Query 024688
Match_columns 264
No_of_seqs 114 out of 1109
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.3 6.6E-11 2.3E-15 108.1 16.0 223 26-261 7-230 (445)
2 3gia_A Uncharacterized protein 99.0 1.5E-08 5.3E-13 92.3 17.3 221 26-262 5-228 (444)
3 4djk_A Probable glutamate/gamm 98.6 1.1E-06 3.8E-11 81.4 14.9 225 25-262 9-241 (511)
4 2jln_A MHP1; hydantoin, transp 98.4 2.3E-05 7.9E-10 72.9 18.1 233 1-252 1-239 (501)
5 3dh4_A Sodium/glucose cotransp 93.8 4.2 0.00014 37.6 18.1 148 26-188 19-169 (530)
6 2xq2_A Sodium/glucose cotransp 92.2 7.7 0.00026 36.3 18.5 147 26-186 48-196 (593)
7 2wsw_A BCCT family betaine/car 63.4 91 0.0031 28.6 12.3 90 93-186 177-271 (509)
8 3l1l_A Arginine/agmatine antip 60.3 86 0.0029 27.3 13.6 46 95-141 260-305 (445)
9 3gia_A Uncharacterized protein 55.3 1E+02 0.0036 26.7 10.9 45 96-141 259-303 (444)
10 2a65_A Leutaa, Na(+):neurotran 30.1 3.2E+02 0.011 24.9 22.1 214 30-251 10-273 (519)
11 4ain_A Glycine betaine transpo 24.8 4.1E+02 0.014 24.4 12.4 23 26-48 93-115 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.29 E-value=6.6e-11 Score=108.12 Aligned_cols=223 Identities=11% Similarity=-0.015 Sum_probs=137.2
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL 105 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~ 105 (264)
+|+-+.++.++..+++++|+|++.+|...++.|. .+.+..++.+++.......+.|...+.|+.| ++-+.+++.+
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~~ 81 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG----GSYAYARRCF 81 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT----THHHHHHHHS
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CchhhHHhHc
Confidence 6778899999999999999999999999999996 4777777788888888888888877654332 5666778999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688 106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL 185 (264)
Q Consensus 106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~ 185 (264)
||.+| .++.....+.......++....++.+...++... .+.....+.+++.++...+ ..+..+...+++.+....
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i-n~~g~~~~~~~~~~~~~~ 157 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK--DPWVLTITCVVVLWIFVLL-NIVGPKMITRVQAVATVL 157 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG--SHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc--ccHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHH
Confidence 99655 7888877777666666676666666654433211 1111111112222222222 234566666666555443
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688 186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF 261 (264)
Q Consensus 186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~ 261 (264)
.+...+++++..+.....++. ...++. .....+..+..++....|+| +.......-+|+|||+ |+.+|+...
T Consensus 158 ~i~~~~~~~i~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~-r~ip~a~~~ 230 (445)
T 3l1l_A 158 ALIPIVGIAVFGWFWFRGETY-MAAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIATIG 230 (445)
T ss_dssp HHHHHHHHHHTTSTTCCCCCC-CCC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhc-ccccCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-ccccHHHHH
Confidence 333322222222221111110 011111 11112346788999999999 9999999999999995 466666544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.00 E-value=1.5e-08 Score=92.35 Aligned_cols=221 Identities=9% Similarity=-0.018 Sum_probs=134.9
Q ss_pred ccCCchHHHHHHHHhhhhhhhhhhHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
+|+-+.++..+..+++++|+|++.+|.. ...+|. .+.+..++.+++.......+.|...+.|+.| ..-+.+++.
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G----g~y~~~~~~ 79 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA----GPIAFIHKA 79 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT----THHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----cHHHhHHHH
Confidence 6778899999999999999999988744 455665 5677777788888888888888877754332 556778889
Q ss_pred hCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 105 ~G~~~-g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
+|+++ +.. +.....+.....+..+....++.+...++.. +.........+++.++.. +...+..+...+++.+..
T Consensus 80 ~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~in~~g~~~~~~~~~~~~ 155 (444)
T 3gia_A 80 IGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAP--INTFNIAITEIGIVAFFT-ALNFFGSKAVGRAEFFIV 155 (444)
T ss_dssp HCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHH
T ss_pred hCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Confidence 99963 323 3444555555556667777777776655321 111111111122222222 223345666666665555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS 262 (264)
Q Consensus 184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~ 262 (264)
...+...++.++..+.....+ ++... .....+.+++.++....|+| +.......-+|+|||+ |+.+|+...+
T Consensus 156 ~~~i~~~~~~ii~~~~~~~~~-----~~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~-r~ip~ai~~~ 228 (444)
T 3gia_A 156 LVKLLILGLFIFAGLITIHPS-----YVIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK-KNVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCGG-----GTSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChh-----hcCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc-cchhHHHHHH
Confidence 433333333333333322111 11111 11223346788889999999 9999999999999996 4677665443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.57 E-value=1.1e-06 Score=81.42 Aligned_cols=225 Identities=9% Similarity=0.029 Sum_probs=116.3
Q ss_pred eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcch--hccccCcccccHHHHH
Q 024688 25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLD--HCEKAGRRHIRFRELA 101 (264)
Q Consensus 25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~--~~~~~~~~~~sy~~l~ 101 (264)
.+|+-++++.+...++.++| +.++|. .+..|.. +++..++.+++. ......+.|... ..| .| ..-..+
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G----G~y~~~ 79 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG----GVFAWV 79 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------CHHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----ChhhhH
Confidence 46788899999999999986 557776 4667753 233333333222 336666777766 644 33 556677
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh--hcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688 102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY--SDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179 (264)
Q Consensus 102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S 179 (264)
++.+|+++| .++.....+.......++....++.+...+ ..+. ...+....+.+++.++...+. .+..+...++.
T Consensus 80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~in-~~g~~~~~~~~ 156 (511)
T 4djk_A 80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN-EDPITKTIAALIILWALALTQ-FGGTKYTARIA 156 (511)
T ss_dssp HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT-SCSSHHHHHHHHHHHHHHHHH-HTCSSSHHHHT
T ss_pred HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cCcHHHHHHHHHHHHHHHHHH-HhChHHHHHHH
Confidence 889999766 777777777666666666666666664432 1111 112222222222222223332 34556666665
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCCCCCCCCccccC-CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688 180 LVSLLLS-LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN 256 (264)
Q Consensus 180 ~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~ 256 (264)
.+..... +...++++...+.....++....+.+... .++....+...++...+|+| |.......-+|+|||+ |+.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~-k~ip 235 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPG-RDYP 235 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT-TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcc-cchh
Confidence 5543221 11111222222211111110000011100 00100113445677889999 9999999999999996 5777
Q ss_pred eeeecc
Q 024688 257 RIQTFS 262 (264)
Q Consensus 257 ~~~~~~ 262 (264)
|+...+
T Consensus 236 ~ai~~~ 241 (511)
T 4djk_A 236 LAMLLL 241 (511)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.36 E-value=2.3e-05 Score=72.89 Aligned_cols=233 Identities=11% Similarity=-0.007 Sum_probs=128.6
Q ss_pred CC-CCCCCCCcccccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHh-hChhHHHHHHHHHHHHHHHHHH
Q 024688 1 MA-QPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRG-LGWGLGFTCLTVMGFVTFYSYY 78 (264)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~-~G~v~g~i~l~~~~~~~~~s~~ 78 (264)
|+ +|++.||.+| ++|..-....+|+.++++-+..-+...++.+...+...+.. .++..+++.+++-.++...-..
T Consensus 1 m~~~~~~~~~~~e---~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~ 77 (501)
T 2jln_A 1 MNSTPIEEARSLL---NPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLF 77 (501)
T ss_dssp -------CCCBCC---CSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccc---cCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44 4556566555 33333333346777777666666666666555555544443 3345566555555544443344
Q ss_pred HHHHcchhccccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHH
Q 024688 79 LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM 158 (264)
Q Consensus 79 lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i 158 (264)
++.+.-.+ . ..+|..+.|..||+ +|..+..+...+.++|-........++.+..++.... + ......++++
T Consensus 78 l~~~~G~~---~---Gl~~~v~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g-~~~~~v~~~i 148 (501)
T 2jln_A 78 FTQSAAIR---W---GINFTVAARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G-FTNLPLWIVI 148 (501)
T ss_dssp HHTHHHHH---H---CCCHHHHTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCCHHHHHHH
T ss_pred HHhHHHhh---c---CCChhhhhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-cchHHHHHHH
Confidence 44333332 2 34799999999999 5989999999888888888888888998888764321 0 1123445566
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CCCCCCCccccCCchhhhhhHHHHHHHH-HHHh
Q 024688 159 VTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFS-KNAPPKDYSLESSKSARIFSAFTSISII-AAIF 235 (264)
Q Consensus 159 ~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf 235 (264)
+.++.+++.+. .++.+.++..+.....++..+.+.+..+.. +.+ ++ ..+.. +....+.+..++... .+.-
T Consensus 149 ~~~l~~~~~~~-G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~----~~~~~--~~~~~~~f~~ai~~~~~~~~ 221 (501)
T 2jln_A 149 FGAIQVVTTFY-GITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGE----VMSMG--GENPGMPFSTAIMIFVGGWI 221 (501)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH----HTTCC--CSSCCSCHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh----hhccC--CccchHHHHHHHHHHHHHHH
Confidence 67777777754 578888877776653333333232222222 110 00 00000 001122344444332 2222
Q ss_pred -ccCchHHHHHhcccccc
Q 024688 236 -GNGILPEIQLQFLDIGH 252 (264)
Q Consensus 236 -~~~~~~~i~~~m~~p~~ 252 (264)
...+.++..+++|+|+.
T Consensus 222 ~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 222 AVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHTTTHHHHTTBCCCTT
T ss_pred HHHhccCcccccCCCCcc
Confidence 44788999999988754
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=93.77 E-value=4.2 Score=37.58 Aligned_cols=148 Identities=10% Similarity=0.138 Sum_probs=81.6
Q ss_pred ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHH-HHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFT-CLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD 103 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i-~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~ 103 (264)
-|+-+++-..+.+..+.++ ...+++|-...+.|+..... +...++ .......+.+..++ .+ ..|..|.-++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~--~~i~~~~~~p~~~~---~~--~~T~~e~l~~ 91 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAIT--LIIVGKYFLPIFIE---KG--IYTIPEFVEK 91 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHH--HHHHHHHTHHHHHH---TT--CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHH---cC--CccHHHHHHH
Confidence 5677788788877777766 56889999988888643211 111111 11112222333333 33 4599999999
Q ss_pred HhCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688 104 VLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS 182 (264)
Q Consensus 104 ~~G~~~g~~~~~i~i~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~ 182 (264)
-||++ .|.+..+...+ +.+..+.+.+...+..++.++ +.+....+++..+++.--+..--++...++..+=
T Consensus 92 Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~-------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 92 RFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETIL-------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp HTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99996 66666654433 222223333333445555553 2444444566667777777888888888887766
Q ss_pred HHHHHH
Q 024688 183 LLLSLG 188 (264)
Q Consensus 183 ~~~~~~ 188 (264)
.+..+.
T Consensus 164 ~~im~~ 169 (530)
T 3dh4_A 164 VFFLVL 169 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=92.15 E-value=7.7 Score=36.32 Aligned_cols=147 Identities=10% Similarity=0.125 Sum_probs=78.1
Q ss_pred ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
-|+-+++-..+.+..+.++ ...+++|-...+.|+........ .++........+.+-.++ .+ ..|..|.-++=
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r---~~--~~T~~e~l~~R 121 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KG--IYTIPEFVEKR 121 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH---TT--CCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh---CC--CCCcHHHHHHH
Confidence 4666788788888766665 56679998888888642211110 000001112222333333 33 45999999999
Q ss_pred hCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688 105 LGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~ 183 (264)
||++ .|.+..+...+ +.+......+...+..++.++ +.+....+++..+++...+..--++...++-.+=.
T Consensus 122 fg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~-------Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~ 193 (593)
T 2xq2_A 122 FNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETIL-------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 193 (593)
T ss_dssp TCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred ccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9985 55666554332 233222333333455566554 23344444556666677777777888877766555
Q ss_pred HHH
Q 024688 184 LLS 186 (264)
Q Consensus 184 ~~~ 186 (264)
+..
T Consensus 194 iim 196 (593)
T 2xq2_A 194 FFL 196 (593)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 7
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=63.41 E-value=91 Score=28.57 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=45.3
Q ss_pred ccccHHHHH-HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhc
Q 024688 93 RHIRFRELA-ADVLGSGWMFYFVIFIQTAINTGVGIGAILLA---GECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ 168 (264)
Q Consensus 93 ~~~sy~~l~-~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~---~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~ 168 (264)
|..=|+-++ ++.-|+ +|+.+=.++++...+|.+.+.=.-. +.-++.++. . |+ ....+.-+++....++-+|.
T Consensus 177 ss~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfG-i-~~-~~~~qi~ii~vit~~~~~Sa 252 (509)
T 2wsw_A 177 SSTLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFG-I-PH-TLQLDAIIISCWILLNAICV 252 (509)
T ss_dssp GGGCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CC-ccHHHHHHHHHHHHHHHHHH
Confidence 334677788 788888 7854444566666666655532222 223333332 1 22 22222222333344455666
Q ss_pred CCCc-chhhHHHHHHHHHH
Q 024688 169 LPTF-HSLRHINLVSLLLS 186 (264)
Q Consensus 169 ~r~l-~~l~~~S~~~~~~~ 186 (264)
..-+ |-.+++|.+-....
T Consensus 253 ~sGl~kGIk~LS~~N~~la 271 (509)
T 2wsw_A 253 AFGLQKGVKIASDVRTYLS 271 (509)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 5566 55666665544433
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=60.35 E-value=86 Score=27.26 Aligned_cols=46 Identities=28% Similarity=0.153 Sum_probs=39.7
Q ss_pred ccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 024688 95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (264)
Q Consensus 95 ~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~ 141 (264)
..+.++.+..+|+ |+..++.+...+..+++..+++...+..+..+-
T Consensus 260 ~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a 305 (445)
T 3l1l_A 260 SPFGDAARMALGD-TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_dssp CTHHHHHHHHHCT-THHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999 688999999999999999999888888776654
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=55.34 E-value=1e+02 Score=26.71 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=37.4
Q ss_pred cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 024688 96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY 141 (264)
Q Consensus 96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~ 141 (264)
...++.+..+|+ ++..+..+...+..+++..+.+...+..+..+-
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a 303 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVAYSLA 303 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888887 788899999999999999898888877776654
No 10
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=30.11 E-value=3.2e+02 Score=24.92 Aligned_cols=214 Identities=11% Similarity=0.019 Sum_probs=100.7
Q ss_pred chHHHHHHHHhhhhhhh-hhhHHHHHHhhC----hhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688 30 EWWHAGFHLTTAIVGPT-ILTLPYVFRGLG----WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV 104 (264)
Q Consensus 30 s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G----~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~ 104 (264)
|-.+=++..+.+.+|.| +.=.||-..+-| .++=++.++++++=..+.=..+.|-..+..+.+ ....|.+++
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~-~i~a~~~l~--- 85 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGT-TPAIFYLLW--- 85 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCS-HHHHHHHHS---
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCC-HHHHHHHhc---
Confidence 55677888889999988 888999988888 333333444444333333333444211000011 122444443
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCC-----------------------------------CC
Q 024688 105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-----------------------------------GS 149 (264)
Q Consensus 105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~-----------------------------------~~ 149 (264)
.++.. ..+....++..+..++-|.++.+-.+..++..+..+ +.
T Consensus 86 -~~~~~-~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~ 163 (519)
T 2a65_A 86 -RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILK 163 (519)
T ss_dssp -CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCC
T ss_pred -CCcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccC
Confidence 22111 233444445555555566666555444433322100 00
Q ss_pred --chhhHHHHHHHHHHHHHhcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCC-CCCccccCCchhhh---
Q 024688 150 --LKLYEFIAMVTVVMIVLSQLPTF-HSLRHINLVSLLLSLGYSFLVVGACINAGFSK-NAP-PKDYSLESSKSARI--- 221 (264)
Q Consensus 150 --~~~~~~~~i~~~i~~pls~~r~l-~~l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~-~~~-~~~~~~~~~~~~~~--- 221 (264)
.....|.+ ...++.-++..|-+ +...+++.+-...-.+.+++.++.++..+-++ ... ..++-+ .++.++.
T Consensus 164 ~~~~~~~~~~-~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~-~Pd~s~L~~~ 241 (519)
T 2a65_A 164 PSLFAYIVFL-ITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLW-TPDFEKLKDP 241 (519)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHH-SCCTTSTTCH
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh-cCCHHHhCCH
Confidence 11122222 22333445566777 55666666555433333333334444332100 000 000001 1111111
Q ss_pred hhHHHHHHHHHHHh--ccCchHHHHHhccccc
Q 024688 222 FSAFTSISIIAAIF--GNGILPEIQLQFLDIG 251 (264)
Q Consensus 222 ~~~~~~~~~~~faf--~~~~~~~i~~~m~~p~ 251 (264)
.....|.+...|++ |.+.+...=+.+++.+
T Consensus 242 ~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~ 273 (519)
T 2a65_A 242 GVWIAAVGQIFFTLSLGFGAIITYASYVRKDQ 273 (519)
T ss_dssp HHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTS
T ss_pred HHHHHHHHHHHHHhHHHHhHHhhhhcccCCCc
Confidence 13688999999999 6666666666665544
No 11
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=24.83 E-value=4.1e+02 Score=24.43 Aligned_cols=23 Identities=9% Similarity=-0.178 Sum_probs=16.6
Q ss_pred ccCCchHHHHHHHHhhhhhhhhh
Q 024688 26 ESKGEWWHAGFHLTTAIVGPTIL 48 (264)
Q Consensus 26 ~~~~s~~~a~~~l~~~~iG~GiL 48 (264)
++.-|.++=..-+.++-+|.|++
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhe
Confidence 45555666667778888888887
Done!