~~~kQyF~et~C~~~~~~~~~Crgi 69 (116)
T 4ec7_A 39 NVNLDNKVYKEYFFETKCKNPNPEPSGCRGI 69 (116)
T ss_dssp EEEETTEEEECCEEEEEESCSCSBTTBSTTB
T ss_pred EEecCCceEEEEEEEEEeCCCCCCCCCCcce
Confidence 34456666678889999985 356889885
No 7
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=12.89 E-value=58 Score=23.31 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=10.1
Q ss_pred eecccccccccc
Q 024686 183 LENSGCVGMCVN 194 (264)
Q Consensus 183 LEeSgC~GmCvN 194 (264)
|++++|.|.|-+
T Consensus 48 l~~~~ClG~C~~ 59 (85)
T 2auv_A 48 IDTLRCVGGCAL 59 (85)
T ss_dssp CBSSSSSSSCTT
T ss_pred EEECCccCcCCC
Confidence 677999999964
No 8
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=12.33 E-value=59 Score=20.61 Aligned_cols=16 Identities=50% Similarity=1.194 Sum_probs=12.7
Q ss_pred Eceeceeecccccccccc
Q 024686 177 IKKCRYLENSGCVGMCVN 194 (264)
Q Consensus 177 IeKCRyLEeSgC~GmCvN 194 (264)
++||| ..|.|.|-|+-
T Consensus 8 lkkck--rdsdcpgecic 23 (30)
T 2ljs_A 8 LKKCR--RDSDCPGECIC 23 (30)
T ss_dssp CCBCS--SGGGSSTTCCB
T ss_pred HHHhc--cccCCchhhee
Confidence 57787 57999999973
No 9
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=12.05 E-value=1.7e+02 Score=20.30 Aligned_cols=15 Identities=53% Similarity=0.395 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHhc
Q 024686 106 SRQQQQEVVREVLLSM 121 (264)
Q Consensus 106 s~~~q~~~v~~vL~sl 121 (264)
|+++|| -|..||+|=
T Consensus 15 sp~qqq-qvl~ILksn 29 (47)
T 1zoq_C 15 SPQQQQ-QVLNILKSN 29 (47)
T ss_dssp CHHHHH-HHHHHHHTC
T ss_pred CHHHHH-HHHHHHHcC
Confidence 455554 556999984
No 10
>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} SCOP: g.3.6.1
Probab=11.63 E-value=74 Score=19.61 Aligned_cols=19 Identities=26% Similarity=0.978 Sum_probs=15.5
Q ss_pred ceeceeecccccccccccc
Q 024686 178 KKCRYLENSGCVGMCVNMC 196 (264)
Q Consensus 178 eKCRyLEeSgC~GmCvN~C 196 (264)
|-|-.|..--|+|.|+-.|
T Consensus 6 E~CdvfsqnCC~G~C~fvC 24 (26)
T 1f3k_A 6 EPCDVFSLDCCTGICLGVC 24 (26)
T ss_dssp CCCCSSSCCSTTSCCSSSC
T ss_pred CccccccccccccEEEEEE
Confidence 4577888888999998777
Done!