BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024687
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 359 bits (921), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/233 (75%), Positives = 190/233 (81%), Gaps = 6/233 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 16 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 69
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 70 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 129
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 130 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 189
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ 252
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQ
Sbjct: 190 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 242
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 358 bits (918), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/233 (75%), Positives = 190/233 (81%), Gaps = 6/233 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 39 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 92
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 93 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 152
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 153 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 212
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ 252
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQ
Sbjct: 213 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 265
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 358 bits (918), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/233 (75%), Positives = 190/233 (81%), Gaps = 6/233 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 16 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 69
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 70 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 129
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 130 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 189
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ 252
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQ
Sbjct: 190 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 242
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 357 bits (915), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 176/233 (75%), Positives = 189/233 (81%), Gaps = 6/233 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 35 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 88
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKV L+RAL+YM+AQCLG
Sbjct: 89 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLG 148
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 149 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 208
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ 252
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQ
Sbjct: 209 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 261
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 356 bits (914), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 176/233 (75%), Positives = 189/233 (81%), Gaps = 6/233 (2%)
Query: 20 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
KDY DPPPAP D EL WSF+RA IAEFIA IG+ +T C
Sbjct: 39 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 92
Query: 80 GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKV L+RAL+YM+AQCLG
Sbjct: 93 GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLG 152
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
AICG G VKAF K YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 153 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 212
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ 252
RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N K WDDQ
Sbjct: 213 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 265
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 117/217 (53%), Gaps = 10/217 (4%)
Query: 34 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGG 93
E K F+RAV+AEF+A +G+K N Q + ++ AFG
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDN----VKVSLAFGL 58
Query: 94 MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS 153
I L ISG H+NPAVT GL L ++S+ RAL+Y++AQC+GAI + S
Sbjct: 59 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS 118
Query: 154 YYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIG 213
G N+LADG N G GLG EIIGT LV V + TD +R RD + APL IG
Sbjct: 119 LTGN-SLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIG 173
Query: 214 FAVFMVHLATIPITGTGINPARSFGAAVI-YNKEKAW 249
+V + HL I TG GINPARSFG+AVI +N W
Sbjct: 174 LSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHW 210
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 119/218 (54%), Gaps = 10/218 (4%)
Query: 34 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFG 92
E K F+RAV+AEF+A +G+ N T G V + ++ AFG
Sbjct: 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTT---GAVQDNVKVSLAFG 59
Query: 93 GMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQK 152
I L ISG H+NPAVT GL L ++S++RA++Y++AQC+GAI +
Sbjct: 60 LSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119
Query: 153 SYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPI 212
S + G N LA G N G GLG EIIGT LV V + TD +R RD + PL I
Sbjct: 120 SLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAI 174
Query: 213 GFAVFMVHLATIPITGTGINPARSFGAAVI-YNKEKAW 249
GF+V + HL I TG GINPARSFG++VI +N + W
Sbjct: 175 GFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHW 212
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 15/222 (6%)
Query: 30 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAW 89
++ F+ + +F++AV AEF+A I + +P L D ++ I+
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-LPVD------MVLISL 53
Query: 90 AFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKA 149
FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G +
Sbjct: 54 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 111
Query: 150 FQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLA 208
+ + + GG G + G GL E+I TF LV+T+F++ D KR+ V
Sbjct: 112 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV---- 167
Query: 209 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-NKEKAW 249
L IGF+V + HL I TG +NPARSFG AVI N E W
Sbjct: 168 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 209
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 15/222 (6%)
Query: 30 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAW 89
++ F+ + +F++AV AEF+A I + +P L D ++ I+
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-LPVD------MVLISL 53
Query: 90 AFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKA 149
FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G +
Sbjct: 54 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 111
Query: 150 FQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLA 208
+ + + GG G + G GL E+I TF LV+T+F++ D KR+ V
Sbjct: 112 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV---- 167
Query: 209 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-NKEKAW 249
L IGF+V + HL I TG +NPARSFG AVI N E W
Sbjct: 168 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 209
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 15/222 (6%)
Query: 30 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAW 89
++ F+ + +F++AV AEF+A I + +P L D ++ I+
Sbjct: 40 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENP-LPVD------MVLISL 92
Query: 90 AFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKA 149
FG I +V C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G +
Sbjct: 93 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 150
Query: 150 FQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLA 208
+ + + GG G + G GL E+I TF LV+T+F++ D KR+ V
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV---- 206
Query: 209 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-NKEKAW 249
L IGF+V + HL I TG +NPARSFG AVI N E W
Sbjct: 207 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHW 248
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 112/212 (52%), Gaps = 15/212 (7%)
Query: 40 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILV 99
+F++AV AEF+A I + P L D ++ I+ FG I +V
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKP-LPVD------MVLISLCFGLSIATMV 54
Query: 100 YCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG 159
C ISGGHINPAVT + RK+S+ +++ Y+ AQCLGAI G G + + + + G
Sbjct: 55 QCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVG 112
Query: 160 G-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 218
G G + G GL E+I TF LV+T+F++ D KR+ + L IGF+V +
Sbjct: 113 GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAI 168
Query: 219 VHLATIPITGTGINPARSFGAAVIY-NKEKAW 249
HL I TG +NPARSFG AVI N E W
Sbjct: 169 GHLFAINYTGASMNPARSFGPAVIMGNWENHW 200
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 110/214 (51%), Gaps = 20/214 (9%)
Query: 34 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGG 93
+E+ +F +AV AEF+A + + S IL IA AFG
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQIALAFGL 52
Query: 94 MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS 153
I L +SGGHINPA+T L +G ++SL+RA Y+ AQ +GAI G G + + +
Sbjct: 53 AIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL--YGVA 110
Query: 154 YYNRYGGGANELADGY-NKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LP 211
N G A + +G + E+I TF L +F++TD +R++ PV +P L
Sbjct: 111 PLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALS 165
Query: 212 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNK 245
IG +V + HL I TG +NPARSFG AV+ N+
Sbjct: 166 IGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR 199
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 35 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGM 94
EL SF+RA+ AEF A +G + P G + +L +A AFG
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLA 51
Query: 95 IFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY 154
+ LV ISG H+NPAVTF +G ++SL+RA+ YMVAQ LGA+ G + +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPA 111
Query: 155 YNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 214
R N L G + G EI T V +F+ D +R+ R V L +GF
Sbjct: 112 V-RGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 215 AVFMVHLATIPITGTGINPARSFGAAVI 242
++ + HL + TG G+NPARSF A++
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL 194
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 35 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGM 94
EL SF+RA+ AEF A +G + P G + +L +A AFG
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLA 51
Query: 95 IFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY 154
+ LV ISG H+NPAVTF +G ++SL+RA+ Y+VAQ LGA+ G + +
Sbjct: 52 LATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPA 111
Query: 155 YNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 214
R N L G + G EI T V +F+ D +R+ R V L +GF
Sbjct: 112 V-RGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGF 166
Query: 215 AVFMVHLATIPITGTGINPARSFGAAVI 242
++ + HL + TG G+NPARSF A++
Sbjct: 167 SLTLGHLFGMYYTGAGMNPARSFAPAIL 194
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Query: 40 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILV 99
SF+RA+ AEF A +G + P G + +L +A AFG + LV
Sbjct: 4 SFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLV 52
Query: 100 YCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG 159
ISG H+NPAVTF +G ++SL+RA+ Y+VAQ LGA+ G + + R
Sbjct: 53 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGN 111
Query: 160 GGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 219
N L G + G EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 112 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 167
Query: 220 HLATIPITGTGINPARSFGAAVI-YNKEKAW 249
HL + TG G+NPARSF A++ N W
Sbjct: 168 HLFGMYYTGAGMNPARSFAPAILTRNFTNHW 198
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Query: 40 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILV 99
SF+RA+ AEF A +G + P G + +L +A AFG + LV
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLV 50
Query: 100 YCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG 159
ISG H+NPAVTF +G ++SL+RA+ Y+VAQ LGA+ G + + R
Sbjct: 51 QAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGN 109
Query: 160 GGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMV 219
N L G + G EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 110 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 165
Query: 220 HLATIPITGTGINPARSFGAAVI-YNKEKAW 249
HL + TG G+NPARSF A++ N W
Sbjct: 166 HLFGMYYTGAGMNPARSFAPAILTRNFTNHW 196
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A ++HL +IP+T T +NPARS A+ + W
Sbjct: 153 HGATDKFAPAG------FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIF---QGGW 203
Query: 250 DDQVLQFF 257
+ L FF
Sbjct: 204 ALEQLWFF 211
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 92
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 93 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 149
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T T +NPARS A+ + W
Sbjct: 150 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGW 200
Query: 250 DDQVLQFF 257
+ L FF
Sbjct: 201 ALEQLWFF 208
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A A+G + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T T +NPARS A+ + W
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGW 203
Query: 250 DDQVLQFF 257
+ L FF
Sbjct: 204 ALEQLWFF 211
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T +NPARS A+ + W
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGW 203
Query: 250 DDQVLQFF 257
+ L FF
Sbjct: 204 ALEQLWFF 211
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++HL +IP+T +NPARS A+ + W
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGW 203
Query: 250 DDQVLQFF 257
+ L FF
Sbjct: 204 ALEQLWFF 211
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A AFG + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++ L +IP+T +NPARS A+ + W
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGW 203
Query: 250 DDQVLQFF 257
+ L FF
Sbjct: 204 ALEQLWFF 211
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGA 140
G+G G+A A+G + + + ISGGH NPAVT GL+ G + + Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 141 ICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTV 189
I GF A N YG GY+ + L E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVI 152
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAW 249
ATD A AP+ IG A+ ++ L +IP+T +NPARS A+ + W
Sbjct: 153 HGATDKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGW 203
Query: 250 DDQVLQFF 257
+ L FF
Sbjct: 204 ALEQLWFF 211
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 84 ILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 143
++ I++ FG + + V+ T +SGG++NPAVT L L R + R +L Q + +
Sbjct: 85 LIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAA 144
Query: 144 CGFVKAF---QKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 200
G A + ++ N GGGA ++ GL E GT +L TV K A
Sbjct: 145 AGAASAMTPGEIAFANALGGGA-------SRTRGLFLEAFGTAILCLTVLMLAVEKHRAT 197
Query: 201 DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 241
AP IG A+ + HL I TG G+NPARSFG AV
Sbjct: 198 -----WFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAV 233
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 87/193 (45%), Gaps = 35/193 (18%)
Query: 81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKV---SLI---------- 127
G+G G+A AFG + + Y GISGGH NPAV+ GL + + SL+
Sbjct: 61 GIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGA 120
Query: 128 ---RALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFV 184
A LY++A I GF N YG GY+ + L EII T
Sbjct: 121 IVAAAALYVIATGKAGIDLGGFAS-------NGYG---EHSPGGYSLVSALLIEIILTAF 170
Query: 185 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN 244
+ + +T + A AP+ IG A+ ++HL +IP+T T +NPARS G A+
Sbjct: 171 FLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG 224
Query: 245 KEKAWDDQVLQFF 257
W Q L F
Sbjct: 225 ---GWALQQLWLF 234
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 87 IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGF 146
I+ FG + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA C
Sbjct: 44 ISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAAL 103
Query: 147 VKA--------FQKSYYNRYGGGAN-ELADGY--------NKGTGLGAEIIGTFVLVYTV 189
V F+++++ G + +LA + N E++ T +L+ +
Sbjct: 104 VYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI 163
Query: 190 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 241
+ TD LAPL IG + ++ + P+TGT +NPAR FG V
Sbjct: 164 LALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKV 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 85 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 144
+ I AFG I +Y ISG HINPAVT GL+ +K + Y++AQ LGA G
Sbjct: 56 VAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGS 115
Query: 145 G-FVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSH 203
F++ G GA G + + AE++GTF+L+ T+ +R+ +
Sbjct: 116 FIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-- 173
Query: 204 VPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 238
A + IG V + I+G+ +NPAR+FG
Sbjct: 174 ---FAGIIIGLTVAGIITTLGNISGSSLNPARTFG 205
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 85 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 144
+ + W G + + +Y TAG+SG H+NPAVT L+L + + ++V+Q GA C
Sbjct: 44 ISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAA 101
Query: 145 GFVKA--------FQKSYYNRYGGGAN-ELADGY--------NKGTGLGAEIIGTFVLVY 187
V F+++++ G + +LA + N E++ T +L+
Sbjct: 102 ALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161
Query: 188 TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 241
+ + TD LAPL IG + ++ + P+TG +NPAR FG V
Sbjct: 162 LILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 87 IAWAFGGMIFILVYCTAGISGGHINPAVTFGL-----FLGRKVSLIRALLYMVAQCLGAI 141
I AF I ++Y ISG HINPAVT L F GR+V + Y+VAQ +GA
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREV-----VPYIVAQFIGAA 113
Query: 142 CGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSAR 200
G A GG GA G G + E IGTF+L+ + +R+
Sbjct: 114 LGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP- 172
Query: 201 DSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 238
P A L IG V + ITG+ +NPAR+FG
Sbjct: 173 ----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 85 LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 143
L + W G +F + +A +SG H+N AV+ GL K L + +Y AQ LGA G
Sbjct: 46 LCLGW--GLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,910,159
Number of Sequences: 62578
Number of extensions: 313083
Number of successful extensions: 662
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 35
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)