Query 024686
Match_columns 264
No_of_seqs 94 out of 96
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 12:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024686.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024686hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fs1b1 a.157.1.1 (B:86-140) C 22.8 37 0.0027 22.0 3.4 24 90-113 26-53 (55)
2 d1odha_ d.239.1.1 (A:) Mgcm1 { 18.0 22 0.0016 28.3 1.6 35 179-222 55-91 (158)
3 d1sopa_ g.71.1.1 (A:) Mini-col 15.2 21 0.0016 20.3 0.6 10 188-197 6-15 (26)
4 d1nexa1 a.157.1.1 (A:116-185) 13.9 76 0.0055 21.2 3.4 24 90-113 27-54 (70)
5 d1otga_ d.80.1.2 (A:) 5-carbox 13.6 10 0.00073 28.4 -1.6 71 48-120 6-86 (125)
6 d1xdpa1 a.7.15.1 (A:2-106) Pol 13.5 1.1E+02 0.0081 21.5 4.5 54 53-120 31-85 (105)
7 d1ha9a_ g.3.2.1 (A:) Trypsin i 13.3 25 0.0018 21.3 0.5 17 176-194 11-27 (34)
8 d2fug91 d.58.1.5 (9:26-179) NA 12.6 31 0.0023 25.6 1.1 21 187-219 75-95 (154)
9 d1szia_ a.24.23.1 (A:) Mannose 12.5 22 0.0016 29.6 0.2 10 150-159 211-220 (226)
10 d1v54j_ f.23.4.1 (J:) Mitochon 12.0 16 0.0012 24.7 -0.7 19 197-215 4-23 (58)
No 1
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.79 E-value=37 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=17.9
Q ss_pred ChhHHHHHHHH-H---hcCCCHHHHHHH
Q 024686 90 DYESFVDVSKR-V---MEGRSRQQQQEV 113 (264)
Q Consensus 90 gYdglVe~a~~-l---m~grs~~~q~~~ 113 (264)
+.++|++++-+ + ++|+|++|.|+.
T Consensus 26 ~I~~Lldl~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 26 DIKGLLDVTCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 56788888654 3 579999998764
No 2
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.99 E-value=22 Score=28.26 Aligned_cols=35 Identities=29% Similarity=0.629 Sum_probs=25.4
Q ss_pred eeceeecccccc--cccccccCcccchhhhccCCceeeccCCccce
Q 024686 179 KCRYLENSGCVG--MCVNMCKFPTQDFFTREFGLPLTMIPNFEDMS 222 (264)
Q Consensus 179 KCRyLEeSgC~G--mCvN~CKiPTQ~FF~d~~GlpLtM~PNFeD~S 222 (264)
+++.|..| |.| +|-|.|.+|. |..++|.|---|..
T Consensus 55 N~~ilKKS-CLGVlvCs~~C~lp~--------g~~~~lRPAicdkA 91 (158)
T d1odha_ 55 NSRILKKS-CLGVVVCSRDCSTEE--------GRKIYLRPAICDKA 91 (158)
T ss_dssp CTTCEEEE-ECCEEEETTCCCCSS--------SCCCEECCCSSHHH
T ss_pred Cceeeccc-ceEEEEecCccCCCC--------CCeeeechHHHHHH
Confidence 55666667 887 4999999996 67777777655443
No 3
>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp. [TaxId: 6086]}
Probab=15.18 E-value=21 Score=20.35 Aligned_cols=10 Identities=50% Similarity=1.288 Sum_probs=6.6
Q ss_pred cccccccccc
Q 024686 188 CVGMCVNMCK 197 (264)
Q Consensus 188 C~GmCvN~CK 197 (264)
|+..|+.+|+
T Consensus 6 cvaqcvptcp 15 (26)
T d1sopa_ 6 CVAQCVPTCP 15 (26)
T ss_dssp TTTCCCTTSC
T ss_pred hhhhccCCCc
Confidence 6666666664
No 4
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.92 E-value=76 Score=21.24 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=17.9
Q ss_pred ChhHHHHHHHH-H---hcCCCHHHHHHH
Q 024686 90 DYESFVDVSKR-V---MEGRSRQQQQEV 113 (264)
Q Consensus 90 gYdglVe~a~~-l---m~grs~~~q~~~ 113 (264)
++++|++++-+ + ++|+|++|.++.
T Consensus 27 ~I~~Ll~l~c~~vA~~ikgkt~eeiR~~ 54 (70)
T d1nexa1 27 NIKPLLDAGCKVVAEMIRGRSPEEIRRT 54 (70)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 67889988654 3 569999987665
No 5
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) {Escherichia coli [TaxId: 562]}
Probab=13.64 E-value=10 Score=28.43 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=41.3
Q ss_pred cccCcHHHHHHHHHHHHHHHHHc---CCCCCchhhhhccccc-------CCCChhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024686 48 KYNDGFFEKAFMTLFARKMEKFA---SPAKSKTETKKKRWFD-------FGYDYESFVDVSKRVMEGRSRQQQQEVVREV 117 (264)
Q Consensus 48 ~Y~ds~lD~~~l~lF~~km~~~~---G~~~~~~~~~k~~~~~-------~~~gYdglVe~a~~lm~grs~~~q~~~v~~v 117 (264)
+|.++.-|.+=+.-|-.+|.+.+ |.-+ ....|-.... .|..=++||.+.-+|+.|||.++.+++...+
T Consensus 6 EyS~nL~~~~d~~~L~~~l~~~~~~tg~F~--~~~IK~Ra~~~~~~~vadg~~~~~Fvhv~l~il~GRs~e~k~~l~~~l 83 (125)
T d1otga_ 6 ECSDNIREEADLPGLFAKVNPTLAATGIFP--LAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAGEML 83 (125)
T ss_dssp EEEGGGHHHHTHHHHHHHHHHHHHTTSSSC--GGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred EeCCChhhcCCHHHHHHHHHHHHHhCCCCC--ccccEEeEEEcceEEECCCCCCCeEEEEEeeecCCCCHHHHHHHHHHH
Confidence 68888777764555555555443 3211 1112200000 1212246999999999999999988887665
Q ss_pred HHh
Q 024686 118 LLS 120 (264)
Q Consensus 118 L~s 120 (264)
+..
T Consensus 84 ~~~ 86 (125)
T d1otga_ 84 FEL 86 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 6
>d1xdpa1 a.7.15.1 (A:2-106) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=13.51 E-value=1.1e+02 Score=21.52 Aligned_cols=54 Identities=9% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHHHH-HHHHHHHHHHHHcCCCCCchhhhhcccccCCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 024686 53 FFEKA-FMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120 (264)
Q Consensus 53 ~lD~~-~l~lF~~km~~~~G~~~~~~~~~k~~~~~~~~gYdglVe~a~~lm~grs~~~q~~~v~~vL~s 120 (264)
.+||+ |+++|+..|-|+--..- .|.-..++....--.|.++.+|-+.+......
T Consensus 31 llERlrFl~I~ssNLDEFFmVRV--------------AgLk~q~~~~~~~~dg~tp~e~L~~I~~~v~~ 85 (105)
T d1xdpa1 31 LIERMRFLGIYSNNLDEFYKVRF--------------AELKRRIIISEEQGSNSHSRHLLGKIQSRVLK 85 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH--------------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhhH--------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 46777 88888888888753210 12223344443333477887777666554443
No 7
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=13.25 E-value=25 Score=21.30 Aligned_cols=17 Identities=47% Similarity=1.107 Sum_probs=13.6
Q ss_pred EEceeceeecccccccccc
Q 024686 176 HIKKCRYLENSGCVGMCVN 194 (264)
Q Consensus 176 ~IeKCRyLEeSgC~GmCvN 194 (264)
.+|||| ..|.|.|-|+-
T Consensus 11 ilkkcr--rdsdc~~~cic 27 (34)
T d1ha9a_ 11 ILKKCR--RDSDCPGACIC 27 (34)
T ss_dssp CCCBCS--SGGGSCTTCCB
T ss_pred HHHHhc--cccCCCcccee
Confidence 468898 57999999974
No 8
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
Probab=12.58 E-value=31 Score=25.62 Aligned_cols=21 Identities=29% Similarity=0.694 Sum_probs=14.7
Q ss_pred cccccccccccCcccchhhhccCCceeeccCCc
Q 024686 187 GCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFE 219 (264)
Q Consensus 187 gC~GmCvN~CKiPTQ~FF~d~~GlpLtM~PNFe 219 (264)
+| |.|+..|+.= -|+|++|||
T Consensus 75 ~C-G~Cve~CPt~-----------AI~~~~~~e 95 (154)
T d2fug91 75 FC-GLCEEACPTG-----------AIVLGYDFE 95 (154)
T ss_dssp CC-THHHHHCSSS-----------CEEECSCCC
T ss_pred CC-CCchhhCCCC-----------eEeccCccc
Confidence 45 7999999842 466666665
No 9
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.46 E-value=22 Score=29.58 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=7.7
Q ss_pred hhhcccccce
Q 024686 150 PFFHWLVGPS 159 (264)
Q Consensus 150 ~~f~WLvGP~ 159 (264)
.=..|||||=
T Consensus 211 tPL~WLVGPF 220 (226)
T d1szia_ 211 TPAMWLVGPF 220 (226)
T ss_dssp CCTTCEEEEE
T ss_pred CCcccccCCC
Confidence 3468999995
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.99 E-value=16 Score=24.72 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=16.0
Q ss_pred cCc-ccchhhhccCCceeec
Q 024686 197 KFP-TQDFFTREFGLPLTMI 215 (264)
Q Consensus 197 KiP-TQ~FF~d~~GlpLtM~ 215 (264)
|+| .|+.|+++=|+|+++.
T Consensus 4 kv~e~Qk~FQ~~~g~PVhLK 23 (58)
T d1v54j_ 4 RVAEKQKLFQEDNGLPVHLK 23 (58)
T ss_dssp CHHHHHHHHHCSSCCCTTTT
T ss_pred hhHHHHHHhcCCCCceEEec
Confidence 455 6999999999999875
Done!