Query 024688
Match_columns 264
No_of_seqs 114 out of 1109
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 9.6E-39 2.1E-43 292.0 16.5 236 21-263 30-268 (437)
2 PTZ00206 amino acid transporte 100.0 3.1E-38 6.6E-43 294.2 18.4 233 25-263 56-298 (467)
3 PF01490 Aa_trans: Transmembra 100.0 2.2E-36 4.8E-41 277.1 -0.6 232 27-263 1-235 (409)
4 KOG1304 Amino acid transporter 100.0 7.5E-32 1.6E-36 243.8 17.3 217 26-252 44-272 (449)
5 PLN03074 auxin influx permease 100.0 5.8E-29 1.3E-33 231.6 21.0 215 25-253 42-265 (473)
6 KOG1305 Amino acid transporter 100.0 2E-30 4.4E-35 236.0 7.2 226 26-262 3-235 (411)
7 COG0814 SdaC Amino acid permea 99.9 1.4E-26 3E-31 212.7 18.6 228 25-262 5-234 (415)
8 KOG4303 Vesicular inhibitory a 99.9 2.5E-27 5.4E-32 204.8 5.3 219 26-255 114-336 (524)
9 PRK10483 tryptophan permease; 99.8 7.8E-18 1.7E-22 153.4 19.9 222 26-262 8-232 (414)
10 PRK09664 tryptophan permease T 99.8 1.2E-17 2.7E-22 152.0 19.0 216 26-259 6-230 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.8 8.1E-17 1.8E-21 147.2 19.5 221 28-261 2-223 (394)
12 PRK15132 tyrosine transporter 99.7 1.1E-16 2.3E-21 146.3 19.3 216 30-262 4-221 (403)
13 TIGR00837 araaP aromatic amino 99.7 6.6E-17 1.4E-21 147.4 15.7 216 34-262 2-218 (381)
14 PRK13629 threonine/serine tran 99.6 6.5E-14 1.4E-18 128.1 19.4 222 35-261 25-258 (443)
15 TIGR00814 stp serine transport 99.5 9.6E-13 2.1E-17 120.4 19.2 216 35-261 9-232 (397)
16 PRK10655 potE putrescine trans 99.1 1.2E-08 2.7E-13 94.7 20.4 224 26-262 5-229 (438)
17 PRK10435 cadB lysine/cadaverin 99.1 1.1E-08 2.4E-13 95.1 19.1 223 26-262 4-227 (435)
18 TIGR00905 2A0302 transporter, 99.0 4.1E-08 8.9E-13 92.2 20.7 228 26-262 6-238 (473)
19 PRK11021 putative transporter; 99.0 3.4E-08 7.3E-13 91.0 19.5 215 30-262 2-217 (410)
20 TIGR00909 2A0306 amino acid tr 99.0 2.3E-08 4.9E-13 92.6 18.3 223 26-262 2-235 (429)
21 PRK10644 arginine:agmatin anti 99.0 4.2E-08 9E-13 91.4 20.1 222 26-262 7-231 (445)
22 TIGR01773 GABAperm gamma-amino 99.0 3.5E-08 7.5E-13 92.1 19.5 221 25-260 10-239 (452)
23 PRK11049 D-alanine/D-serine/gl 99.0 1.3E-07 2.7E-12 88.9 21.2 223 24-260 17-249 (469)
24 PRK11387 S-methylmethionine tr 99.0 1.2E-07 2.6E-12 89.0 20.5 225 25-262 12-246 (471)
25 PRK10238 aromatic amino acid t 98.9 1.5E-07 3.3E-12 88.0 19.3 220 25-260 10-238 (456)
26 PRK10249 phenylalanine transpo 98.9 1.7E-07 3.7E-12 87.7 19.7 223 24-262 18-249 (458)
27 TIGR00906 2A0303 cationic amin 98.9 1.4E-07 3.1E-12 90.3 18.9 232 24-262 25-271 (557)
28 TIGR00908 2A0305 ethanolamine 98.8 3.4E-07 7.3E-12 85.2 18.8 225 24-262 4-231 (442)
29 PRK10746 putative transport pr 98.8 5.5E-07 1.2E-11 84.4 20.0 222 25-261 8-239 (461)
30 TIGR03810 arg_ornith_anti argi 98.8 6.1E-07 1.3E-11 84.2 20.2 226 27-262 1-234 (468)
31 KOG3832 Predicted amino acid t 98.8 5.2E-08 1.1E-12 79.8 11.2 217 33-257 16-309 (319)
32 KOG1287 Amino acid transporter 98.8 6.5E-08 1.4E-12 89.3 13.0 228 25-263 10-245 (479)
33 PRK10836 lysine transporter; P 98.8 5.8E-07 1.2E-11 84.8 19.9 224 25-262 13-245 (489)
34 TIGR00912 2A0309 spore germina 98.8 2.6E-07 5.6E-12 83.6 16.3 211 29-261 3-217 (359)
35 TIGR00913 2A0310 amino acid pe 98.8 5.7E-07 1.2E-11 84.5 18.9 224 26-262 1-237 (478)
36 PRK15049 L-asparagine permease 98.8 1.2E-06 2.5E-11 83.0 19.9 225 25-261 26-259 (499)
37 PRK10580 proY putative proline 98.7 2.3E-06 5E-11 80.0 20.9 222 25-260 7-237 (457)
38 TIGR00911 2A0308 L-type amino 98.7 1.8E-06 4E-11 81.7 19.4 228 24-262 39-275 (501)
39 PRK11357 frlA putative fructos 98.7 2.1E-06 4.6E-11 79.9 19.4 226 25-262 6-235 (445)
40 PF13520 AA_permease_2: Amino 98.7 4.2E-07 9E-12 84.0 14.4 218 30-262 2-226 (426)
41 PRK10197 gamma-aminobutyrate t 98.6 3.2E-06 6.8E-11 78.9 18.0 209 39-261 4-220 (446)
42 TIGR00930 2a30 K-Cl cotranspor 98.5 4.1E-06 9E-11 84.6 15.9 228 26-262 75-320 (953)
43 TIGR03428 ureacarb_perm permea 98.4 5.4E-05 1.2E-09 71.2 21.3 229 24-262 10-253 (475)
44 COG0531 PotE Amino acid transp 98.4 2.4E-05 5.3E-10 72.8 18.8 225 26-262 11-241 (466)
45 PF03845 Spore_permease: Spore 98.4 0.0001 2.2E-09 65.7 20.2 199 29-251 2-205 (320)
46 COG0833 LysP Amino acid transp 98.3 2.5E-05 5.4E-10 73.0 14.9 223 25-260 42-272 (541)
47 TIGR00907 2A0304 amino acid pe 98.1 0.0003 6.5E-09 66.3 18.1 231 25-262 10-257 (482)
48 PRK15238 inner membrane transp 98.0 0.00097 2.1E-08 63.1 19.8 223 26-262 6-251 (496)
49 COG1113 AnsP Gamma-aminobutyra 98.0 0.0015 3.2E-08 60.2 19.0 219 25-258 11-239 (462)
50 PF00324 AA_permease: Amino ac 97.9 4.6E-05 1E-09 71.7 8.9 217 39-263 7-241 (478)
51 TIGR00910 2A0307_GadC glutamat 97.9 0.00094 2E-08 63.4 17.2 38 224-262 196-234 (507)
52 TIGR00800 ncs1 NCS1 nucleoside 97.7 0.017 3.7E-07 53.9 22.8 208 31-252 23-239 (442)
53 TIGR03813 put_Glu_GABA_T putat 97.5 0.0093 2E-07 56.1 17.1 32 230-262 202-234 (474)
54 PF02554 CstA: Carbon starvati 97.4 0.014 3.1E-07 52.6 16.9 114 13-139 40-157 (376)
55 COG3949 Uncharacterized membra 97.4 0.007 1.5E-07 53.6 14.1 131 33-179 7-142 (349)
56 PRK11375 allantoin permease; P 97.3 0.15 3.2E-06 48.3 23.0 221 15-251 13-258 (484)
57 KOG1286 Amino acid transporter 97.2 0.0014 3.1E-08 62.6 8.1 232 24-262 27-272 (554)
58 TIGR00835 agcS amino acid carr 97.1 0.049 1.1E-06 50.5 17.4 146 27-183 45-196 (425)
59 TIGR02119 panF sodium/pantothe 97.0 0.29 6.2E-06 46.1 21.5 150 24-186 37-191 (471)
60 PRK09442 panF sodium/panthothe 96.9 0.25 5.4E-06 46.7 20.8 152 24-187 38-193 (483)
61 PRK15015 carbon starvation pro 96.8 0.043 9.4E-07 52.9 13.9 155 12-186 70-229 (701)
62 COG1966 CstA Carbon starvation 96.6 0.075 1.6E-06 50.2 14.2 119 10-139 37-157 (575)
63 TIGR02358 thia_cytX probable h 96.4 0.75 1.6E-05 42.2 19.6 142 31-189 7-148 (386)
64 TIGR00813 sss transporter, SSS 96.4 0.51 1.1E-05 43.4 18.3 147 27-186 3-150 (407)
65 PF00474 SSF: Sodium:solute sy 96.0 0.7 1.5E-05 42.4 17.0 148 26-186 5-154 (406)
66 PRK11017 codB cytosine permeas 95.9 1.4 3.1E-05 40.6 19.8 82 94-184 70-151 (404)
67 PF02133 Transp_cyt_pur: Perme 95.8 0.18 3.9E-06 46.9 12.5 112 26-144 6-119 (440)
68 PRK12488 acetate permease; Pro 95.5 2.6 5.7E-05 40.6 21.2 149 24-186 64-214 (549)
69 PRK09395 actP acetate permease 95.4 2.6 5.7E-05 40.5 21.8 147 25-184 67-214 (551)
70 TIGR02711 symport_actP cation/ 95.0 3.6 7.7E-05 39.7 21.0 147 24-184 64-212 (549)
71 TIGR00796 livcs branched-chain 94.9 0.89 1.9E-05 41.6 13.6 78 95-180 255-332 (378)
72 KOG1289 Amino acid transporter 94.7 1.1 2.4E-05 42.5 13.8 220 31-258 55-288 (550)
73 COG1457 CodB Purine-cytosine p 94.3 4.6 9.9E-05 37.8 17.2 141 97-252 83-225 (442)
74 PF05525 Branch_AA_trans: Bran 93.7 1.4 3E-05 41.0 12.2 77 96-180 262-338 (427)
75 COG0591 PutP Na+/proline sympo 92.5 9.8 0.00021 36.1 21.6 146 26-183 37-186 (493)
76 PRK15419 proline:sodium sympor 92.0 11 0.00025 35.7 19.2 154 24-186 37-194 (502)
77 TIGR03648 Na_symport_lg probab 91.9 12 0.00027 36.0 18.6 147 25-184 30-177 (552)
78 COG1114 BrnQ Branched-chain am 91.2 9.9 0.00022 35.1 14.0 78 96-181 264-341 (431)
79 PRK15433 branched-chain amino 89.0 11 0.00024 35.2 12.8 76 96-180 266-341 (439)
80 PF01566 Nramp: Natural resist 79.1 49 0.0011 29.8 13.4 80 96-183 43-124 (358)
81 TIGR02121 Na_Pro_sym sodium/pr 78.0 63 0.0014 30.5 19.3 152 25-184 34-188 (487)
82 KOG2082 K+/Cl- cotransporter K 74.3 23 0.0005 35.4 9.0 166 26-197 112-294 (1075)
83 PF01235 Na_Ala_symp: Sodium:a 71.4 89 0.0019 29.1 18.8 160 26-195 16-182 (416)
84 PHA02764 hypothetical protein; 67.5 47 0.001 29.9 8.8 27 25-52 10-37 (399)
85 TIGR00796 livcs branched-chain 62.5 1.3E+02 0.0028 27.7 17.0 67 37-113 3-72 (378)
86 TIGR01197 nramp NRAMP (natural 59.1 1.5E+02 0.0032 27.3 17.2 128 36-179 11-142 (390)
87 PF01235 Na_Ala_symp: Sodium:a 57.3 66 0.0014 30.0 8.3 90 98-194 296-385 (416)
88 KOG1289 Amino acid transporter 54.0 2.1E+02 0.0046 27.6 13.6 44 96-140 326-369 (550)
89 TIGR00909 2A0306 amino acid tr 53.8 1.8E+02 0.0039 26.6 15.4 45 96-141 265-309 (429)
90 PF02028 BCCT: BCCT family tra 53.5 2.1E+02 0.0045 27.3 18.6 93 96-190 163-257 (485)
91 PRK00701 manganese transport p 53.5 2E+02 0.0042 27.0 18.8 42 95-137 94-135 (439)
92 COG0733 Na+-dependent transpor 44.5 2.7E+02 0.006 26.1 11.9 209 29-251 9-245 (439)
93 PRK10484 putative transporter; 41.7 3.2E+02 0.0069 26.1 18.9 155 24-186 35-195 (523)
94 TIGR00835 agcS amino acid carr 40.7 1.8E+02 0.0039 27.2 8.5 81 103-191 328-408 (425)
95 KOG2083 Na+/K+ symporter [Inor 38.8 57 0.0012 31.7 4.9 93 47-144 50-143 (643)
96 TIGR03810 arg_ornith_anti argi 34.9 3.8E+02 0.0082 25.0 15.0 45 96-141 265-309 (468)
97 PF00209 SNF: Sodium:neurotran 31.7 4.6E+02 0.01 25.0 14.1 99 30-140 6-109 (523)
98 PF02028 BCCT: BCCT family tra 31.3 4.7E+02 0.01 24.9 11.1 117 61-184 343-465 (485)
99 TIGR00905 2A0302 transporter, 30.6 4.5E+02 0.0098 24.5 14.5 44 97-141 270-313 (473)
100 PF09125 COX2-transmemb: Cytoc 29.1 1E+02 0.0023 18.1 3.1 24 54-77 12-35 (38)
101 PRK14749 hypothetical protein; 26.5 98 0.0021 17.3 2.6 16 59-74 6-21 (30)
102 COG4147 DhlC Predicted symport 26.2 5.9E+02 0.013 24.4 14.5 83 95-184 104-186 (529)
103 COG1115 AlsT Na+/alanine sympo 26.0 5.7E+02 0.012 24.2 11.2 125 58-191 299-426 (452)
104 PRK09950 putative transporter; 25.5 6.1E+02 0.013 24.4 13.2 89 94-184 166-261 (506)
105 KOG2174 Leptin receptor gene-r 24.4 2.2E+02 0.0048 21.8 5.0 55 30-85 65-121 (131)
106 COG1914 MntH Mn2+ and Fe2+ tra 24.2 5.9E+02 0.013 23.8 17.0 45 96-141 78-122 (416)
107 TIGR02106 cyd_oper_ybgT cyd op 24.1 1.1E+02 0.0024 17.1 2.6 16 59-74 6-21 (30)
108 KOG2927 Membrane component of 24.0 52 0.0011 29.7 1.9 23 160-183 203-225 (372)
109 COG1115 AlsT Na+/alanine sympo 23.8 6.3E+02 0.014 23.9 16.8 155 26-194 60-225 (452)
110 PF11085 YqhR: Conserved membr 23.0 2.8E+02 0.006 22.5 5.7 73 109-186 68-140 (173)
111 TIGR01301 GPH_sucrose GPH fami 23.0 4.6E+02 0.01 24.8 8.2 59 46-110 252-310 (477)
112 PF08173 YbgT_YccB: Membrane b 21.9 1.3E+02 0.0029 16.6 2.6 16 59-74 6-21 (28)
113 COG1292 BetT Choline-glycine b 21.5 7.5E+02 0.016 24.0 9.4 140 59-205 353-498 (537)
114 TIGR00842 bcct choline/carniti 21.4 7E+02 0.015 23.6 13.7 34 94-128 119-157 (453)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-39 Score=291.95 Aligned_cols=236 Identities=29% Similarity=0.519 Sum_probs=204.9
Q ss_pred ccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc-cccCcccccHHH
Q 024688 21 AAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRE 99 (264)
Q Consensus 21 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~-~~~~~~~~sy~~ 99 (264)
+....+|++||++|++|.++.++|.|+|+||||++++||+.|+++++++++++.||.++|.+|.+.+ +..++|+.+|.|
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d 109 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD 109 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence 3334588899999999999999999999999999999999999999999999999999999999885 345567789999
Q ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCC-CchhhHHHHHHHHHHHHHhcCCCcchhhHH
Q 024688 100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SLKLYEFIAMVTVVMIVLSQLPTFHSLRHI 178 (264)
Q Consensus 100 l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~i~~pls~~r~l~~l~~~ 178 (264)
+++++||++ +|+++.+++++.++|.|+.|++..+|++..+++.++.|. ..+...|+++++++.+|++++||++.+++.
T Consensus 110 l~~~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~ 188 (437)
T KOG1303|consen 110 LGQAAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYL 188 (437)
T ss_pred HHHHHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHH
Confidence 999999996 799999999999999999999999999999999877654 555677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccccee
Q 024688 179 NLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNR 257 (264)
Q Consensus 179 S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~ 257 (264)
|..+.++++.+..+.++.++.++.+.+.+..++...++.. ..++++|+++|+| +|.++||||++||+|++ |+|
T Consensus 189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~----~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~ 262 (437)
T KOG1303|consen 189 SLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIP----TVFTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKK 262 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCc----chhhhhhheeeeecCCeeeeehHhhcCCchh--hhh
Confidence 9999999999999888888888765433333333222111 1189999999999 99999999999999985 999
Q ss_pred eeeccc
Q 024688 258 IQTFSR 263 (264)
Q Consensus 258 ~~~~~~ 263 (264)
+..+++
T Consensus 263 ~~lis~ 268 (437)
T KOG1303|consen 263 ALLISY 268 (437)
T ss_pred HHHHHH
Confidence 887664
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3.1e-38 Score=294.22 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=183.8
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
..++++..++++|++|+++|+|+|+||+||+++||++|+++++++++++.||.++|.+++++ .+. .||+|+++++
T Consensus 56 ~~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~--~sY~~la~~~ 130 (467)
T PTZ00206 56 IIPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNI--RTYEGVARVL 130 (467)
T ss_pred ccCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC--CCHHHHHHHH
Confidence 35667799999999999999999999999999999999999999999999999999999886 443 4999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccC-CC----CchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP-NG----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~-~~----~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S 179 (264)
||| +|++++++++.+.++|+|++|+++++|.++.+++.... +. ..++..+.+++.++++|++++|++++++++|
T Consensus 131 ~G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 131 LGP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred hCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence 999 69999999999999999999999999999988764321 10 1122334466778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCc---h-hhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK---S-ARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE 254 (264)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~ 254 (264)
.+++++.++.++.+++.++.++.+++.++.+....... . ....+.+.++|+++||| ||.|+|++++|||||+++|
T Consensus 210 ~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~ 289 (467)
T PTZ00206 210 TIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGK 289 (467)
T ss_pred HHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhH
Confidence 99998666555555555554433222111111100000 0 01125789999999999 9999999999999999999
Q ss_pred ceeeeeccc
Q 024688 255 MNRIQTFSR 263 (264)
Q Consensus 255 m~~~~~~~~ 263 (264)
|+++...++
T Consensus 290 ~~~v~~~s~ 298 (467)
T PTZ00206 290 FVLASTIAM 298 (467)
T ss_pred HHHHHHHHH
Confidence 998876554
No 3
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.2e-36 Score=277.06 Aligned_cols=232 Identities=24% Similarity=0.436 Sum_probs=190.1
Q ss_pred cCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhC
Q 024688 27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (264)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (264)
||+|++++++|++|+++|+|+|+||++++++||++|++++++++.++.||.++|.|++++.+ .+.+..+|+|++++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccccccccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999988632 12345699999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 024688 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS 186 (264)
Q Consensus 107 ~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~ 186 (264)
++ +++++++++.+.++|.|++|+++.+|.++++.....++...++..|.++..++++|++++|++++++++|.+++++.
T Consensus 80 ~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 80 PK-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred cc-ccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 95 89999999999999999999999999999998765444456777778888999999999999999999999999866
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCccccC-CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccc-ccceeeeeccc
Q 024688 187 LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGH-LEMNRIQTFSR 263 (264)
Q Consensus 187 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~-~~m~~~~~~~~ 263 (264)
+.++++.+.........+ +.+.+... ++..++++++.++|+++||| ||.++|++++|||+|++ +|++|+...++
T Consensus 159 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~ 235 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGE---PSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISM 235 (409)
T ss_pred ceeeeeecceeeeeeccc---ccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehh
Confidence 543222222222222111 11111111 12334568999999999999 99999999999999998 78889888775
No 4
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.98 E-value=7.5e-32 Score=243.76 Aligned_cols=217 Identities=16% Similarity=0.213 Sum_probs=181.3
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc-cccCcccccHHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAADV 104 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~-~~~~~~~~sy~~l~~~~ 104 (264)
++..|..++..|+.|.++|+|+|+||+||+++||+.|.+..++++++++|+.+.+++|.++. .+.+....+|.+.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999884 22333457999998765
Q ss_pred h----------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcch
Q 024688 105 L----------GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS 174 (264)
Q Consensus 105 ~----------G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~ 174 (264)
+ |+ ++|.++++++++.++|.|++|++++++.++++.+... +...+.+.|+.+..++.+|++++||++.
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-~~~~s~~~~i~~~~~~~lll~~Ir~Lk~ 201 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-PGVLSVRLYILIQLPPLLLLNLIRNLKI 201 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-CCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4 56 7999999999999999999999999999999998322 3457788889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccc
Q 024688 175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGH 252 (264)
Q Consensus 175 l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~ 252 (264)
|+.+|++++++.++...++....+.+.+ +..+.+... ++.++...+|+.+||| +++++.|++++||+|++
T Consensus 202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~----~~~~~~~~~----~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~ 272 (449)
T KOG1304|consen 202 LSPFSLFANVFILVGLAIIMYYLVQDLP----PTSDLPAVT----GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK 272 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC----Ccccccccc----chhhhHHHHHHHHHHhccceEEEehhhcccChhh
Confidence 9999999999777666655555444432 112222221 1337899999999999 99999999999999974
No 5
>PLN03074 auxin influx permease; Provisional
Probab=99.97 E-value=5.8e-29 Score=231.58 Aligned_cols=215 Identities=19% Similarity=0.265 Sum_probs=169.7
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc----cccCc--c--ccc
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC----EKAGR--R--HIR 96 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~----~~~~~--~--~~s 96 (264)
.+++++..++.+|+++..+|.|+|+||+||+++||++|++.++++++++.||.++|.+++.++ +.++. + ..+
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999875442 11111 1 137
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhh
Q 024688 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR 176 (264)
Q Consensus 97 y~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~ 176 (264)
|.|+++..+|| +++.+..+...+++++.|+.|++..++.+..+ +...+.+.|++++.++.+|++++|++++++
T Consensus 122 ~~e~~~~~~G~-~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l------~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~ 194 (473)
T PLN03074 122 WFEVLDGLLGP-YWKNVGLAFNCTFLLFGSVIQLIACASNIYYI------NDNLDKRTWTYIFGACCATTVFIPSFHNYR 194 (473)
T ss_pred HHHHHHHhcCh-hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh------CCCcCCCeEEeehHHHHHHHHHccCHHHHH
Confidence 89999999999 47799999999999999999999888776654 123455667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccc
Q 024688 177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHL 253 (264)
Q Consensus 177 ~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~ 253 (264)
++|.+|+.+++++.+.+++..+.++.+ +..+.+ ...+....+.++++++|+| +|..+|+|++|||||++.
T Consensus 195 ~~S~ig~~~tl~~av~i~i~~i~~~~~---~~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F 265 (473)
T PLN03074 195 IWSFLGLLMTTYTAWYMTIAALSHGQV---EGVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF 265 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcc
Confidence 999999987666544444444433321 111111 1123446788899999999 999999999999999753
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.96 E-value=2e-30 Score=236.03 Aligned_cols=226 Identities=21% Similarity=0.320 Sum_probs=184.2
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
+++.|..++++|+.|+++|+|+|++|+||++.|++.|+++++++++++.+|.+++.++.++ .+.+ +|+++++..+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~---~~~~--ty~~l~~~~~ 77 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK---SGER--TYSSLGDLIF 77 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh---cCCC--CHHHHHHHHc
Confidence 4566899999999999999999999999999999999999999999999999999999997 5555 9999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc-cCCC-C---chhhH-HHHHHHHHHHHHhcCCCcchhhHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL-YPNG-S---LKLYE-FIAMVTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~-~~~~-~---~~~~~-~~~i~~~i~~pls~~r~l~~l~~~S 179 (264)
|+ .|+....+++.....| |++|+++++|.++.+.... .+++ . .++.. ++++...+++||++.|++++++++|
T Consensus 78 g~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS 155 (411)
T KOG1305|consen 78 GK-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTS 155 (411)
T ss_pred CC-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 99 4877777888877777 8999999999999765442 1111 1 23333 4677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceee
Q 024688 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRI 258 (264)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~ 258 (264)
.+++.+.+.+++++++..+.... ..++..+.. ++...+++.+.++|+++||| ||.|..++++|||||+.++|+++
T Consensus 156 ~~s~~~~~~fv~~vv~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v 231 (411)
T KOG1305|consen 156 ALSLASVVYFVVLVVYKYFQGPC--ALGRLSYLV--PNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--ccCCccccc--CCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence 99999888777777776665332 111112222 12222357999999999999 99999999999999999999998
Q ss_pred eecc
Q 024688 259 QTFS 262 (264)
Q Consensus 259 ~~~~ 262 (264)
.+.+
T Consensus 232 ~~~~ 235 (411)
T KOG1305|consen 232 SNIA 235 (411)
T ss_pred HHHH
Confidence 8765
No 7
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.95 E-value=1.4e-26 Score=212.69 Aligned_cols=228 Identities=18% Similarity=0.144 Sum_probs=183.6
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
.+.+.+..++++++.++++|+|+|+||++++..|+.++++++++.+..+++|.+++.|+..+.+ .++.+|.+++++.
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~---~~~~~~~~~~~~~ 81 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSP---NGKASITSLVEDY 81 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcccHHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999999842 2224999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 024688 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~ 184 (264)
+||+ ++++.++++.+.+++.+.+|.+..+|.+++.+......++..+..+.+++.+++.++++.++...++..|.+...
T Consensus 82 ~G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 82 LGKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred hCcc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 9996 779999999999999999999999999999987532122256666778888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCccccCCc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 185 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
.....++...+..... + .......... ...+..+..++|++.||| ||+|+|++++|||++++++.+|+.+.+
T Consensus 161 ~v~~~~~l~~~~~~~~----~--~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~ 234 (415)
T COG0814 161 KVIYLVLLVVYLIPHW----N--PANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG 234 (415)
T ss_pred HHHHHHHHHHHHhccc----C--HHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence 6655444433322111 1 0011111011 133447899999999999 999999999999999887788876544
No 8
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.94 E-value=2.5e-27 Score=204.79 Aligned_cols=219 Identities=16% Similarity=0.200 Sum_probs=186.7
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCc---ccccHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGR---RHIRFRELAA 102 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~---~~~sy~~l~~ 102 (264)
+.+.+-++|.+|..|.+-|.-|++||+|..+.|| +++..|+.++.+|+||+.+|++|..+..+.|. .+.||.+++.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 4567899999999999999999999999999998 89999999999999999999999887433332 2579999999
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~ 182 (264)
..++++.|.+.+.+.+.+.+..+|+.|++..+|.+...++. .+....-|+++....++|.+++|+++..+.+|+.+
T Consensus 193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~----~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c 268 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG----LSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC 268 (524)
T ss_pred HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC----CCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999899999999999999999999999999887753 35667778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688 183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM 255 (264)
Q Consensus 183 ~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m 255 (264)
.++-++.-.+++.++....-++.+..+++++. ...++.++|++.|+| .|..+|++...|++|++.++
T Consensus 269 t~sH~viN~i~v~YCLs~~~dW~wskv~Fsid------i~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~ 336 (524)
T KOG4303|consen 269 TISHLVINLIMVLYCLSFVSDWSWSKVTFSID------INTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNV 336 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccceeEEEEEE------cccCceEEEEEEEeeeceeeccccccccCChhHhee
Confidence 99888887788888776654333333333321 125678999999999 99999999999999997653
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.79 E-value=7.8e-18 Score=153.42 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=156.5
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
+++++.+++++.+..+.+|+|+|+||.+.+++|+++++++++++++++.||..++.|+..+.+ +..++..++|+.+
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~----~g~~~~tma~~~L 83 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR----IGSSFDTITKDLL 83 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHc
Confidence 567789999999999999999999999999999999999999999999999999999987632 2459999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcC--CCcchhhHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSL 183 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~--r~l~~l~~~S~~~~ 183 (264)
||+ |+.+..++..+..|+.+++|+--.|+.+++.+... +.+.+...-.+++.++.-.+.+. |..+++...-+.+.
T Consensus 84 G~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 84 GKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK 160 (414)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 995 88999999999999999999999999999988642 11223333334444444444432 33444444434444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
+..++. .+..... ..+.. .-.+........+..+..++|++.+|| .|+++|++.+++++. .|+.||+..++
T Consensus 161 i~~f~~---~~~~l~~-~i~~~---~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d-~~kir~~I~iG 232 (414)
T PRK10483 161 VITFFL---TFGSLLG-HVQPA---TLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD-PKTIVKCLVYG 232 (414)
T ss_pred HHHHHH---HHHHHHh-hcCHH---HHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC-HHHHHHHHHHH
Confidence 322221 1111111 11100 000000011111224779999999999 999999999998764 34777776543
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.78 E-value=1.2e-17 Score=152.03 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=151.2
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
++|++.+++++.+..+.+|+|+|+||.+.+++|+.+++++++++++++.||+.++.|+..+.+ +..++..++|+.+
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~----~g~~l~tma~~~L 81 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP----VGSSFNTITKDLI 81 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHc
Confidence 455588999999999999999999999999999999999999999999999999999988732 3459999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcC--CCcchhhHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSL 183 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~--r~l~~l~~~S~~~~ 183 (264)
||+ |+.+..++..+..|+.+++|+--.|+.+++.+.... +-+.+...-.+++.++.-++.+. |..+++...-+.+.
T Consensus 82 G~~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 82 GNT-WNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLK 159 (415)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 995 999999999999999999999999999999886411 11222222234444444444333 33444444333333
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcc-ccC---Cc-hhh-hhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688 184 LLSLGYSFLVVGACINAGFSKNAPPKDYS-LES---SK-SAR-IFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN 256 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~---~~-~~~-~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~ 256 (264)
+..++. .+..... +.+.+ +.. .. ... ...+..++|++.+|| .|+++|++.+.+++. .|+.|
T Consensus 160 ii~f~~---~~~~l~~--------~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d-~~~~~ 227 (415)
T PRK09664 160 IISFVI---VFGSFFF--------QVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR-KDKLI 227 (415)
T ss_pred HHHHHH---HHHHHhh--------cccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc-HHHHH
Confidence 322211 1111111 11111 110 00 001 124778999999999 999999999998754 34555
Q ss_pred eee
Q 024688 257 RIQ 259 (264)
Q Consensus 257 ~~~ 259 (264)
|+.
T Consensus 228 kaI 230 (415)
T PRK09664 228 KSV 230 (415)
T ss_pred HHH
Confidence 543
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.75 E-value=8.1e-17 Score=147.19 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=152.5
Q ss_pred CCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCC
Q 024688 28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS 107 (264)
Q Consensus 28 ~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~ 107 (264)
+.+.+++++.+..+.+|+|+|+||.+.+.+|..++++++++.+.++++|..++.|...+.+ +..+|.+++++.+||
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~----~~~~~~~~a~~~lG~ 77 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP----EGSSLTSMAEKYLGK 77 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHhCh
Confidence 4578999999999999999999999999999999999999999999999999999987632 245999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 024688 108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL 187 (264)
Q Consensus 108 ~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~ 187 (264)
+ |+++..++..+..++.+++|..-.++.+++.+..... .+.+...-.+++.++.-.+... .-+...+++..-+...+
T Consensus 78 ~-g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 78 K-GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 5 8899999999999999999999999999998875431 1222222223333332222222 22234444333332121
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688 188 GYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF 261 (264)
Q Consensus 188 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~ 261 (264)
......+...+.+- +.+ ......+...++...+.++|+..+|| .|+++|++.+.+++. +|+.||+..+
T Consensus 155 ~~~~~l~~~~~p~~---~~~--~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d-~~k~~~ai~~ 223 (394)
T PF03222_consen 155 ISFIILVVYLIPHW---NPS--NLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD-PKKIRKAIII 223 (394)
T ss_pred HHHHHHHHHHhhhc---CHH--HhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc-HHHHHHHHHH
Confidence 11111111111111 100 00011111223346789999999999 999999999999864 5677777654
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.75 E-value=1.1e-16 Score=146.29 Aligned_cols=216 Identities=17% Similarity=0.141 Sum_probs=149.1
Q ss_pred chHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCch
Q 024688 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW 109 (264)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 109 (264)
+.+++++.+..+.+|+|+|+||.+...+|++++++++++++.++.|+.+++.|+..+. .+..++.+++++.+||+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~----~~~~~~~~~a~~~LG~~- 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV----PADTGLGTLAKRYLGRY- 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCCHHHHHHHHhChH-
Confidence 6889999999999999999999999999999999999999999999999999976652 12459999999999996
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 024688 110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY 189 (264)
Q Consensus 110 g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~ 189 (264)
|+++..++..+..|..+.+|..-.|+.+.+.++.+-.+ +.+.....+++.++.-...+. ..+...+++.+=+...+..
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998887653211 223333334444333223322 2233444433222211111
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 190 SFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 190 ~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
.+......+.+ .+.+ +...+. +...+..++|++.+|| .|+++|++.+.+++ ++++.||+..++
T Consensus 157 ~~~~~~~l~p~--------~~~~~L~~~~~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~-~~~~~~k~i~~G 221 (403)
T PRK15132 157 LVVMLALMMPH--------IHKVNLLTLPL-QQGLALSAIPVIFTSFGFHGSVPSIVSYMGG-NIRKLRWVFIIG 221 (403)
T ss_pred HHHHHHHHHHh--------cCHHHHhcCCc-cccHHHHHHHHHHHHhhCCcccHHHHHHhCc-CHHHHHHHHHHH
Confidence 11111111111 1111 111010 0013789999999999 99999999999976 456777776543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.73 E-value=6.6e-17 Score=147.36 Aligned_cols=216 Identities=13% Similarity=0.088 Sum_probs=156.7
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHH
Q 024688 34 AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYF 113 (264)
Q Consensus 34 a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~ 113 (264)
++..++++++|+|++++|.++++.|+.++.+.+++.++++.++..++.|...+.| + ..+|.+.+++.+|| +++++
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p--~--~~~~~~~~~~~~G~-~~g~~ 76 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP--G--GASFNTIAKDLLGK-TGNII 76 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C--CCCHHHHHHHHhCH-HHHHH
Confidence 4456789999999999999999999999999999999999999999999987642 2 34999999999999 68899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 024688 114 VIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193 (264)
Q Consensus 114 ~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~i 193 (264)
+.+...+.++..+.+|.+..++.+..++..+... ........+++.+++.++.. +..+..++++.+.+...+...++.
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ 154 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF-PWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALV 154 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887642211 12333333444445555544 456788888877776554443333
Q ss_pred HHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 194 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
++....+...++ ......+...+.++..+++.+.++| +|.+++++.+|++|| +|+++|+..++
T Consensus 155 ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g 218 (381)
T TIGR00837 155 FSGLLPHVKGDL-----LLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIG 218 (381)
T ss_pred HHHHHhhccHHH-----HhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHH
Confidence 333332211001 0000010112336789999999999 999999999999887 67888887654
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.61 E-value=6.5e-14 Score=128.09 Aligned_cols=222 Identities=10% Similarity=0.006 Sum_probs=142.1
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHH
Q 024688 35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV 114 (264)
Q Consensus 35 ~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~ 114 (264)
...+..+.+|+|+|+||-.....|..++++++++.+.+++|+...|.|...+. .++..+|.+++++.+||+ |+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~---~~~~~~i~~v~~~~lG~~-g~~i~ 100 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG---SNPSGNITETVEEHFGKT-GGVVI 100 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCCCCHHHHHHHHcChh-HHHHH
Confidence 38899999999999999999999999999999999999999999999987652 123459999999999997 66999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 024688 115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV 194 (264)
Q Consensus 115 ~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii 194 (264)
.++.++..+..+.+|...+.+.++..+.+.-......+....+++.+++.......+ +..-+++.+=+...+...+...
T Consensus 101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~~~i~~l~~l~ 179 (443)
T PRK13629 101 TFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYLVWPFIASLVLIS 179 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888777654332111123344444444444444433322 3333333322221111111111
Q ss_pred HHHHhcCCCCCCCCCCccc-cCC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccc-------c--cccceeeeec
Q 024688 195 GACINAGFSKNAPPKDYSL-ESS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDI-------G--HLEMNRIQTF 261 (264)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p-------~--~~~m~~~~~~ 261 (264)
...+.+-..++..+.+.+. ... .......+..++|++.||| .|+++|++...+|+. + +++.+|+.+.
T Consensus 180 ~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~ 258 (443)
T PRK13629 180 LSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISR 258 (443)
T ss_pred HHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 1111111000000000000 000 0011124788999999999 999999999995443 3 4666666544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.53 E-value=9.6e-13 Score=120.40 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=141.9
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHH
Q 024688 35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV 114 (264)
Q Consensus 35 ~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~ 114 (264)
.+.+..+++|+|+|+||....+.||...++..++...+++++..++.|..... ..+..++.|++++.|||+ +..+.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~---~~p~~~i~~~~~~~fGk~-~G~ii 84 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS---KNPCEDITEVVEEHFGKN-WGILI 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHcCHH-HHHHH
Confidence 57889999999999999999999999999999999999999999999985542 122459999999999995 66999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhc-ccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 024688 115 IFIQTAINTGVGIGAILLAGECLQIMYSD-LYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193 (264)
Q Consensus 115 ~i~i~~~~~g~~i~y~i~~~~~l~~~~~~-~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~i 193 (264)
.++..+..+..+.+|....++.+...+.. +..+.+. +....+++.+++... .....+.+.+++.+-+...++..+..
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~-~~i~~lilv~il~~i-v~~G~~~i~r~~~il~~~~ii~l~~l 162 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPL-RGLLSLALILILVAI-MSFGEKLLFKIMGPLVFPLVLILVLL 162 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887654 2222221 111122222222222 23355666666655553232222222
Q ss_pred HHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHH----Hhccccc--cccceeeeec
Q 024688 194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQ----LQFLDIG--HLEMNRIQTF 261 (264)
Q Consensus 194 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~----~~m~~p~--~~~m~~~~~~ 261 (264)
....+.+. +. ......++....+.++..+++...+|| +|+++|++. +|.+||+ +|+.+|+.+.
T Consensus 163 ~~~lip~~---~~--~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~ 232 (397)
T TIGR00814 163 SLYLIPHW---NG--ANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKG 232 (397)
T ss_pred HHHHHHHc---CH--HHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 22222211 00 000000011112346889999999999 999999998 3444444 5566665543
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.11 E-value=1.2e-08 Score=94.69 Aligned_cols=224 Identities=10% Similarity=-0.046 Sum_probs=127.4
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
+|+-+.++.+...+++++|+|++.+|..+++.|. .+++..++.+++.......+.|...+.|+.| ..-.-+++.+
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~~~ 79 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEYAF 79 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHHHc
Confidence 5677899999999999999999999999998886 5666666777776777777777665544444 3344456889
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~ 185 (264)
||++| +++.....+.....+.++.+...+.+..++.. . .+......+.++..++..-+ ..+..+....++.+....
T Consensus 80 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-~-~~~~~~~~~~~~~l~~~~~l-n~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 80 GKSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGA-T-LSPVQICLATIGVLWLCTVA-NFGGARITGQISSVTVWG 155 (438)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c-cchHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHH
Confidence 99755 77777665555544444444444454444321 1 11111111111111122222 233455555555444432
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
.+..+++++.........++. ....+..+ .+.+.++..++....|+| |-.....+-+|+|||+| +++|+...+
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~ 229 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLY-VAAWNPHH--LPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER-NVPIAVLGG 229 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccc-cCCcCccC--CchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc-cccHHHHHH
Confidence 222222222222111101110 00111111 111235677788899999 99999999999999964 888876544
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.09 E-value=1.1e-08 Score=95.05 Aligned_cols=223 Identities=9% Similarity=0.007 Sum_probs=125.8
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
+|+-+.++.+...+++++|+|++.+|...++.|.. .++..++.++........+.|...+.|+.|. ..+|. ++ +
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG-~y~y~---~~-~ 77 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGG-PIAYA---GE-I 77 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHHH---HH-H
Confidence 67778999999999999999999999999998853 4555555555666666666676665544432 12333 45 6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~ 185 (264)
|+++| +++........+....++.+...+.+..++.... ++.....+.++...+ +-+...+..+..+.++.+..+.
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~--~~~~~~~~~~~i~~~-~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN--DPIPAGIACIAIVWV-FTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--ChHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 88766 7777665544444444554555555555543221 111111111111111 1112234455555555444432
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
.++.++..+........+++. ..+++... .....++..++....|+| +-......-+|+|||+ |+++|+...+
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~-~~~~~~~~--~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~-r~iPrAi~~~ 227 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATY-AANWNTSD--TTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK-RTVPLATMLG 227 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhh-cccccCCC--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc-ccccHHHHHH
Confidence 222222111111111100000 01111111 122457889999999999 9999999999999995 5888877654
No 18
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.04 E-value=4.1e-08 Score=92.22 Aligned_cols=228 Identities=10% Similarity=0.013 Sum_probs=132.2
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhC-hhHHHHHHHHHHHHHHHHHHHHHHcchhccc-cCcccccHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG-WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAAD 103 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G-~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~-~~~~~~sy~~l~~~ 103 (264)
+|+-+.+++++..+++++|+|++.+|....+.| ....++..++.++..........|...+.|+ .| ..-+-.++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHh
Confidence 577789999999999999999999999987655 2223444556666666666777777666544 33 22334588
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+||++| +++.....+.......++.....+.+..+++.+.++.......+.++..++...+ -.+.++..++++.+..
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l-n~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 82 GFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFL-VLRGVRQAAFINTITT 159 (473)
T ss_pred HcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHH
Confidence 9999766 7777776665555556665555566665554221111111111111111222222 3456677766666655
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccc-CCc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLE-SSK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT 260 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~ 260 (264)
...+..++++++..+.....++. ..+.... .+. ...+..+..++....|+| +-.....+-+|+|| +|+.+|+..
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~--~r~iPrai~ 236 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLDLF-TADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN--KSDVGKATV 236 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCchhc-ccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--cccchHHHH
Confidence 43333322222222211100110 0011100 000 112335778888999999 99999999999999 578888765
Q ss_pred cc
Q 024688 261 FS 262 (264)
Q Consensus 261 ~~ 262 (264)
.+
T Consensus 237 ~~ 238 (473)
T TIGR00905 237 LG 238 (473)
T ss_pred HH
Confidence 54
No 19
>PRK11021 putative transporter; Provisional
Probab=99.03 E-value=3.4e-08 Score=91.04 Aligned_cols=215 Identities=16% Similarity=0.166 Sum_probs=122.6
Q ss_pred chHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCch
Q 024688 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW 109 (264)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 109 (264)
++++++...+++++|+|++.+|....+.+=-.+++..++.+++.......+.|...+.|+.| ..-.-+++.+|+++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~~ 77 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPRL 77 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCchh
Confidence 47889999999999999999998766653235566666677777777777888777755444 33445677899987
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 024688 110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY 189 (264)
Q Consensus 110 g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~ 189 (264)
| +++.............+......+.+..++. ..........++..++.. +--.+..+..++++.+..+..+.
T Consensus 78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~ln~~Gv~~~~~~~~~~~~~~~~- 150 (410)
T PRK11021 78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFG----WSSWQLLLAELLTLALLW-LLNLRGASSSANLQTVIALLIVA- 150 (410)
T ss_pred H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHH-
Confidence 6 6666555443322233333333444444432 111111111111122222 22344556666655543322111
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 190 SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 190 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
++... ...+.. + ..+.+.......++.++..++....|+| +.......-+|+|||+ |+++|+...+
T Consensus 151 --i~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-k~iPrAi~~~ 217 (410)
T PRK11021 151 --LVVAI-WWAGDI-K--PADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE-RDFPRALMIG 217 (410)
T ss_pred --HHHHH-HHHcCC-c--hhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc-ccccHHHHHH
Confidence 11111 111110 1 1111111111123346788999999999 9999999999999996 5888876554
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=99.03 E-value=2.3e-08 Score=92.61 Aligned_cols=223 Identities=10% Similarity=0.063 Sum_probs=135.9
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGL-GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~-G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
+|+-+.++.+...+++++|+|++.+|...... |. .+.+..++.++........+.|...+.|+.| ..-+-.++.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~ 76 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG----SPYTYAYEA 76 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----cceeeHHHH
Confidence 57778999999999999999999999766543 43 3445555566666677777788776654333 223344568
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCc---------hhhHHHHHHHHHHHHHhcCCCcchh
Q 024688 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSL---------KLYEFIAMVTVVMIVLSQLPTFHSL 175 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~---------~~~~~~~i~~~i~~pls~~r~l~~l 175 (264)
+||+.| +++.....+.....+..+....++.+..++.....+.+. ....+..+..++++-+-..+..+..
T Consensus 77 ~G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 77 MGELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 999655 777777777776677777777778777766421111000 0000111222222222234467777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688 176 RHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE 254 (264)
Q Consensus 176 ~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~ 254 (264)
++++.+.....+...++++.........+ +++...+ .....+..++....|+| +.......-+|+|||+ |+
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~-r~ 227 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHFASN-----NYTPFMP--MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE-RD 227 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCcHH-----hcCCCCC--CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc-cc
Confidence 77777666544443333223232221101 1111111 12235788899999999 9999999999999995 57
Q ss_pred ceeeeecc
Q 024688 255 MNRIQTFS 262 (264)
Q Consensus 255 m~~~~~~~ 262 (264)
.+|+...+
T Consensus 228 ip~ai~~~ 235 (429)
T TIGR00909 228 IPKAIILS 235 (429)
T ss_pred ccHHHHHH
Confidence 78776544
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.02 E-value=4.2e-08 Score=91.43 Aligned_cols=222 Identities=10% Similarity=0.010 Sum_probs=125.0
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
+|+-+.++++...+++++|+|++.+|...++.|. ..+...++.++........+.|.....|+.|. ...| +++.+
T Consensus 7 ~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG-~y~~---~~~~~ 81 (445)
T PRK10644 7 AHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGG-SYAY---ARRCF 81 (445)
T ss_pred CCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHH---HHHHc
Confidence 6778899999999999999999999999998874 23444444455555566666776666554442 2244 78889
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHh--cCCCcchhhHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRHINLVSL 183 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls--~~r~l~~l~~~S~~~~ 183 (264)
||.+| +++.....+.......+......+.+..+++.. +.. ....++..+++..++ -.+..+...++..+..
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~ 155 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL--KDP---LVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCc---HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 99766 767766655544444444434444444443321 111 111111122222222 2334566666655554
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
...+..+++.+.........++. ....+..+ ...+..+..++....|+| |-......-+|+|||+| +.+|+...+
T Consensus 156 ~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iPrai~~s 231 (445)
T PRK10644 156 VLALIPIVGIAVFGWFWFRGETY-MAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGG 231 (445)
T ss_pred HHHHHHHHHHHHHHHHHhCchhc-cCCccccc--cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-chhHHHHHH
Confidence 43332222222222111110010 00111111 112235667888899999 99999999999999964 788776544
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.02 E-value=3.5e-08 Score=92.12 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=134.3
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-+.++..+..+++++|+|++.+| .+.+.+|. .+++..++.+++.......+.|.....|+.| .+.+-+++
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G----g~~~~~~~ 84 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG----SFSTYADD 84 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 367778999999999999999999999 66778885 4666777777777777777888776644333 55667789
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+|+.+| +++.....+.....+.+.....++.++..++ + .....+.++..++...+. .+..+..+.+..+..
T Consensus 85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----D--IPLWLFSLILTIVLTLTN-LYSVKSYGEFEFWFA 156 (452)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHHHHH-HHhcchhhHHHHHHH
Confidence 9999655 7888777766666666666666666665432 2 122222222222222222 234555555554433
Q ss_pred HHHHHHHHHHHHHH---HhcCCCCCCCCCCcc-cc---CCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688 184 LLSLGYSFLVVGAC---INAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM 255 (264)
Q Consensus 184 ~~~~~~~~~ii~~~---~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m 255 (264)
+..+..++..++.. .....+... ..++. .. +.....+.++..++....|+| +-.....+-+|+|||++ +.
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r-~i 234 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSE-VSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK-SI 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh-HH
Confidence 32222221111111 111111000 00010 10 100112235889999999999 99999999999999964 78
Q ss_pred eeeee
Q 024688 256 NRIQT 260 (264)
Q Consensus 256 ~~~~~ 260 (264)
+|+..
T Consensus 235 PrAi~ 239 (452)
T TIGR01773 235 TRATN 239 (452)
T ss_pred HHHHH
Confidence 87754
No 23
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.97 E-value=1.3e-07 Score=88.86 Aligned_cols=223 Identities=14% Similarity=0.160 Sum_probs=128.4
Q ss_pred eeccCCchHHHHHHHHhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (264)
..+|+-+.++.....+++++|+|++-.|. +++++|. ..++..++.+++......-+.|..... +. ..++.+.++
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~--~~--~~~~~~ya~ 91 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN--LE--YKSFSDFAS 91 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc--CC--CCcHHHHHH
Confidence 35788899999999999999999999866 7778886 445555566666666665566654321 11 226677899
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~ 182 (264)
+.+|+.+| +++.....+.......+.....+..+...+ |+ .....+.++..+++..+.+ +..+..+.++.+.
T Consensus 92 ~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~----p~--~~~~~~~~~~~~~~~~iN~-~g~~~~~~i~~~~ 163 (469)
T PRK11049 92 DLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWF----PD--LSDWVASLAVVLLLLSLNL-ATVKMFGEMEFWF 163 (469)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 99999655 888887776654444444555555554433 22 1222222222233333332 3456666665544
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCC-CCCCCCcc-ccCC-c--hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccc
Q 024688 183 LLLSLGYSFLVVGACIN---AGFSK-NAPPKDYS-LESS-K--SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHL 253 (264)
Q Consensus 183 ~~~~~~~~~~ii~~~~~---~~~~~-~~~~~~~~-~~~~-~--~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~ 253 (264)
....+..++.+++..+. .+..+ +.....+. ..+. + ...+..++.++....|+| |-......-+|+|||+ |
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~-r 242 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE-K 242 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh-h
Confidence 43332222222222111 11100 00000010 0000 0 112235788999999999 9999999999999996 4
Q ss_pred cceeeee
Q 024688 254 EMNRIQT 260 (264)
Q Consensus 254 ~m~~~~~ 260 (264)
+++|+..
T Consensus 243 ~iPrai~ 249 (469)
T PRK11049 243 SLPRAIN 249 (469)
T ss_pred HHHHHHH
Confidence 7777653
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.96 E-value=1.2e-07 Score=89.04 Aligned_cols=225 Identities=11% Similarity=0.075 Sum_probs=125.5
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~-~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-+.++.....++.++|+|++..|... +.+|-...++..++.+++......-+.|.....|+.| .+-.-+++
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~ 87 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR 87 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 478888999999999999999999888775 5667544455666677777777777788776655444 44456677
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+|+.+| +++.....+.....+.......+..+... .|+ .....+.++..+++..+. .+..+..+.++....
T Consensus 88 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~p~--~~~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 88 YLGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYW----FPQ--VPVWPWCLLFCALIFGLN-VVSTRFFAEGEFWFS 159 (471)
T ss_pred hcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCc--CcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 8999766 66766665554444433333333333222 222 122222233333333332 234555554443332
Q ss_pred HHHHHHHHHHHHHHH---hc-CCC-CCCCCC---CccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688 184 LLSLGYSFLVVGACI---NA-GFS-KNAPPK---DYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE 254 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~---~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~ 254 (264)
..-++.++..++..+ .. ... ++.+.. +++..+.......++..++....|+| |-......-+|+|||+ |+
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~-r~ 238 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA-KV 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh-hH
Confidence 222222111111111 10 000 000000 11111110112235677888889999 9999999999999996 48
Q ss_pred ceeeeecc
Q 024688 255 MNRIQTFS 262 (264)
Q Consensus 255 m~~~~~~~ 262 (264)
++|+...+
T Consensus 239 iPrAi~~~ 246 (471)
T PRK11387 239 IPVAIRTT 246 (471)
T ss_pred HHHHHHHH
Confidence 88876543
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.91 E-value=1.5e-07 Score=88.01 Aligned_cols=220 Identities=12% Similarity=0.089 Sum_probs=130.9
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGL-GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~-G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-+.++..+.-+++++|+|++..|....+. |- ..++..++.+++.+....-+.|.....|..| ++-+-+++
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~~ 84 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAYK 84 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 477888999999999999999998888766654 53 4455556666666666666777766654443 44555677
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+||. ..+++.....+.....+.+.....++.++... |+ .....+.+++.++..-+.+ +..+.++.++.+..
T Consensus 85 ~~g~~-~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~----p~--~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~ 156 (456)
T PRK10238 85 YWGSF-AGFASGWNYWVLYVLVAMAELTAVGKYIQFWY----PE--IPTWVSAAVFFVVINAINL-TNVKVFGEMEFWFA 156 (456)
T ss_pred HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 89995 44888888877777777777766677665543 22 2233333333333333332 24455555554443
Q ss_pred HHHHHHHHHHHHHHH---hcCCCCCCCCCCc----cccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688 184 LLSLGYSFLVVGACI---NAGFSKNAPPKDY----SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM 255 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m 255 (264)
+..+..++++++..+ ..+.. . +.... +..+.....+..+..+++...|+| |-......-+|+|||+ |++
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~-r~i 233 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNG-G-PQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE-QSI 233 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-C-CCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh-hHH
Confidence 333322222111111 11111 0 11011 101110112235667888899999 9999999999999996 478
Q ss_pred eeeee
Q 024688 256 NRIQT 260 (264)
Q Consensus 256 ~~~~~ 260 (264)
+|+..
T Consensus 234 PrAi~ 238 (456)
T PRK10238 234 PKATN 238 (456)
T ss_pred HHHHH
Confidence 88764
No 26
>PRK10249 phenylalanine transporter; Provisional
Probab=98.91 E-value=1.7e-07 Score=87.68 Aligned_cols=223 Identities=12% Similarity=0.088 Sum_probs=130.7
Q ss_pred eeccCCchHHHHHHHHhhhhhhhhhhHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~-~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (264)
..+|+-+.++..+..++.++|+|++..|-... .+|. ..++..++.+++......-+.|...+.|..| ++..-++
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G----g~~~y~~ 92 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG----SFAHFAY 92 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHH
Confidence 46777789999999999999999999887655 4465 4666667777777777888888777655444 5556778
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~ 182 (264)
+.+|+.+| +++.....+.......+.....+..++.+. ++ .....+.++..+++..+. .+..+..+.+....
T Consensus 93 ~~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~ 164 (458)
T PRK10249 93 KYWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWF----PD--VPTWIWAAAFFIIINAVN-LVNVRLYGETEFWF 164 (458)
T ss_pred HHhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----Cc--CcHHHHHHHHHHHHHHHH-HhcchhhhhHHHHH
Confidence 99999666 777776665554444444444445554332 22 222222222323333332 34555555554333
Q ss_pred HHHHHHHHHHHHH--HHH-hcCCCCCCCCCCcc--ccCC--chhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688 183 LLLSLGYSFLVVG--ACI-NAGFSKNAPPKDYS--LESS--KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE 254 (264)
Q Consensus 183 ~~~~~~~~~~ii~--~~~-~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~ 254 (264)
.+.-+..+++.++ ... ..+... +..+.+ .... ....+.++..++....|+| +-......-+|+|||+ |+
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~-k~ 241 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGG--EKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE-KS 241 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--CCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh-hH
Confidence 2222211111111 111 111110 011111 0000 0012335788999999999 9999999999999996 47
Q ss_pred ceeeeecc
Q 024688 255 MNRIQTFS 262 (264)
Q Consensus 255 m~~~~~~~ 262 (264)
++|+...+
T Consensus 242 iPrai~~~ 249 (458)
T PRK10249 242 IPKAVNQV 249 (458)
T ss_pred HHHHHHHH
Confidence 87776543
No 27
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.90 E-value=1.4e-07 Score=90.27 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=133.4
Q ss_pred eeccCCchHHHHHHHHhhhhhhhhhhHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVF--RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~--~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
..+|+-+.++.+..-++.++|+|+..+|... ..+|.. .++..++.++.+........|.....|..|. ...|.
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y~--- 99 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLYS--- 99 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceeeH---
Confidence 4678889999999999999999999999754 347753 4445556666666777777777666555543 23554
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc----cc-C-----CCCchhh-HHHHHHHHHHHHHhcCC
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD----LY-P-----NGSLKLY-EFIAMVTVVMIVLSQLP 170 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~----~~-~-----~~~~~~~-~~~~i~~~i~~pls~~r 170 (264)
++.+|+.+| +++.....+.....+.+.....++.+..++.. +. + ....... ....+..++++-+...+
T Consensus 100 ~~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 346898655 77777766655554444444445555544321 10 0 0111111 11111111122222345
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-cccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcc
Q 024688 171 TFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFL 248 (264)
Q Consensus 171 ~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~ 248 (264)
.++..++++.+..+..+..++++++........++...... +..+.....+.+++.+.....|+| |-..+...-+|.|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 67777777766665444433333333333221111110000 000000112236788999999999 9999999999999
Q ss_pred ccccccceeeeecc
Q 024688 249 DIGHLEMNRIQTFS 262 (264)
Q Consensus 249 ~p~~~~m~~~~~~~ 262 (264)
||+ |+++|+...|
T Consensus 259 nP~-r~iP~aii~s 271 (557)
T TIGR00906 259 NPQ-RAIPIGIVTS 271 (557)
T ss_pred Ccc-ccccHHHHHH
Confidence 996 4888876654
No 28
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.84 E-value=3.4e-07 Score=85.22 Aligned_cols=225 Identities=10% Similarity=0.025 Sum_probs=129.5
Q ss_pred eeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
+.+|+-+.++.....++.++|....+.+.+++..|+..-++..++.++........+.|.....|+.| ..-.-+++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~~~ 79 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFARR 79 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 35777889989888888888855566688889999865445555555555566666777766654433 33445688
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+|+.+| +++.....+.......++....++.+...++. . ....+.++...+...+ -.+..+..++++.+..
T Consensus 80 ~~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~--~~~~~~~~~~~~~~~l-n~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 80 AFGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPV----G--PGWLAALVFYIVFIGI-NILGVGEAAKLEFVVT 151 (442)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C--chhHHHHHHHHHHHHH-HHHHHHHHHhHHHHHH
Confidence 9999655 77777777776667777777777877666532 1 1122222222222222 2234455555554433
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688 184 LLSLGYSFLVVGACINAGFSK-NAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT 260 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~ 260 (264)
+..+..+++.+... ....+. +.-..+.. ..+.....+.+++.++....|+| |.......-+|+|||++ +.+|+..
T Consensus 152 ~~~~~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iprai~ 229 (442)
T TIGR00908 152 AVAIIALGVFIGAM-VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR-DIPRGLI 229 (442)
T ss_pred HHHHHHHHHHHHHH-hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccCHHHH
Confidence 32222211111111 111000 00000000 00011112236778888899999 99999999999999964 7887765
Q ss_pred cc
Q 024688 261 FS 262 (264)
Q Consensus 261 ~~ 262 (264)
.+
T Consensus 230 ~s 231 (442)
T TIGR00908 230 GA 231 (442)
T ss_pred HH
Confidence 43
No 29
>PRK10746 putative transport protein YifK; Provisional
Probab=98.83 E-value=5.5e-07 Score=84.38 Aligned_cols=222 Identities=14% Similarity=0.151 Sum_probs=129.0
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~-~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-+.++..+.-+.+++|+|++..|... +.+|. ..++..++.+++.+....-+.|.....|+.| ++.+-+++
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG----g~~~y~~~ 82 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG----SFAVYAHR 82 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence 477888999999999999999999877654 45565 3455556666666777777777766644333 66777888
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+|+.+| .++.....+.....+.+.+...+..++..+ |+ .....+..+..+++.-+.+ +..+..+.+.....
T Consensus 83 ~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~----p~--~~~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~~ 154 (461)
T PRK10746 83 YMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWF----PE--MAQWIPALIAVALVALANL-AAVRLYGEIEFWFA 154 (461)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CC--CchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 9999766 777777766655555555555555555443 22 2233333333333333322 23444444432222
Q ss_pred HHHH----HHHHHHHHHHHhcCCCCCCCCCCcc-cc---CCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688 184 LLSL----GYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE 254 (264)
Q Consensus 184 ~~~~----~~~~~ii~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~ 254 (264)
..-+ ..+++.+.. ...+...+.+....+ .. +.....+.++..++....|+| +-..+...-+|+|||+ |+
T Consensus 155 ~~ki~~i~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~-k~ 232 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGV-IFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ-VT 232 (461)
T ss_pred HHHHHHHHHHHHHHHHH-HHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh-hH
Confidence 1111 111111111 111111010000010 10 000112346779999999999 9999999999999996 58
Q ss_pred ceeeeec
Q 024688 255 MNRIQTF 261 (264)
Q Consensus 255 m~~~~~~ 261 (264)
++|+.+.
T Consensus 233 iP~Ai~~ 239 (461)
T PRK10746 233 LRSAVGK 239 (461)
T ss_pred HHHHHHH
Confidence 8887653
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.83 E-value=6.1e-07 Score=84.19 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=124.2
Q ss_pred cCCchHHHHHHHHhhhhhhhhhhHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 27 SKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~GiL~LP~a~~-~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
|+-+.++.+...+++++|+|++.+|.... .+|....++..++.++........+.|...+.|+.+.-...| +++.|
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~f 77 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGF 77 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHc
Confidence 34568899999999999999999998765 445333444456666666666777777766644322112244 78899
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHH-HHHHHHHHhcCCCcchhhHHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLL 184 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~i~~pls~~r~l~~l~~~S~~~~~ 184 (264)
|+.+| +++.....+.......++.....+.+...++.+. ...+...+.+. ..+..+-....+..+..++++.+..+
T Consensus 78 G~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 78 GPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG--GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99655 7777776665555555555555555544433221 11111111111 11111222223566666666665554
Q ss_pred HHHHHHHHHHHHHH--hcCCCCCCCCCCcc-cc-CC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceee
Q 024688 185 LSLGYSFLVVGACI--NAGFSKNAPPKDYS-LE-SS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRI 258 (264)
Q Consensus 185 ~~~~~~~~ii~~~~--~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~ 258 (264)
..+..+++.++... ..+. .......+ .. +. ....+..+..++....|+| +-.....+-+|.|| +|+++|+
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~--~k~ip~a 230 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGD--TFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK--RSDVGKA 230 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHh--hcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC--cccchHH
Confidence 33322222222111 1110 00000000 00 00 0111234667888999999 99888888888887 5788888
Q ss_pred eecc
Q 024688 259 QTFS 262 (264)
Q Consensus 259 ~~~~ 262 (264)
...+
T Consensus 231 i~~~ 234 (468)
T TIGR03810 231 TVIG 234 (468)
T ss_pred HHHH
Confidence 7554
No 31
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.83 E-value=5.2e-08 Score=79.84 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=137.5
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchh--------------ccc----c----
Q 024688 33 HAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH--------------CEK----A---- 90 (264)
Q Consensus 33 ~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~--------------~~~----~---- 90 (264)
-....+.|-++|+|-|+||.+|+.+||.+++.++++.++.++.+.....++... +++ .
T Consensus 16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd 95 (319)
T KOG3832|consen 16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASD 95 (319)
T ss_pred hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCC
Confidence 455678889999999999999999999999999999999998887776554211 000 0
Q ss_pred -------C-----c------------------ccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 024688 91 -------G-----R------------------RHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIM 140 (264)
Q Consensus 91 -------~-----~------------------~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~ 140 (264)
+ + +++...+++...|.| .|--+..+++.+++||-...|--.+-.++.++
T Consensus 96 ~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 96 DDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred CcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 0 0 012456677777888 79899999999999999999988877666665
Q ss_pred hhc-cc---------C---C----C-C-ch----hhHHHHHHHHH-HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 024688 141 YSD-LY---------P---N----G-S-LK----LYEFIAMVTVV-MIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGA 196 (264)
Q Consensus 141 ~~~-~~---------~---~----~-~-~~----~~~~~~i~~~i-~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~ 196 (264)
... .+ | | + + ++ .+.|++|+.++ .+|+.+. ++++-++..++..++-..-....+..
T Consensus 175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l 253 (319)
T KOG3832|consen 175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISL 253 (319)
T ss_pred hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhh
Confidence 432 11 1 1 1 1 11 13345555444 4677765 67888888877776554432222222
Q ss_pred HHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccccee
Q 024688 197 CINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNR 257 (264)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~ 257 (264)
.-.+.- .|-....++.-.+-++=.-++...|+| ||...|.....++....-+.+.
T Consensus 254 ~tmqae------edaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~gv~f~c 309 (319)
T KOG3832|consen 254 ATMQAE------EDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKDGVFFKC 309 (319)
T ss_pred hhhhhc------ccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeeccceeEEe
Confidence 222221 121111111111113334577888999 9999999888777655444443
No 32
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.82 E-value=6.5e-08 Score=89.29 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=142.1
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G--~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (264)
.+|+-+.+++++.++++++|+|+...|-...+-+ ..+++++-++.++++..++..-.|.-...|+.|- +|.=+.
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ayi~- 85 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAYIS- 85 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhhHH-
Confidence 4788899999999999999999999999887665 4457777778888888888877776554444443 444444
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~ 181 (264)
++||+.+|.....+......-..+..+-+..++. +++.+. .| +..+....++..+.+..++. .|.-.+++.+.+
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c---~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~v 160 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC---DVPRVASKLLAAALLVLLTL-INSFSVKWATRV 160 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC---CCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHH
Confidence 4688767866666666666666667777777776 666654 22 22222223334444444443 245555555544
Q ss_pred HHH---HHHHHHHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688 182 SLL---LSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN 256 (264)
Q Consensus 182 ~~~---~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~ 256 (264)
=.+ .-++.+.++++..+......+..+.+.+ ..++ +.+..++..++=.-.|+| +-.++=.+-+|+|||. |+++
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~-~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~-ktLP 238 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGS-DTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR-RTLP 238 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccccccC-cCchHHHHHHHHHhhhcccCchhhccchHhhcCcc-ccch
Confidence 333 3333444444444332211110011111 2222 122235778888999999 9999999999999995 5999
Q ss_pred eeeeccc
Q 024688 257 RIQTFSR 263 (264)
Q Consensus 257 ~~~~~~~ 263 (264)
|+.-.|+
T Consensus 239 ~Ai~isi 245 (479)
T KOG1287|consen 239 RAILISI 245 (479)
T ss_pred HHHHHhh
Confidence 8876554
No 33
>PRK10836 lysine transporter; Provisional
Probab=98.82 E-value=5.8e-07 Score=84.84 Aligned_cols=224 Identities=13% Similarity=0.169 Sum_probs=119.7
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-+.++.....+++++|+|++.+|. +.+.+|....++..++.+++....+.-+.|...+.|+.| ..-.-+++
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y~y~~~ 88 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFATYGQN 88 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHH
Confidence 4788899999999999999999999996 666778644677777788888888888888877765544 44445566
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~ 182 (264)
.+|+.+| .++.....+. +..+.+.-....+. +... .++. ....+..+..+++.-+.+ +..+..+.+....
T Consensus 89 ~~g~~~g-f~~Gw~~~~~-~~~~~a~~~~a~~~~~~~~----~~~~--~~~~~~~~~~~~~~~lN~-~gv~~~~~~~~~~ 159 (489)
T PRK10836 89 YVEEGFG-FALGWNYWYN-WAVTIAVDLVAAQLVMSWW----FPDT--PGWIWSALFLGVIFLLNY-ISVRGFGEAEYWF 159 (489)
T ss_pred HcChHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhhhc----CCCC--chHHHHHHHHHHHHHHHH-HcchhhhhhHHHH
Confidence 7888666 6666554443 22222222222222 2221 1221 122222222222222222 2344443333222
Q ss_pred HHHHHHHHH--HHHHHHHhcC-CCCC--CCCCCccccCCc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688 183 LLLSLGYSF--LVVGACINAG-FSKN--APPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM 255 (264)
Q Consensus 183 ~~~~~~~~~--~ii~~~~~~~-~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m 255 (264)
.+.-+...+ +++......+ ...+ ....+++..+.+ ...+..++.+.....|+| +-......-+|+|||+ |++
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~-r~i 238 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA-KNI 238 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH-HHH
Confidence 211111111 1111111111 0000 000011100001 112234555566667999 9999999999999996 488
Q ss_pred eeeeecc
Q 024688 256 NRIQTFS 262 (264)
Q Consensus 256 ~~~~~~~ 262 (264)
+|+...+
T Consensus 239 PrAi~~~ 245 (489)
T PRK10836 239 PRAVRQV 245 (489)
T ss_pred HHHHHHH
Confidence 8876543
No 34
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.80 E-value=2.6e-07 Score=83.64 Aligned_cols=211 Identities=11% Similarity=0.139 Sum_probs=124.0
Q ss_pred CchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCc
Q 024688 29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (264)
Q Consensus 29 ~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (264)
-|.++.++.++++++|+|++.+|....+.+---+.+..++.+++......++.+..++. ++ + +..+..++.+||.
T Consensus 3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~--p~-~--~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF--PE-K--NFSEILSKYLGKI 77 (359)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC--CC-C--CHHHHHHHHhhHH
Confidence 46788999999999999999999987764433444556667777777788888877763 22 2 8999999999995
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH
Q 024688 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG 188 (264)
Q Consensus 109 ~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~ 188 (264)
+| .+..+....+....+.......++.+....- |+.+ ... ..+..+++.-....+.++....++.+-....+.
T Consensus 78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~tp--~~~-~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~ 150 (359)
T TIGR00912 78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRTP--IIV-IIILIIIVSIYIVRKGIEVLLRTAEILLIIFLI 150 (359)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCC--HHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 45 7777776666666665555566666654321 2222 111 222222222223345677777777666543333
Q ss_pred H-HHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHH-HHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688 189 Y-SFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSI-SIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF 261 (264)
Q Consensus 189 ~-~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~ 261 (264)
. .+++......+ .|.+ ..+--+.+..+...+. +...++| +...+..+..++|||+ +.+|+...
T Consensus 151 ~~~~il~~~~~~~--------~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~ 217 (359)
T TIGR00912 151 LFILVLILLAPKL--------GNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK--KIKKSIIK 217 (359)
T ss_pred HHHHHHHHHhccc--------ccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh--hhHHHHHH
Confidence 2 11121111111 1111 1000011122444333 4778899 8888888888888864 56666543
No 35
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.79 E-value=5.7e-07 Score=84.54 Aligned_cols=224 Identities=10% Similarity=0.030 Sum_probs=130.4
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
+|+-+.++.....++.++|+|++..| .+.+.+|....++..++.+++......-+.|.....|+.+. .|..-+++.
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG---~~~~~~~~~ 77 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG---SFATYASRF 77 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHH
Confidence 35667889999999999999999876 45556664333555666667777777777777666442111 577788899
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 024688 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~ 184 (264)
+|+++| +++.....+.....+.+.....+..+.... + ......|..+..++...+ -.+..+..+.++.+...
T Consensus 78 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~i-n~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 78 VDPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWT----D--KVNPAVWIAIFYVFIVII-NLFGVKGYGEAEFWFSS 149 (478)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C--CCCHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHH
Confidence 999766 788877777666666666666666655332 1 122233333333333333 23455666655544432
Q ss_pred HHHHHHHH--HHHH-HHhcCCCCCCCCCCc----cccC--Cc--hhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccc
Q 024688 185 LSLGYSFL--VVGA-CINAGFSKNAPPKDY----SLES--SK--SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGH 252 (264)
Q Consensus 185 ~~~~~~~~--ii~~-~~~~~~~~~~~~~~~----~~~~--~~--~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~ 252 (264)
.-+..++. ++.. ....+..+. ..... +... +. ...+.++..++....|+| |-......-+|+|||+
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~- 227 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNH-GYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR- 227 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC-CCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh-
Confidence 22211111 1111 111111100 00000 0000 00 112346788999999999 9999999999999996
Q ss_pred ccceeeeecc
Q 024688 253 LEMNRIQTFS 262 (264)
Q Consensus 253 ~~m~~~~~~~ 262 (264)
|+++|+...+
T Consensus 228 r~iPrai~~~ 237 (478)
T TIGR00913 228 KSIPRAAKRT 237 (478)
T ss_pred hHHHHHHHHH
Confidence 4788776543
No 36
>PRK15049 L-asparagine permease; Provisional
Probab=98.76 E-value=1.2e-06 Score=83.02 Aligned_cols=225 Identities=10% Similarity=0.093 Sum_probs=123.5
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-+.++..+..++.++|+|++..|. +++.+|- .+++..++.+++....+.-+.|.....|..| ..-.-+++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG----g~y~y~~~ 100 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG----SFVSYARE 100 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence 5677789999999999999999988887 6677775 4566666677777777777788766654433 55566688
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+|+++| +++.....+.....+..-....+..+... ..+ .....+.+.++..++...+. .+..+....+.....
T Consensus 101 ~~G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~---~~~~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 101 FLGEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF---GGVPQWVFALAALTIVGTMN-MIGVKWFAEMEFWFA 174 (499)
T ss_pred HhCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC---CCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999655 77777665544333333232333332211 111 11222222222333333332 234555555544433
Q ss_pred HHHHHHHHHHHHHH---HhcCCCCCCCCCCccc-c--CC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688 184 LLSLGYSFLVVGAC---INAGFSKNAPPKDYSL-E--SS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM 255 (264)
Q Consensus 184 ~~~~~~~~~ii~~~---~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m 255 (264)
+.-+..++..++.. ...+...+........ . +. ....+..++.++....|+| |-..+...-+|+|||++ ++
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r-~i 253 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT-MV 253 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh-HH
Confidence 22222212111111 1111100000000100 0 00 0112234556677899999 99999999999999964 78
Q ss_pred eeeeec
Q 024688 256 NRIQTF 261 (264)
Q Consensus 256 ~~~~~~ 261 (264)
+|+...
T Consensus 254 PrAi~~ 259 (499)
T PRK15049 254 PKAINS 259 (499)
T ss_pred HHHHHH
Confidence 777653
No 37
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.74 E-value=2.3e-06 Score=80.04 Aligned_cols=222 Identities=13% Similarity=0.112 Sum_probs=125.9
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-+.++..+..+++++|+|++.+|.. .+.+|. ...+..++.+++......-+.|...+.|..| ..-+-+++
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G----g~y~y~~~ 81 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS----SFSRYAQE 81 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 46778899999999999999999999877 455665 4566666777777777777888776654333 33445688
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.+||.+| +++.....+.....+.......+..++..+ ++ .....+.++..++..-+. .+..+....+..+..
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~l~~~ln-~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 82 NLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWF----PT--VPHWIWVLSVVLIICAVN-LMSVKVFGELEFWFS 153 (457)
T ss_pred HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC--CChHHHHHHHHHHHHHHH-HccchhHHHHHHHHH
Confidence 8999655 777776665554444444444444444332 22 122233333333333332 334555555554333
Q ss_pred HHHHHHHHHHHHHH----HhcCCCCCCCC-CCccccC-Cc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688 184 LLSLGYSFLVVGAC----INAGFSKNAPP-KDYSLES-SK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM 255 (264)
Q Consensus 184 ~~~~~~~~~ii~~~----~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m 255 (264)
...+..+++.++.. +......+.+. .+....+ .. ...+.++..++....|+| |-......-+|+|||+ |+.
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~-k~i 232 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE-KSI 232 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-hHH
Confidence 22222111111111 11100000000 0000110 00 112236778899999999 9999999999999997 467
Q ss_pred eeeee
Q 024688 256 NRIQT 260 (264)
Q Consensus 256 ~~~~~ 260 (264)
+|+..
T Consensus 233 PrAi~ 237 (457)
T PRK10580 233 PRAIN 237 (457)
T ss_pred HHHHH
Confidence 77654
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.70 E-value=1.8e-06 Score=81.65 Aligned_cols=228 Identities=10% Similarity=0.043 Sum_probs=123.1
Q ss_pred eeccCCchHHHHHHHHhhhhhhhhhhHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-~~~~G~v-~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
..+|+-+.++.....+++++|+|++..|.. ...+|-. ...+..++.+++.......+.|.....|+.|. .-.-.
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG----~y~~~ 114 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG----EYNYI 114 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----hhhhH
Confidence 357788899999999999999999999876 4556643 22344455666667777777777666554432 22234
Q ss_pred HHHhCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHH-HhhcccCCCCchhhHHHHH---HHHHHHHHhcCCCcchhh
Q 024688 102 ADVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQI-MYSDLYPNGSLKLYEFIAM---VTVVMIVLSQLPTFHSLR 176 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~-~~~g~~i~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~i---~~~i~~pls~~r~l~~l~ 176 (264)
++.+|+.+| ++....... ...+.+..+....++.+.. ++. +.........++ ..++...+ -.+.++...
T Consensus 115 ~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~----~~~~~~~~~~~i~~~~i~~~~~l-n~~Gvk~~~ 188 (501)
T TIGR00911 115 LEVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFP----DCEVPEWAIRLVAVLCVLLLTLV-NCLSVKWAT 188 (501)
T ss_pred HhHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHHHHHHH-HHhhhHHHH
Confidence 568999766 555544332 2223344444444554322 222 111111111111 12222222 234566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688 177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE 254 (264)
Q Consensus 177 ~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~ 254 (264)
+++.+.....+..+++.++..+.....++....+.+ ..........++..++....|+| |-.....+-+|+|||+ |+
T Consensus 189 ~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~-r~ 267 (501)
T TIGR00911 189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY-RT 267 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch-hh
Confidence 666655544433322222222221111110011111 11111112346778899999999 9999999999999996 47
Q ss_pred ceeeeecc
Q 024688 255 MNRIQTFS 262 (264)
Q Consensus 255 m~~~~~~~ 262 (264)
.+|+...+
T Consensus 268 iPrAi~~s 275 (501)
T TIGR00911 268 LPIAIIIS 275 (501)
T ss_pred hHHHHHHH
Confidence 77775543
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.70 E-value=2.1e-06 Score=79.94 Aligned_cols=226 Identities=13% Similarity=0.071 Sum_probs=124.5
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~-~~~G~v-~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (264)
.+|+-+.+++....++.++|+|++..|... ...|-. ..++..++.+++.........|.....|+.|. ...|. +
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y~---~ 81 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVYL---K 81 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceeeH---H
Confidence 478888999999999999999999999874 445633 34444555666666677777776666554443 23554 4
Q ss_pred HHhCCchhHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688 103 DVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~-~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~ 181 (264)
+.+|+.+| +++....+ .........+....++.+.... +........ ..+..+.++-..-.+..+...+++.+
T Consensus 82 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~----~~~~~~~~~-~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 82 NAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLT----PIDPLLGKF-IAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred HhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 67998766 66666533 2233333445555555554332 111111111 11111111111223456656666555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688 182 SLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT 260 (264)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~ 260 (264)
..+..+..++++++..+.....++..+ ...........+..+..++....|+| +-......-+|+|||+ |+++|+..
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~iP~Ai~ 233 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAA-PTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG-KTMPRALI 233 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccC-CCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc-ccchHHHH
Confidence 554333322222222221110111000 00000001111335778889999999 9999999999999996 48888765
Q ss_pred cc
Q 024688 261 FS 262 (264)
Q Consensus 261 ~~ 262 (264)
.+
T Consensus 234 ~~ 235 (445)
T PRK11357 234 GS 235 (445)
T ss_pred HH
Confidence 54
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.69 E-value=4.2e-07 Score=83.96 Aligned_cols=218 Identities=11% Similarity=0.061 Sum_probs=124.1
Q ss_pred chHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcchhccccCcccccHHHHHHHHhCCc
Q 024688 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG 108 (264)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~ 108 (264)
+++++....+++++|+|+...| .....|.. +.+..++.+.+. ........|...+.|+.| ..-.-+++.+||+
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~~ 75 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGPF 75 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhccccc
Confidence 5789999999999999999999 77777753 444444443333 445555556554433333 4556667889997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHH--HHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 024688 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA--MVTVVMIVLSQLPTFHSLRHINLVSLLLS 186 (264)
Q Consensus 109 ~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~--i~~~i~~pls~~r~l~~l~~~S~~~~~~~ 186 (264)
+| +++.....+.....+.++.....+.+...+. ++.........+ +..++..-+...+..|..++++.+.....
T Consensus 76 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 76 WG-FIVGWLYWVAYILSLASVASSFASYLLSLFG---PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT---GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ch-hcccceeEEEeeccccccccchhhhhhhccc---cccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence 66 7777777776666666676666666655442 111111111122 22222222223456777777776666555
Q ss_pred HH-HHHHHHHHHHhcCCCCCCCC--CCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 187 LG-YSFLVVGACINAGFSKNAPP--KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 187 ~~-~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
++ .+++++...+.....+..+. .+.+...+. .+...+.+++...|+| |-.....+-+|+|| |+.+|+...+
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~ 226 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS--GWPGFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS--SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccccccCCc--cccchhhHHHHHHhhcccccccccccccccc---hhheeecccc
Confidence 52 32233333333321111000 000000011 1114678899999999 99999999999887 5777776544
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.62 E-value=3.2e-06 Score=78.93 Aligned_cols=209 Identities=12% Similarity=0.083 Sum_probs=118.3
Q ss_pred HhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHHHHH
Q 024688 39 TTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI 117 (264)
Q Consensus 39 ~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~ 117 (264)
+++++|+|++..|. +.+++|. .+++..++.+++....+..+.|...+.|+.| ..-+-+++.+|+.+| .++...
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G----g~y~y~~~~~G~~~g-f~~gw~ 77 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG----SFSTYADKAIGRWAG-YTIGWL 77 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHcChHHH-HHHHHH
Confidence 56899999999998 7778886 4677777778888888888888776654433 556666789999766 777766
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 024688 118 QTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197 (264)
Q Consensus 118 i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~ 197 (264)
..+.....+.......+..+... .++ .....+.++..+++..+. .+..+..+.+..+..+.-+...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSW----VPG--IPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----ccc--CcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 65554444433333333333222 111 122222222333333333 33455555555444433333222222222
Q ss_pred Hh--cCCCCCCCCCCc-ccc--CC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688 198 IN--AGFSKNAPPKDY-SLE--SS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF 261 (264)
Q Consensus 198 ~~--~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~ 261 (264)
+. .+.....+.... +.. +. ....+.++..++....|+| |-......-+|+|||+ |+++|+.+.
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~-r~iPrai~~ 220 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE-KHIVRATNS 220 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-hhHHHHHHH
Confidence 21 111100000000 000 00 0112336889999999999 9999999999999996 588887543
No 42
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.49 E-value=4.1e-06 Score=84.58 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=136.1
Q ss_pred ccCCchHHHHHHH-Hhhhhhhhhhh-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchh-ccccCcccccHHHHHH
Q 024688 26 ESKGEWWHAGFHL-TTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAA 102 (264)
Q Consensus 26 ~~~~s~~~a~~~l-~~~~iG~GiL~-LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~-~~~~~~~~~sy~~l~~ 102 (264)
.++-+++++++.- +.+++|+|+.- +++...++|...++++.++.++++..+..-+.+.... .++.|- .|. ..+
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yis 150 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LIS 150 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HHH
Confidence 3455688888877 99999999864 5677779998778888888889999998888887765 333332 343 345
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccC---CCCch-hhHHHHHHHHHHHHHhcCCCcchhhHH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP---NGSLK-LYEFIAMVTVVMIVLSQLPTFHSLRHI 178 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~---~~~~~-~~~~~~i~~~i~~pls~~r~l~~l~~~ 178 (264)
+.+|+.+| ..+.++..+.+..++..|.+-.++.+..++...+. ..... ...+.++..+++..++ ...++...++
T Consensus 151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~ 228 (953)
T TIGR00930 151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKA 228 (953)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 67898666 77777777777777888888888888777643211 01111 1222222223333333 3355555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC---cc---ccC---Cchhhhh-hHHHHHHHHHHHh-ccCchHHHHHhc
Q 024688 179 NLVSLLLSLGYSFLVVGACINAGFSKNAPPKD---YS---LES---SKSARIF-SAFTSISIIAAIF-GNGILPEIQLQF 247 (264)
Q Consensus 179 S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~---~~---~~~---~~~~~~~-~~~~~~~~~~faf-~~~~~~~i~~~m 247 (264)
..+..+..++.++.+++..+. ...+. +... ++ +.. +...... .++..++++.+|| |......+-.|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~-~~~~~-~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl 306 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTII-PAFDK-PAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL 306 (953)
T ss_pred HHHHHHHHHHHHHHHHheeee-cCCCC-CccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555444323222222222211 11000 0000 00 000 0000111 2677888888899 999999999999
Q ss_pred cccccccceeeeecc
Q 024688 248 LDIGHLEMNRIQTFS 262 (264)
Q Consensus 248 ~~p~~~~m~~~~~~~ 262 (264)
|||+ |+++|++..+
T Consensus 307 KnP~-r~IPratl~a 320 (953)
T TIGR00930 307 KDPQ-KAIPKGTLLA 320 (953)
T ss_pred cChh-hhhHHHHHHH
Confidence 9997 4777776544
No 43
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.44 E-value=5.4e-05 Score=71.24 Aligned_cols=229 Identities=12% Similarity=0.021 Sum_probs=118.2
Q ss_pred eeccCCchHHHHHHHHhhh-hhhhhhhHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAI-VGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~-iG~GiL~LP~a~~-~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
+.+|+-+.++....-.+.+ +|.|+.++|..-. ..|- ..+...++.++.......-+.|...+.|..|. .-.-+
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG----~Y~~~ 84 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGA----IYQWS 84 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----HHHHH
Confidence 4678888888877666653 7888888776554 5554 34445555566666666677777666554442 23335
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc---cc--CCC--Cch-hhHHHH--HHHHHHHHHhcCCC
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD---LY--PNG--SLK-LYEFIA--MVTVVMIVLSQLPT 171 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~---~~--~~~--~~~-~~~~~~--i~~~i~~pls~~r~ 171 (264)
++.+|+.+| +++.....+.....+.+........+..+... .. ++. ... ...+.+ +..++..-+ -.+.
T Consensus 85 ~~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-n~~g 162 (475)
T TIGR03428 85 RRMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVI-NCIG 162 (475)
T ss_pred HHHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHH-HHhh
Confidence 678898766 77777666655444434333444444333211 11 111 001 111111 111122222 2334
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccc-CCchhh-hhhHHHHHHHHHHHh-ccCchHHHHHhcc
Q 024688 172 FHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLE-SSKSAR-IFSAFTSISIIAAIF-GNGILPEIQLQFL 248 (264)
Q Consensus 172 l~~l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~faf-~~~~~~~i~~~m~ 248 (264)
.|..+++..+..+..+...+++++.......+ + +...++.. ..+.+. ...+..+.....|+| |-.....+-+|+|
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~-~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k 240 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQR-G-PGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK 240 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-cceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence 55566665554443333222222222222111 0 11011100 001111 224556667788999 9999999999999
Q ss_pred ccccccceeeeecc
Q 024688 249 DIGHLEMNRIQTFS 262 (264)
Q Consensus 249 ~p~~~~m~~~~~~~ 262 (264)
||+ |+.+|+...+
T Consensus 241 nP~-r~iPrai~~s 253 (475)
T TIGR03428 241 NPR-RVAPRTILTA 253 (475)
T ss_pred Ccc-hhhhHHHHHH
Confidence 996 4777776543
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.44 E-value=2.4e-05 Score=72.77 Aligned_cols=225 Identities=13% Similarity=0.115 Sum_probs=130.1
Q ss_pred ccCCchHH-HHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 26 ESKGEWWH-AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 26 ~~~~s~~~-a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
+|+-+.++ ......+.++|.|++.+|......+ ....+..++.+++..+......|...+.|+.| .+-+-+++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y~~~~~~ 85 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAYAYAKRA 85 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Ceeeehhhh
Confidence 45555666 8888889999999999999998876 22222233334444444555555555433333 445566789
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccc--CCCCchhhHHHHHHHH--HHHHHhcCCCcchhhHHHH
Q 024688 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY--PNGSLKLYEFIAMVTV--VMIVLSQLPTFHSLRHINL 180 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~--~~~~~~~~~~~~i~~~--i~~pls~~r~l~~l~~~S~ 180 (264)
+|+++| +++.....+.......+.....++.+...+.... .... ..+..+..+ .++-+.-.+..+...++..
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGP---LLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCc---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998766 8888888888888878888887776666654210 0111 222222222 2222223445666666665
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeee
Q 024688 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQ 259 (264)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~ 259 (264)
+..+..+...+++............. ...............+..++....++| |-......-+|+|||++ +.+|+.
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r-~ip~ai 238 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNG--NLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR-TIPRAI 238 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccc--ccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc-cccHHH
Confidence 55554444433333333332211110 011110001111225788999999999 99999999999999865 577765
Q ss_pred ecc
Q 024688 260 TFS 262 (264)
Q Consensus 260 ~~~ 262 (264)
-.+
T Consensus 239 i~~ 241 (466)
T COG0531 239 ILS 241 (466)
T ss_pred HHH
Confidence 443
No 45
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.36 E-value=0.0001 Score=65.73 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=119.0
Q ss_pred CchHHHHHHHHhhhhhhhhhhHHHHHHhh---ChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 29 GEWWHAGFHLTTAIVGPTILTLPYVFRGL---GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 29 ~s~~~a~~~l~~~~iG~GiL~LP~a~~~~---G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
-|..|..+.+..+.+|+|++.+|....+. ||+..+ +.++....-.+++.+..++. + ..|..|..++.+
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~l----l~~~~~l~~~~l~~~l~~~~--p---~~~l~~~~~~~~ 72 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVL----LGGLIGLLLALLIYYLLKRF--P---GKTLVEISEKLF 72 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH----HHHHHHHHHHHHHHHHHHHC--C---CCCHHHHHHHHh
Confidence 35778999999999999999999998776 464332 33333344444555555542 2 239999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~ 185 (264)
||.+| ++..+...++.+......+...+|.++..+- |+.+ .. .+....+++.-....+.++.+...+.+-...
T Consensus 73 Gk~lg-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l---p~TP--~~-~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 73 GKWLG-KIINLLYILYFLLISALVLREFSEFIKTYLL---PETP--IW-VIILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcCC--HH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99555 7777777777777777777777777766532 2221 11 1222233333334456777777765554443
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccc
Q 024688 186 SLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIG 251 (264)
Q Consensus 186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~ 251 (264)
.+...+.+......+ .|++ ..+--+.+..+++.+.....+.| +-..+.-+...+|+|+
T Consensus 146 ~~i~~~~i~~~~~~~--------~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 205 (320)
T PF03845_consen 146 FLILLLLILLLSIPN--------IDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK 205 (320)
T ss_pred HHHHHHHHHHHhccc--------CCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 333322222222211 1221 11111122346777777777888 7777888888888874
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.29 E-value=2.5e-05 Score=73.00 Aligned_cols=223 Identities=11% Similarity=0.113 Sum_probs=151.1
Q ss_pred eccCCchHHHHHHHHhhhhhhhh-hhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTI-LTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
.+|+-...+-.+.-+...+|+|. ++.-.+++++|-...++.-++++...++.+.-|.|.+...|..| +|..-+.+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG----sF~~ya~r 117 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG----SFSTYATR 117 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----chhhhhhh
Confidence 56777777888999999999997 47889999999998999999999999999999999887754332 58887888
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhc--CCCcchhh-HHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFHSLR-HINL 180 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~--~r~l~~l~-~~S~ 180 (264)
.-++.+| ..+...-.++..-++-.-+...+..++... |+. .+...|+.++.++++.+.+ .|-..+.- ++|.
T Consensus 118 fvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~----p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 118 FVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWF----PDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred hcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhc----CCC-CChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 8888777 666666666555555556666655555543 232 6778888888888877765 44454443 4566
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccC---CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLES---SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN 256 (264)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~ 256 (264)
+=++..+.+.++.++. +..+.+++ ......... .-...+.++...+-+..|+| +.-.+----.|-+||+ |.++
T Consensus 192 iKV~~ii~Fii~gii~-~~Gg~~~~-~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~-K~iP 268 (541)
T COG0833 192 IKVLTIIGFIILGIII-ICGGGPTH-GYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR-KSIP 268 (541)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCCC-CCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch-hhhH
Confidence 6665554444333322 11122111 111111111 11223557888888999999 9988888889999995 5777
Q ss_pred eeee
Q 024688 257 RIQT 260 (264)
Q Consensus 257 ~~~~ 260 (264)
|+.|
T Consensus 269 kAik 272 (541)
T COG0833 269 KAIK 272 (541)
T ss_pred HHHH
Confidence 7655
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.10 E-value=0.0003 Score=66.27 Aligned_cols=231 Identities=11% Similarity=-0.014 Sum_probs=113.6
Q ss_pred eccCCchHHHHHHHHhhhhh--hhhh-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVG--PTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG--~GiL-~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
.+|+-+.++....-.. .+| .|+. .++.+.+..|-...++..++.+++......-+.|.....|+.| ..-.-+
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G----g~y~~~ 84 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG----GQYFWS 84 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc----cHHHHH
Confidence 5676677766554444 444 4543 3455677778655556666677777777777788766655444 333334
Q ss_pred HHHhCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCC--CCchhhHHHHHHHHHHHH--HhcCCCcch
Q 024688 102 ADVLGSGWM---FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN--GSLKLYEFIAMVTVVMIV--LSQLPTFHS 174 (264)
Q Consensus 102 ~~~~G~~~g---~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~i~~p--ls~~r~l~~ 174 (264)
++.+|+++| .+++.....+.....+.+.....++.+.......+++ .....+...++..++++. +...+..|.
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence 556664433 2555555555555555555555556555543322222 111111111222211111 112233444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccc---cCCc---hhhhhhHHHHHHHHHHHh-ccCchHHHHHhc
Q 024688 175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSL---ESSK---SARIFSAFTSISIIAAIF-GNGILPEIQLQF 247 (264)
Q Consensus 175 l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m 247 (264)
++....+..+..+...+++++.......++.. +.++.. .+.. .+..+....++....|+| +-......-+|+
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~ 243 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLACKSPKFN-DGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-ChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence 44444433322222222111111111111000 011111 1000 011124555666678999 999999999999
Q ss_pred cccccccceeeeecc
Q 024688 248 LDIGHLEMNRIQTFS 262 (264)
Q Consensus 248 ~~p~~~~m~~~~~~~ 262 (264)
|||+ |+++|+...+
T Consensus 244 knP~-r~iP~Ai~~s 257 (482)
T TIGR00907 244 ENPE-VVGPRAIIGA 257 (482)
T ss_pred CChh-hhcCHHHHHH
Confidence 9995 5888877654
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.01 E-value=0.00097 Score=63.12 Aligned_cols=223 Identities=8% Similarity=0.048 Sum_probs=107.3
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcchhccc-cCcccccHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEK-AGRRHIRFRELAAD 103 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~~~~~-~~~~~~sy~~l~~~ 103 (264)
+|+-++++-+...+++++|.+ .+|.+++..|.. +++..++.+++. .-....+.|.....|+ .| .--.=.++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~~ 78 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMNK 78 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHHH
Confidence 566789999999999999987 679888888863 444444444332 2344445665554432 23 22234467
Q ss_pred HhCCchhHHHHHHHHHHHHHHH---HHH-------HHHHhhhhHHHHhhcccCCCCchhh-HHHHHHHHH--HHHHhcCC
Q 024688 104 VLGSGWMFYFVIFIQTAINTGV---GIG-------AILLAGECLQIMYSDLYPNGSLKLY-EFIAMVTVV--MIVLSQLP 170 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~---~i~-------y~i~~~~~l~~~~~~~~~~~~~~~~-~~~~i~~~i--~~pls~~r 170 (264)
.+|+++|. ++........... ..+ +.++ +....+. ++ ....... ...++..+. ++-+...|
T Consensus 79 ~~G~~~gf-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 79 SVGPKFAF-IGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQT---WH-FLGLNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred HcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhh---hh-hhcccchHHHHHHHHHHHHHHHHHHcc
Confidence 88988874 4333222211111 111 1111 1111000 00 0011111 111111111 22223456
Q ss_pred CcchhhHHHHHHHHHHHHH----HHHHHHHHHhcCCCCCCCC--CCccc-cCCchhhhhhHHHHHHHHHHHh-ccCchHH
Q 024688 171 TFHSLRHINLVSLLLSLGY----SFLVVGACINAGFSKNAPP--KDYSL-ESSKSARIFSAFTSISIIAAIF-GNGILPE 242 (264)
Q Consensus 171 ~l~~l~~~S~~~~~~~~~~----~~~ii~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~faf-~~~~~~~ 242 (264)
.++..++++.++....+.. +++.+......+.+...+. .++.. .++.......+..++....|+| +......
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777776544322221 1111111111111100000 01100 0011101134667788889999 9999999
Q ss_pred HHHhccccccccceeeeecc
Q 024688 243 IQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 243 i~~~m~~p~~~~m~~~~~~~ 262 (264)
.-+|+|||+ |+.+|+...+
T Consensus 233 ~a~E~~~p~-~~~p~ai~~~ 251 (496)
T PRK15238 233 LVDKTENPE-KNFPKGIIIA 251 (496)
T ss_pred HHHhccCCC-ccccHHHHHH
Confidence 999999996 4888876554
No 49
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.96 E-value=0.0015 Score=60.19 Aligned_cols=219 Identities=15% Similarity=0.218 Sum_probs=136.6
Q ss_pred eccCCchHHHHHHHHhhhhhhhh-hhHHHHHHhhChhHHHHH-HHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTI-LTLPYVFRGLGWGLGFTC-LTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~a~~~~G~v~g~i~-l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (264)
.+|+-+..+--+.-+...+|+|. |+--.+.+.+| +++++ -.+.+++...=+..|.|...+. +.+. ||.+.++
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~--p~~g--SF~~~a~ 84 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVAN--PVSG--SFSDYAR 84 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCC--cHHHHHH
Confidence 35777788888999999999996 34556677777 33332 3344555555566666655542 4444 9999999
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHH--HhcCCCcchhh-HHH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIV--LSQLPTFHSLR-HIN 179 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~p--ls~~r~l~~l~-~~S 179 (264)
+.+|+ |..+++...-.+.....+++-+..++..++..+. | ...+.+.++..+++.- |...|...++- |++
T Consensus 85 ~~lG~-~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP----~--vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 85 KYLGP-WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP----D--VPQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred HHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 4559999999999999999999999999888764 2 2344444444433333 33345555544 345
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-cc---CCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE 254 (264)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~ 254 (264)
++=+...+...++.++. +..+.+.+......+ +. +--...+.+++.++-+.+||| +.-.+=.--+|-|||++ .
T Consensus 158 lIKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k-~ 235 (462)
T COG1113 158 LIKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK-A 235 (462)
T ss_pred HHHHHHHHHHHHHHHHH-HhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh-H
Confidence 55554333333332222 111221110001111 11 001123457899999999999 99999999999999973 5
Q ss_pred ceee
Q 024688 255 MNRI 258 (264)
Q Consensus 255 m~~~ 258 (264)
++|+
T Consensus 236 ipkA 239 (462)
T COG1113 236 IPKA 239 (462)
T ss_pred HHHH
Confidence 5554
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.91 E-value=4.6e-05 Score=71.66 Aligned_cols=217 Identities=12% Similarity=0.104 Sum_probs=117.1
Q ss_pred Hhhhhhhhhh-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHHHHH
Q 024688 39 TTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI 117 (264)
Q Consensus 39 ~~~~iG~GiL-~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~ 117 (264)
+..++|+|++ +.+.+..+.|.....+..++.+++......-+.+..++.|+.| ++-..+++.+|+++| ..+.+.
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G----g~y~y~~~~lg~~~G-f~~gw~ 81 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG----GFYAYASRGLGPALG-FAAGWA 81 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc----chhhhhhhccCCcCC-ceeeHH
Confidence 4566776654 4567888888866777777788888888888888877754333 555667788898766 555555
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH--hhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 024688 118 QTAINTGVGIGAILLAGECLQIM--YSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG 195 (264)
Q Consensus 118 i~~~~~g~~i~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~ 195 (264)
..+.............+..++.. .......+.+.. .+..++.+++..+.. ...+..+.+...-....+...+..++
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~ii 159 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFII 159 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhhh
Confidence 44444444444444444444433 111100011111 123333333333332 23444444333322222222222222
Q ss_pred HH-HhcCCCCCCCCC-----Ccc----ccC----CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688 196 AC-INAGFSKNAPPK-----DYS----LES----SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT 260 (264)
Q Consensus 196 ~~-~~~~~~~~~~~~-----~~~----~~~----~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~ 260 (264)
.. +......+..+. +.. .++ ++...+.++..++....++| +-......-+|.|||+ |+++|++.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~-k~IPra~~ 238 (478)
T PF00324_consen 160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR-KTIPRATL 238 (478)
T ss_pred hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch-hhhhhHhh
Confidence 22 111111010001 000 110 01112447899999999999 9999999999999995 58888877
Q ss_pred ccc
Q 024688 261 FSR 263 (264)
Q Consensus 261 ~~~ 263 (264)
.++
T Consensus 239 ~~~ 241 (478)
T PF00324_consen 239 LSV 241 (478)
T ss_pred hhh
Confidence 653
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.88 E-value=0.00094 Score=63.44 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 224 AFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 224 ~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
....+..+.|+| |-......-+|+|||+ |+.+|+...+
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~-r~~PrAi~~~ 234 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPG-RDYPLAMILL 234 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCc-ccccHHHHHH
Confidence 344555568999 9999999999999996 4788776544
No 52
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.73 E-value=0.017 Score=53.88 Aligned_cols=208 Identities=13% Similarity=0.151 Sum_probs=110.3
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchh
Q 024688 31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (264)
Q Consensus 31 ~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (264)
|+++.+|+.+-..|+....+ ..++..+++..++-.++...-..+....-.| . ..++.-+.|..||+ +|
T Consensus 23 W~~~~~~v~~~~~Ga~l~~~-----GLs~~~ailai~lG~~i~~~~~~l~~~~G~r---~---Gl~~~v~sR~~FG~-~G 90 (442)
T TIGR00800 23 WLGAAFNIATWAIGALGLPL-----GLSWWQSVIAIILGNLLGGIFVALNSRAGAK---Y---GLPFPVLSRASFGI-YG 90 (442)
T ss_pred HHHHhhhHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH---h---CCCcchhhhhhhhh-hH
Confidence 55556666666666543221 1333344444333333322222223322222 2 35888899999999 49
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCC-Cc------hhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SL------KLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 111 ~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~------~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
.++..++..+...|=........++.+..++....+.. .. ....+.+++.++.+++....-.+-.++....+.
T Consensus 91 s~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~ 170 (442)
T TIGR00800 91 SLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAV 170 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999888888999988888776643321 01 122223455566666655555555555555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh--ccCchHHHHHhcccccc
Q 024688 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQLQFLDIGH 252 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~m~~p~~ 252 (264)
...+....+.+......+...+. .+.....++....+.+..++....=.+ .-.+.++.-+.+|+|+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~ 239 (442)
T TIGR00800 171 VPPFAAFGMLIWALSKAHGKGPL--GELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKT 239 (442)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcc--ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc
Confidence 43222222222221221100000 000000011222345555655533333 55699999999999764
No 53
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.47 E-value=0.0093 Score=56.11 Aligned_cols=32 Identities=6% Similarity=-0.067 Sum_probs=26.3
Q ss_pred HHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 230 IIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 230 ~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
.+.|+| |-......-+|+|||++ +.+|+...+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~~ 234 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK-NYPIAILIA 234 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc-chhHHHHHH
Confidence 457899 99999999999999964 888876654
No 54
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.45 E-value=0.014 Score=52.58 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=83.2
Q ss_pred ccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHH----HHHHHHHHHHHHcchhcc
Q 024688 13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG----FVTFYSYYLMSKVLDHCE 88 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~----~~~~~s~~lL~~~~~~~~ 88 (264)
.+..+||.| --..+.+.-.-+=..++-|+|-+-=|-.-.+.||+++.+++++=+ .+-.|....+. .|+
T Consensus 40 A~~~~DGvD----YvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S--vR~-- 111 (376)
T PF02554_consen 40 AHTMNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS--VRH-- 111 (376)
T ss_pred eeECCCCCC----CCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh--hcC--
Confidence 444666654 223335566777788999999999999999999999998876643 34444443332 222
Q ss_pred ccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 024688 89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI 139 (264)
Q Consensus 89 ~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~ 139 (264)
. -+ |..|++++..|++ +|.+..+...+.+.....++....++.+..
T Consensus 112 -~-G~--Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 112 -K-GK--SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred -C-Cc--cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 23 9999999999995 889999999988888888887777776644
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.39 E-value=0.007 Score=53.58 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=89.3
Q ss_pred HHHHHHHhhhhhhhhhhHHHH---HHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCch
Q 024688 33 HAGFHLTTAIVGPTILTLPYV---FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW 109 (264)
Q Consensus 33 ~a~~~l~~~~iG~GiL~LP~a---~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 109 (264)
.-.|..+.+++|+|-=+===. |.+-|+ .|....++.+++-..++..+.+..++ .+.+ +|+|+-+..+|+++
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~---f~a~--~y~~~~~~v~~~~~ 80 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKK---FNAT--SYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH---hccc--chHHHHHHHhhHHH
Confidence 345666778999884331111 233343 46666777777777788888887776 3334 99999999999987
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHH--HHHHHHHHHHhcCCCcchhhHHH
Q 024688 110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 110 g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~--~i~~~i~~pls~~r~l~~l~~~S 179 (264)
+ ++.|+.+.+.++++++..+-=.|..+++.+ +...|+ ++...++.-+-++++.+.+-.+.
T Consensus 81 ~-ki~d~~iif~lf~~~vVM~AGags~~~e~~---------~lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 81 A-KIIDIIIIFFLFSTAVVMLAGAGSLLEEMF---------GLPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred H-HHHHHHHHHHHHHHHHHHhccchhHHHHHh---------CccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 7 888999999999999888777777787764 233443 34444455555667666665544
No 56
>PRK11375 allantoin permease; Provisional
Probab=97.30 E-value=0.15 Score=48.30 Aligned_cols=221 Identities=11% Similarity=0.014 Sum_probs=107.9
Q ss_pred ccCCCCccceeccCCc-------hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc
Q 024688 15 RDSDAGAAFVLESKGE-------WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~s-------~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~ 87 (264)
..+|-.-...++|+.+ |+...+|+.+-.++.|.+++ ..++..+++..++-.++...-+.+..+.-.
T Consensus 13 ~n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~-----GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~-- 85 (484)
T PRK11375 13 YSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFIL-----GLSTFSIMLAIILSAFFIAAVMVLNGAAGS-- 85 (484)
T ss_pred cCCCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 3445444445677665 44445555554444454432 233334444433333332222223333222
Q ss_pred cccCcccccHHHHHHHHhCCchhHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhcccC------C----CCchh--hH
Q 024688 88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYP------N----GSLKL--YE 154 (264)
Q Consensus 88 ~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~-~~~~g~~i~y~i~~~~~l~~~~~~~~~------~----~~~~~--~~ 154 (264)
+...++.-+.|..||++ |.++..+... +..+|=-.....+.++.+..++....| + .+... ..
T Consensus 86 ----~~Gl~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i 160 (484)
T PRK11375 86 ----KYGVPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLI 160 (484)
T ss_pred ----ccCCChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHH
Confidence 22469999999999995 8777777763 444455455556677777766544321 1 11222 22
Q ss_pred HHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCccccC--CchhhhhhHHHHHHHH
Q 024688 155 FIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFSKNAPPKDYSLES--SKSARIFSAFTSISII 231 (264)
Q Consensus 155 ~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (264)
..+++.++.+++.. ...+.+++++.++........+.+.+..+.+ +.. +..+....+ +.....+.+..++...
T Consensus 161 ~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~i~~v 236 (484)
T PRK11375 161 TFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIG---PIFDYIPSGIQKAENSGFLFLVVINAV 236 (484)
T ss_pred HHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---hhhccCcccccCCcchHHHHHHHHHHH
Confidence 22355566677765 4567777777666654333222222222222 211 001111110 1111223444444333
Q ss_pred HHHh--ccCchHHHHHhccccc
Q 024688 232 AAIF--GNGILPEIQLQFLDIG 251 (264)
Q Consensus 232 ~faf--~~~~~~~i~~~m~~p~ 251 (264)
+=++ .-.+.|+.-+..|+|.
T Consensus 237 ig~~~~~~~~~~D~tRy~k~~~ 258 (484)
T PRK11375 237 VAVWAAPAVSASDFTQNAHSFR 258 (484)
T ss_pred HHHHHHHHccccchhcccCChh
Confidence 3334 3348999999988874
No 57
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0014 Score=62.60 Aligned_cols=232 Identities=10% Similarity=0.019 Sum_probs=128.6
Q ss_pred eeccCCchHHHHHHHHhhhhhhhhhh-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhcccc-CcccccHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA-GRRHIRFRELA 101 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~GiL~-LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~-~~~~~sy~~l~ 101 (264)
..+|.-++++-.+.=+.+++|+|+.- ...+.++.|-..-++-.++.++....+..-+.|..-+.|.. | ++-.-+
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~ya 102 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTYA 102 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceeee
Confidence 45777788888888899999999864 56667777766566666666677777777788876665532 2 222223
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh-c-ccCC-CCchhhHHHHH--HHHHHHHHhcCCCcchhh
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS-D-LYPN-GSLKLYEFIAM--VTVVMIVLSQLPTFHSLR 176 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~-~-~~~~-~~~~~~~~~~i--~~~i~~pls~~r~l~~l~ 176 (264)
++..|+-|| .++..-..+.-...+-+-....+..++.+.. . .... +..+...|..+ ..++++.+...|-....+
T Consensus 103 ~~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 103 YRFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred eeeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 455666566 6666666666666666666666666666540 0 0000 11222223222 223333333444444444
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCC---CCCCCCccc-cCCchhh-hhhHHHHHHHHHHHh-ccCchHHHHHhccc
Q 024688 177 HINLVSLLLSLG-YSFLVVGACINAGFSK---NAPPKDYSL-ESSKSAR-IFSAFTSISIIAAIF-GNGILPEIQLQFLD 249 (264)
Q Consensus 177 ~~S~~~~~~~~~-~~~~ii~~~~~~~~~~---~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~faf-~~~~~~~i~~~m~~ 249 (264)
+.+.+..+.+++ +.++.++. ...+.+. +....++.- ++.-.+. +.+++..+.+..|+| +--.+-..-+|-||
T Consensus 182 f~~~~~kvl~~v~~~Il~iVi-~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN 260 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILAIVI-IAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN 260 (554)
T ss_pred ehHHHHHHHHHHHHHHhheee-ecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 443333322221 11111110 1111111 111001100 0000112 447889999999999 99999999999999
Q ss_pred cccccceeeeecc
Q 024688 250 IGHLEMNRIQTFS 262 (264)
Q Consensus 250 p~~~~m~~~~~~~ 262 (264)
|+ |+.+++.+.+
T Consensus 261 P~-k~IP~ai~~s 272 (554)
T KOG1286|consen 261 PR-KAIPKAIKQS 272 (554)
T ss_pred Cc-ccccHHHHHH
Confidence 96 6777776654
No 58
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.13 E-value=0.049 Score=50.46 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=76.9
Q ss_pred cCCchHHHHHHHHhhhhhhh-hhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccH-----HHH
Q 024688 27 SKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRF-----REL 100 (264)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy-----~~l 100 (264)
++-|-+++.+..+.+.+|.| |+++|.|.+..| ..++.+|-+.+++..-+.+.-.-...++.+.+. +.+| -.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CCCEecChHHHH
Confidence 44689999999999999998 999999987777 456666666665554444443333333211111 1135 567
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHH
Q 024688 101 AADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180 (264)
Q Consensus 101 ~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~ 180 (264)
-+...||++| .+..+++..+....+....-.+.+.++..+ +...+. ..+..+++.-+.....++++..++-
T Consensus 123 ~~gl~~k~lg-~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~-------~~~~~v-~~i~l~~l~~~vi~GGik~Ia~v~~ 193 (425)
T TIGR00835 123 KKGLGMRWLA-VLFAVFLIASFGIGNMVQANAIASALSNAF-------NVPKLV-TGIVLTVLTALIIFGGLKRIAKISS 193 (425)
T ss_pred HHHhCccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHc-------CCcHHH-HHHHHHHHHHHHHhcCchHHHHHHH
Confidence 7777777434 443444222212223333333333443221 122222 2223333333334456666666665
Q ss_pred HHH
Q 024688 181 VSL 183 (264)
Q Consensus 181 ~~~ 183 (264)
.-+
T Consensus 194 ~lv 196 (425)
T TIGR00835 194 VVV 196 (425)
T ss_pred HHH
Confidence 444
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.97 E-value=0.29 Score=46.07 Aligned_cols=150 Identities=5% Similarity=0.098 Sum_probs=97.1
Q ss_pred eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHH----HHHcchhccccCcccccHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYL----MSKVLDHCEKAGRRHIRFR 98 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~l----L~~~~~~~~~~~~~~~sy~ 98 (264)
+--|+-+++.....+..+.+| ...++.|-...+.|+.+..+..... ...+....+ +.+..++ .+ ..|..
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~--~~T~~ 110 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQV-PTGYFVLGVLGKKFAIISRK---YN--AITIN 110 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---cC--CccHH
Confidence 346777888888888888887 4566788888888864321111100 011111112 2222333 33 45999
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHH
Q 024688 99 ELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHI 178 (264)
Q Consensus 99 ~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~ 178 (264)
|.-++-||++..+.+..+...+..++...+.+.-.+..++.++. .+....+++..++++-.+..--++...++
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GG~~av~~t 183 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------LSYLTALFIFSSSVLIYTTFGGFRAVALT 183 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999765677888888877777777777777777777652 44444456666667777788888888888
Q ss_pred HHHHHHHH
Q 024688 179 NLVSLLLS 186 (264)
Q Consensus 179 S~~~~~~~ 186 (264)
..+=.+..
T Consensus 184 d~iQ~~v~ 191 (471)
T TIGR02119 184 DAIQGIVM 191 (471)
T ss_pred HHHHHHHH
Confidence 77665433
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.93 E-value=0.25 Score=46.66 Aligned_cols=152 Identities=5% Similarity=0.026 Sum_probs=93.3
Q ss_pred eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHH--HHHHH-HHHHHHHHHHHcchhccccCcccccHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCL--TVMGF-VTFYSYYLMSKVLDHCEKAGRRHIRFRE 99 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l--~~~~~-~~~~s~~lL~~~~~~~~~~~~~~~sy~~ 99 (264)
+-.|+-+++-..+.+..+.+| ...++.|-...+.|+.+....+ ..... ...+-+..+.+..++ .+ ..|..|
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e 112 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YN--AVTLND 112 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CccHHH
Confidence 346776777777777777666 5778888777777864211111 11111 111112223333343 33 459999
Q ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688 100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 100 l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S 179 (264)
.-++-||++..+.+..+...+..+....+.+.-.+..++.++. ......+++..++++-.+...-++...++.
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~av~~TD 185 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------ISYETGLLIFGITVALYTAFGGFRAVVLTD 185 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999765667777766666666666666677777777642 334444556666677788888888888887
Q ss_pred HHHHHHHH
Q 024688 180 LVSLLLSL 187 (264)
Q Consensus 180 ~~~~~~~~ 187 (264)
.+=.+..+
T Consensus 186 ~iQ~~i~~ 193 (483)
T PRK09442 186 ALQGIVML 193 (483)
T ss_pred HHHHHHHH
Confidence 66554333
No 61
>PRK15015 carbon starvation protein A; Provisional
Probab=96.76 E-value=0.043 Score=52.87 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=93.8
Q ss_pred cccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHH----HHHHHHHHHHHcchhc
Q 024688 12 EVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGF----VTFYSYYLMSKVLDHC 87 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~----~~~~s~~lL~~~~~~~ 87 (264)
+....+||.| ++.-+ -+--.-+=..++-|+|-+-=|..-++.||+++.+++++=.+ +-.|... .-+.++
T Consensus 70 PA~~~~DG~D-YvPt~---k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L--~~S~R~- 142 (701)
T PRK15015 70 PAVRHNDGLD-YVPTD---KKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVL--FVSTRR- 142 (701)
T ss_pred CceECCCCCC-cCcCC---ccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhe--eeeecC-
Confidence 3444667755 22222 22344566678899999999999999999999999776443 3333322 222332
Q ss_pred cccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHh
Q 024688 88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS 167 (264)
Q Consensus 88 ~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls 167 (264)
. -| |..|++++..|++ ++.+..+.+++.+.....++..++.+.+... |.+. ...++.+-..+++-+-
T Consensus 143 --~-Gr--Sig~ia~~~iG~~-~~~lfli~i~~iliiviAvfalvvv~al~~s-----P~~~--fsv~~tIpiAl~mG~~ 209 (701)
T PRK15015 143 --D-GR--SLGELVKEEMGPT-AGVIALVACFMIMVIILAVLAMIVVKALTHS-----PWGT--YTVAFTIPLALFMGIY 209 (701)
T ss_pred --C-Cc--cHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----cHHH--HHHHHHHHHHHHHHHH
Confidence 2 24 9999999999995 8888888888877777777766666665321 1111 1112222222222221
Q ss_pred c-CCCcchhhHHHHHHHHHH
Q 024688 168 Q-LPTFHSLRHINLVSLLLS 186 (264)
Q Consensus 168 ~-~r~l~~l~~~S~~~~~~~ 186 (264)
+ -++.+.....|.++++..
T Consensus 210 l~~~r~g~v~~~SiiGvvll 229 (701)
T PRK15015 210 LRYLRPGRIGEVSVIGLVFL 229 (701)
T ss_pred heeecCCchHHHHHHHHHHH
Confidence 1 224555666788887643
No 62
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.62 E-value=0.075 Score=50.18 Aligned_cols=119 Identities=17% Similarity=0.154 Sum_probs=80.4
Q ss_pred cccccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHHHcchhc
Q 024688 10 FLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF--YSYYLMSKVLDHC 87 (264)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~--~s~~lL~~~~~~~ 87 (264)
..+.+..+||.| -=..+.+...-+=..++-|+|-+-=|.--++.||.+|.+++++=.++.. .=...+.-+.||
T Consensus 37 ~TPA~~~nDG~D----YVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~- 111 (575)
T COG1966 37 PTPAHRKNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH- 111 (575)
T ss_pred CCCceeccCCcc----cccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc-
Confidence 334555677755 2233455666777778999999999999999999999999876554321 111111212222
Q ss_pred cccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 024688 88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI 139 (264)
Q Consensus 88 ~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~ 139 (264)
. -.|-.|++++.+|++ .+.+..+...+.......++...+.+.+.+
T Consensus 112 --~---G~Si~~ia~~~lG~~-a~~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 112 --G---GKSIGEIAGKYLGRT-AKVFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred --C---CccHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 239999999999996 678888887777777766666666665544
No 63
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.41 E-value=0.75 Score=42.20 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=85.4
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchh
Q 024688 31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (264)
Q Consensus 31 ~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (264)
|+...+|+.+-..|+.... .++--+++..++-.++...-.-+....-. +...++.-+.|..||++ |
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~------~~Gl~~~v~sR~~FG~~-G 72 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA------DTGLSAMGSLKLSLGSK-G 72 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCcCHHHHHHHHHccc-h
Confidence 6677777777777654321 44444444433333332222223332222 12458999999999995 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 024688 111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY 189 (264)
Q Consensus 111 ~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~ 189 (264)
.++..+...+...|=-.......++.+..+.....+. .....++++..++.++.+.. ..+.++++..++.......
T Consensus 73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i~ 148 (386)
T TIGR02358 73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE--ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWLLLIA 148 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999988888888887778888899998887543211 12233445555555555543 4677777777776544433
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.38 E-value=0.51 Score=43.43 Aligned_cols=147 Identities=10% Similarity=0.105 Sum_probs=96.1
Q ss_pred cCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 27 SKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 27 ~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
|+-+++...+.+..+.+| ...++.|....+.|+.. ........+......++..+..++ .+ ..|..|.-+.-|
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e~l~~Ry 76 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN---NG--AYTMPEYLEKRF 76 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---cC--CCchhHHHHHHh
Confidence 555566677777666666 67788888888888532 221122222223344444444443 33 459999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~ 185 (264)
|++..|.+..+...+..+....+.+.-.+..++.+.. .....-+++..++++-.+..--++...++..+=.+.
T Consensus 77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 9866778777877788888888888888888877652 333443455566666677777888888887766544
Q ss_pred H
Q 024688 186 S 186 (264)
Q Consensus 186 ~ 186 (264)
.
T Consensus 150 ~ 150 (407)
T TIGR00813 150 M 150 (407)
T ss_pred H
Confidence 3
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=95.95 E-value=0.7 Score=42.43 Aligned_cols=148 Identities=13% Similarity=0.201 Sum_probs=85.2
Q ss_pred ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
.|+.+++-..+.+..+.+| ...++.|-...+.|+.. ...-+...+.......++.+-.++ .+ ..|..|.-++-
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e~~~~R 78 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR---SG--AVTIPEYLEKR 78 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH---TT----SHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc---cc--hhhhhhhhhhh
Confidence 4666788888888887777 46788899999999753 222222222223333444444443 33 44999999999
Q ss_pred hCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 105 ~G~~~-g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
||++. .|.+..+...+.........+.-.+..++.++ +.+....+++..++++-.+..--++...++..+=.
T Consensus 79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~-------gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF-------GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-------T--HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred cCCchhhhhhcccccchhhhhhhhccccccccchhhcc-------chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 99973 26666666666666777777777777777664 23444445566666677777777888887776555
Q ss_pred HHH
Q 024688 184 LLS 186 (264)
Q Consensus 184 ~~~ 186 (264)
+..
T Consensus 152 ~i~ 154 (406)
T PF00474_consen 152 VIM 154 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=95.89 E-value=1.4 Score=40.62 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=50.1
Q ss_pred cccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcc
Q 024688 94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH 173 (264)
Q Consensus 94 ~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~ 173 (264)
..++.-+.|..||.+ |.++..+...+...|=........++.++.... .....+.+++.++..+.+... .+
T Consensus 70 G~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-------~~~~~~~~i~~~l~~~~~~~G-~~ 140 (404)
T PRK11017 70 GLSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-------LDINLLIVLSGLLMTVTAYFG-IS 140 (404)
T ss_pred CcCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHH-HH
Confidence 469999999999994 988888777766666555555556666655432 112224455555555555432 44
Q ss_pred hhhHHHHHHHH
Q 024688 174 SLRHINLVSLL 184 (264)
Q Consensus 174 ~l~~~S~~~~~ 184 (264)
.+++++.++..
T Consensus 141 ~i~~~~~~~~p 151 (404)
T PRK11017 141 ALTILSRIAVP 151 (404)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 67
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=95.78 E-value=0.18 Score=46.86 Aligned_cols=112 Identities=11% Similarity=0.017 Sum_probs=62.3
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRG--LGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~--~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
+|+.++++-+..-....+....+.+-..... .++--+++.+++-.++...-.-++...-.| . ..++.-+.|.
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---~---Gl~~~v~sR~ 79 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---T---GLPTMVLSRA 79 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---C------HHHHTTT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---c---CCCchhcchh
Confidence 5666555544444444444443333333322 333444444444443333323333333222 2 3488899999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL 144 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~ 144 (264)
.||. +|..+..+...+...|=...-..+.++.+..+....
T Consensus 80 ~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 80 SFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp TS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999 599999999888888888888888999999887654
No 68
>PRK12488 acetate permease; Provisional
Probab=95.46 E-value=2.6 Score=40.57 Aligned_cols=149 Identities=10% Similarity=0.184 Sum_probs=94.5
Q ss_pred eeccCCchHHHHHHHHhhhhhh-hhhhHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHcchhccccCcccccHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG~-GiL~LP~a~~~~G~v~g~i~l~~~~~~~~-~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
+--|+-+++...+.+..+.+++ ..++.|-.....|+-. ...... ..+.+ ....++.+-.++ .+ ..|..|.-
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~~g-~~~g~~~~~~~~a~~lr~---~g--~~T~~d~l 136 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYALG-VLAGWPIILFLIAERLRN---LG--KYTFADVV 136 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHHHH-HHHHHHHHHHHHHHHHHH---CC--CcchHHHH
Confidence 3466777888888888887774 4688998888888632 111111 11111 112333433333 33 35999998
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~ 181 (264)
+.=||.|..|.+..+...+..+.-....+.-.+..++.++. .....-+++..++++-.+..--++...++..+
T Consensus 137 ~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-------ISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred HHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88888545778888877777777777777777777776642 33333355566666777777788888888776
Q ss_pred HHHHH
Q 024688 182 SLLLS 186 (264)
Q Consensus 182 ~~~~~ 186 (264)
=.+..
T Consensus 210 Q~~im 214 (549)
T PRK12488 210 KAVLL 214 (549)
T ss_pred HHHHH
Confidence 65433
No 69
>PRK09395 actP acetate permease; Provisional
Probab=95.44 E-value=2.6 Score=40.54 Aligned_cols=147 Identities=13% Similarity=0.142 Sum_probs=88.2
Q ss_pred eccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
-.|+-+++...+.+..+.++ ...++.|-...+.|+..- .......+-......++.+-.++ .+ ..|+.|.-+.
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~-~~~~~~~~g~~~~~~~~~~~~r~---~g--~~T~~d~l~~ 140 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGL-IYSIGFLVGWPIILFLIAERLRN---LG--KYTFADVASY 140 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHhh---CC--CccHHHHHHH
Confidence 35666777777777777666 567889988888887431 11111111111122333443333 33 3599999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
=||+|.-|.+..+...+..+....+.+.-.+..++.+. +.+....+++..++++-.+..--++...++..+=.
T Consensus 141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~-------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~ 213 (551)
T PRK09395 141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF-------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKA 213 (551)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 99954467777776665555555555555666666653 23344445556666667777777888777776554
Q ss_pred H
Q 024688 184 L 184 (264)
Q Consensus 184 ~ 184 (264)
+
T Consensus 214 i 214 (551)
T PRK09395 214 V 214 (551)
T ss_pred H
Confidence 3
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.03 E-value=3.6 Score=39.67 Aligned_cols=147 Identities=11% Similarity=0.179 Sum_probs=88.6
Q ss_pred eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHcchhccccCcccccHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~-~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
.--|+.+++...+.+..+.++ ...++.|-...+.|+-. ....+. ..+.+ ...+++.+-.++ .+ ..|..|.-
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~g-~~~~~~i~~~~~a~~lrr---~g--~~T~~d~l 136 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSLG-FLVGWPIILFLIAERLRN---LG--RYTFADVA 136 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHH-HHHHHHHHHHHHHHHHHH---cC--CccHHHHH
Confidence 345666677767777777665 67889998888888632 211111 11111 223444444443 34 35999999
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~ 181 (264)
+.=||.|.-|.+..+...+..+.-....+.-.+..++.++. .....-+++..++++--+..--++...++..+
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-------LNYHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88887544677777766666666566666666666666542 23333345555666666677777777777765
Q ss_pred HHH
Q 024688 182 SLL 184 (264)
Q Consensus 182 ~~~ 184 (264)
=.+
T Consensus 210 Q~~ 212 (549)
T TIGR02711 210 KAV 212 (549)
T ss_pred HHH
Confidence 543
No 71
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.91 E-value=0.89 Score=41.64 Aligned_cols=78 Identities=13% Similarity=0.238 Sum_probs=58.0
Q ss_pred ccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcch
Q 024688 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS 174 (264)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~ 174 (264)
.-..+++++.||+ +|+.+..+.+.+.|++++++.....+|.++++.. ..+...|.++..++.+-++.. .++.
T Consensus 255 ~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~------k~~y~~~v~~~~l~s~~ia~~-Gl~~ 326 (378)
T TIGR00796 255 QILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP------KLSYKTWVIVFTLFSFIVANL-GLTQ 326 (378)
T ss_pred HHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHh-CHHH
Confidence 3778899999999 6999999999999999999999999999988753 244555555555555555443 4555
Q ss_pred hhHHHH
Q 024688 175 LRHINL 180 (264)
Q Consensus 175 l~~~S~ 180 (264)
+-..+.
T Consensus 327 Ii~~~~ 332 (378)
T TIGR00796 327 IISISI 332 (378)
T ss_pred HHHHHH
Confidence 444443
No 72
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.68 E-value=1.1 Score=42.52 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=97.4
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchh
Q 024688 31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (264)
Q Consensus 31 ~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (264)
.++..|-+.+...|.- .+|.+.+...|-..-.-..++.++.......=|.|.+-..|..|. -|--.+. .-++|||
T Consensus 55 ~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg---Ly~waa~-lap~k~~ 129 (550)
T KOG1289|consen 55 IFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG---LYFWAAV-LAPPKYG 129 (550)
T ss_pred HHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc---HHHHHHH-hcCcchh
Confidence 4455555555555421 256666665553322222444455556666667776665443332 2332222 2355666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHH---HhcCCCcchhhHHHHHHHH
Q 024688 111 FYFVIFIQTAINTGVGIGAIL---LAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIV---LSQLPTFHSLRHINLVSLL 184 (264)
Q Consensus 111 ~~~~~i~i~~~~~g~~i~y~i---~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~p---ls~~r~l~~l~~~S~~~~~ 184 (264)
+....+.-....+|-....-- ..++.+.......+|+-..+.+...+++.++++. +.+++ -+.+++.+.+++.
T Consensus 130 ~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p-~r~l~~I~~~~~~ 208 (550)
T KOG1289|consen 130 PFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLP-TRVLARINSVSVY 208 (550)
T ss_pred hHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCC-cHHHHHHHHHHHH
Confidence 444333333222222221111 1122222222223444322222222333333333 33322 3456666666665
Q ss_pred HHHHHHHHHHHHHHhcCCCCC--CCCCCccc---cC-Cch-hhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688 185 LSLGYSFLVVGACINAGFSKN--APPKDYSL---ES-SKS-ARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN 256 (264)
Q Consensus 185 ~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~ 256 (264)
..++..++.++...... .++ .+..++-. .+ ++. +.-|.+..++-.-+..+ |-..-..+-+|-||+++ +-.
T Consensus 209 ~~ll~~~i~~I~lla~~-~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk-~aP 286 (550)
T KOG1289|consen 209 LNLLFLVILMITLLAAS-SKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASK-AAP 286 (550)
T ss_pred HHHHHHHHHHHHhhhcc-CCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhh-hcc
Confidence 44443333222211111 111 11111111 11 111 13455666677777778 88899999999999863 444
Q ss_pred ee
Q 024688 257 RI 258 (264)
Q Consensus 257 ~~ 258 (264)
|+
T Consensus 287 rg 288 (550)
T KOG1289|consen 287 RG 288 (550)
T ss_pred HH
Confidence 43
No 73
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=94.32 E-value=4.6 Score=37.75 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=79.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhh
Q 024688 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR 176 (264)
Q Consensus 97 y~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~ 176 (264)
=-.+.|..||. +|.++..+.+.+.+.|=...-.+..++.... ........++++..++++..+.. -.+.+.
T Consensus 83 qmi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~-------~~~~~~~~~ili~g~l~~l~~if-G~r~l~ 153 (442)
T COG1457 83 QMILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGS-------GTGLPVWAGILIIGVLMTLVTIF-GYRALH 153 (442)
T ss_pred hheeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhcccccc-------CCCCcHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 34467899999 5999999999999999998888888887111 12445566666666666655543 355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh--ccCchHHHHHhcccccc
Q 024688 177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQLQFLDIGH 252 (264)
Q Consensus 177 ~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~m~~p~~ 252 (264)
.++..++...++.....++...... . ..+..... ...+...+..+++..+=.+ .-....+.-+.+|+|++
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~---~--~~~~~~~~-~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~ 225 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSK---G--GLDALWVK-GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP 225 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---c--ccceeecc-CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch
Confidence 5555555433222222222222211 0 01111100 0111123444444333333 55688899999988874
No 74
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.65 E-value=1.4 Score=40.99 Aligned_cols=77 Identities=14% Similarity=0.259 Sum_probs=59.4
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchh
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l 175 (264)
-..+++++.+|+ .|..+..+.+.+.|+-++++.....+|.+++.++ ..+...|.++++++-+.++.. .++.+
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~------kisY~~~v~i~~i~S~~ian~-Gl~~I 333 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP------KISYKVWVIIFTIFSFIIANL-GLDQI 333 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHHHh-CHHHH
Confidence 677789999999 6999999999999999999999999999999864 344555666666666666554 34444
Q ss_pred hHHHH
Q 024688 176 RHINL 180 (264)
Q Consensus 176 ~~~S~ 180 (264)
-..|.
T Consensus 334 i~~s~ 338 (427)
T PF05525_consen 334 IKISV 338 (427)
T ss_pred HHHHH
Confidence 44443
No 75
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=92.53 E-value=9.8 Score=36.14 Aligned_cols=146 Identities=9% Similarity=0.046 Sum_probs=94.8
Q ss_pred ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLT---VMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~---~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
.|+-+.+-..+...-+..+ .-.+++|-.....|+...-+... ...+.-.+-...+.+..++ .+ ..|..|.-
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~--~~T~~d~l 111 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RG--ATTIPDFL 111 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC--CccHHHHH
Confidence 3443444556666666666 88999999999999654333222 2333334444444444432 33 45999999
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~ 181 (264)
++=||.++.|.++.+...+..+.-+...+.-.+..++..+. .+...-+.+..+++..-+.+--++...++..+
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 99999447999999999999999999999999988866542 22222233344555555666667777777654
Q ss_pred HH
Q 024688 182 SL 183 (264)
Q Consensus 182 ~~ 183 (264)
=-
T Consensus 185 qg 186 (493)
T COG0591 185 QG 186 (493)
T ss_pred HH
Confidence 33
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=91.99 E-value=11 Score=35.70 Aligned_cols=154 Identities=7% Similarity=0.016 Sum_probs=85.4
Q ss_pred eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcchhccccCcccccHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
.--|+-+++-..+.+..+.++ ...++.|....+.|+-. ....+...+. .....++.+-.+..........|..|.-
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l 114 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYF 114 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHH
Confidence 346777788777777777766 55678999888889643 1111111111 1111222211111000011245899998
Q ss_pred HHHhCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688 102 ADVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 102 ~~~~G~~--~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S 179 (264)
++=||++ +-|.+..+...+....-+.+.+...+..++.++ +.+....+++..++++.-+..--++...++.
T Consensus 115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~-------gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF-------GMSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9899863 333444555544444444444555566666554 2334444566667777777778888888887
Q ss_pred HHHHHHH
Q 024688 180 LVSLLLS 186 (264)
Q Consensus 180 ~~~~~~~ 186 (264)
.+=.+..
T Consensus 188 ~iQ~~im 194 (502)
T PRK15419 188 TVQASLM 194 (502)
T ss_pred HHHHHHH
Confidence 6655433
No 77
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=91.94 E-value=12 Score=35.96 Aligned_cols=147 Identities=8% Similarity=0.016 Sum_probs=91.1
Q ss_pred eccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
--|+-+++...+.+..+.++ ...++.|-...+.|+-.-...+ ...........++.+-.++ .+ ..|-.|.-+.
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr---~~--~~T~~e~l~~ 103 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRK---FG--KYTVPDFIGD 103 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHH---CC--CccHHHHHHH
Confidence 35777788888888878775 5678888877777863211111 1111112233555555554 44 3488888888
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
=||+|..|.++.+...+..+.-....+.-.+..++.+.. .+...-+++..++++--+..--++...++-.+=.
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888655567777777666666666666666677766642 3333334555666666677777888877776554
Q ss_pred H
Q 024688 184 L 184 (264)
Q Consensus 184 ~ 184 (264)
+
T Consensus 177 i 177 (552)
T TIGR03648 177 I 177 (552)
T ss_pred H
Confidence 3
No 78
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.16 E-value=9.9 Score=35.14 Aligned_cols=78 Identities=13% Similarity=0.257 Sum_probs=58.6
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchh
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l 175 (264)
=..+..++.||+ .|+.+...++.+.|+-++++.+...+|.+++..+ ..+...|..++.++-+.++.. .++++
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p------~~SY~~~v~if~i~sflvan~-GL~~I 335 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP------KLSYKTWVIIFTLISFLVANL-GLEQI 335 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 567788999999 7999999999999999999999999999999875 244555566666665555544 34444
Q ss_pred hHHHHH
Q 024688 176 RHINLV 181 (264)
Q Consensus 176 ~~~S~~ 181 (264)
-..|..
T Consensus 336 i~isvP 341 (431)
T COG1114 336 IKISVP 341 (431)
T ss_pred HHHHHH
Confidence 444443
No 79
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.97 E-value=11 Score=35.24 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=57.3
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchh
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l 175 (264)
=....+++.+|+ +|+.+..+.+.+.|+.++++-....+|.+++.++ .+...|.++.+++-++++.+ .++++
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-------isY~~~v~i~~l~S~~lSn~-G~~~I 336 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-------LSYRTLVFILGGFSMVVSNL-GLSQL 336 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHh-HHHHH
Confidence 445578899999 7999999999999999999999999999888742 44555666677777777664 24444
Q ss_pred hHHHH
Q 024688 176 RHINL 180 (264)
Q Consensus 176 ~~~S~ 180 (264)
-..+.
T Consensus 337 I~~s~ 341 (439)
T PRK15433 337 IQISV 341 (439)
T ss_pred HHHHH
Confidence 44443
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=79.05 E-value=49 Score=29.82 Aligned_cols=80 Identities=20% Similarity=0.387 Sum_probs=49.5
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhc--CCCcc
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFH 173 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~--~r~l~ 173 (264)
+-.|..++-+||+|+ ++..+...+.+.....+-+.-.+.-++.++ +.....+.++..+..+-+-+ .++.+
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-------g~~~~~~~~~~~~~~~~ll~~~~~~y~ 114 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF-------GIPLWIWVLLVAVIAILLLWLSSGGYR 114 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCCcHHHHHHHHHHHHHHHHHHhccch
Confidence 888888889998665 777777777777776666666665555543 23344444444444333333 66777
Q ss_pred hhhHHHHHHH
Q 024688 174 SLRHINLVSL 183 (264)
Q Consensus 174 ~l~~~S~~~~ 183 (264)
.+..+...-+
T Consensus 115 ~~E~~~~~lv 124 (358)
T PF01566_consen 115 RLERILKVLV 124 (358)
T ss_pred HHHHHHHHHH
Confidence 7776665444
No 81
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=77.99 E-value=63 Score=30.52 Aligned_cols=152 Identities=9% Similarity=0.096 Sum_probs=82.7
Q ss_pred eccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
-.|+-+++-..+.+..+.++ ...++.|-...+.|+.. ........+.......++.+-.++..+.+.+..|-.|.-+.
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 36777788787877777666 44677887777888743 11111111222223334433222210001234599999999
Q ss_pred HhCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688 104 VLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV 181 (264)
Q Consensus 104 ~~G~~--~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~ 181 (264)
=||++ .-+.+..+...+....-....+.-.+..++.++. ......+++..++++--+..--++...++..+
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-------i~~~~~iii~~~i~~~Yt~~GGl~av~~TD~i 185 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-------LDYKTGLLIGALIIVIYTFFGGFLAVSWTDFV 185 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99963 2233344444333333344444455556665542 33333345555666666677777778777766
Q ss_pred HHH
Q 024688 182 SLL 184 (264)
Q Consensus 182 ~~~ 184 (264)
=.+
T Consensus 186 Q~~ 188 (487)
T TIGR02121 186 QGL 188 (487)
T ss_pred HHH
Confidence 554
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=74.31 E-value=23 Score=35.40 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=92.7
Q ss_pred ccCCchHHHHHHHHhhhhhhh-hhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchh--ccccCcccccHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH--CEKAGRRHIRFRELAA 102 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~--~~~~~~~~~sy~~l~~ 102 (264)
.|-++..+-..--+..++|.= -+=|-|..-.+|...+.++..+++..+..|..=+...+.. .|..| +|--+.|
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG----sYfmISR 187 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG----SYFMISR 187 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC----eeEEEec
Confidence 445555554454555555532 3457788888999999999998888888888888877765 23222 5554444
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-Hhhc---ccC-----CC---CchhhHHHHHHHHHHH--HHhc
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI-MYSD---LYP-----NG---SLKLYEFIAMVTVVMI--VLSQ 168 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~-~~~~---~~~-----~~---~~~~~~~~~i~~~i~~--pls~ 168 (264)
.+|+..| -.+.+|.++..-.+..-|++=.-+.+-. +++. +.. +. ..+.+.|-.+++++.. .+.=
T Consensus 188 -sLGPEFG-gAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~G 265 (1075)
T KOG2082|consen 188 -SLGPEFG-GAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVG 265 (1075)
T ss_pred -ccCcccc-ceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHH
Confidence 4555566 6677777766666655565544343322 3221 111 10 1233444333332222 2223
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 024688 169 LPTFHSLRHINLVSLLLSLGYSFLVVGAC 197 (264)
Q Consensus 169 ~r~l~~l~~~S~~~~~~~~~~~~~ii~~~ 197 (264)
.|-+++++.+++.+++.+++.+...++.+
T Consensus 266 VK~Vnk~A~vfL~CVILSIlaiyaG~i~~ 294 (1075)
T KOG2082|consen 266 VKFVNKFAPVFLACVILSILAIYAGGIKS 294 (1075)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Confidence 45667777777777665555444444443
No 83
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=71.37 E-value=89 Score=29.13 Aligned_cols=160 Identities=11% Similarity=0.120 Sum_probs=79.6
Q ss_pred ccCCchHHHHHHHHhhhhhhh-hhhHHHHHHhhChhHHHHHHHHHHHHHH---HHHHHHHHcchhccccCcccccHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTF---YSYYLMSKVLDHCEKAGRRHIRFRELA 101 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G~v~g~i~l~~~~~~~~---~s~~lL~~~~~~~~~~~~~~~sy~~l~ 101 (264)
+++-|-++|.+.-+.+.+|+| |.+...|....| ..++.+|-+.+++.. |+=..|..-+++.++.|.-.=.=.--.
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi 94 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYI 94 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHH
Confidence 456689999999999999988 566777887666 356677766666544 333334444332111111000011134
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGV--GIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~--~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S 179 (264)
++.+|.||...+..++ .+..++. .....-.+.+.++..+ +..... ..+...++.-+..+.-++++..++
T Consensus 95 ~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f-------~i~~~~-~gi~l~~l~~~vi~GGikrI~~v~ 165 (416)
T PF01235_consen 95 EKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAF-------GIPPWI-TGIILAILVALVIFGGIKRIAKVS 165 (416)
T ss_pred HHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhc-------cccHHH-HHHHHHHHHHHHHHcchhHHHHHH
Confidence 5667776644444444 1222222 2233222333333221 222222 233333344444555666666655
Q ss_pred HH-HHHHHHHHHHHHHH
Q 024688 180 LV-SLLLSLGYSFLVVG 195 (264)
Q Consensus 180 ~~-~~~~~~~~~~~ii~ 195 (264)
-. .=++.+.|++..++
T Consensus 166 ~~lVP~Ma~~Yi~~~l~ 182 (416)
T PF01235_consen 166 EKLVPFMAILYILGGLI 182 (416)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 32 22555666555443
No 84
>PHA02764 hypothetical protein; Provisional
Probab=67.51 E-value=47 Score=29.88 Aligned_cols=27 Identities=11% Similarity=-0.084 Sum_probs=19.7
Q ss_pred eccCCchHHHHH-HHHhhhhhhhhhhHHH
Q 024688 25 LESKGEWWHAGF-HLTTAIVGPTILTLPY 52 (264)
Q Consensus 25 ~~~~~s~~~a~~-~l~~~~iG~GiL~LP~ 52 (264)
..|+.+.+++.+ |+.+...|.++ +.|+
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~ 37 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPL 37 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHH
Confidence 467788888888 88777777765 4454
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=62.50 E-value=1.3e+02 Score=27.67 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHhhhhhhhhhhHHHHHH-hhC--hhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHH
Q 024688 37 HLTTAIVGPTILTLPYVFR-GLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYF 113 (264)
Q Consensus 37 ~l~~~~iG~GiL~LP~a~~-~~G--~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~ 113 (264)
.+..-.+|+|.|-.|-... ++| |.++.+..++.++..-..+.. +.- +.| -+|.++.++. ||+.|..+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~---~~g---G~~~~l~~~~-g~~f~~lf 72 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALA---LVG---GGYDSLSARI-GKVFGILF 72 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eee---ecC---CCHHHHHHHh-ChHHHHHH
Confidence 3555678999988876543 344 666666666666654444333 111 122 2788888755 44356433
No 86
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=59.08 E-value=1.5e+02 Score=27.34 Aligned_cols=128 Identities=10% Similarity=0.138 Sum_probs=61.0
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHH
Q 024688 36 FHLTTAIVGPTILTLPYVFRGLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYF 113 (264)
Q Consensus 36 ~~l~~~~iG~GiL~LP~a~~~~G--~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~ 113 (264)
+.+..+.+|+|-++ +..++| +-...++.++++.+..+-...+.--... .+ ..+-.|++|+-++| ++++.
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~--vT---g~~l~~~~r~~~~~-~~~~~ 81 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV--VT---GLDLAEVCREHYPK-VPRIT 81 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhee--ec---CCCHHHHHHHHCCC-chHHH
Confidence 34445567777555 223344 4445555565555544444433221111 12 23899999999998 56665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHH--HHHHHHHHhcCCCcchhhHHH
Q 024688 114 VIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM--VTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 114 ~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i--~~~i~~pls~~r~l~~l~~~S 179 (264)
..+...+...+...+-+.=.+--++.++ +.....+.++ ..++.+.+-..+..+.+..+-
T Consensus 82 ~~~~~~l~ii~~~~~e~~G~a~al~ll~-------g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~ 142 (390)
T TIGR01197 82 LWILAELAIIATDMAEVIGTAIALNLLS-------HIPLWGGVLITIVDVFLFLFLDKPGLRILEAFV 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHH
Confidence 5544443333333332222222222222 1223333332 333333444456677776663
No 87
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=57.34 E-value=66 Score=29.95 Aligned_cols=90 Identities=13% Similarity=0.265 Sum_probs=59.6
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhH
Q 024688 98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRH 177 (264)
Q Consensus 98 ~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~ 177 (264)
.+.-+..+|. ||.+++.+++++..|.+.+++....-+.+..+++. + .....|-+++ +.+.++....+++.++-
T Consensus 296 ~~Af~~~~g~-~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~---~--~~~~~~ri~~-i~~~~~G~~~~~~~vW~ 368 (416)
T PF01235_consen 296 QAAFSTVLGS-WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG---K--KAIWIYRILF-IAMVFIGAVIDLDLVWD 368 (416)
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---c--eEEEeeeehh-hhhhhhhhcccchhHHH
Confidence 3344455777 89999999999999999999999998899888721 1 1111222222 33345555567888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024688 178 INLVSLLLSLGYSFLVV 194 (264)
Q Consensus 178 ~S~~~~~~~~~~~~~ii 194 (264)
++=+++.+..+.-++.+
T Consensus 369 ~~Di~~~lmai~Nlial 385 (416)
T PF01235_consen 369 LADIANGLMAIPNLIAL 385 (416)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87777765555444433
No 88
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=53.98 E-value=2.1e+02 Score=27.60 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=33.3
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIM 140 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~ 140 (264)
...++-....|+| |-.+....+.+..+..+++-++..+.....+
T Consensus 326 p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 326 PIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAF 369 (550)
T ss_pred hHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 5667777888997 5577777778888888888887777766554
No 89
>TIGR00909 2A0306 amino acid transporter.
Probab=53.78 E-value=1.8e+02 Score=26.62 Aligned_cols=45 Identities=11% Similarity=-0.099 Sum_probs=37.3
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~ 141 (264)
...++.++..|+ ++..+..+...+.+++++.+.+...+..+..+-
T Consensus 265 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 265 PLSLVGYDLGQG-IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777787 788899999999999999999988888877664
No 90
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=53.51 E-value=2.1e+02 Score=27.30 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=45.5
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccc-CCCCchhhHHHHHHHHHHHHHhcCCCcch
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PNGSLKLYEFIAMVTVVMIVLSQLPTFHS 174 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~~i~~pls~~r~l~~ 174 (264)
-|+-++++.-|+ +| .++|+...+...+....-+=.....+..-++... -+.....+.-+++...+++-+|...-+++
T Consensus 163 l~pl~g~~~~g~-~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~k 240 (485)
T PF02028_consen 163 LYPLLGDRINGP-LG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITVIFTISAVSGLDK 240 (485)
T ss_dssp CHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhhcCCcccCc-ch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 466666666666 67 6666655555544444444444444444333321 11122222223333444555666666644
Q ss_pred -hhHHHHHHHHHHHHHH
Q 024688 175 -LRHINLVSLLLSLGYS 190 (264)
Q Consensus 175 -l~~~S~~~~~~~~~~~ 190 (264)
.++.|.+.+...+...
T Consensus 241 GIk~LS~~n~~l~~~ll 257 (485)
T PF02028_consen 241 GIKRLSNINVYLAFALL 257 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6677666655444333
No 91
>PRK00701 manganese transport protein MntH; Reviewed
Probab=53.48 E-value=2e+02 Score=27.00 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 024688 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137 (264)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l 137 (264)
.+..|++|+-+|+++ .++..+...+.+.+..++-++=.+--+
T Consensus 94 ~~l~~~ir~~~~~~~-~~~~~~~~~l~~~~~~~~e~~G~a~al 135 (439)
T PRK00701 94 RDLAQACRDRYPRPV-VWFLWIQAELAIMATDLAEVIGAAIAL 135 (439)
T ss_pred CCHHHHHHHHCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999954 466666555555555555444333333
No 92
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=44.53 E-value=2.7e+02 Score=26.13 Aligned_cols=209 Identities=12% Similarity=0.057 Sum_probs=102.5
Q ss_pred CchHHHHHHHHhhhhhhh-hhhHHHHHHhhChhHHHHHHHH-HHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhC
Q 024688 29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTV-MGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG 106 (264)
Q Consensus 29 ~s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G~v~g~i~l~~-~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G 106 (264)
+|-.+=+...+.+.+|.| +.-.||-..+-|= |..++.. ++.+..=--.++.|-.-...-.+....+|+++.. +
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGG--gAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGG--GAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCc--chHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 345566677788888876 6678998888872 2222222 2222222222333322110000112336776665 4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccc---CC--------------CCchhhHHHHHH---HHHHHHH
Q 024688 107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY---PN--------------GSLKLYEFIAMV---TVVMIVL 166 (264)
Q Consensus 107 ~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~---~~--------------~~~~~~~~~~i~---~~i~~pl 166 (264)
|+ . .......+...+..+.-|.++.|=.+..+....+ ++ +......|.+++ ...++-.
T Consensus 84 ~~-~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~ 161 (439)
T COG0733 84 KK-W-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSR 161 (439)
T ss_pred cc-c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 43 3 4445555666677777788887776666554322 10 011112221211 1222333
Q ss_pred hcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCccccCCchhh---hhhHHHHHHHHHHHh--ccCch
Q 024688 167 SQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAP-PKDYSLESSKSAR---IFSAFTSISIIAAIF--GNGIL 240 (264)
Q Consensus 167 s~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~faf--~~~~~ 240 (264)
.-.|-+.+..++-+...+..+ ++.++.++..+ +.. ..++-+. ++.++ ......++|...|+. |-+.+
T Consensus 162 GV~~GIEk~~kimMP~Lfvl~---i~Lvi~~~tLp---GA~~G~~f~l~-PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~m 234 (439)
T COG0733 162 GVKKGIEKANKIMMPLLFVLF---IILVIRAVTLP---GAMEGLKFLFK-PDFSKLTDPKVWLAALGQAFFSLSLGFGIM 234 (439)
T ss_pred hHHhhHHHHHHHHHHHHHHHH---HHHHHHHHcCc---cHHHHHHHHhc-CCHHHcCchhhHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665554222 12333444322 100 0011111 11111 124688999999999 77777
Q ss_pred HHHHHhccccc
Q 024688 241 PEIQLQFLDIG 251 (264)
Q Consensus 241 ~~i~~~m~~p~ 251 (264)
.+.-+.++|.+
T Consensus 235 itYsSYL~k~~ 245 (439)
T COG0733 235 ITYSSYLSKKS 245 (439)
T ss_pred HHHHhhcCccc
Confidence 77777777765
No 93
>PRK10484 putative transporter; Provisional
Probab=41.74 E-value=3.2e+02 Score=26.07 Aligned_cols=155 Identities=5% Similarity=-0.085 Sum_probs=77.4
Q ss_pred eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688 24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA 102 (264)
Q Consensus 24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~ 102 (264)
.-.|+-+++-..+.+..+.++ ...++.|-...+.|+...... ...........+++.+-.++ .+ ..|..|.-+
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~p~~~r---~~--~~T~~e~l~ 108 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWE-VTAAIALIILALIFLPRYLK---SG--ITTIPDFLE 108 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHHh---cC--CccHHHHHH
Confidence 346777788777777777665 567788887777885431111 11111111223333333332 33 459999999
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHhhcccCCCCchhh--HH--HHHHHHHHHHHhcCCCcchhhH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAIL-LAGECLQIMYSDLYPNGSLKLY--EF--IAMVTVVMIVLSQLPTFHSLRH 177 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i-~~~~~l~~~~~~~~~~~~~~~~--~~--~~i~~~i~~pls~~r~l~~l~~ 177 (264)
+-||++ .+.+......+......+...+ ..+-.+..++.. ..-.+.+.. .+ .++..++.+--+..--++...+
T Consensus 109 ~Ryg~~-~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~-~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~ 186 (523)
T PRK10484 109 ERYDKT-TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV-SELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAV 186 (523)
T ss_pred HhcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 999987 5555554433332222222222 223333333210 000012211 11 1222344466666777888888
Q ss_pred HHHHHHHHH
Q 024688 178 INLVSLLLS 186 (264)
Q Consensus 178 ~S~~~~~~~ 186 (264)
+..+=.+..
T Consensus 187 TD~iQ~vim 195 (523)
T PRK10484 187 SDTINGIGL 195 (523)
T ss_pred HHHHHHHHH
Confidence 876665433
No 94
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=40.70 E-value=1.8e+02 Score=27.20 Aligned_cols=81 Identities=11% Similarity=0.063 Sum_probs=50.8
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688 103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (264)
Q Consensus 103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~ 182 (264)
..+|. ||.+++.+++.+..|.+.+++....-..+..++.. +. ...|-+++. +..++...-+++..+.++=+.
T Consensus 328 ~~~g~-~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~----~~--~~~~r~~~~-~~~~~g~~~~~~~vw~~~D~~ 399 (425)
T TIGR00835 328 YGLGS-FGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGN----KK--VKLYRLVFL-AAVFVGAFLSLDLVWNLADLS 399 (425)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----Cc--cceeeehhh-HHHHHHHHhhHHHHHHHHHHH
Confidence 34676 89999999999999999999998888888877531 11 112222222 223333334566666666555
Q ss_pred HHHHHHHHH
Q 024688 183 LLLSLGYSF 191 (264)
Q Consensus 183 ~~~~~~~~~ 191 (264)
+....+.-+
T Consensus 400 ~~lm~i~Nl 408 (425)
T TIGR00835 400 MGLMAIPNL 408 (425)
T ss_pred HHHHHHHHH
Confidence 554444333
No 95
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=38.77 E-value=57 Score=31.74 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=56.1
Q ss_pred hhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhcc-ccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 024688 47 ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCE-KAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGV 125 (264)
Q Consensus 47 iL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~-~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~ 125 (264)
-|=++|...++|...|.+++.+...++.-|..=-.....+.. +.|- .|--+.+ ..|+..| -...+...+.+.-+
T Consensus 50 flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis~-slg~efg-gsigiIy~f~~aVa 124 (643)
T KOG2083|consen 50 FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLISR-SLGPEFG-GSIGIIYAFANAVA 124 (643)
T ss_pred hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEEe-ccccccc-chhHHHHHHHHHHH
Confidence 356899999999999999888777666655544433333311 1121 2322222 3444444 33344444445556
Q ss_pred HHHHHHHhhhhHHHHhhcc
Q 024688 126 GIGAILLAGECLQIMYSDL 144 (264)
Q Consensus 126 ~i~y~i~~~~~l~~~~~~~ 144 (264)
|.-|++=.++.+.+++..+
T Consensus 125 ~am~~vgfaEsv~~l~~~~ 143 (643)
T KOG2083|consen 125 TAMYVVGFAESVAHLFETE 143 (643)
T ss_pred HHHhhhhHHHHHHHHHHhc
Confidence 6678888889988888654
No 96
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=34.92 E-value=3.8e+02 Score=24.97 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=38.8
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~ 141 (264)
...++.+..+|+ |+..+..+...+..+++..+++...++.+..+-
T Consensus 265 ~~~~~~~~~~g~-~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a 309 (468)
T TIGR03810 265 SMAYVLEHMVGT-WGAVLINIGLIISILGAWLSWTLLPAEIPLLMA 309 (468)
T ss_pred hHHHHHHHHcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899998 788999999999999999999999988876654
No 97
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=31.67 E-value=4.6e+02 Score=24.97 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=50.1
Q ss_pred chHHHHHHHHhhhhhhh-hhhHHHHHHhhCh----hHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 30 EWWHAGFHLTTAIVGPT-ILTLPYVFRGLGW----GLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 30 s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G~----v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
|..+-.+..+...+|.| +.-.|+-..+-|= ++=.+.++++++=..+.=..+.+..++ +. ..-|++++...
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~----~~-~~~~~~~~p~~ 80 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRS----GP-IGAWKRLCPIF 80 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----TS-HHHS-HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cc-ccccccccccc
Confidence 45667778889999988 8999998776662 222233333333333433445555443 21 22565665543
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 024688 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIM 140 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~ 140 (264)
-| .| ....+..+..++-|.++.+..+..+
T Consensus 81 ~g--iG-----~~~~~~~~~~~~yy~vi~~w~l~Y~ 109 (523)
T PF00209_consen 81 KG--IG-----YAMVLISFLIAIYYSVIVAWALYYF 109 (523)
T ss_dssp HT--HH-----HH---HHHHHHHHHHHHHHHHHHHH
T ss_pred cc--cc-----ccccccccccccccccccccccccc
Confidence 33 23 2233333444455555555544443
No 98
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=31.31 E-value=4.7e+02 Score=24.94 Aligned_cols=117 Identities=11% Similarity=0.062 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 024688 61 LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS-GWMFYFVIFIQTAINTGVGIGAILLAGECLQI 139 (264)
Q Consensus 61 ~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~-~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~ 139 (264)
++...++.++++..++.++-..-.....+. ...+.+......+.. ++++.+ .+.. ...+..+++...|+...
T Consensus 343 psl~~~~wf~ifGg~al~~~~~g~~~~~~~--~~~g~~~a~~~~l~~lP~~~i~-~~~~----lil~~~f~vTs~DS~~~ 415 (485)
T PF02028_consen 343 PSLFCFLWFSIFGGYALYLQLSGAGDLAAA--NEQGPEAALFAFLEQLPLSKIL-SILF----LILIFIFFVTSADSATY 415 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTSS-HHHH--HHH-HHHHHHHHHHTSTTHHHH-HHHH----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCchHHhhHhhhhhhHHHH--hhcchhhHHHHHHHHhhHHHHH-HHHH----HHHHHHHHHhcccHHHH
Confidence 445556667777777776654321110000 112444444444442 244222 2222 22345577777888877
Q ss_pred HhhcccCCC-----CchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 024688 140 MYSDLYPNG-----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL 184 (264)
Q Consensus 140 ~~~~~~~~~-----~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~ 184 (264)
.+...+.++ ...+..|.++..++-+-+-....++.++-++.++-+
T Consensus 416 ~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l 465 (485)
T PF02028_consen 416 VLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL 465 (485)
T ss_dssp HHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 776654321 235566766555444444445668888888877765
No 99
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=30.62 E-value=4.5e+02 Score=24.51 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 024688 97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (264)
Q Consensus 97 y~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~ 141 (264)
..++++..+|+ ++..+..+...+..+++..+++...+..+..+-
T Consensus 270 ~~~~~~~~~g~-~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ama 313 (473)
T TIGR00905 270 MAAVLEMIVGK-WGAVLISLGLIISVLGSLLSWTMLAAEVPFSAA 313 (473)
T ss_pred HHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999 788889999999999999999888877766653
No 100
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=29.08 E-value=1e+02 Score=18.07 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=16.3
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHH
Q 024688 54 FRGLGWGLGFTCLTVMGFVTFYSY 77 (264)
Q Consensus 54 ~~~~G~v~g~i~l~~~~~~~~~s~ 77 (264)
..+..+..|+.+++++.++..|+.
T Consensus 12 YEr~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 12 YERGWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445567777777777877775
No 101
>PRK14749 hypothetical protein; Provisional
Probab=26.47 E-value=98 Score=17.30 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 024688 59 WGLGFTCLTVMGFVTF 74 (264)
Q Consensus 59 ~v~g~i~l~~~~~~~~ 74 (264)
|++|+.+.+.+++++.
T Consensus 6 WiLG~~lAc~f~ilna 21 (30)
T PRK14749 6 WFVGILLMCSLSTLVL 21 (30)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888887764
No 102
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=26.15 E-value=5.9e+02 Score=24.42 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=57.2
Q ss_pred ccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcch
Q 024688 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS 174 (264)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~ 174 (264)
.|+.|....=++.+.-|.+..+...+..+.-.++.+.=.|..+..++. .....-+++..++++.-...--++.
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-------v~~~vgv~ig~ilm~~Yvv~GGM~a 176 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-------VPYHVGVVIGGILMMVYVVLGGMKA 176 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-------CCceeehhhHhHHHHHHHHhcchhh
Confidence 499998877777656888888877777777777777777777776653 1122224455566666667788888
Q ss_pred hhHHHHHHHH
Q 024688 175 LRHINLVSLL 184 (264)
Q Consensus 175 l~~~S~~~~~ 184 (264)
..|+..+=-+
T Consensus 177 tTW~Qi~qav 186 (529)
T COG4147 177 TTWVQIIQAV 186 (529)
T ss_pred hhHHHHHHHH
Confidence 9998876543
No 103
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=26.04 E-value=5.7e+02 Score=24.17 Aligned_cols=125 Identities=11% Similarity=0.114 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHcch--hccc-cCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024688 58 GWGLGFTCLTVMGFVTFYSYYLMSKVLD--HCEK-AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134 (264)
Q Consensus 58 G~v~g~i~l~~~~~~~~~s~~lL~~~~~--~~~~-~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~ 134 (264)
|.+..+-..+=.-++|..|..++.-.-. ..+. .|.. --++.-+..+|. ||.+++.+.+.+..|.+.+++....-
T Consensus 299 Glv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~--ltq~A~~~~~g~-~G~~fv~i~l~lFafTTIlg~yyyge 375 (452)
T COG1115 299 GLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAA--LTQAAFSSHLGS-WGSYFVAIALFLFAFTTILGWYYYGE 375 (452)
T ss_pred hHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHH--HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333344566666666554321 1000 1111 122334566788 89999999999999999999998888
Q ss_pred hhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHH
Q 024688 135 ECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSF 191 (264)
Q Consensus 135 ~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~ 191 (264)
.+++.+.. + ..-...+-+ ..+..+++....+++..+-++=+........-+
T Consensus 376 ~~~~fl~~----~-k~~~~~~r~-~~l~~v~~Ga~~~l~~vW~laD~~~glMai~NL 426 (452)
T COG1115 376 KNIEFLFG----S-KKAILLYRL-IVLAMVFLGAVLSLDLVWNLADLFMGLMAIPNL 426 (452)
T ss_pred HHHHHHhC----C-chHHHHHHH-HHHHHHHHhccccHHHHHHHHHHhchHHHHHHH
Confidence 88887752 1 111122222 234445666667777777776666654444333
No 104
>PRK09950 putative transporter; Provisional
Probab=25.50 E-value=6.1e+02 Score=24.36 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=41.7
Q ss_pred cccHHHHHHHHhCCc----hhHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHhhcc-cCCCCchhhHHHHHHHHHHHHHh
Q 024688 94 HIRFRELAADVLGSG----WMFYFVIFIQ-TAINTGVGIGAILLAGECLQIMYSDL-YPNGSLKLYEFIAMVTVVMIVLS 167 (264)
Q Consensus 94 ~~sy~~l~~~~~G~~----~g~~~~~i~i-~~~~~g~~i~y~i~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~~i~~pls 167 (264)
..+.++..+-.+|+| +| .++|+.. +...+|.+.+ +=....++..-++.. .-+.+...+..+++...+++-+|
T Consensus 166 pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatS-LGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S 243 (506)
T PRK09950 166 GLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTIS-LVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIFCLS 243 (506)
T ss_pred CCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 457888888888753 46 5666544 4444444433 333333343333322 11112222222333344445555
Q ss_pred cCCCc-chhhHHHHHHHH
Q 024688 168 QLPTF-HSLRHINLVSLL 184 (264)
Q Consensus 168 ~~r~l-~~l~~~S~~~~~ 184 (264)
...-+ |-.+++|.+...
T Consensus 244 ~~~Gl~kGIk~LS~~N~~ 261 (506)
T PRK09950 244 SYIGIDNGLQRLSKMVGW 261 (506)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 44444 445555554443
No 105
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=24.36 E-value=2.2e+02 Score=21.81 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=34.3
Q ss_pred chHHHHHHHHhhhhhhhhhhHHHHHHhhChh-HHHHHHHHHH-HHHHHHHHHHHHcch
Q 024688 30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWG-LGFTCLTVMG-FVTFYSYYLMSKVLD 85 (264)
Q Consensus 30 s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v-~g~i~l~~~~-~~~~~s~~lL~~~~~ 85 (264)
++....--+. +.+=.|-+++|-.++++|.+ +|...|.+.+ .+..-+..+-.++..
T Consensus 65 ~~idlA~FlT-g~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~iIF~~ii~~f~~f~ 121 (131)
T KOG2174|consen 65 ACIDLAKFLT-GAIVVSAFALPIVLAHAGLIGWGACALVLTGNSIIFLVIILFFLIFG 121 (131)
T ss_pred HHHHHHHHHh-cchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCchhHHHHHHHHHHHc
Confidence 3444443333 34445667999999999977 5777888777 454444444444444
No 106
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=24.23 E-value=5.9e+02 Score=23.76 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=37.1
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~ 141 (264)
+..|..|+-++|+++ ++..+...+....++++-++-.+--++-++
T Consensus 78 ~laq~ir~~y~~~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 78 GLAEAIRERYLPGLG-ILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred cHHHHHHHHccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 889999999999766 888888888888888888777777776654
No 107
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.08 E-value=1.1e+02 Score=17.15 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 024688 59 WGLGFTCLTVMGFVTF 74 (264)
Q Consensus 59 ~v~g~i~l~~~~~~~~ 74 (264)
|++|+.+.+.+++++.
T Consensus 6 WilG~~lA~~~~v~~a 21 (30)
T TIGR02106 6 WILGTLLACAFGVLNA 21 (30)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888887764
No 108
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.03 E-value=52 Score=29.74 Aligned_cols=23 Identities=9% Similarity=-0.037 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHH
Q 024688 160 TVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 160 ~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
+++++|| ++++++.-.|-..+|.
T Consensus 203 aivLFPL-WP~~mR~gvyY~sig~ 225 (372)
T KOG2927|consen 203 AIVLFPL-WPRRMRQGVYYLSIGA 225 (372)
T ss_pred HHHhccc-CcHHHhcceeeeecch
Confidence 3444555 7777776544433333
No 109
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=23.78 E-value=6.3e+02 Score=23.89 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=81.0
Q ss_pred ccCCchHHHHHHHHhhhhhhh-hhhHHHHHHhhChhHHHHHHHHHHHHH---HHHHHHHHHcchhccccCcccccHHH--
Q 024688 26 ESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVT---FYSYYLMSKVLDHCEKAGRRHIRFRE-- 99 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G~v~g~i~l~~~~~~~---~~s~~lL~~~~~~~~~~~~~~~sy~~-- 99 (264)
+++-|-++|.+.-+.+-+|+| |-+..-|.+-.| ..++.+|=+.+++. -|.=..|...++.-++.| .|..
T Consensus 60 ~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G----~~~GGP 134 (452)
T COG1115 60 KGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDG----EYRGGP 134 (452)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCC----CCcCCh
Confidence 456689999999999999988 556777777666 34566665555544 444444554444311111 1211
Q ss_pred --HHHHHhCCchhHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchh
Q 024688 100 --LAADVLGSGWMFYFVIFIQTAINTG--VGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL 175 (264)
Q Consensus 100 --l~~~~~G~~~g~~~~~i~i~~~~~g--~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l 175 (264)
-.++-+|.||-..+..+.+. ..+| .+....-.+++.+++.+ +..... ..+.+.++.-+..+.-+++.
T Consensus 135 ~yYi~kGl~~r~l~v~FA~~li-~afg~i~n~vQ~NsIa~a~~~af-------~~~~~~-~gi~la~l~~~VI~GGi~rI 205 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFAFALI-AAFGFIGNGVQSNSIASALANAF-------GIPPLV-TGIVLALLVALVIFGGIKRI 205 (452)
T ss_pred HHHHHhhcCCcHHHHHHHHHHH-HHHHhhcchhhHHHHHHHHHHhc-------CCcHHH-HHHHHHHHHHHHHHcchHHH
Confidence 23345555442222222222 2222 44444444444444432 222222 34444555555556777777
Q ss_pred hHHHHHHH-HHHHHHHHHHH
Q 024688 176 RHINLVSL-LLSLGYSFLVV 194 (264)
Q Consensus 176 ~~~S~~~~-~~~~~~~~~ii 194 (264)
..++-.-+ ++.++|+...+
T Consensus 206 a~v~~~vVPfMA~~Yi~~~~ 225 (452)
T COG1115 206 AKVSSKVVPFMAILYVLVAL 225 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77765444 45555655433
No 110
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=23.04 E-value=2.8e+02 Score=22.49 Aligned_cols=73 Identities=8% Similarity=-0.067 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 024688 109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS 186 (264)
Q Consensus 109 ~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~ 186 (264)
+|..+.-+++.+..++++..|-...++.-...... ..-...|.+++.++--.+-.+|.+.++.+-.++..+|.
T Consensus 68 ~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi-----~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~Ci 140 (173)
T PF11085_consen 68 LGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPGI-----LYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCI 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHH
Confidence 67666667777777777777766655433221100 01122233333222111124667777777777777643
No 111
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=22.96 E-value=4.6e+02 Score=24.82 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=39.8
Q ss_pred hhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchh
Q 024688 46 TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM 110 (264)
Q Consensus 46 GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g 110 (264)
.+..||..+.+..++...-.+-.+.++.++|-+.=-+..+..+ . ....|+|-+| +|. ||
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~-~--~~~~y~~gvr--~G~-~~ 310 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSV-N--QGAKYDDGVR--AGA-FG 310 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCC-c--chhHHHHHHH--HHH-HH
Confidence 3447899999999998888888888776666665444554321 1 1237877777 565 55
No 112
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=21.94 E-value=1.3e+02 Score=16.55 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 024688 59 WGLGFTCLTVMGFVTF 74 (264)
Q Consensus 59 ~v~g~i~l~~~~~~~~ 74 (264)
|++|+.+.+.+++++.
T Consensus 6 WilG~~lA~~~~i~~a 21 (28)
T PF08173_consen 6 WILGVLLACAFGILNA 21 (28)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778877777777664
No 113
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=21.47 E-value=7.5e+02 Score=23.96 Aligned_cols=140 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-cchhccccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 024688 59 WGLGFTCLTVMGFVTFYSYYLMSK-VLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137 (264)
Q Consensus 59 ~v~g~i~l~~~~~~~~~s~~lL~~-~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l 137 (264)
.++++...+.++++..+..++..+ .... .+.. +-++..+.+|+- +..+=..-.........+..+.+...|+.
T Consensus 353 ~~P~~~~~~wftVfG~~ai~~~~~~~~~~---~~~~--~~~~~e~alf~~-l~~lPl~~v~~~~~~~~i~~FfiTsaDS~ 426 (537)
T COG1292 353 LIPTLFTWLWFTVFGNYALYLIINGGGGI---LGLV--TTEGPETALFQV-LSHLPLGTLTSLLALLVIAIFFVTSADSG 426 (537)
T ss_pred HHhHHHHHHHHHHHhhhHHHHHhccccch---hhhh--hccchhhHHHHH-HHhCCHHHHHHHHHHHHHHHHHhhccchH
Q ss_pred HHHhhcccCCC-----CchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024688 138 QIMYSDLYPNG-----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205 (264)
Q Consensus 138 ~~~~~~~~~~~-----~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~ 205 (264)
..++......+ ...+..|.++..++-.-+-+.-.++.+.-.+++..+ =+..+.+++..+..+....+
T Consensus 427 s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al-PF~~vll~~~~sl~k~l~~d 498 (537)
T COG1292 427 SYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL-PFSLVLLVMMFSLIKDLKQD 498 (537)
T ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHhh
No 114
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=21.37 E-value=7e+02 Score=23.57 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=19.8
Q ss_pred cccHHHHHHHHhCCc----hhHHHHHH-HHHHHHHHHHHH
Q 024688 94 HIRFRELAADVLGSG----WMFYFVIF-IQTAINTGVGIG 128 (264)
Q Consensus 94 ~~sy~~l~~~~~G~~----~g~~~~~i-~i~~~~~g~~i~ 128 (264)
..+.++..+-.+|+| +| .++|+ +++...+|...+
T Consensus 119 ~~~iss~~~pllG~~~~g~~g-~~ID~l~v~ati~G~ats 157 (453)
T TIGR00842 119 PLRLSSALVPLLGERVNGPIG-KAIDIMALVATLFGVATS 157 (453)
T ss_pred CCchhhhhhcccCCcccCccH-HHHHHHHHHHHHHHHHhH
Confidence 347777777777743 56 55554 455555555443
Done!