Query 024689
Match_columns 264
No_of_seqs 128 out of 155
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 1.3E-84 2.9E-89 605.3 17.7 233 26-258 4-236 (307)
2 PLN02941 inositol-tetrakisphos 100.0 3.2E-66 7E-71 486.0 23.7 232 25-256 17-248 (328)
3 TIGR00768 rimK_fam alpha-L-glu 99.2 6.4E-10 1.4E-14 99.0 14.5 165 45-223 12-194 (277)
4 TIGR02144 LysX_arch Lysine bio 99.2 9.7E-10 2.1E-14 98.8 15.0 164 47-224 13-195 (280)
5 PRK10446 ribosomal protein S6 98.7 4E-07 8.7E-12 83.9 15.8 162 48-222 17-203 (300)
6 PRK01372 ddl D-alanine--D-alan 98.6 6.8E-07 1.5E-11 81.6 13.4 156 47-218 26-193 (304)
7 TIGR01205 D_ala_D_alaTIGR D-al 98.6 4.8E-07 1E-11 82.9 11.4 154 49-215 23-203 (315)
8 PF08443 RimK: RimK-like ATP-g 98.5 3.6E-07 7.9E-12 79.1 6.5 101 115-227 3-111 (190)
9 PRK02471 bifunctional glutamat 98.1 3.2E-05 6.9E-10 80.7 13.2 152 48-231 436-600 (752)
10 COG0189 RimK Glutathione synth 98.1 2.6E-05 5.7E-10 73.7 11.5 137 73-222 77-223 (318)
11 TIGR01380 glut_syn glutathione 98.1 4.7E-05 1E-09 71.2 12.9 160 48-226 22-228 (312)
12 PRK05246 glutathione synthetas 98.1 7.7E-05 1.7E-09 69.6 14.3 161 48-226 23-229 (316)
13 PRK14571 D-alanyl-alanine synt 98.1 3.3E-05 7.2E-10 70.9 11.3 146 49-215 24-182 (299)
14 PRK12458 glutathione synthetas 98.1 5.1E-05 1.1E-09 71.9 12.7 130 74-218 79-226 (338)
15 PRK12767 carbamoyl phosphate s 98.1 5.5E-05 1.2E-09 69.5 12.3 110 102-224 98-214 (326)
16 PRK06019 phosphoribosylaminoim 98.0 6.9E-05 1.5E-09 71.3 11.4 152 48-214 16-191 (372)
17 TIGR01142 purT phosphoribosylg 98.0 0.00014 3E-09 68.5 13.3 99 101-213 86-196 (380)
18 PRK07206 hypothetical protein; 98.0 9.4E-05 2E-09 70.6 12.2 101 100-213 93-208 (416)
19 PRK06849 hypothetical protein; 98.0 0.00018 3.8E-09 68.5 13.6 104 103-218 104-211 (389)
20 TIGR01161 purK phosphoribosyla 97.9 0.00014 3.1E-09 68.3 12.7 151 48-213 13-188 (352)
21 PRK09288 purT phosphoribosylgl 97.9 0.00015 3.4E-09 68.5 12.6 151 47-214 25-210 (395)
22 PRK14016 cyanophycin synthetas 97.9 8.2E-05 1.8E-09 77.3 11.5 149 48-228 164-320 (727)
23 PF13535 ATP-grasp_4: ATP-gras 97.9 2.9E-05 6.2E-10 64.6 6.3 93 112-217 1-104 (184)
24 PRK14569 D-alanyl-alanine synt 97.9 0.00022 4.7E-09 65.9 12.2 150 49-217 27-188 (296)
25 PRK01966 ddl D-alanyl-alanine 97.8 0.00026 5.7E-09 66.4 12.6 128 74-215 81-219 (333)
26 TIGR01369 CPSaseII_lrg carbamo 97.8 0.00055 1.2E-08 73.8 15.4 107 100-219 653-770 (1050)
27 PRK05586 biotin carboxylase; V 97.7 0.00044 9.6E-09 67.3 12.1 99 103-215 103-216 (447)
28 TIGR03103 trio_acet_GNAT GNAT- 97.7 0.00045 9.7E-09 69.7 12.5 147 47-227 245-401 (547)
29 PRK08462 biotin carboxylase; V 97.7 0.00032 7E-09 68.0 10.5 142 42-215 60-218 (445)
30 PRK14572 D-alanyl-alanine synt 97.7 0.00051 1.1E-08 64.9 11.5 125 74-215 88-228 (347)
31 PRK05294 carB carbamoyl phosph 97.6 0.0012 2.6E-08 71.2 14.9 100 105-217 659-768 (1066)
32 PRK00885 phosphoribosylamine-- 97.6 0.00063 1.4E-08 65.5 11.5 109 91-215 78-200 (420)
33 TIGR02068 cya_phycin_syn cyano 97.5 0.00044 9.6E-09 73.2 9.8 109 105-228 203-319 (864)
34 PRK13790 phosphoribosylamine-- 97.5 0.002 4.3E-08 61.8 13.3 136 47-216 17-164 (379)
35 PRK02186 argininosuccinate lya 97.5 0.0012 2.6E-08 69.9 12.8 94 105-213 97-198 (887)
36 TIGR00877 purD phosphoribosyla 97.5 0.0018 3.9E-08 62.1 12.7 107 91-213 80-200 (423)
37 PRK14568 vanB D-alanine--D-lac 97.5 0.0017 3.8E-08 61.1 12.0 125 74-216 90-223 (343)
38 PRK12815 carB carbamoyl phosph 97.4 0.00048 1E-08 74.4 8.3 101 100-215 654-762 (1068)
39 PF07478 Dala_Dala_lig_C: D-al 97.4 0.00013 2.8E-09 64.6 3.2 77 134-215 6-90 (203)
40 PLN02948 phosphoribosylaminoim 97.3 0.0079 1.7E-07 61.2 15.6 158 27-203 20-204 (577)
41 PLN02735 carbamoyl-phosphate s 97.2 0.0064 1.4E-07 66.2 13.8 153 49-215 600-797 (1102)
42 PRK05294 carB carbamoyl phosph 97.1 0.0032 6.9E-08 68.1 11.3 141 49-203 33-212 (1066)
43 PRK14570 D-alanyl-alanine synt 97.1 0.0025 5.4E-08 61.2 8.8 127 74-216 87-229 (364)
44 TIGR01369 CPSaseII_lrg carbamo 96.9 0.011 2.4E-07 63.9 13.2 142 48-203 31-211 (1050)
45 PRK13789 phosphoribosylamine-- 96.9 0.0097 2.1E-07 58.2 11.6 138 44-215 55-206 (426)
46 PRK06524 biotin carboxylase-li 96.9 0.0045 9.7E-08 62.1 8.9 114 91-215 118-239 (493)
47 PRK06111 acetyl-CoA carboxylas 96.8 0.0043 9.4E-08 59.9 8.3 102 100-214 99-215 (450)
48 PLN02735 carbamoyl-phosphate s 96.8 0.0082 1.8E-07 65.4 11.2 153 48-215 48-240 (1102)
49 PLN02257 phosphoribosylamine-- 96.8 0.011 2.3E-07 58.2 10.6 125 47-203 52-190 (434)
50 PRK08591 acetyl-CoA carboxylas 96.8 0.0052 1.1E-07 59.6 8.1 102 100-215 99-216 (451)
51 TIGR00514 accC acetyl-CoA carb 96.7 0.0055 1.2E-07 59.7 7.8 102 100-215 99-216 (449)
52 TIGR01235 pyruv_carbox pyruvat 96.7 0.02 4.3E-07 62.7 12.7 104 100-216 99-217 (1143)
53 PRK12833 acetyl-CoA carboxylas 96.7 0.0042 9.1E-08 61.2 6.8 100 103-216 106-220 (467)
54 TIGR01435 glu_cys_lig_rel glut 96.6 0.0095 2.1E-07 62.4 9.2 88 134-229 487-585 (737)
55 PRK12815 carB carbamoyl phosph 96.6 0.021 4.6E-07 61.9 12.1 153 48-215 32-223 (1068)
56 PRK08654 pyruvate carboxylase 96.6 0.0074 1.6E-07 60.3 7.8 103 100-216 99-217 (499)
57 PRK06395 phosphoribosylamine-- 96.5 0.034 7.4E-07 54.6 12.0 143 45-219 53-208 (435)
58 PRK14573 bifunctional D-alanyl 96.3 0.045 9.8E-07 57.5 11.9 151 51-216 477-669 (809)
59 PRK08463 acetyl-CoA carboxylas 96.1 0.027 5.9E-07 55.7 9.1 103 100-215 98-216 (478)
60 TIGR02712 urea_carbox urea car 95.9 0.048 1E-06 60.1 10.5 139 45-215 61-214 (1201)
61 KOG1057 Arp2/3 complex-interac 95.9 0.077 1.7E-06 55.9 11.2 185 29-225 40-262 (1018)
62 PRK07178 pyruvate carboxylase 95.8 0.035 7.6E-07 54.8 7.9 101 100-214 98-214 (472)
63 PRK12999 pyruvate carboxylase; 95.8 0.014 3.1E-07 63.8 5.6 102 100-215 103-220 (1146)
64 PF15632 ATPgrasp_Ter: ATP-gra 95.2 0.11 2.4E-06 49.7 8.9 126 49-204 58-209 (329)
65 PRK05784 phosphoribosylamine-- 94.9 0.48 1E-05 47.5 12.8 135 46-215 58-217 (486)
66 COG0026 PurK Phosphoribosylami 94.0 0.59 1.3E-05 45.7 10.8 140 52-206 19-184 (375)
67 COG0458 CarB Carbamoylphosphat 92.0 0.72 1.6E-05 45.4 8.2 117 102-233 103-229 (400)
68 PF02655 ATP-grasp_3: ATP-gras 91.9 0.22 4.7E-06 42.1 4.1 90 114-225 2-96 (161)
69 PRK13278 purP 5-formaminoimida 91.8 0.5 1.1E-05 45.7 6.8 134 48-204 31-202 (358)
70 COG2232 Predicted ATP-dependen 90.6 2.1 4.5E-05 41.7 9.6 153 28-215 13-196 (389)
71 PRK13277 5-formaminoimidazole- 89.4 0.79 1.7E-05 44.7 5.9 65 134-213 138-218 (366)
72 COG0439 AccC Biotin carboxylas 89.1 0.89 1.9E-05 45.4 6.1 124 89-226 89-232 (449)
73 TIGR02291 rimK_rel_E_lig alpha 88.6 5.5 0.00012 38.1 10.9 104 111-225 33-177 (317)
74 COG3919 Predicted ATP-grasp en 85.6 0.94 2E-05 43.6 3.9 88 107-206 106-204 (415)
75 PF02222 ATP-grasp: ATP-grasp 85.0 0.46 1E-05 41.3 1.4 68 134-206 5-77 (172)
76 PF02955 GSH-S_ATP: Prokaryoti 84.8 0.8 1.7E-05 40.0 2.8 79 137-222 12-101 (173)
77 PF02786 CPSase_L_D2: Carbamoy 81.0 3.2 6.9E-05 37.1 5.2 88 115-215 1-102 (211)
78 COG0027 PurT Formate-dependent 79.7 12 0.00026 36.5 8.8 141 49-204 27-201 (394)
79 COG1821 Predicted ATP-utilizin 76.7 8.5 0.00018 36.4 6.7 45 163-219 141-187 (307)
80 TIGR01016 sucCoAbeta succinyl- 75.8 2.1 4.5E-05 41.2 2.6 78 134-215 16-115 (386)
81 COG1181 DdlA D-alanine-D-alani 74.0 75 0.0016 30.3 12.5 157 49-217 26-201 (317)
82 PRK00696 sucC succinyl-CoA syn 68.4 6.1 0.00013 38.0 3.9 69 134-205 16-106 (388)
83 PF14397 ATPgrasp_ST: Sugar-tr 53.3 53 0.0012 30.5 7.2 99 105-206 16-130 (285)
84 KOG2356 Transcriptional activa 47.4 69 0.0015 31.1 6.9 96 7-109 92-195 (366)
85 PF03133 TTL: Tubulin-tyrosine 46.2 5.7 0.00012 36.3 -0.5 74 136-213 42-125 (292)
86 PF02065 Melibiase: Melibiase; 43.3 37 0.0008 33.4 4.6 63 37-103 163-230 (394)
87 cd05565 PTS_IIB_lactose PTS_II 39.0 1.2E+02 0.0026 24.1 6.2 79 43-121 14-95 (99)
88 cd01125 repA Hexameric Replica 37.0 68 0.0015 28.4 5.0 80 28-110 40-123 (239)
89 PF13481 AAA_25: AAA domain; P 36.1 36 0.00078 28.5 2.9 28 86-113 127-156 (193)
90 PF13407 Peripla_BP_4: Peripla 35.7 91 0.002 26.8 5.5 63 32-109 1-66 (257)
91 PF14972 Mito_morph_reg: Mitoc 34.4 58 0.0013 28.6 3.9 32 77-108 5-41 (165)
92 PF13380 CoA_binding_2: CoA bi 32.0 1.5E+02 0.0033 23.6 5.9 74 30-107 4-88 (116)
93 cd06353 PBP1_BmpA_Med_like Per 31.4 1.6E+02 0.0035 26.5 6.5 69 32-102 2-83 (258)
94 PRK06067 flagellar accessory p 29.5 1.2E+02 0.0025 26.6 5.2 39 86-124 107-146 (234)
95 PF14305 ATPgrasp_TupA: TupA-l 29.2 4.3E+02 0.0094 23.9 10.1 99 112-224 17-145 (239)
96 KOG0555 Asparaginyl-tRNA synth 28.8 42 0.00092 33.8 2.4 38 183-220 257-294 (545)
97 PF12122 DUF3582: Protein of u 27.7 1.4E+02 0.003 23.9 4.8 44 48-96 15-59 (101)
98 PF06228 ChuX_HutX: Haem utili 26.7 57 0.0012 27.7 2.6 18 197-214 105-123 (141)
99 cd01122 GP4d_helicase GP4d_hel 26.2 1.1E+02 0.0024 27.2 4.5 28 86-113 127-155 (271)
100 KOG2158 Tubulin-tyrosine ligas 25.8 28 0.00061 35.5 0.6 73 135-213 203-282 (565)
101 PRK11303 DNA-binding transcrip 24.4 2.9E+02 0.0062 24.8 6.9 90 16-106 44-149 (328)
102 TIGR02237 recomb_radB DNA repa 24.3 1.3E+02 0.0028 25.6 4.5 36 77-112 71-111 (209)
103 PRK13942 protein-L-isoaspartat 23.8 1E+02 0.0022 27.0 3.8 23 57-79 128-150 (212)
104 PRK10014 DNA-binding transcrip 23.8 3.2E+02 0.0069 24.6 7.2 89 17-105 48-151 (342)
105 cd02065 B12-binding_like B12 b 23.6 2.4E+02 0.0052 21.6 5.5 21 48-68 18-38 (125)
106 PF01135 PCMT: Protein-L-isoas 23.4 65 0.0014 28.7 2.4 26 57-82 124-149 (209)
107 PF12058 DUF3539: Protein of u 22.3 87 0.0019 24.9 2.6 19 199-217 4-24 (88)
108 PRK04266 fibrillarin; Provisio 22.2 3.4E+02 0.0074 24.3 6.9 71 28-103 96-174 (226)
109 KOG3350 Uncharacterized conser 22.2 1.6E+02 0.0035 26.7 4.6 68 27-114 72-151 (217)
110 TIGR00328 flhB flagellar biosy 21.1 2E+02 0.0042 27.9 5.3 62 1-62 213-307 (347)
111 PRK14103 trans-aconitate 2-met 20.7 1E+02 0.0022 27.4 3.2 44 29-82 54-97 (255)
112 cd00984 DnaB_C DnaB helicase C 20.3 1.5E+02 0.0033 25.7 4.2 28 86-113 110-138 (242)
113 KOG0370 Multifunctional pyrimi 20.1 47 0.001 36.9 1.0 84 106-203 1024-1117(1435)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=1.3e-84 Score=605.26 Aligned_cols=233 Identities=53% Similarity=0.887 Sum_probs=197.5
Q ss_pred CCCcEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEeC
Q 024689 26 QSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VID 105 (264)
..++++|||||++||+++|+|++|+.+|+++||+||+||+++||++||||||||||+||..|+++||+|.++||+++|||
T Consensus 4 ~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viD 83 (307)
T PF05770_consen 4 QRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVID 83 (307)
T ss_dssp GGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET
T ss_pred cccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEecc
Q 024689 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (264)
Q Consensus 106 P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~ 185 (264)
|+++|++|+||.+|++.|++++.....+.+++|+|++|+++.+++.+.++++||+||+||||++||||++||+|+|||++
T Consensus 84 p~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~ 163 (307)
T PF05770_consen 84 PPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNE 163 (307)
T ss_dssp -HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SG
T ss_pred CHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECH
Confidence 99999999999999999999887777789999999999877788999999999999999999999999999999999999
Q ss_pred CccCCCCCceeEEEeeeccceEEEEEEECceEEEEEecCCCCCCccccccCCcceecCccccccccCCcCCCC
Q 024689 186 YSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 258 (264)
Q Consensus 186 ~gL~~L~~P~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~~~~~~~~~~g~~~f~~vs~~~~~~~~~~~~ 258 (264)
+||++|++|||+||||||||+|||||||||+++|++||||||++.++..+..+.|+|+++||++++++.+++|
T Consensus 164 ~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d 236 (307)
T PF05770_consen 164 EGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLD 236 (307)
T ss_dssp GGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBS
T ss_pred HHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcc
Confidence 9999999999999999999999999999999999999999999999887888999999999999998876665
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=3.2e-66 Score=485.98 Aligned_cols=232 Identities=74% Similarity=1.122 Sum_probs=219.8
Q ss_pred cCCCcEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe
Q 024689 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (264)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI 104 (264)
...++++|||||++||+++|+|++|+.+|+++||+|++||+++||++|||||+||||+++..|++.+++|..+||+++||
T Consensus 17 ~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vi 96 (328)
T PLN02941 17 SQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVL 96 (328)
T ss_pred ccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEE
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 024689 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (264)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~ 184 (264)
||+++|+.++||.+|++.|+++..+++...|++|+++++.+...++...+..++++||+||||++||||+.+|.|++|++
T Consensus 97 dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~ 176 (328)
T PLN02941 97 DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYD 176 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecC
Confidence 99999999999999999999988777777899999999975444455557789999999999999999999999999999
Q ss_pred cCccCCCCCceeEEEeeeccceEEEEEEECceEEEEEecCCCCCCccccccCCcceecCccccccccCCcCC
Q 024689 185 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD 256 (264)
Q Consensus 185 ~~gL~~L~~P~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~~~~~~~~~~g~~~f~~vs~~~~~~~~~~ 256 (264)
++||..|++||++||||||+|++||||||||++.++.|+|+||+..++.....|.++|++|||+++.+++++
T Consensus 177 ~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~ 248 (328)
T PLN02941 177 QEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDAD 248 (328)
T ss_pred HHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999887777889999999999999988776
No 3
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.18 E-value=6.4e-10 Score=98.96 Aligned_cols=165 Identities=18% Similarity=0.269 Sum_probs=116.8
Q ss_pred chhhHHhHHHhcCcEEEEecCCCC---CCC----CCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHH
Q 024689 45 LQPKLEGLARNKGILFVAIDQNRP---LSD----QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (264)
Q Consensus 45 ~~~~l~~~~~~~gi~fv~ID~~~p---l~~----QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~ 117 (264)
..+.+.+.++++|+.+..+|++.. +.. ...+|+|+=...+......+.+..+.. .+.++.++++++...|+.
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESL-GVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHC-CCeeeCCHHHHHHHhhHH
Confidence 334688889999999988887542 222 336899987773322223444445544 577889999999999999
Q ss_pred HHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------
Q 024689 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------- 190 (264)
Q Consensus 118 ~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~------- 190 (264)
.+++.+++. .+.+|+++.+. +.+++.+.+. .+.||+|+||..++|+ ..+.++.+.+.+..
T Consensus 91 ~~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~~--~~~~p~vvKP~~g~~g---~gv~~i~~~~~l~~~~~~~~~ 157 (277)
T TIGR00768 91 LTSQLLAKA-------GLPQPRTGLAG-SPEEALKLIE--EIGFPVVLKPVFGSWG---RLVSLARDKQAAETLLEHFEQ 157 (277)
T ss_pred HHHHHHHHC-------CCCCCCEEEeC-CHHHHHHHHH--hcCCCEEEEECcCCCC---CceEEEcCHHHHHHHHHHHHH
Confidence 999998864 36689998875 2222222232 4679999999997764 55667888776632
Q ss_pred CC---CceeEEEeeeccc-eEEEEEEECceEEEEEec
Q 024689 191 LE---PPLVLQEFVNHGG-VLFKVYIVGEAIKVVRRF 223 (264)
Q Consensus 191 L~---~P~VlQEFINHgg-vLfKVYVIGd~v~vv~R~ 223 (264)
.. .++++||||++.+ .-+.|+|+|+++..+.++
T Consensus 158 ~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r 194 (277)
T TIGR00768 158 LNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYR 194 (277)
T ss_pred hcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEE
Confidence 22 3899999999874 889999999998764433
No 4
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.16 E-value=9.7e-10 Score=98.84 Aligned_cols=164 Identities=17% Similarity=0.261 Sum_probs=112.8
Q ss_pred hhHHhHHHhcCcEEEEecCCCC---CC---CC-CCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHH
Q 024689 47 PKLEGLARNKGILFVAIDQNRP---LS---DQ-GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~p---l~---~Q-gpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~m 119 (264)
+.+...++++|++...+|.+.. +. .+ .++|+++=.-....-...+....+.+ ++.++.|+++++...|+..+
T Consensus 13 ~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~-g~~~~n~~~~~~~~~dK~~~ 91 (280)
T TIGR02144 13 KMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEAL-GVPVINSSHVIEACGDKIFT 91 (280)
T ss_pred HHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHC-CCcEECcHHHHHHHhhHHHH
Confidence 3567788999999998876642 11 12 36898775522211111222333333 57789999999999999999
Q ss_pred HHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC---------
Q 024689 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK--------- 190 (264)
Q Consensus 120 l~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~--------- 190 (264)
++.+++. .|.+|+.+.+. +..+..+.. ..+.||+|+||...+| +..+.++.+.+.+..
T Consensus 92 ~~~l~~~-------gip~P~t~~~~-~~~~~~~~~--~~~~~P~vvKP~~g~~---g~gv~~v~~~~~l~~~~~~~~~~~ 158 (280)
T TIGR02144 92 YLKLAKA-------GVPTPRTYLAF-DREAALKLA--EALGYPVVLKPVIGSW---GRLVALIRDKDELESLLEHKEVLG 158 (280)
T ss_pred HHHHHHC-------CcCCCCeEeeC-CHHHHHHHH--HHcCCCEEEEECcCCC---cCCEEEECCHHHHHHHHHHHHhhc
Confidence 9988764 46789988774 222222222 3467999999998655 566888888776532
Q ss_pred --CCCceeEEEeeeccceEEEEEEECceEE-EEEecC
Q 024689 191 --LEPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFS 224 (264)
Q Consensus 191 --L~~P~VlQEFINHggvLfKVYVIGd~v~-vv~R~S 224 (264)
...|+++||||.+.|.-+.+||+|+++. .+.|.+
T Consensus 159 ~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~ 195 (280)
T TIGR02144 159 GSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS 195 (280)
T ss_pred CCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC
Confidence 2358999999998788899999999865 455665
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.74 E-value=4e-07 Score=83.85 Aligned_cols=162 Identities=18% Similarity=0.253 Sum_probs=110.2
Q ss_pred hHHhHHHhcCcEEEEecCCCC---CC-----------CCCCceEEEeccCch--HHHHHHHHHHHhCCCeEEeCchhHHh
Q 024689 48 KLEGLARNKGILFVAIDQNRP---LS-----------DQGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVLDPPYAIQ 111 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~p---l~-----------~QgpfDvILHKltd~--~~~~~l~~y~~~hP~v~VIDP~~ai~ 111 (264)
.+...++++|++.+.+|.+.. +. ...++|+++=.+... .......+..+.. ++.++.++.+++
T Consensus 17 ~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~-g~~v~n~~~a~~ 95 (300)
T PRK10446 17 RLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEML-GSYPLNESVAIA 95 (300)
T ss_pred HHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHHC-CCceecCHHHHH
Confidence 466778899999999997752 21 123789888655432 2222223333333 367788888999
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC--
Q 024689 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-- 189 (264)
Q Consensus 112 ~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~-- 189 (264)
...|+..+.+.+.+. .+.+|+...+. +..++.+.+. .-..||+|+||....| |..+.++.+++.+.
T Consensus 96 ~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~~-~~~~~P~VvKP~~g~~---g~GV~~v~~~~~~~~~ 163 (300)
T PRK10446 96 RARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLID-MVGGAPLVVKLVEGTQ---GIGVVLAETRQAAESV 163 (300)
T ss_pred hhhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHHH-HhCCCCEEEEECCCCC---cccEEEEcCHHHHHHH
Confidence 999999999998864 46789887764 2222222222 2236999999998754 55566776655443
Q ss_pred -----CCCCceeEEEeeecc-ceEEEEEEECceEE-EEEe
Q 024689 190 -----KLEPPLVLQEFVNHG-GVLFKVYIVGEAIK-VVRR 222 (264)
Q Consensus 190 -----~L~~P~VlQEFINHg-gvLfKVYVIGd~v~-vv~R 222 (264)
....++++||||++. |.=+-|+|+|+++. ++.|
T Consensus 164 ~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r 203 (300)
T PRK10446 164 IDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIER 203 (300)
T ss_pred HHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEE
Confidence 345689999999874 88999999998754 4555
No 6
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.62 E-value=6.8e-07 Score=81.63 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=112.6
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCC---CCCceEEEeccCch-HHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHH
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGK-EWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQ 121 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~---QgpfDvILHKltd~-~~~~~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~ 121 (264)
..+....++.|++.+.||.+..+.+ ...+|+|+--+.+. .-...++.+.+.+ ++.++-+ +.++....|+..+.+
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~k~ 104 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGVLASALAMDKLRTKL 104 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHH
Confidence 3466777899999999988876654 34689888654221 0012345556655 7888766 789999999999988
Q ss_pred HHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCc
Q 024689 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPP 194 (264)
Q Consensus 122 ~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P 194 (264)
.+.+. .|.+|+++.+... ++..+.+ ..+.||+|+||....|+ ..+.++.+.+.+.. ...+
T Consensus 105 ~l~~~-------gIp~p~~~~~~~~-~~~~~~~--~~~~~P~ivKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~ 171 (304)
T PRK01372 105 VWQAA-------GLPTPPWIVLTRE-EDLLAAI--DKLGLPLVVKPAREGSS---VGVSKVKEEDELQAALELAFKYDDE 171 (304)
T ss_pred HHHHC-------CCCCCCEEEEeCc-chHHHHH--hhcCCCEEEeeCCCCCC---CCEEEeCCHHHHHHHHHHHHhcCCc
Confidence 88764 4778999988632 2222222 45789999999997765 45778888777642 2568
Q ss_pred eeEEEeeeccceEEEEEEECceEE
Q 024689 195 LVLQEFVNHGGVLFKVYIVGEAIK 218 (264)
Q Consensus 195 ~VlQEFINHggvLfKVYVIGd~v~ 218 (264)
+++||||+ |.=|-|.|+||.+.
T Consensus 172 ~lvEe~i~--G~E~~v~vi~~~~~ 193 (304)
T PRK01372 172 VLVEKYIK--GRELTVAVLGGKAL 193 (304)
T ss_pred EEEEcccC--CEEEEEEEECCCcc
Confidence 99999998 77888999998754
No 7
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.59 E-value=4.8e-07 Score=82.87 Aligned_cols=154 Identities=16% Similarity=0.235 Sum_probs=107.5
Q ss_pred HHhHHHhcCcEEEEecCCCC-------CC-------CC-CCceEEEeccCchH-HHHHHHHHHHhCCCeEEeCc-hhHHh
Q 024689 49 LEGLARNKGILFVAIDQNRP-------LS-------DQ-GPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDP-PYAIQ 111 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~p-------l~-------~Q-gpfDvILHKltd~~-~~~~l~~y~~~hP~v~VIDP-~~ai~ 111 (264)
+....+++|++++.+|.+.. +. .+ ..+|+|+-=+.+.. -...++...+.+ ++.++-+ +.++.
T Consensus 23 i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gip~~g~~~~~~~ 101 (315)
T TIGR01205 23 VLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLELM-GIPYTGSGVLASA 101 (315)
T ss_pred HHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHHc-CCCccCCCHHHHH
Confidence 55667889999999998761 11 11 47899997443220 012344455544 6777765 78999
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHH---HHhcCCccceEeeeccccCCCCceeEEEEeccCcc
Q 024689 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (264)
Q Consensus 112 ~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~---l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL 188 (264)
...|+..+.+.+++. .|.+|+++.+..+..+..+. .....+.||+|+||....| |..+.++.+.+.|
T Consensus 102 ~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el 171 (315)
T TIGR01205 102 LSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGS---SVGVSKVKSEEEL 171 (315)
T ss_pred HHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCC---ccCEEEECCHHHH
Confidence 999999999998864 47789999886222211111 1124689999999988765 4567899998777
Q ss_pred CC-------CCCceeEEEeeeccceEEEEEEECc
Q 024689 189 KK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 189 ~~-------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.. ...++++||||+ |.=|-|.|+|+
T Consensus 172 ~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~ 203 (315)
T TIGR01205 172 QAALDEAFEYDEEVLVEQFIK--GRELEVSILGN 203 (315)
T ss_pred HHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECC
Confidence 52 356899999995 88999999994
No 8
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.45 E-value=3.6e-07 Score=79.09 Aligned_cols=101 Identities=27% Similarity=0.454 Sum_probs=53.5
Q ss_pred CHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----
Q 024689 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---- 190 (264)
Q Consensus 115 nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~---- 190 (264)
|+..+++.|.+. .+.+|+..++.+ ..+..+.+.+.+ .+|+|.||+..++ ...+.++-+.+.+..
T Consensus 3 dK~~~~~~l~~~-------gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~g~~---G~gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 3 DKLLTLQLLAKA-------GIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLRGSS---GRGVFLINSPDELESLLDA 70 (190)
T ss_dssp BHHHHHHHHHHT-------T-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH-
T ss_pred CHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCCCCC---CCEEEEecCHHHHHHHHHH
Confidence 566667777653 477899988853 333344455555 9999999987543 567788888776643
Q ss_pred ---CCCceeEEEeeeccc-eEEEEEEECceEEEEEecCCCC
Q 024689 191 ---LEPPLVLQEFVNHGG-VLFKVYIVGEAIKVVRRFSLPD 227 (264)
Q Consensus 191 ---L~~P~VlQEFINHgg-vLfKVYVIGd~v~vv~R~SLpN 227 (264)
...|+++|+||.+.+ .-+.|||||+++....+.+-++
T Consensus 71 ~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~ 111 (190)
T PF08443_consen 71 FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE 111 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEETTEEEEEEE-----
T ss_pred HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc
Confidence 467999999999985 9999999999998755555443
No 9
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.13 E-value=3.2e-05 Score=80.73 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=103.3
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCC---CCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~---QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (264)
.++..|.++|+.+..+|.+..+-. .+..+.+..- ...-.|+..++....|+..+.+.|.
T Consensus 436 ~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~------------------~~t~~~s~~s~~~~~DK~~tk~lL~ 497 (752)
T PRK02471 436 ILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNG------------------NMTSKDNYISPLIMENKVVTKKILA 497 (752)
T ss_pred HHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEec------------------cccCCCHHHHHHHhhCHHHHHHHHH
Confidence 466788999999999998655322 2234443321 2345677777877789998888887
Q ss_pred hccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE---eccCccC-------CCCCc
Q 024689 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA---YDQYSLK-------KLEPP 194 (264)
Q Consensus 125 ~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv---f~~~gL~-------~L~~P 194 (264)
+. .|.+|++.++.. .++....+. .-+.||+|+||....++. ...++ .+.+.+. .....
T Consensus 498 ~~-------GIpvP~~~~~~~-~e~a~~~~~-~~~g~PvVVKP~~g~~G~---GV~~~~~~~~~eel~~A~~~a~~~~~~ 565 (752)
T PRK02471 498 EA-------GFPVPAGDEFTS-LEEALADYS-LFADKAIVVKPKSTNFGL---GISIFKEPASLEDYEKALEIAFREDSS 565 (752)
T ss_pred HC-------CcCCCCEEEEcC-HHHHHHHHH-HhcCCCEEEEECCCCCcC---CeEEecCcCCHHHHHHHHHHHHhcCCc
Confidence 63 477899988852 222222222 113799999999876653 44443 3334332 22468
Q ss_pred eeEEEeeeccceEEEEEEECceEEEEEecCCCCCCcc
Q 024689 195 LVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQ 231 (264)
Q Consensus 195 ~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~~~~ 231 (264)
+++||||. |.=|-|+|||+++..+.+.--+++.-+
T Consensus 566 vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GD 600 (752)
T PRK02471 566 VLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGD 600 (752)
T ss_pred EEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccC
Confidence 99999995 899999999999988877777777644
No 10
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2.6e-05 Score=73.68 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=98.7
Q ss_pred CCceEEEeccCchHHH-HHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChh
Q 024689 73 GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (264)
Q Consensus 73 gpfDvILHKltd~~~~-~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~ 151 (264)
..+|+++=.-+...-. -.+-+..+ .=.+.||+|+++++...|..-.++.+... .+.+|+-+++.. ..+..
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~E-~~G~~viN~p~~i~~~~nK~~~~~~l~~~-------~ipvP~T~i~~~-~~~~~ 147 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLAE-RKGVPVINDPQSIRRCRNKLYTTQLLAKA-------GIPVPPTLITRD-PDEAA 147 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHHH-HcCCeEECCHHHHHhhhhHHHHHHHHHhc-------CCCCCCEEEEcC-HHHHH
Confidence 3788887766643222 11112222 23799999999999999999888887753 467899998853 23333
Q ss_pred HHHHhcCCccceEeeeccccCCCCceeEEEEeccC-ccCCC--------CCceeEEEeeeccceEEEEEEECceEEEEEe
Q 024689 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-SLKKL--------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRR 222 (264)
Q Consensus 152 ~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~-gL~~L--------~~P~VlQEFINHggvLfKVYVIGd~v~vv~R 222 (264)
...+..+.||+|.||+-++|. .....+-+.+ .|.++ .-++++||||+=...=.|.|++||...+..+
T Consensus 148 -~~~~~~~g~pvVlKp~~Gs~G---~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y 223 (318)
T COG0189 148 -EFVAEHLGFPVVLKPLDGSGG---RGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIY 223 (318)
T ss_pred -HHHHHhcCCCEEEeeCCCCCc---cceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEe
Confidence 334456889999999998876 4556677766 54332 1379999999999999999999999988876
No 11
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.12 E-value=4.7e-05 Score=71.18 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=99.0
Q ss_pred hHHhHHHhcCcEEEEecCCCC---------------C----------CCC-----CCceEEEeccCc---hHH--HHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRP---------------L----------SDQ-----GPFDIVLHKLTG---KEW--RQILE 92 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~p---------------l----------~~Q-----gpfDvILHKltd---~~~--~~~l~ 92 (264)
.|...|+++|.+..-++++.- + .+. ..||+||-+-.. ..+ ...+-
T Consensus 22 ~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l 101 (312)
T TIGR01380 22 ALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLL 101 (312)
T ss_pred HHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHHHHHH
Confidence 366778889988876665531 0 100 267877766421 122 22344
Q ss_pred HHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccC
Q 024689 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (264)
Q Consensus 93 ~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~G 172 (264)
++.+.. ++.|+.|+++++.-.|+..+++.+. .+|+.++.+ +..++.+-+.+.| |+|+||+.+.|
T Consensus 102 ~~le~~-g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~~~~~~~g---~vVvKPl~G~~ 165 (312)
T TIGR01380 102 ELADPT-GTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIRAFLAEHG---DIVLKPLDGMG 165 (312)
T ss_pred HHHHhC-CCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHHHHHHHcC---CEEEEECCCCC
Confidence 444444 6889999999998888776555321 378876543 4334444444455 89999999877
Q ss_pred CCCceeEEEEec-cCcc-------CCC-CCceeEEEeeec-cceEEEEEEECceEE--EEEecCCC
Q 024689 173 SAKSHELSLAYD-QYSL-------KKL-EPPLVLQEFVNH-GGVLFKVYIVGEAIK--VVRRFSLP 226 (264)
Q Consensus 173 s~~SH~Malvf~-~~gL-------~~L-~~P~VlQEFINH-ggvLfKVYVIGd~v~--vv~R~SLp 226 (264)
.. .+..+-. ...+ ..+ ..|+++|+||+. .+-=+-|+|||+++. ...|.+-+
T Consensus 166 G~---gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~ 228 (312)
T TIGR01380 166 GE---GIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAG 228 (312)
T ss_pred Cc---eEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCC
Confidence 54 3333433 2222 122 359999999984 235689999999963 56675544
No 12
>PRK05246 glutathione synthetase; Provisional
Probab=98.11 E-value=7.7e-05 Score=69.59 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=99.2
Q ss_pred hHHhHHHhcCcEEEEecCCCCC---------------C--CC-------------CCceEEEeccCc---h--HHHHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRPL---------------S--DQ-------------GPFDIVLHKLTG---K--EWRQILE 92 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl---------------~--~Q-------------gpfDvILHKltd---~--~~~~~l~ 92 (264)
.|...|+++|++...+++..-. . .+ ..||+|+-+-.. . .+...+-
T Consensus 23 ~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l 102 (316)
T PRK05246 23 AMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIYATYLL 102 (316)
T ss_pred HHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHHHHHHHH
Confidence 4777888899888766554210 0 00 137988866322 1 1223334
Q ss_pred HHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccC
Q 024689 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (264)
Q Consensus 93 ~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~G 172 (264)
+..+.. .+.++.++++++...|...+++... .+|+..+.+ +...+.+.+.+.| |+|+||+..+|
T Consensus 103 ~~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~~~~~~~---~vVlKP~~G~~ 166 (316)
T PRK05246 103 ERAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRAFRAEHG---DIILKPLDGMG 166 (316)
T ss_pred HHHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHHHHHHCC---CEEEEECCCCC
Confidence 444444 8999999999999988877665321 368876553 3333444455454 99999999877
Q ss_pred CCCceeEEEEeccCccC-------CC-CCceeEEEeeecc-ceEEEEEEECceEEE--EEecCCC
Q 024689 173 SAKSHELSLAYDQYSLK-------KL-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV--VRRFSLP 226 (264)
Q Consensus 173 s~~SH~Malvf~~~gL~-------~L-~~P~VlQEFINHg-gvLfKVYVIGd~v~v--v~R~SLp 226 (264)
....+. +-.+...+. .+ ..|+++|+||.-. +-=..|+|+|+++.. +.|-+-+
T Consensus 167 G~gV~~--i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R~~~~ 229 (316)
T PRK05246 167 GAGIFR--VKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAG 229 (316)
T ss_pred ccceEE--EeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEecCCC
Confidence 644333 212233322 22 4699999999652 234689999998664 5665443
No 13
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.09 E-value=3.3e-05 Score=70.95 Aligned_cols=146 Identities=15% Similarity=0.203 Sum_probs=104.2
Q ss_pred HHhHHHhcCcEEEEecCCCCCC----CCCCceEEEeccCchH-HHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHH
Q 024689 49 LEGLARNKGILFVAIDQNRPLS----DQGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQC 122 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl~----~QgpfDvILHKltd~~-~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~ 122 (264)
+....++.|++.+.+|.+..+. +...+|+++--+.+.. -...++.+.+.+ +++++ .++.++...+|+..+.+.
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~-gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL-GIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHH
Confidence 4455677899999998766432 2357899988775431 013456666666 67777 448899999999988777
Q ss_pred HHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCce
Q 024689 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPL 195 (264)
Q Consensus 123 l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~ 195 (264)
++. .+.+|+++.+... .....+.||+|+||....|+ -.+.++.+.+.|.. -..++
T Consensus 103 l~~--------~ip~p~~~~~~~~-------~~~~~l~~P~vvKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~v 164 (299)
T PRK14571 103 LKG--------TVEIPDFVEIKEF-------MKTSPLGYPCVVKPRREGSS---IGVFICESDEEFQHALKEDLPRYGSV 164 (299)
T ss_pred Hhc--------CCCCCCEEEEech-------hhhhhcCCCEEEecCCCCCc---CCEEEECCHHHHHHHHHHHHhhCCcE
Confidence 652 2678999888421 11245899999999877664 55668999887742 13479
Q ss_pred eEEEeeeccceEEEEEEECc
Q 024689 196 VLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 196 VlQEFINHggvLfKVYVIGd 215 (264)
++||||. |.=|=|-|+|+
T Consensus 165 lVEeyI~--G~E~sv~vl~~ 182 (299)
T PRK14571 165 IVQEYIP--GREMTVSILET 182 (299)
T ss_pred EEEcccc--ceEEEEEEEcC
Confidence 9999996 78999999986
No 14
>PRK12458 glutathione synthetase; Provisional
Probab=98.09 E-value=5.1e-05 Score=71.95 Aligned_cols=130 Identities=13% Similarity=0.184 Sum_probs=82.8
Q ss_pred CceEEEeccCc---hHHHHHHHHH------HHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEc
Q 024689 74 PFDIVLHKLTG---KEWRQILEEY------RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE 144 (264)
Q Consensus 74 pfDvILHKltd---~~~~~~l~~y------~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~ 144 (264)
.||+|+++-.. .....++..+ ..+...+.++.++++++...|...+++..+ +.+|+.++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~----------~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE----------EVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc----------CCCCCEEEeC
Confidence 48999998643 2233344321 223347899999999999999887644311 3578887653
Q ss_pred cCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCc--cCCC------CCceeEEEeeecc-ceEEEEEEECc
Q 024689 145 RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS--LKKL------EPPLVLQEFVNHG-GVLFKVYIVGE 215 (264)
Q Consensus 145 ~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~g--L~~L------~~P~VlQEFINHg-gvLfKVYVIGd 215 (264)
+.+.+.+.+.+.| ..|+|+||+...|+. ...++.+.+. +..+ ..|+++|+||... +-=.-|+|+|+
T Consensus 149 -~~~~~~~~~~~~~-~~pvVvKPl~G~gG~---gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g 223 (338)
T PRK12458 149 -NKEYIREFLEESP-GDKMILKPLQGSGGQ---GVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNG 223 (338)
T ss_pred -CHHHHHHHHHHcC-CCeEEEEECCCCCcc---CeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECC
Confidence 3333333333332 236999999987754 4445554442 3211 4599999999852 45688899999
Q ss_pred eEE
Q 024689 216 AIK 218 (264)
Q Consensus 216 ~v~ 218 (264)
++.
T Consensus 224 ~~v 226 (338)
T PRK12458 224 EPL 226 (338)
T ss_pred EEE
Confidence 888
No 15
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.07 E-value=5.5e-05 Score=69.51 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=75.3
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE
Q 024689 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (264)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal 181 (264)
++..++++++...|+..|.+.+.+.. +.+|+++.+++ .+++.+.+....+.||+|+||....| |..+.+
T Consensus 98 ~~~~~~~~~~~~~dK~~~~~~l~~~g-------ip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~---s~gv~~ 166 (326)
T PRK12767 98 VLVSSKEVIEICNDKWLTYEFLKENG-------IPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSA---SIGVFK 166 (326)
T ss_pred EEeCCHHHHHHHhcHHHHHHHHHHcC-------CCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCC---ccCeEE
Confidence 45678899999999999999988753 66899887742 22222222235789999999966554 567888
Q ss_pred EeccCccCCC---CCceeEEEeeeccceEEEEEEE----CceEEEEEecC
Q 024689 182 AYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIV----GEAIKVVRRFS 224 (264)
Q Consensus 182 vf~~~gL~~L---~~P~VlQEFINHggvLfKVYVI----Gd~v~vv~R~S 224 (264)
+.+.+.|... ..++++|||| .|.-|-+-++ |..+.+..+..
T Consensus 167 v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~ 214 (326)
T PRK12767 167 VNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKR 214 (326)
T ss_pred eCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeee
Confidence 8887776421 2499999999 4555555444 44445554443
No 16
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.98 E-value=6.9e-05 Score=71.35 Aligned_cols=152 Identities=19% Similarity=0.173 Sum_probs=95.7
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCCCCCceEEE-eccCchH------------------HHHHHHHHHHhCCCeEEeCchh
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVL-HKLTGKE------------------WRQILEEYRQTHPEVTVLDPPY 108 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvIL-HKltd~~------------------~~~~l~~y~~~hP~v~VIDP~~ 108 (264)
-+...|++.|+.++-+|.+..-.-..-.|-.+ --..|.+ +-...-++..++ ..+.-+++
T Consensus 16 ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~~~~l~~l~~~--~~~~p~~~ 93 (372)
T PRK06019 16 MLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENVPAEALDALAAR--VPVPPGPD 93 (372)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCCCHHHHHHHhcC--CeeCcCHH
Confidence 35556788899999999864322111122111 1222321 111222344455 45778999
Q ss_pred HHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCcc
Q 024689 109 AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL 188 (264)
Q Consensus 109 ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL 188 (264)
+++...||..|-+.++++ .|.+|++..+++ .+++.+.. ..+.||+|+||... ..+++...++.+++.|
T Consensus 94 ~~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~~--~~~g~P~vlKp~~~--g~~g~Gv~~v~~~~el 161 (372)
T PRK06019 94 ALAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAAL--ADLGLPAVLKTRRG--GYDGKGQWVIRSAEDL 161 (372)
T ss_pred HHHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCcEEEEeCCC--CcCCCCeEEECCHHHH
Confidence 999999999999998875 467899998853 22222222 35789999999752 2346778899998877
Q ss_pred CC----C-CCceeEEEeeeccceEEEEEEEC
Q 024689 189 KK----L-EPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 189 ~~----L-~~P~VlQEFINHggvLfKVYVIG 214 (264)
.. + ..++++||||+- +.-|=|-+++
T Consensus 162 ~~a~~~~~~~~~ivEe~I~~-~~E~sv~~~~ 191 (372)
T PRK06019 162 EAAWALLGSVPCILEEFVPF-EREVSVIVAR 191 (372)
T ss_pred HHHHHhcCCCCEEEEecCCC-CeEEEEEEEE
Confidence 53 2 358999999984 3334454444
No 17
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.98 E-value=0.00014 Score=68.48 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=68.6
Q ss_pred eEEeCchhHHhhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeE
Q 024689 101 VTVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (264)
Q Consensus 101 v~VIDP~~ai~~L~nR~~ml~~l-~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~M 179 (264)
+.+.-++++++...||..+.+.+ .+. .|.+|+++.+++ .+++.+.+ ..+.||+|+||....| |-.+
T Consensus 86 ~~~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~VvKP~~g~~---s~gv 152 (380)
T TIGR01142 86 YFVVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREAV--EKIGYPCVVKPVMSSS---GKGQ 152 (380)
T ss_pred CeeCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCCEEEEECCCcC---CCCe
Confidence 44566788888889998877764 443 477899998853 22222222 3678999999985544 5578
Q ss_pred EEEeccCccCC-----------CCCceeEEEeeeccceEEEEEEE
Q 024689 180 SLAYDQYSLKK-----------LEPPLVLQEFVNHGGVLFKVYIV 213 (264)
Q Consensus 180 alvf~~~gL~~-----------L~~P~VlQEFINHggvLfKVYVI 213 (264)
.++.+++.|.. ...++++||||.. +.=+-|.++
T Consensus 153 ~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~-~~E~sv~~~ 196 (380)
T TIGR01142 153 SVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF-DYEITLLTV 196 (380)
T ss_pred EEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC-CEEEEEEEE
Confidence 89999887742 1358999999984 455555555
No 18
>PRK07206 hypothetical protein; Provisional
Probab=97.97 E-value=9.4e-05 Score=70.56 Aligned_cols=101 Identities=22% Similarity=0.323 Sum_probs=68.8
Q ss_pred CeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCC-ccceEeeeccccCCCCcee
Q 024689 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL-~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+++-.+++.+....|+..|.+.+++. .+.+|+++.++ +.+++.+.+...|. .+|+|+||....|+ ..
T Consensus 93 ~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP~~g~gs---~g 161 (416)
T PRK07206 93 TPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWLRENGLIDRPVVIKPLESAGS---DG 161 (416)
T ss_pred CCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHHHhcCCCCCCEEEeCCCCCCC---CC
Confidence 333456678888889999999998875 46689998875 22333333433332 44999999887765 56
Q ss_pred EEEEeccCccCC--------------CCCceeEEEeeeccceEEEEEEE
Q 024689 179 LSLAYDQYSLKK--------------LEPPLVLQEFVNHGGVLFKVYIV 213 (264)
Q Consensus 179 Malvf~~~gL~~--------------L~~P~VlQEFINHggvLfKVYVI 213 (264)
+.++.+.+.|.. -..++++||||. |.-|=|-++
T Consensus 162 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~ 208 (416)
T PRK07206 162 VFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFV 208 (416)
T ss_pred EEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEE
Confidence 778888776632 135899999997 455555444
No 19
>PRK06849 hypothetical protein; Provisional
Probab=97.95 E-value=0.00018 Score=68.52 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=71.4
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 024689 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (264)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv 182 (264)
..-+++.++.++|+..+.+.++++ .+.+|+++.++. .+++ ..+......||+|+||...+|+. .+.++
T Consensus 104 ~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l-~~~~~~~~~~P~vlKP~~~~~~~---~v~~~ 171 (389)
T PRK06849 104 LHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAI-RNFMFKTPHTPYVLKPIYSRFVR---RVDLL 171 (389)
T ss_pred EcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHH-HHHhhcCCCCcEEEEeCcccCCC---eEEEe
Confidence 457889999999999999998876 467899999853 2222 23322334799999999887754 55567
Q ss_pred eccCccCCC----CCceeEEEeeeccceEEEEEEECceEE
Q 024689 183 YDQYSLKKL----EPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (264)
Q Consensus 183 f~~~gL~~L----~~P~VlQEFINHggvLfKVYVIGd~v~ 218 (264)
.+++.+..+ ..|+++||||.-...-.=.++.+.++.
T Consensus 172 ~~~~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~~G~v~ 211 (389)
T PRK06849 172 PKEAALKELPISKDNPWVMQEFIQGKEYCSYSIVRSGELR 211 (389)
T ss_pred cCHHHhcccccCCCCCeEEEEEecCCeEEEEEEEECCEEE
Confidence 777767655 248999999984432222334445543
No 20
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.95 E-value=0.00014 Score=68.28 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=94.0
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCchHH-------------------HHHHHHHHHhCCCeEEeCch
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEW-------------------RQILEEYRQTHPEVTVLDPP 107 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~QgpfD-vILHKltd~~~-------------------~~~l~~y~~~hP~v~VIDP~ 107 (264)
-|...|++.|+.++-+|.+..-....-.| .++...+|.+. ...+..+.+. .+.+.-++
T Consensus 13 ~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~--g~~~~p~~ 90 (352)
T TIGR01161 13 MLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEAR--GVKLFPSP 90 (352)
T ss_pred HHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhC--CCeECCCH
Confidence 45667788999999999864211111112 22333444321 1123333333 25566888
Q ss_pred hHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCc
Q 024689 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (264)
Q Consensus 108 ~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~g 187 (264)
++++...||..+-+.+++. .+.+|+++.+++ .+++.+.+ ..+.||+|+||.... ..+..+.++.+.+.
T Consensus 91 ~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~g--~~g~Gv~~v~~~~e 158 (352)
T TIGR01161 91 DALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAAL--QELGFPVVLKARTGG--YDGRGQYRIRNEAD 158 (352)
T ss_pred HHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHHH--HHcCCCEEEEeCCCC--CCCCCEEEECCHHH
Confidence 9999999999999988864 467899998863 22222222 357899999998642 23567778888777
Q ss_pred cCC----C-CCceeEEEeeeccceEEEEEEE
Q 024689 188 LKK----L-EPPLVLQEFVNHGGVLFKVYIV 213 (264)
Q Consensus 188 L~~----L-~~P~VlQEFINHggvLfKVYVI 213 (264)
|.. + ..++++||||..+ .=|=|.++
T Consensus 159 l~~a~~~~~~~~~lvEe~I~~~-~E~sv~~~ 188 (352)
T TIGR01161 159 LPQAAKELGDRECIVEEFVPFE-RELSVIVA 188 (352)
T ss_pred HHHHHHhcCCCcEEEEecCCCC-eEEEEEEE
Confidence 642 2 3489999999853 33334343
No 21
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.92 E-value=0.00015 Score=68.52 Aligned_cols=151 Identities=15% Similarity=0.235 Sum_probs=93.5
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCC-----------------------CCCceEEEeccCchHHHHHHHHHHHhCCCeEE
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~-----------------------QgpfDvILHKltd~~~~~~l~~y~~~hP~v~V 103 (264)
..+...+++.|+.++.+|.+..-.. ...+|+|+--..+.. ...+.+. .+. .+.+
T Consensus 25 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~~-~~~~~~l-~~~-g~~~ 101 (395)
T PRK09288 25 KEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAIA-TDALVEL-EKE-GFNV 101 (395)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcCC-HHHHHHH-Hhc-CCee
Confidence 3455567888999998887542110 013444443222211 1223333 333 5556
Q ss_pred eCchhHHhhhcCHHHHHHHHH-hccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 024689 104 LDPPYAIQHLHNRQSMLQCVA-DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (264)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l~-~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv 182 (264)
..++++++...||..+-+.+. ++ .+.+|++..+++ .+++.+.. ..+.||+|+||....| |..+.++
T Consensus 102 ~~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~~--~~~g~P~VvKP~~g~~---s~Gv~~v 168 (395)
T PRK09288 102 VPTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAAV--EEIGYPCVVKPVMSSS---GKGQSVV 168 (395)
T ss_pred CCCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHHH--HhcCCCEEEEeCCCcC---CCCeEEE
Confidence 677899999999998888763 43 467899998863 22222222 3588999999985444 5667899
Q ss_pred eccCccCCC-----------CCceeEEEeeeccceEEEEEEEC
Q 024689 183 YDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 183 f~~~gL~~L-----------~~P~VlQEFINHggvLfKVYVIG 214 (264)
.+++.|.+. ..++++||||.. +.=+-|.+++
T Consensus 169 ~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~-~~E~sv~~~~ 210 (395)
T PRK09288 169 RSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDF-DYEITLLTVR 210 (395)
T ss_pred CCHHHHHHHHHHHHhhccccCCCEEEEEecCC-CEEEEEEEEE
Confidence 998777421 268999999984 4445555543
No 22
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.91 E-value=8.2e-05 Score=77.26 Aligned_cols=149 Identities=16% Similarity=0.297 Sum_probs=102.0
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhcc
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN 127 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~ 127 (264)
.+++.|.++||.+..++-. .+ +|=-++.. .+.++..... -++..+++...|+..+.+.|++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~-~~---------v~lgyG~~-~~~i~~~~~~------~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDG-SL---------VQLGYGKY-QRRIQAAETD------QTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCC-Ce---------EecCCcHH-HHHHHHhcCC------CCcHHHHHHhCCHHHHHHHHHHC-
Confidence 5778899999999887632 21 22222221 1222222221 56778899999999999988864
Q ss_pred ccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE-EeccCccCC-------CCCceeEEE
Q 024689 128 LSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEPPLVLQE 199 (264)
Q Consensus 128 ~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal-vf~~~gL~~-------L~~P~VlQE 199 (264)
.|.+|+...+. +.++..+.. ..+.||+|+||.... .+..|.+ +.+++.|.. ...++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~a--~~iG~PvVVKP~~G~---~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEAA--EEIGYPVVVKPLDGN---HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 46789988774 222333333 357899999998643 3567777 777776642 246899999
Q ss_pred eeeccceEEEEEEECceEEEEEecCCCCC
Q 024689 200 FVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (264)
Q Consensus 200 FINHggvLfKVYVIGd~v~vv~R~SLpN~ 228 (264)
||. |.-|.|||+|+++..+.|.--+++
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v 320 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHV 320 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEE
Confidence 997 677999999999999888766654
No 23
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.89 E-value=2.9e-05 Score=64.57 Aligned_cols=93 Identities=16% Similarity=0.315 Sum_probs=55.4
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC
Q 024689 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191 (264)
Q Consensus 112 ~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L 191 (264)
++.|+..|.+.+.+. .+.+|+++.++. .+++.+.... +.||+|+||....|+ -.+.++.+++.|...
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~~~~--~~~p~vvKp~~g~gs---~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAFAED--LGFPFVVKPVDGSGS---RGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHHHHH--SSSSEEEEESS-STT---TT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHHH--cCCCEEEEcCccccC---CCEEEeCCHHHHHHH
Confidence 357888888888765 466899998863 2333333333 349999999998774 677889898888643
Q ss_pred -----------CCceeEEEeeeccceEEEEEEECceE
Q 024689 192 -----------EPPLVLQEFVNHGGVLFKVYIVGEAI 217 (264)
Q Consensus 192 -----------~~P~VlQEFINHggvLfKVYVIGd~v 217 (264)
..++++||||.-...=+-+++.+..+
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~ 104 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEV 104 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEE
T ss_pred HHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceE
Confidence 35899999999333444444444444
No 24
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=97.86 E-value=0.00022 Score=65.91 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=103.1
Q ss_pred HHhHHHhcCcEEEEecCCC-CCCC---CCCceEEEeccCchHH-HHHHHHHHHhCCCeEEeC-chhHHhhhcCHHHHHHH
Q 024689 49 LEGLARNKGILFVAIDQNR-PLSD---QGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQC 122 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~-pl~~---QgpfDvILHKltd~~~-~~~l~~y~~~hP~v~VID-P~~ai~~L~nR~~ml~~ 122 (264)
+....++.|.+.+.+|.+. .+-. ..++|+++-=+.+..- ...++.+.+.+ ++.++- .+.++...+|+..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEML-EIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHH
Confidence 4445577899999999864 2111 3467866554433211 13345555555 576654 56899999999999988
Q ss_pred HHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----C--CCcee
Q 024689 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L--EPPLV 196 (264)
Q Consensus 123 l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~----L--~~P~V 196 (264)
+++. .|.+|++..+... .. ....+.||+|+||....| |..+.+|.+++.|.. + ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~----~~--~~~~~~~P~vVKP~~ggs---s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDK----LV--AEDEISFPVAVKPSSGGS---SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchh----hh--hHhhcCCCEEEEeCCCCC---CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 8764 4678998877521 11 124689999999976433 577889999888752 1 24899
Q ss_pred EEEeeeccceEEEEEEECceE
Q 024689 197 LQEFVNHGGVLFKVYIVGEAI 217 (264)
Q Consensus 197 lQEFINHggvLfKVYVIGd~v 217 (264)
+||||. |.=|=|.|+|+..
T Consensus 170 vEefI~--G~E~tv~vl~~~~ 188 (296)
T PRK14569 170 IEQWVT--GKEITVAIVNDEV 188 (296)
T ss_pred EEcccc--cEEEEEEEECCcC
Confidence 999995 6889999999864
No 25
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.84 E-value=0.00026 Score=66.44 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=89.2
Q ss_pred CceEEEeccCchHH-HHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 024689 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (264)
Q Consensus 74 pfDvILHKltd~~~-~~~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~--~ 149 (264)
.+|+++-=+.+..- ...+|.+.+.+ +++.+=+ ..+....+|+..+.+.+++. .|.+|+++.+..... .
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELL-GIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchh
Confidence 57887665543210 12355555554 6666654 67888999999999998864 477899998864322 1
Q ss_pred hhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECc
Q 024689 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 150 ~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+.+ ...+.||+|+||....| |-.+.+|.+.+.|.. ...++++|+||. |.=|-|.|+|+
T Consensus 153 ~~~~~-~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~ 219 (333)
T PRK01966 153 SLAEI-EAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGN 219 (333)
T ss_pred hHHHH-HHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECC
Confidence 11222 24689999999987665 456778999887742 357899999998 68899999996
No 26
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.78 E-value=0.00055 Score=73.79 Aligned_cols=107 Identities=15% Similarity=0.384 Sum_probs=75.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+.++ -++++++.+.||..+.+.+.++ .+.+|+++.++. .++..+.. ..+.||+|+||....| +..
T Consensus 653 Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~s-~ee~~~~~--~~igyPvIVKP~~~~G---g~g 719 (1050)
T TIGR01369 653 GVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTATS-VEEAVEFA--SEIGYPVLVRPSYVLG---GRA 719 (1050)
T ss_pred CCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHHH--HhcCCCEEEEECCCCC---CCC
Confidence 45444 6789999999999999998875 466899998852 22222222 3578999999987766 477
Q ss_pred EEEEeccCccCC---------CCCceeEEEeeecc-ceEEEEEEECceEEE
Q 024689 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHG-GVLFKVYIVGEAIKV 219 (264)
Q Consensus 179 Malvf~~~gL~~---------L~~P~VlQEFINHg-gvLfKVYVIGd~v~v 219 (264)
|.++.+++.|.. -..|+++||||..| .+-.=+++-|+.+.+
T Consensus 720 v~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i 770 (1050)
T TIGR01369 720 MEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLI 770 (1050)
T ss_pred eEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEE
Confidence 999999888753 24589999999754 333334555555554
No 27
>PRK05586 biotin carboxylase; Validated
Probab=97.70 E-value=0.00044 Score=67.32 Aligned_cols=99 Identities=13% Similarity=0.236 Sum_probs=71.0
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEE
Q 024689 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (264)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Ma 180 (264)
+--++++++.+.||..+-+.+.+. .|.+|++. .++ +.+++.+.. ..+.||+|+||.... .|..+.
T Consensus 103 ~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~~--~~igyPvvvKP~~gg---gg~Gv~ 169 (447)
T PRK05586 103 IGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEIA--KEIGYPVMVKASAGG---GGRGIR 169 (447)
T ss_pred ECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCeeE
Confidence 557789999999999999988764 46688764 333 222222222 357899999997644 478899
Q ss_pred EEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 181 LAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 181 lvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
++.+++.|.+. +.++++||||... .-|-|.|++|
T Consensus 170 ~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-~ei~v~v~~d 216 (447)
T PRK05586 170 IVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-KHIEFQILGD 216 (447)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-eEEEEEEEEC
Confidence 99998887432 3689999999854 4477777765
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.70 E-value=0.00045 Score=69.67 Aligned_cols=147 Identities=16% Similarity=0.266 Sum_probs=99.7
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCC--CCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHH
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSD--QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~--QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (264)
..++..|+++|+.++.+|-+..+-. +| -+.++ +. . ....+.+..+++...|+..+.+.|+
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g-~~~~~--------~~------~---s~~~~~s~~ai~~~~DK~~tk~lL~ 306 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFRLSLG-GRSIR--------CR------E---SLSELTSAVAMSLCDDKRLTRRLVS 306 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEEecCC-ceEEE--------EE------e---ccCCCCCHHHHHHhcCHHHHHHHHH
Confidence 4588899999999999874432110 11 11111 00 1 1123448889999999999999888
Q ss_pred hccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE-EeccCccCC-------CCCcee
Q 024689 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEPPLV 196 (264)
Q Consensus 125 ~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal-vf~~~gL~~-------L~~P~V 196 (264)
+. .|.+|+...+. +.++..+.+++.| |+|+||.... .+..|.+ +.+++.|.. ...+++
T Consensus 307 ~a-------GIpVP~~~~~~-~~~~~~~~~~~~G---~vVVKP~~G~---~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vl 372 (547)
T TIGR03103 307 EA-------GLQVPEQQLAG-NGEAVEAFLAEHG---AVVVKPVRGE---QGKGISVDVRTPDDLEAAIAKARQFCDRVL 372 (547)
T ss_pred Hc-------CcCCCCEEEEC-CHHHHHHHHHHhC---CEEEEECCCC---CCcCeEEecCCHHHHHHHHHHHHhcCCcEE
Confidence 64 46799998875 2233333344444 7999997653 4667776 778777642 346899
Q ss_pred EEEeeeccceEEEEEEECceEEEEEecCCCC
Q 024689 197 LQEFVNHGGVLFKVYIVGEAIKVVRRFSLPD 227 (264)
Q Consensus 197 lQEFINHggvLfKVYVIGd~v~vv~R~SLpN 227 (264)
+|+||. |.=|.|+|||+++..+.+.--|+
T Consensus 373 vEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~ 401 (547)
T TIGR03103 373 LERYVP--GEDLRLVVIDFEVVAAAVRRPPE 401 (547)
T ss_pred EEEecc--CCeEEEEEECCEEEEEEEecCcE
Confidence 999995 78899999999999876654444
No 29
>PRK08462 biotin carboxylase; Validated
Probab=97.66 E-value=0.00032 Score=67.99 Aligned_cols=142 Identities=15% Similarity=0.230 Sum_probs=92.4
Q ss_pred hccc-hhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeE-EeCchhHHhhhcCHHHH
Q 024689 42 KSFL-QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVT-VLDPPYAIQHLHNRQSM 119 (264)
Q Consensus 42 ~~f~-~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~-VIDP~~ai~~L~nR~~m 119 (264)
.++. .+.++.+|++.+++.+--=.. . ++.. ..+.+..+++ ++. +--++++++...|+..|
T Consensus 60 ~~y~~~~~l~~~~~~~~~D~i~pg~g-~-------------lse~---~~~a~~~e~~-Gi~~~g~~~~~~~~~~dK~~~ 121 (445)
T PRK08462 60 ESYLNIPAIISAAEIFEADAIFPGYG-F-------------LSEN---QNFVEICSHH-NIKFIGPSVEVMALMSDKSKA 121 (445)
T ss_pred cccCCHHHHHHHHHHcCCCEEEECCC-c-------------cccC---HHHHHHHHHC-CCeEECcCHHHHHHhCCHHHH
Confidence 3553 567999999999887643221 1 1211 1233444454 454 45788999999999999
Q ss_pred HHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC------
Q 024689 120 LQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------ 191 (264)
Q Consensus 120 l~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L------ 191 (264)
.+.+.+.. |.+|+.. .++ +..+..+.. ..+.||+|+||....| |..|.++.+++.|...
T Consensus 122 r~~l~~~g-------Ip~pp~~~~~~~-~~~~~~~~~--~~~g~PvvvKP~~g~g---s~Gv~~v~~~~eL~~~~~~~~~ 188 (445)
T PRK08462 122 KEVMKRAG-------VPVIPGSDGALK-SYEEAKKIA--KEIGYPVILKAAAGGG---GRGMRVVEDESDLENLYLAAES 188 (445)
T ss_pred HHHHHHCC-------CCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEeCCCCC---CCCeEEECCHHHHHHHHHHHHH
Confidence 99988753 5566643 232 222222222 3578999999977655 6788999998887531
Q ss_pred -------CCceeEEEeeeccceEEEEEEECc
Q 024689 192 -------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 192 -------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..++++||||.. +.-|-|.++||
T Consensus 189 ~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~~ 218 (445)
T PRK08462 189 EALSAFGDGTMYMEKFINN-PRHIEVQILGD 218 (445)
T ss_pred HHHhccCCCcEEEeccCCC-CeEEEEEEEEC
Confidence 347999999975 34467777754
No 30
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.66 E-value=0.00051 Score=64.95 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=85.7
Q ss_pred CceE---EEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--
Q 024689 74 PFDI---VLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-- 147 (264)
Q Consensus 74 pfDv---ILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~-- 147 (264)
.+|+ .+|.-.+++ ..+|.+.+.. +++++ -++.++...+|+..+.+.+.+. .|.+|+++.+....
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~~-gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDTL-GIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHHc-CcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccc
Confidence 3566 445544442 1244444443 46665 5678999999999999998764 47789999885321
Q ss_pred ---CChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECc
Q 024689 148 ---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 148 ---~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.+..+.+ ..+.||+|+||....| |....++.+++.|.. ...++++||||. |.=|=|-|+|+
T Consensus 158 ~~~~~~~~~~--~~l~~PvvVKP~~ggs---S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~ 228 (347)
T PRK14572 158 NSPRKTLLKL--ESLGFPQFLKPVEGGS---SVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLER 228 (347)
T ss_pred cChHHHHHHH--HhcCCCEEEecCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeC
Confidence 1111222 3589999999977533 467789999887742 246899999996 78899999974
No 31
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.61 E-value=0.0012 Score=71.23 Aligned_cols=100 Identities=17% Similarity=0.363 Sum_probs=70.7
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 024689 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (264)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~ 184 (264)
-++++++...||..+.+.+.++ .|.+|+++.+.. .++..+.. ..+.||+|+||.-..| +..|.++.+
T Consensus 659 ~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvvVKP~~~~G---g~Gv~iv~~ 725 (1066)
T PRK05294 659 TSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEVA--EEIGYPVLVRPSYVLG---GRAMEIVYD 725 (1066)
T ss_pred CCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHH--HhcCCCeEEEeCCCCC---CCcEEEECC
Confidence 5688999999999999988875 466899998852 22222222 3578999999966544 578999999
Q ss_pred cCccCC---------CCCceeEEEeeecc-ceEEEEEEECceE
Q 024689 185 QYSLKK---------LEPPLVLQEFVNHG-GVLFKVYIVGEAI 217 (264)
Q Consensus 185 ~~gL~~---------L~~P~VlQEFINHg-gvLfKVYVIGd~v 217 (264)
++.|.. -..|+++||||... ..-.=+++-|+.+
T Consensus 726 ~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v 768 (1066)
T PRK05294 726 EEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDV 768 (1066)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeE
Confidence 888752 24689999999755 3333344445533
No 32
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.60 E-value=0.00063 Score=65.48 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=73.7
Q ss_pred HHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeecc
Q 024689 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169 (264)
Q Consensus 91 l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlv 169 (264)
+.+..+++ .+.++ -++++++...|+..|-+.+++. .|.+|++..+++ .++..+.+ ..+.||+|+||..
T Consensus 78 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~~~P~VvKP~~ 146 (420)
T PRK00885 78 IVDAFRAA-GLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFTD-AEEALAYL--DEKGAPIVVKADG 146 (420)
T ss_pred HHHHHHHC-CCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEeCC
Confidence 33333433 55555 5677899999999999998874 466899988852 22222222 3478999999976
Q ss_pred ccCCCCceeEEEEeccCccCC-------------CCCceeEEEeeeccceEEEEEEECc
Q 024689 170 ADGSAKSHELSLAYDQYSLKK-------------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 170 A~Gs~~SH~Malvf~~~gL~~-------------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..| |..+.++.+++.|.. ...++++|||+. |.=|=|.++.|
T Consensus 147 ~~g---s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 147 LAA---GKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred CCC---CCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 554 456889988776531 235899999997 45666666543
No 33
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.51 E-value=0.00044 Score=73.16 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=81.0
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE-Ee
Q 024689 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AY 183 (264)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal-vf 183 (264)
|+..+++...|+..+.+.|++. .|.+|+...+.. .++..+... .+.||+|+||....+ +..+.+ +.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~-------GIpvP~~~~~~s-~~ea~~~~~--~ig~PvVVKP~~g~~---G~GV~l~v~ 269 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDA-------GVPVPEGTVVQS-AEDAWEAAQ--DLGYPVVIKPYDGNH---GRGVTINIL 269 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEECCCCC---ccCEEEEeC
Confidence 5677999999999999988864 467899988752 222233332 357999999996543 456776 77
Q ss_pred ccCccCC-------CCCceeEEEeeeccceEEEEEEECceEEEEEecCCCCC
Q 024689 184 DQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (264)
Q Consensus 184 ~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~ 228 (264)
+++.|.. ...++++|+||. |.-|-|+|+|+++..+.|.=-|++
T Consensus 270 s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V 319 (864)
T TIGR02068 270 TRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHV 319 (864)
T ss_pred CHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCce
Confidence 7766642 246899999996 789999999999999877766664
No 34
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.51 E-value=0.002 Score=61.82 Aligned_cols=136 Identities=16% Similarity=0.202 Sum_probs=91.5
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHh
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~ 125 (264)
..+..+|++.++++|-+..+.|| ...+.+..+++ .+.++ -++++++...|+..+-+.+++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l------------------~~~~~d~l~~~-Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPL------------------IDGLADILRAN-GFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHH------------------HHHHHHHHHhC-CCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 45778999999988887776654 23444444444 45555 556888999999999888886
Q ss_pred ccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC---------CCCcee
Q 024689 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---------LEPPLV 196 (264)
Q Consensus 126 l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~---------L~~P~V 196 (264)
. .|.+|++..+.. .++..+.+ ..+.||+|+||.-. +.+..+.++.+.+.|.. ...+++
T Consensus 78 ~-------gIptp~~~~~~~-~~ea~~~~--~~~g~PvVvKp~~~---~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVER-KKDALTYI--ENCELPVVVKKDGL---AAGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCCC---CCCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 4 466898888752 22222333 25789999999743 35678889999776631 135899
Q ss_pred EEEeeeccceEEEEE--EECce
Q 024689 197 LQEFVNHGGVLFKVY--IVGEA 216 (264)
Q Consensus 197 lQEFINHggvLfKVY--VIGd~ 216 (264)
+||||.- .=|=|. +-|+.
T Consensus 145 vEe~i~G--~E~sv~~~~~g~~ 164 (379)
T PRK13790 145 FETFLEG--EEFSLMTFVNGDL 164 (379)
T ss_pred EEEcccC--ceEEEEEEeeCCE
Confidence 9999963 444444 44553
No 35
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.50 E-value=0.0012 Score=69.91 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=67.0
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 024689 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (264)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~ 184 (264)
.++++++...|+..|-+.+.+. .+.+|+++.++. ..+..+.. ..+.||+|+||.-..|+ ..+.++.+
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~-~~e~~~~~--~~~~~PvVVKP~~g~gS---~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALAL-RAVALDAL--DGLTYPVVVKPRMGSGS---VGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHHHH--HhCCCCEEEEeCCCCCC---CCeEEECC
Confidence 3578899999999999988864 466899998863 22222222 35789999999887665 56778888
Q ss_pred cCccCC--------CCCceeEEEeeeccceEEEEEEE
Q 024689 185 QYSLKK--------LEPPLVLQEFVNHGGVLFKVYIV 213 (264)
Q Consensus 185 ~~gL~~--------L~~P~VlQEFINHggvLfKVYVI 213 (264)
.+.|.. ...++++||||. |.-|=|-++
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i 198 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETL 198 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEE
Confidence 776632 256899999997 345555444
No 36
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.48 E-value=0.0018 Score=62.14 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccc-eEeeec
Q 024689 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPL 168 (264)
Q Consensus 91 l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fP-lI~KPl 168 (264)
+.+..+++ .+.++ -++++++...||..|.+.+.+. .|.+|++..++. .++..+.+ ..+.|| +|+||.
T Consensus 80 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~-~~~~~~~~--~~~g~P~~VvKp~ 148 (423)
T TIGR00877 80 LVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFTD-PEEALSYI--QEKGAPAIVVKAD 148 (423)
T ss_pred HHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCeEEEEEC
Confidence 33444444 45544 6778999999999999998875 356899988853 22223333 357899 999997
Q ss_pred cccCCCCceeEEEEeccCccCC------------CCCceeEEEeeeccceEEEEEEE
Q 024689 169 VADGSAKSHELSLAYDQYSLKK------------LEPPLVLQEFVNHGGVLFKVYIV 213 (264)
Q Consensus 169 vA~Gs~~SH~Malvf~~~gL~~------------L~~P~VlQEFINHggvLfKVYVI 213 (264)
...| |..+.++.+.+.+.. -..++++||||+. .=|=|-++
T Consensus 149 ~~~g---g~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G--~E~sv~~~ 200 (423)
T TIGR00877 149 GLAA---GKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG--EEVSLLAF 200 (423)
T ss_pred CCCC---CCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC--ceEEEEEE
Confidence 6555 456788888766532 1247999999983 45555555
No 37
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.45 E-value=0.0017 Score=61.15 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=85.2
Q ss_pred CceEEEeccCchHH-HHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChh
Q 024689 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (264)
Q Consensus 74 pfDvILHKltd~~~-~~~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~ 151 (264)
.+|+++--+.+..- ...+|.+.+.. ++..+-+ +.+....+|+..+.+.+++. .|.+|+++.+.... .
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~-- 158 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELS-GIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-R-- 158 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-h--
Confidence 46766654443210 23455565544 6666644 56788889999998888864 46789998886322 1
Q ss_pred HHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 152 ~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
+....+.||+|+||....| |-.+.+|.+.+.|.. ...++++||||. |.=|=|-|+|+.
T Consensus 159 --~~~~~l~~P~iVKP~~~gs---S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~ 223 (343)
T PRK14568 159 --PDAATLTYPVFVKPARSGS---SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNG 223 (343)
T ss_pred --hhhhhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCC
Confidence 1124689999999987644 567778999888752 356899999997 466677888863
No 38
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.39 E-value=0.00048 Score=74.43 Aligned_cols=101 Identities=18% Similarity=0.388 Sum_probs=73.0
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
++.++ -++++++.+.||..+.+.+.++ .+.+|++..+.. .++..+. ...+.||+|+||....| +..
T Consensus 654 Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~--~~~igyPvVVKP~~~~G---g~g 720 (1068)
T PRK12815 654 GLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAF--AKRIGYPVLIRPSYVIG---GQG 720 (1068)
T ss_pred CCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHH--HHhcCCCEEEEeCCCCC---CCC
Confidence 44443 5689999999999999998875 466899988752 2222222 24578999999977655 578
Q ss_pred EEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECc
Q 024689 179 LSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 179 Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
|.++.+++.|.. -..|+++|+||+ |.-|=|.++.|
T Consensus 721 v~iv~~~eeL~~~l~~~~s~~~~vlIeefI~--G~E~~Vd~i~d 762 (1068)
T PRK12815 721 MAVVYDEPALEAYLAENASQLYPILIDQFID--GKEYEVDAISD 762 (1068)
T ss_pred EEEECCHHHHHHHHHHhhcCCCCEEEEEeec--CceEEEEEEEc
Confidence 999999888753 256999999993 45566666654
No 39
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.38 E-value=0.00013 Score=64.57 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=53.9
Q ss_pred cccCCceEEEccCCCChhH-HHHhcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccc
Q 024689 134 KVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGG 205 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~-~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~-------~L~~P~VlQEFINHgg 205 (264)
.|.||++++++........ .-....+.||+|+||... || |-.+.+|.+.+.|. +...+++++||| +|
T Consensus 6 gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G 80 (203)
T PF07478_consen 6 GIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SG 80 (203)
T ss_dssp T-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SS
T ss_pred CCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cc
Confidence 5889999999743211110 112457899999999854 43 66678899988875 346799999999 99
Q ss_pred eEEEEEEECc
Q 024689 206 VLFKVYIVGE 215 (264)
Q Consensus 206 vLfKVYVIGd 215 (264)
.=|-|-|+|+
T Consensus 81 ~E~tv~vl~~ 90 (203)
T PF07478_consen 81 REFTVGVLGN 90 (203)
T ss_dssp EEEEEEEEES
T ss_pred cceEEEEEec
Confidence 9999999993
No 40
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.31 E-value=0.0079 Score=61.23 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=99.1
Q ss_pred CCcEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCchHH------------------
Q 024689 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEW------------------ 87 (264)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfD-vILHKltd~~~------------------ 87 (264)
....+||....- .....+...|++.|++++.+|.+..-..-.-.| .++...+|.+.
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 455678887776 222345567888999999999865311100011 22223333210
Q ss_pred -HHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEee
Q 024689 88 -RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAK 166 (264)
Q Consensus 88 -~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~K 166 (264)
...+ ++.+++ .+.|.-++++++...||..+-+.+.+. .|.+|++..++. .+++.+.+ ..+.||+|+|
T Consensus 95 ~~~~l-~~le~~-gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~~--~~ig~P~VvK 162 (577)
T PLN02948 95 DVDTL-EALEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKAG--DLFGYPLMLK 162 (577)
T ss_pred CHHHH-HHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHHH--HhcCCcEEEE
Confidence 1223 233333 233567789999999999999988764 477899998853 22222222 3578999999
Q ss_pred eccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeec
Q 024689 167 PLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH 203 (264)
Q Consensus 167 PlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINH 203 (264)
|.... ..+..+.++.+++.|.. ...++++++||+.
T Consensus 163 P~~gg--s~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 163 SRRLA--YDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred eCCCC--CCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 97542 23456778999887742 2468999999976
No 41
>PLN02735 carbamoyl-phosphate synthase
Probab=97.16 E-value=0.0064 Score=66.19 Aligned_cols=153 Identities=14% Similarity=0.298 Sum_probs=100.1
Q ss_pred HHhHHHhcCcEEEEecCCCCCCC--C----------------------CCceEEEeccCch---HHHHHHHHHHHhCC--
Q 024689 49 LEGLARNKGILFVAIDQNRPLSD--Q----------------------GPFDIVLHKLTGK---EWRQILEEYRQTHP-- 99 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl~~--Q----------------------gpfDvILHKltd~---~~~~~l~~y~~~hP-- 99 (264)
.+..+++.|++.+-+|-+-.... . ..+|.|+=-.-++ .+...+.++..+++
T Consensus 600 ~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~f 679 (1102)
T PLN02735 600 ASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPP 679 (1102)
T ss_pred HHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccch
Confidence 44567999999998887654322 1 1123322222111 23345566655554
Q ss_pred ------Ce-EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccC
Q 024689 100 ------EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (264)
Q Consensus 100 ------~v-~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~G 172 (264)
.+ ++--++++++...||..+-+.+.++ .|.+|++..++. .++..+. ...+.||+|+||...-|
T Consensus 680 a~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~~--a~~iGyPvvVKP~~g~g 749 (1102)
T PLN02735 680 SASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALAI--AKRIGYPVVVRPSYVLG 749 (1102)
T ss_pred hhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHHH--HHhcCCCeEEEeCCCCC
Confidence 33 4567789999999999999988875 467888877752 2222222 24689999999977444
Q ss_pred CCCceeEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEECc
Q 024689 173 SAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 173 s~~SH~Malvf~~~gL~~L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
+..|.+|.+++.|... ..|+++|+||.+ |.=+=|-+++|
T Consensus 750 ---G~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~vl~D 797 (1102)
T PLN02735 750 ---GRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDALAD 797 (1102)
T ss_pred ---CCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEEEEC
Confidence 5689999998887521 358999999964 56666777765
No 42
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.14 E-value=0.0032 Score=68.07 Aligned_cols=141 Identities=16% Similarity=0.238 Sum_probs=88.9
Q ss_pred HHhHHHhcCcEEEEecCCCCCC------------------------CCCCceEEEeccCchH---HHHHHH--HHHHhCC
Q 024689 49 LEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKE---WRQILE--EYRQTHP 99 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl~------------------------~QgpfDvILHKltd~~---~~~~l~--~y~~~hP 99 (264)
+...+++.|++.+-+|.+-... ++..+|+|+-=+.+.. ....+. ...+++
T Consensus 33 ~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~- 111 (1066)
T PRK05294 33 ACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKY- 111 (1066)
T ss_pred HHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHC-
Confidence 4556677899999888654210 1124455554433221 111111 122333
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
++.++ =++++++...||..+.+.++++ .+.+|++..++. .+++.+.. ..+.||+|+||.... .+..
T Consensus 112 Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~~--~~ig~PvVVKP~~g~---gg~G 178 (1066)
T PRK05294 112 GVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEVA--EEIGYPVIIRPSFTL---GGTG 178 (1066)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHHH--HHcCCCeEEEcCCCC---CCCC
Confidence 45544 4678999999999999988875 466899998853 22222222 357899999998543 4567
Q ss_pred EEEEeccCccCCC---------CCceeEEEeeec
Q 024689 179 LSLAYDQYSLKKL---------EPPLVLQEFVNH 203 (264)
Q Consensus 179 Malvf~~~gL~~L---------~~P~VlQEFINH 203 (264)
+.++.+++.|... ..++++||||+.
T Consensus 179 v~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 179 GGIAYNEEELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 8899998887532 248999999974
No 43
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.08 E-value=0.0025 Score=61.16 Aligned_cols=127 Identities=14% Similarity=0.303 Sum_probs=89.3
Q ss_pred CceEEEeccC---chHHHHHHHHHHHhCCCeEEeCch-hHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC---
Q 024689 74 PFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD--- 146 (264)
Q Consensus 74 pfDvILHKlt---d~~~~~~l~~y~~~hP~v~VIDP~-~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~--- 146 (264)
.+|+++-=+. +++ ..+|.+.+.. +++.+=+- .+....+|+..+-+.+++. .|.+|++..++..
T Consensus 87 ~~D~vf~~lhG~~GEd--g~iqglle~~-giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~ 156 (364)
T PRK14570 87 EIDVVFPIVHGRTGED--GAIQGFLKVM-DIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYF 156 (364)
T ss_pred CCCEEEEcCCCCCCCc--CHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccc
Confidence 5887765553 333 3556666655 67777666 5889999999999888764 4678888887532
Q ss_pred --CCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 147 --ASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 147 --~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
..+..+.+ ...+.||+|+||....| |..+.+|.+++.|.. .+.++++||||. |.=+-|-|+|+.
T Consensus 157 ~~~~~~~~~~-~~~lg~PviVKP~~~Gs---S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~ 229 (364)
T PRK14570 157 LDKEGIKKDI-KEVLGYPVIVKPAVLGS---SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNE 229 (364)
T ss_pred cchHHHHHHH-HHhcCCCEEEEeCCCCC---CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCC
Confidence 11112222 24689999999965433 567899999887752 346899999998 788899999984
No 44
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.95 E-value=0.011 Score=63.92 Aligned_cols=142 Identities=15% Similarity=0.248 Sum_probs=91.2
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC------------------------CCCCceEEEeccCchH---HHHHH--HHHHHhC
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKE---WRQIL--EEYRQTH 98 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~------------------------~QgpfDvILHKltd~~---~~~~l--~~y~~~h 98 (264)
.++..+++.|++.|-+|.+-... ++..+|.|+-=+.++. ....+ +...+++
T Consensus 31 q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~ 110 (1050)
T TIGR01369 31 QACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKY 110 (1050)
T ss_pred HHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHC
Confidence 35666788899999888875310 1134566654332221 11111 1223333
Q ss_pred CCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCce
Q 024689 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (264)
Q Consensus 99 P~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH 177 (264)
++.++ -++++++...||..+.+.+.++ .+.+|++..++. .++..+.. ..+.||+|+||...- .+.
T Consensus 111 -Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~~--~~igyPvIVKP~~g~---gg~ 176 (1050)
T TIGR01369 111 -GVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHS-VEEALAAA--KEIGYPVIVRPAFTL---GGT 176 (1050)
T ss_pred -CCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCC-HHHHHHHH--HHhCCCeEEECCCCC---CCC
Confidence 45554 7789999999999999998875 466899988853 22222222 357899999998544 456
Q ss_pred eEEEEeccCccCCC-------C--CceeEEEeeec
Q 024689 178 ELSLAYDQYSLKKL-------E--PPLVLQEFVNH 203 (264)
Q Consensus 178 ~Malvf~~~gL~~L-------~--~P~VlQEFINH 203 (264)
.+.++.+++.|... . .++++||||..
T Consensus 177 Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 177 GGGIAYNREELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred CeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 67799998877532 1 58999999984
No 45
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.93 E-value=0.0097 Score=58.23 Aligned_cols=138 Identities=12% Similarity=0.200 Sum_probs=89.1
Q ss_pred cchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchh-HHhhhcCHHHHHHH
Q 024689 44 FLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY-AIQHLHNRQSMLQC 122 (264)
Q Consensus 44 f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~-ai~~L~nR~~ml~~ 122 (264)
.....++++|++.++++|-+..+.++ .+-+-+..++. .+.++-|-. +.+...||..+-+.
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l------------------~~glad~~~~~-Gip~~Gp~~~aa~le~dK~~~K~~ 115 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPL------------------VAGFADWAAEL-GIPCFGPDSYCAQVEGSKHFAKSL 115 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHHc-CCCcCCCHHHHHHHHcCHHHHHHH
Confidence 34556778888888888877655544 23333333333 466666553 55667889988888
Q ss_pred HHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC----CC-------
Q 024689 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK----KL------- 191 (264)
Q Consensus 123 l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~----~L------- 191 (264)
+.+. .|.+|++..++ +.++..+.+. .+.||+|+||.- .+.+..+.++.+.+.+. .+
T Consensus 116 l~~~-------gIpt~~~~~~~-~~~ea~~~~~--~~~~PvVVKp~~---~~~gkGV~vv~~~eel~~a~~~~~~~~~~g 182 (426)
T PRK13789 116 MKEA-------KIPTASYKTFT-EYSSSLSYLE--SEMLPIVIKADG---LAAGKGVTVATEKKMAKRALKEIFKDKKFG 182 (426)
T ss_pred HHHc-------CCCCCCeEeeC-CHHHHHHHHH--hcCCCEEEEeCC---CCCCCcEEEECCHHHHHHHHHHHHhhcccc
Confidence 8864 46688888775 2222223332 468999999973 34567889999976553 11
Q ss_pred --CCceeEEEeeeccceEEEEEEECc
Q 024689 192 --EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 192 --~~P~VlQEFINHggvLfKVYVIGd 215 (264)
...+|+|||+.- .=|=|.+++|
T Consensus 183 ~~~~~vlIEEfl~G--~E~Sv~~~~d 206 (426)
T PRK13789 183 QSGNQVVIEEFMEG--QEASIFAISD 206 (426)
T ss_pred CCCCeEEEEECcCC--eEEEEEEEEC
Confidence 137999999973 5555655544
No 46
>PRK06524 biotin carboxylase-like protein; Validated
Probab=96.88 E-value=0.0045 Score=62.12 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=75.6
Q ss_pred HHHHHHhCCCeEE-eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC-CCChhHHHHhcCCccceEeeec
Q 024689 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPL 168 (264)
Q Consensus 91 l~~y~~~hP~v~V-IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~-~~~~~~~l~~agL~fPlI~KPl 168 (264)
+|...+.. .+.+ .=+..++...+||..+-+.++++ .|.+|+++.+..+ ..++.+....+++.||+++||.
T Consensus 118 iQ~lLE~l-GIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQA-GLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 45555554 3444 55567788899999888887654 4678888775322 1222223333459999999999
Q ss_pred cccCCCCceeEEEEeccCccCCC-----C-CceeEEEeeeccceEEEEEEECc
Q 024689 169 VADGSAKSHELSLAYDQYSLKKL-----E-PPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 169 vA~Gs~~SH~Malvf~~~gL~~L-----~-~P~VlQEFINHggvLfKVYVIGd 215 (264)
. |+ .|+.+.+|.+++.|... . ..+++|+||++.-+-.=+++-++
T Consensus 190 ~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~GrEitVev~vd~d 239 (493)
T PRK06524 190 Y--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIRNVEVCIEACVTRH 239 (493)
T ss_pred C--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccCcEEEEEEEEEeCC
Confidence 3 43 58999999998887532 2 46899999986655444555544
No 47
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.84 E-value=0.0043 Score=59.93 Aligned_cols=102 Identities=11% Similarity=0.213 Sum_probs=67.3
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEc-cCCCChhHHHHhcCCccceEeeeccccCCCCce
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~-~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH 177 (264)
++.++ -++++++...|+..|.+.+.+.+ |.+|++.... .+..+..+.+ ..+.||+|+||....| |+
T Consensus 99 g~~~~g~~~~~~~~~~dK~~~k~~l~~~g-------Ip~p~~~~~~~~~~~e~~~~~--~~~~~P~VvKP~~g~g---s~ 166 (450)
T PRK06111 99 GIVFIGPSADIIAKMGSKIEARRAMQAAG-------VPVVPGITTNLEDAEEAIAIA--RQIGYPVMLKASAGGG---GI 166 (450)
T ss_pred CCeEECCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcCcCcCCHHHHHHHH--HHhCCCEEEEeCCCCC---Cc
Confidence 35544 55888999999999999988753 5566652211 2222222222 3578999999976554 67
Q ss_pred eEEEEeccCccCC-------------CCCceeEEEeeeccceEEEEEEEC
Q 024689 178 ELSLAYDQYSLKK-------------LEPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 178 ~Malvf~~~gL~~-------------L~~P~VlQEFINHggvLfKVYVIG 214 (264)
.+.++.+++.|.. -..++++||||... .-+-+.+++
T Consensus 167 Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~ 215 (450)
T PRK06111 167 GMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP-RHIEIQLLA 215 (450)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC-cEEEEEEEE
Confidence 8899999887742 13589999999843 334554444
No 48
>PLN02735 carbamoyl-phosphate synthase
Probab=96.84 E-value=0.0082 Score=65.40 Aligned_cols=153 Identities=13% Similarity=0.215 Sum_probs=95.5
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC------------------------CCCCceEEEeccCch---HHHHHHH--HHHHhC
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGK---EWRQILE--EYRQTH 98 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~------------------------~QgpfDvILHKltd~---~~~~~l~--~y~~~h 98 (264)
.++..+++.|++.+-+|.+-... .+..+|.|+-=+-++ .....+. ...+++
T Consensus 48 q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~ 127 (1102)
T PLN02735 48 QACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKY 127 (1102)
T ss_pred HHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHC
Confidence 35667789999999999864211 112455555443222 1111221 122333
Q ss_pred CCeE-EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCc-cceEeeeccccCCCCc
Q 024689 99 PEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKS 176 (264)
Q Consensus 99 P~v~-VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~-fPlI~KPlvA~Gs~~S 176 (264)
++. +--++++++...||..+-+.+.++ .+.+|++..++. .++..+.. ..+. ||+|+||....|+.
T Consensus 128 -GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~eea~~~~--~~iG~yPvVVKP~~~~GG~-- 194 (1102)
T PLN02735 128 -GVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATT-LDECFEIA--EDIGEFPLIIRPAFTLGGT-- 194 (1102)
T ss_pred -CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCC-HHHHHHHH--HHhCCCCEEEEeCCCCCCC--
Confidence 333 335778889999999888888765 467899988853 22222222 2354 99999998865653
Q ss_pred eeEEEEeccCccCC---------CCCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKK---------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~---------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.+.++.+++.|.. ...++++||||.. ..=|=|=|++|
T Consensus 195 -Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G-~kE~ev~Vl~D 240 (1102)
T PLN02735 195 -GGGIAYNKEEFETICKAGLAASITSQVLVEKSLLG-WKEYELEVMRD 240 (1102)
T ss_pred -ceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC-CeEEEEEEEEc
Confidence 6679999888752 2458999999963 34455666665
No 49
>PLN02257 phosphoribosylamine--glycine ligase
Probab=96.79 E-value=0.011 Score=58.20 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=84.9
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHh
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~ 125 (264)
..+..+|++.++++|-+..+.|+ ...+.+..+++ .+.++ -+.++++...||..+-+.+.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~~-Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVKA-GIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHHC-CCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 45778888888888777765554 22333444443 45555 556788888999999998886
Q ss_pred ccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------------CC
Q 024689 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------------LE 192 (264)
Q Consensus 126 l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------------L~ 192 (264)
. .|.+|++..++. .++..+.+ ..+.||+|+||.-. ..+..+.++.+.+.+.+ ..
T Consensus 113 ~-------GIptp~~~~~~~-~~e~~~~~--~~~g~PvVVKp~~~---~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFTD-PAAAKKYI--KEQGAPIVVKADGL---AAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEcCCC---CCCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 5 467899888752 22222223 35789999999833 35678889998665521 13
Q ss_pred CceeEEEeeec
Q 024689 193 PPLVLQEFVNH 203 (264)
Q Consensus 193 ~P~VlQEFINH 203 (264)
.++++||||.-
T Consensus 180 ~~vlIEefi~G 190 (434)
T PLN02257 180 SEVVVEEFLDG 190 (434)
T ss_pred CeEEEEECCCC
Confidence 58999999973
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.75 E-value=0.0052 Score=59.59 Aligned_cols=102 Identities=11% Similarity=0.248 Sum_probs=68.7
Q ss_pred CeE-EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~-VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
++. +--++++++.+.|+..|.+.+.+.. |.+|++. .++ +.++..+.. ..+.||+|+||....| |
T Consensus 99 gi~~~g~~~~~~~~~~DK~~~r~~l~~~g-------Ip~pp~~~~~v~-~~~~~~~~~--~~~g~PvvvKP~~g~g---s 165 (451)
T PRK08591 99 GFTFIGPSAETIRLMGDKVTAKATMKKAG-------VPVVPGSDGPVD-DEEEALAIA--KEIGYPVIIKATAGGG---G 165 (451)
T ss_pred CCceECcCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCCC---C
Confidence 344 3468899999999999999988753 4566552 343 222222222 3578999999977644 6
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+.++.+++.|.+. .+++++||||.. +.-|=|-|+||
T Consensus 166 ~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (451)
T PRK08591 166 RGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-PRHIEIQVLAD 216 (451)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEc
Confidence 788899998877421 357999999974 44455555554
No 51
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.70 E-value=0.0055 Score=59.71 Aligned_cols=102 Identities=11% Similarity=0.235 Sum_probs=67.5
Q ss_pred CeE-EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~-VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
++. +--++++++.+.|+..+.+.+.+.. |.+|++. .++ +.++..+.. ..+.||+|+||....| |
T Consensus 99 Gi~~~g~~~~~~~~~~DK~~~r~~l~~~g-------ip~pp~~~~~~~-~~~e~~~~~--~~ig~PvvvKP~~g~g---s 165 (449)
T TIGR00514 99 GFTFIGPSAESIRLMGDKVSAIETMKKAG-------VPCVPGSDGLVE-DEEENVRIA--KRIGYPVIIKATAGGG---G 165 (449)
T ss_pred CCcEECcCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcccCcC-CHHHHHHHH--HHhCCCEEEEeCCCCC---C
Confidence 444 3467899999999999999988753 5566553 232 222222222 3578999999988665 5
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+.++.+++.|... ..++++||||.. +.-|=|-|++|
T Consensus 166 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (449)
T TIGR00514 166 RGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN-PRHVEIQVLAD 216 (449)
T ss_pred CccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-CeEEEEEEEEc
Confidence 678889998777421 357999999964 33344444443
No 52
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.69 E-value=0.02 Score=62.74 Aligned_cols=104 Identities=10% Similarity=0.192 Sum_probs=70.2
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE-EccCCCChhHHHHhcCCccceEeeeccccCCCCce
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV-IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~-i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH 177 (264)
.+.++ -++++++.+.|+..+.+.+.+.. |.+|++.. ...+.++..+.. ..+.||+|+||....| +.
T Consensus 99 Gi~fiGps~e~i~~~~DK~~ar~la~~~G-------VPvpp~t~~~v~~~eea~~~a--e~iGyPvIVKP~~GGG---Gr 166 (1143)
T TIGR01235 99 GIIFIGPKAEVMDQLGDKVAARNLAIKAG-------VPVVPGTDGPPETMEEVLDFA--AAIGYPVIIKASWGGG---GR 166 (1143)
T ss_pred CCcccCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcccCcCCHHHHHHHH--HHcCCCEEEEECCCCC---CC
Confidence 45544 55789999999999988887753 45665532 111222222222 3578999999965544 67
Q ss_pred eEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECce
Q 024689 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 178 ~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
.|.+|.+++.|... ..++++|+||.. +.=+-|-|+||.
T Consensus 167 G~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~reIeVqVlgD~ 217 (1143)
T TIGR01235 167 GMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PRHIEVQLLGDK 217 (1143)
T ss_pred ccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-CeEEEEEEEEeC
Confidence 89999998777421 358999999964 455778888775
No 53
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=96.66 E-value=0.0042 Score=61.16 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=69.2
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEE
Q 024689 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (264)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Ma 180 (264)
+--++++++.+.|+..+-+.+.+.. |.+|++. .+. +.++..+.. ..+.||+|+||....| +..|.
T Consensus 106 igps~~ai~~~~DK~~~r~~l~~~G-------Ip~~p~~~~~v~-~~~e~~~~~--~~igyPvvvKp~~ggg---g~Gv~ 172 (467)
T PRK12833 106 VGPDAQTIRTMGDKARARRTARRAG-------VPTVPGSDGVVA-SLDAALEVA--ARIGYPLMIKAAAGGG---GRGIR 172 (467)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCCcCcCcC-CHHHHHHHH--HHhCCCEEEEECCCCC---CCeEE
Confidence 3456789999999999999888753 4566553 343 222222222 3578999999977554 67899
Q ss_pred EEeccCccCC------------C-CCceeEEEeeeccceEEEEEEECce
Q 024689 181 LAYDQYSLKK------------L-EPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 181 lvf~~~gL~~------------L-~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
++.+++.|.. . ..++++|+||..+ .=+=|-|+||.
T Consensus 173 ~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~-~ei~v~v~~dg 220 (467)
T PRK12833 173 VAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA-RHIEVQILGDG 220 (467)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEeCC
Confidence 9999887753 1 4679999999863 55556667763
No 54
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.60 E-value=0.0095 Score=62.44 Aligned_cols=88 Identities=13% Similarity=0.235 Sum_probs=60.2
Q ss_pred cccCCceEEEccCCCChhHHHHhcCC-ccceEeeeccccCCCCceeEEEEec---cCccC-------CCCCceeEEEeee
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHELSLAYD---QYSLK-------KLEPPLVLQEFVN 202 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL-~fPlI~KPlvA~Gs~~SH~Malvf~---~~gL~-------~L~~P~VlQEFIN 202 (264)
.|.||.+.++... .+..+... .+ .||+|+||.-..++. ...++.+ .+.+. .....+++|+||.
T Consensus 487 GIPVP~g~~~~~~-~~a~~~~~--~~~g~PVVVKP~~g~~G~---GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~ 560 (737)
T TIGR01435 487 GFRVPFGDEFSSQ-ALALEAFS--LFENKAIVVKPKSTNYGL---GITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP 560 (737)
T ss_pred CcCCCCEEEECCH-HHHHHHHH--HhcCCCEEEeeCCCCCcC---CeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 5889999988532 11122222 23 689999999876544 3445544 33332 1245799999996
Q ss_pred ccceEEEEEEECceEEEEEecCCCCCC
Q 024689 203 HGGVLFKVYIVGEAIKVVRRFSLPDVT 229 (264)
Q Consensus 203 HggvLfKVYVIGd~v~vv~R~SLpN~~ 229 (264)
|.=|-|+|||+++..+.+.--+|+-
T Consensus 561 --G~EyRv~VIg~kvvaa~~R~Pa~Vi 585 (737)
T TIGR01435 561 --GTEYRFFVLNDKVEAVLLRVPANVT 585 (737)
T ss_pred --CCEEEEEEECCeEEEEEEECCCCEE
Confidence 8999999999999888777777775
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.58 E-value=0.021 Score=61.91 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=93.6
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC------------------------CCCCceEEEeccCch---HHHHHHH--HHHHhC
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGK---EWRQILE--EYRQTH 98 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~------------------------~QgpfDvILHKltd~---~~~~~l~--~y~~~h 98 (264)
.++..+++.|++.+-+|.+-... ....+|+|+-=+-++ .....+. ...+++
T Consensus 32 q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~ 111 (1068)
T PRK12815 32 QACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQY 111 (1068)
T ss_pred HHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHC
Confidence 35566678899888888664211 112456555433222 1111111 123333
Q ss_pred CCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCce
Q 024689 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (264)
Q Consensus 99 P~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH 177 (264)
++.++ -++++++...||..+-+.++++ .+.+|+++.++. .++..+.. ..+.||+|+||....| +.
T Consensus 112 -gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~~--~~igyPvVVKP~~g~g---G~ 177 (1068)
T PRK12815 112 -GVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAFA--EKIGFPIIVRPAYTLG---GT 177 (1068)
T ss_pred -CCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHHH--HHcCCCEEEEECcCCC---CC
Confidence 45554 5678999999999998888875 366899988853 22222222 3578999999986555 45
Q ss_pred eEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEECc
Q 024689 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 178 ~Malvf~~~gL~~L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.+.++.+++.|... ..++++||||+.. .=|=|=|++|
T Consensus 178 Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~-~E~sv~v~rD 223 (1068)
T PRK12815 178 GGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW-KEIEYEVMRD 223 (1068)
T ss_pred ceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-eEEEEEEEEc
Confidence 56789998877421 2489999999753 2233445554
No 56
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=96.55 E-value=0.0074 Score=60.29 Aligned_cols=103 Identities=12% Similarity=0.281 Sum_probs=71.2
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE--EccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~--i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
++.++ -++++++.+.|+..+-+.+++.. |.+|+... ++ +.++..+.. ..+.||+|+||....| +
T Consensus 99 gi~~iGps~~~i~~~~DK~~~k~~l~~~G-------Vpv~p~~~~~v~-~~~e~~~~a--~~igyPvvIKp~~GgG---G 165 (499)
T PRK08654 99 GIVFIGPSSDVIEAMGSKINAKKLMKKAG-------VPVLPGTEEGIE-DIEEAKEIA--EEIGYPVIIKASAGGG---G 165 (499)
T ss_pred CCcEECCCHHHHHHhCCHHHHHHHHHHcC-------cCCCCCcCcCCC-CHHHHHHHH--HHhCCCEEEEeCCCCC---C
Confidence 56655 45899999999999999888753 55555543 22 222222222 3578999999976554 6
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECce
Q 024689 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 177 H~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
..|.++.+++.|... ..++++|+||.. +.-+-|-|+||.
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~-~r~ieVqvl~d~ 217 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK-PRHIEIQILADK 217 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC-CcEEEEEEEEcC
Confidence 799999998887421 358999999975 344677777654
No 57
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=96.51 E-value=0.034 Score=54.56 Aligned_cols=143 Identities=9% Similarity=0.080 Sum_probs=86.2
Q ss_pred chhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHH
Q 024689 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (264)
Q Consensus 45 ~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l 123 (264)
..+.++++|++.++++|-.-.+.+|. .....++.+. .+.++ .+.++++...|+..|.+.+
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d~~l~-----------------~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l 113 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPDPVLA-----------------TPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLM 113 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCChHHH-----------------HHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHH
Confidence 34567788888888777655544441 1122233333 46665 7788999999999999988
Q ss_pred HhccccCCCCcccCC-ceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEecc-Cc----cC------CC
Q 024689 124 ADMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YS----LK------KL 191 (264)
Q Consensus 124 ~~l~~~~~~~~i~vP-~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~-~g----L~------~L 191 (264)
.+. .|.+| .+..+..+ .+..... ..+.||+|+||.-..|+ -.|.++.+. +. +. +-
T Consensus 114 ~~~-------gIptp~~~~~~~~~-~e~~~~~--~~~~~PvVVKP~~~sgg---kGV~v~~~~~~~~~ea~~~~~~~~~~ 180 (435)
T PRK06395 114 ERH-------NIPGNINFNACFSE-KDAARDY--ITSMKDVAVKPIGLTGG---KGVKVTGEQLNSVDEAIRYAIEILDR 180 (435)
T ss_pred HHC-------CcCCCcccceeCCh-HHHHHHH--HhhCCCEEEEeCCCCCC---CCeEEecCchhhHHHHHHHHHHHhCC
Confidence 764 46676 44344222 2222222 34589999999776665 466677532 12 21 12
Q ss_pred CCceeEEEeeeccceEEEEEEECceEEE
Q 024689 192 EPPLVLQEFVNHGGVLFKVYIVGEAIKV 219 (264)
Q Consensus 192 ~~P~VlQEFINHggvLfKVYVIGd~v~v 219 (264)
..++|+|||+.---+=.=+|+=|+.+.+
T Consensus 181 ~~~viIEEfl~G~E~Svd~~~dg~~~~~ 208 (435)
T PRK06395 181 DGVVLIEKKMTGEEFSLQAFSDGKHLSF 208 (435)
T ss_pred CCcEEEEeecCCceEEEEEEEcCCeEEE
Confidence 3689999999633333344556766644
No 58
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.25 E-value=0.045 Score=57.47 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=100.3
Q ss_pred hHHHhcCcEEEEecCCCCC----C---------------------C-CCCceEEEeccC---chHHHHHHHHHHHhCCCe
Q 024689 51 GLARNKGILFVAIDQNRPL----S---------------------D-QGPFDIVLHKLT---GKEWRQILEEYRQTHPEV 101 (264)
Q Consensus 51 ~~~~~~gi~fv~ID~~~pl----~---------------------~-QgpfDvILHKlt---d~~~~~~l~~y~~~hP~v 101 (264)
..-++.|.+.++||.++.- . + ...+|+++-=+. +++ ..+|.+.+.. ++
T Consensus 477 ~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~ged--g~iq~~le~~-gi 553 (809)
T PRK14573 477 KYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGED--GTMQGFLEII-GK 553 (809)
T ss_pred HhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCC--hHHHHHHHHc-CC
Confidence 3445679999998877630 0 0 024676654443 333 3455565554 35
Q ss_pred EEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--CC---hhHHHHhcCCccceEeeeccccCCCC
Q 024689 102 TVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--SS---IPDVVLKAGLTLPLVAKPLVADGSAK 175 (264)
Q Consensus 102 ~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~--~~---~~~~l~~agL~fPlI~KPlvA~Gs~~ 175 (264)
+.+= ++.+....+||..+-+.+++. .|.+|+++.++... .+ ..... ...+.||+|+||.-..|
T Consensus 554 py~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~~~~~~~~-~~~lg~P~iVKP~~~Gs--- 622 (809)
T PRK14573 554 PYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREPELCLAHI-VEAFSFPMFVKTAHLGS--- 622 (809)
T ss_pred CeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccChHHHHHHH-HHhcCCCEEEeeCCCCC---
Confidence 5443 667788899999988888764 47789998885311 11 11111 24689999999988654
Q ss_pred ceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 176 SHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 176 SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
|-.+.+|.+++.|.. .+.+++++|||. +|.=|=|-|+|+.
T Consensus 623 S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~ 669 (809)
T PRK14573 623 SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDG 669 (809)
T ss_pred CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCC
Confidence 467889999888752 356899999986 5677888899875
No 59
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=96.15 E-value=0.027 Score=55.71 Aligned_cols=103 Identities=10% Similarity=0.193 Sum_probs=68.5
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCc-eEEEc-cCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~-~v~i~-~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
.+.++ -++++++.+.|+..+.+.+.+.+ |.+|+ +..+. .+.++..+.. ..+.||+|+||....| +
T Consensus 98 Gi~~iGps~~~i~~~~DK~~~k~~l~~~g-------Ipvpp~~~~~~~~~~~~~~~~~--~~igyPvvvKP~~ggG---g 165 (478)
T PRK08463 98 GIIFIGPKSEVIRKMGNKNIARYLMKKNG-------IPIVPGTEKLNSESMEEIKIFA--RKIGYPVILKASGGGG---G 165 (478)
T ss_pred CCceecCCHHHHHhhCcHHHHHHHHHHcC-------CCCCCCccccCCCCHHHHHHHH--HHhCCCEEEEeCCCCC---C
Confidence 46655 55899999999999999888753 44544 33332 1222222222 3578999999977554 6
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..|.++.+++.|... +.++++|+||..+ .-+-+-|+||
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~-~~iev~v~~d 216 (478)
T PRK08463 166 RGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP-RHIEFQILGD 216 (478)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-eEEEEEEEEc
Confidence 788999998877431 3689999999753 3234445655
No 60
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.92 E-value=0.048 Score=60.10 Aligned_cols=139 Identities=14% Similarity=0.207 Sum_probs=85.8
Q ss_pred chhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEE-eCchhHHhhhcCHHHHHHHH
Q 024689 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCV 123 (264)
Q Consensus 45 ~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~V-IDP~~ai~~L~nR~~ml~~l 123 (264)
....++.+|++.|++.|-.=.. .+.+.. .+.+..++. .+.+ --++++++.+.|+..+-+.+
T Consensus 61 d~e~Il~~a~~~~idaIiPG~g-flsE~~----------------~~a~~~e~~-Gi~~iGps~ea~~~~~DK~~ar~ll 122 (1201)
T TIGR02712 61 DIDKILAAAKKTGAQAIHPGYG-FLSENA----------------AFAEACEAA-GIVFVGPTPEQIRKFGLKHTARELA 122 (1201)
T ss_pred CHHHHHHHHHHHCCCEEEeCCc-ccccCH----------------HHHHHHHHc-CCcEECCCHHHHHHhcCHHHHHHHH
Confidence 3456889999999876532111 122111 122333333 4543 45689999999999988888
Q ss_pred HhccccCCCCcccC-CceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----C-------
Q 024689 124 ADMNLSNSYGKVDV-PRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L------- 191 (264)
Q Consensus 124 ~~l~~~~~~~~i~v-P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~----L------- 191 (264)
.+.+ |.+ |.+..++ +.++..+.. ..+.||+|+||....| +..|.++.+++.|.. +
T Consensus 123 ~~~G-------VPt~p~~~lv~-s~dea~~~a--~~igyPvVVKP~~ggG---G~GV~iv~~~eEL~~a~~~~~~~~~~~ 189 (1201)
T TIGR02712 123 EAAG-------VPLLPGTGLLS-SLDEALEAA--KEIGYPVMLKSTAGGG---GIGMQKCDSAAELAEAFETVKRLGESF 189 (1201)
T ss_pred HHCC-------CCCCCceeecC-CHHHHHHHH--HhcCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHHHHHHh
Confidence 7653 454 4354553 222222222 4578999999987654 678999999887741 1
Q ss_pred --CCceeEEEeeeccceEEEEEEECc
Q 024689 192 --EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 192 --~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..++++||||..+ .=+=|.|+||
T Consensus 190 f~~~~vlVEefI~g~-~eveV~v~~D 214 (1201)
T TIGR02712 190 FGDAGVFLERFVENA-RHVEVQIFGD 214 (1201)
T ss_pred cCCCcEEEEecCCCC-EEEEEEEEEC
Confidence 3579999999853 3445555543
No 61
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=95.90 E-value=0.077 Score=55.92 Aligned_cols=185 Identities=23% Similarity=0.260 Sum_probs=118.6
Q ss_pred cEEEEEEechhhhhccchhh-HHhHHHhcCcEEE----EecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEE
Q 024689 29 LVVVGYALTSKKTKSFLQPK-LEGLARNKGILFV----AIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (264)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~-l~~~~~~~gi~fv----~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~V 103 (264)
..+||.|.-+||.++==-.. +..++.-.=|+.| .+=++.|.+.=--.||+|-=.+.-==-+..+.|++..-. .|
T Consensus 40 ~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnP-Fv 118 (1018)
T KOG1057|consen 40 QIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP-FV 118 (1018)
T ss_pred ceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCC-ee
Confidence 35999999999876532111 2223322223333 223455655555567766544432113456788877644 45
Q ss_pred eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCC-hhHH-HH------hcC--CccceEeeeccccCC
Q 024689 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-IPDV-VL------KAG--LTLPLVAKPLVADGS 173 (264)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~-~~~~-l~------~ag--L~fPlI~KPlvA~Gs 173 (264)
|.-++-.+.|.||...|+.|+.. .|.+|++..++.+... -... +. -.| ..=|+|-||+-|
T Consensus 119 iNdL~mQyll~DRR~Vy~iLe~~-------gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~--- 188 (1018)
T KOG1057|consen 119 INDLDMQYLLQDRREVYSILEAE-------GIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA--- 188 (1018)
T ss_pred eccccHHHHHHHHHHHHHHHHHc-------CCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc---
Confidence 67788999999999999998863 5778999888755431 1111 11 123 345999999974
Q ss_pred CCceeEEEEecc---CccCC---------------C----CCceeEEEeeeccceEEEEEEECceEE-EEEecCC
Q 024689 174 AKSHELSLAYDQ---YSLKK---------------L----EPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFSL 225 (264)
Q Consensus 174 ~~SH~Malvf~~---~gL~~---------------L----~~P~VlQEFINHggvLfKVYVIGd~v~-vv~R~SL 225 (264)
+-|.++|-|-. .|-.. + .--.+.-||.+-+|.--|||-||-.+. .-.|+|.
T Consensus 189 -EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSP 262 (1018)
T KOG1057|consen 189 -EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP 262 (1018)
T ss_pred -ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCc
Confidence 78999998862 12211 1 225899999999999999999996554 4678875
No 62
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.75 E-value=0.035 Score=54.76 Aligned_cols=101 Identities=11% Similarity=0.177 Sum_probs=66.8
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE--EccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~--i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
++.++ -++++++.+.|+..+.+.+.+.. |.+|++.. ++ +.++..+.. ..+.||+|+||....| +
T Consensus 98 Gi~~igps~~~i~~~~DK~~~r~~l~~~G-------Ip~pp~~~~~~~-~~~e~~~~~--~~igyPvvvKp~~ggG---g 164 (472)
T PRK07178 98 GIKFIGPSAEVIRRMGDKTEARRAMIKAG-------VPVTPGSEGNLA-DLDEALAEA--ERIGYPVMLKATSGGG---G 164 (472)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHCC-------CCCCCCcCcCCC-CHHHHHHHH--HHcCCcEEEEeCCCCC---C
Confidence 45544 56899999999999999888753 45655542 22 222222222 4578999999977554 6
Q ss_pred eeEEEEeccCccCC-------------CCCceeEEEeeeccceEEEEEEEC
Q 024689 177 HELSLAYDQYSLKK-------------LEPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 177 H~Malvf~~~gL~~-------------L~~P~VlQEFINHggvLfKVYVIG 214 (264)
..|.++.+++.|.. -..++++|+||..+ .=+=|-|+|
T Consensus 165 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~-~eiev~v~~ 214 (472)
T PRK07178 165 RGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP-KHIEVQILA 214 (472)
T ss_pred CCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC-eEEEEEEEE
Confidence 78999999888753 13579999999643 323444444
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.75 E-value=0.014 Score=63.85 Aligned_cols=102 Identities=15% Similarity=0.279 Sum_probs=68.5
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCc-eE-EEccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~-~v-~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
++.++ -++++++.+.|+..+.+.+.+.. |.+|+ +. .+. +.+++.+.. ..+.||+|+||....| +
T Consensus 103 Gi~fiGps~eai~~~~DK~~~r~~l~~~G-------VPv~P~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---G 169 (1146)
T PRK12999 103 GITFIGPTAEVLRLLGDKVAARNAAIKAG-------VPVIPGSEGPID-DIEEALEFA--EEIGYPIMLKASAGGG---G 169 (1146)
T ss_pred CCcccCCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCCC---C
Confidence 45544 55889999999999999888753 44544 33 232 222222222 3578999999987665 6
Q ss_pred eeEEEEeccCccCC------------C-CCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~------------L-~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..|.+|.+++.|.. + ..++++|+||.. +.-+=|-|+||
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g-~~~ieVqvl~D 220 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN-PRHIEVQILGD 220 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-CeEEEEEEEEE
Confidence 78999999887742 1 468999999974 33355556654
No 64
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=95.18 E-value=0.11 Score=49.73 Aligned_cols=126 Identities=14% Similarity=0.236 Sum_probs=83.9
Q ss_pred HHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccc
Q 024689 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNL 128 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~ 128 (264)
+++.|+++||+ +|+-..+.+...+.-.+|.+.-=.+.+-...+.++.+.|...+++.+++.
T Consensus 58 ~l~~C~~~~Id-----------------v~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~-- 118 (329)
T PF15632_consen 58 CLDFCKEHGID-----------------VFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEAN-- 118 (329)
T ss_pred HHHHHHHhCCe-----------------EEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhC--
Confidence 55677777654 44444444445566667777766666646699999999999999998863
Q ss_pred cCCCCcccCCceEEEccCCCChhHHHHhcCCccc---eEeeeccccCCCCceeEEEEe-ccCccCC--------------
Q 024689 129 SNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP---LVAKPLVADGSAKSHELSLAY-DQYSLKK-------------- 190 (264)
Q Consensus 129 ~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fP---lI~KPlvA~Gs~~SH~Malvf-~~~gL~~-------------- 190 (264)
.+.+|.++.+++ .+++.... +.+++| +.+||....|+. ..-++. +...+..
T Consensus 119 -----~ipvp~~~~v~t-~~el~~a~--~~l~~~~~~~CvKP~~g~gg~---GFr~l~~~~~~l~~l~~~~~~~i~~~~~ 187 (329)
T PF15632_consen 119 -----GIPVPPYWRVRT-ADELKAAY--EELRFPGQPLCVKPAVGIGGR---GFRVLDESRDELDALFEPDSRRISLDEL 187 (329)
T ss_pred -----CCCCCCEEEeCC-HHHHHHHH--HhcCCCCceEEEecccCCCcc---eEEEEccCcchHHHhcCCCcceeCHHHH
Confidence 467999999862 33333222 356666 999999998863 444554 2233321
Q ss_pred --------CCCceeEEEeeecc
Q 024689 191 --------LEPPLVLQEFVNHG 204 (264)
Q Consensus 191 --------L~~P~VlQEFINHg 204 (264)
--+|+++|||..--
T Consensus 188 ~~~l~~~~~~~~llvMeyL~G~ 209 (329)
T PF15632_consen 188 LAALQRSEEFPPLLVMEYLPGP 209 (329)
T ss_pred HHHHhccCCCCCcEEecCCCCC
Confidence 13699999999644
No 65
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=94.85 E-value=0.48 Score=47.45 Aligned_cols=135 Identities=15% Similarity=0.210 Sum_probs=82.0
Q ss_pred hhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHH
Q 024689 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (264)
Q Consensus 46 ~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~ 124 (264)
...++++|++.++++|-+..+.|+ .+.+.+..++. .+.++ -+.++++...|+..|-+.+.
T Consensus 58 ~~~l~~~a~~~~id~Vi~g~E~~l------------------~~glad~l~~~-Gi~v~Gps~~aa~le~dK~~~K~~l~ 118 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVIGPEEPL------------------FAGVADVLREE-GFPVFGASSKCARIEKSKVWARELMW 118 (486)
T ss_pred HHHHHHHHHHhCCCEEEECCchHH------------------HHHHHHHHHhC-CCCEECCcHHHHHHhcCHHHHHHHHH
Confidence 345778888888887776443332 22233333333 55554 55677788888887777777
Q ss_pred hccccCCCCcccCC-ceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCc---------c----C-
Q 024689 125 DMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------L----K- 189 (264)
Q Consensus 125 ~l~~~~~~~~i~vP-~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~g---------L----~- 189 (264)
+. .|.+| ++..++ +.++..+.+. ..+|+|+||.-..| |..+.++.+.+. + .
T Consensus 119 ~~-------gIpt~~~~~~~~-~~~ea~~~~~---~~~PvVVKP~~~ag---gkGV~iv~~~~e~~~~~~~ea~~~a~~~ 184 (486)
T PRK05784 119 KY-------SIPGRLRYKVFY-DVEEAAKFIE---YGGSVAIKPARQAG---GKGVKVIADLQAYLSQEKREALTKSVND 184 (486)
T ss_pred Hc-------CcCCCccceEeC-CHHHHHHHHh---hcCCEEEeeCCCCC---CCCEEEECChhHhcchhHHHHHHHHHHH
Confidence 64 35565 676664 3222222232 23799999966544 667889987541 1 1
Q ss_pred ---------CCCCceeEEEeeeccceEEEEEEECc
Q 024689 190 ---------KLEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 190 ---------~L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.-..++|+|||+. |.=|=|.++.|
T Consensus 185 ~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 185 IKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred HHHhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 1135899999998 44455555543
No 66
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.59 Score=45.66 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=93.1
Q ss_pred HHHhcCcEEEEecCCCCCCC-CCCceEEEeccCchH------------------HHHHHHHHHHhCCCeEEeCchhHHhh
Q 024689 52 LARNKGILFVAIDQNRPLSD-QGPFDIVLHKLTGKE------------------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (264)
Q Consensus 52 ~~~~~gi~fv~ID~~~pl~~-QgpfDvILHKltd~~------------------~~~~l~~y~~~hP~v~VIDP~~ai~~ 112 (264)
.++..|+.++.+|++.+=.. |--=++|....+|.+ |-...-++..++ +.|-=++++++.
T Consensus 19 aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~l~~ 96 (375)
T COG0026 19 AAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDALRI 96 (375)
T ss_pred HHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHHHHH
Confidence 44667999999998765332 333345555544431 112222344444 566668999999
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC--
Q 024689 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-- 190 (264)
Q Consensus 113 L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-- 190 (264)
..||...=+.|.++ .+.+|.|.+++ +.+++.+.+..- .||.|.|... |.=+-+.=.+|.+.+++..
T Consensus 97 ~qdR~~eK~~l~~~-------Gi~va~~~~v~-~~~el~~~~~~~--g~p~VlKtr~--gGYDGkGQ~~i~~~~~~~~~~ 164 (375)
T COG0026 97 AQDRLVEKQFLDKA-------GLPVAPFQVVD-SAEELDAAAADL--GFPAVLKTRR--GGYDGKGQWRIRSDADLELRA 164 (375)
T ss_pred HhhHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHHHHHc--CCceEEEecc--ccccCCCeEEeeCcccchhhH
Confidence 99999888888765 46789999996 334555555544 4999999865 3445667788887777653
Q ss_pred -----CCCceeEEEeeeccce
Q 024689 191 -----LEPPLVLQEFVNHGGV 206 (264)
Q Consensus 191 -----L~~P~VlQEFINHggv 206 (264)
...| |+-+||+=..-
T Consensus 165 ~~~~~~~~~-vlE~fV~F~~E 184 (375)
T COG0026 165 AGLAEGGVP-VLEEFVPFERE 184 (375)
T ss_pred hhhhccCce-eEEeecccceE
Confidence 1335 99999987744
No 67
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=91.97 E-value=0.72 Score=45.45 Aligned_cols=117 Identities=15% Similarity=0.293 Sum_probs=71.5
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE
Q 024689 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (264)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal 181 (264)
+|.=++++|+.--||....+.+++++ +.+|..+.-. .++..+.. ..+.||+|+||-..-|+.. -.+
T Consensus 103 vvgs~~eaI~iaeDr~~fke~m~eig-------i~~P~~~~~~--~~e~~~~~--~~ig~PvIVrP~~~lGG~G---~~i 168 (400)
T COG0458 103 VVGSDPEAIEIAEDKKLFKEAMREIG-------IPVPSRIAHS--VEEADEIA--DEIGYPVIVKPSFGLGGSG---GGI 168 (400)
T ss_pred EEecCHHHhhhhhhHHHHHHHHHHcC-------CCCCcccccc--HHHHhhhH--hhcCCCEEEecCcCCCCCc---eeE
Confidence 46788999999999999999999874 5567332211 11111222 3466999999998887644 468
Q ss_pred EeccCccCC--------C-CCceeEEEeeeccceEEEEEEECce-EEEEEecCCCCCCcccc
Q 024689 182 AYDQYSLKK--------L-EPPLVLQEFVNHGGVLFKVYIVGEA-IKVVRRFSLPDVTKQDL 233 (264)
Q Consensus 182 vf~~~gL~~--------L-~~P~VlQEFINHggvLfKVYVIGd~-v~vv~R~SLpN~~~~~~ 233 (264)
++|++.|.. . -.+|+++|+|- |...|..=|+-|. ..|..-=++-|+.+...
T Consensus 169 ~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc~men~dp~gv 229 (400)
T COG0458 169 AYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVCNMENLDPMGV 229 (400)
T ss_pred EeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEEeCCccccccc
Confidence 889776642 2 13677777765 4455555444331 22222334555544443
No 68
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=91.95 E-value=0.22 Score=42.07 Aligned_cols=90 Identities=18% Similarity=0.316 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-C
Q 024689 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-E 192 (264)
Q Consensus 114 ~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L-~ 192 (264)
.|...+++.|.++ .|.+|..+.... .....+|+|+||.-.+|+ ..+.++-+++.+... .
T Consensus 2 ~dK~~~~~~L~~~-------gi~~P~~~~~~~----------~~~~~~~~viKp~~G~Gg---~~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 2 SDKLKTYKFLKEL-------GIPVPTTLRDSE----------PEPIDGPWVIKPRDGAGG---EGIRIVDSEDELEEFLN 61 (161)
T ss_dssp TSHHHHHHHHTTT--------S--------EE----------SS--SSSEEEEESS----------B--SS--TTE----
T ss_pred CCHHHHHHHHHcc-------CCCCCCcccccc----------ccccCCcEEEEeCCCCCC---CCeEEECCchhhccccc
Confidence 3667778887764 356783332221 123489999999998885 556677777666532 2
Q ss_pred CceeEEEeeeccceEEEEEEECce----EEEEEecCC
Q 024689 193 PPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSL 225 (264)
Q Consensus 193 ~P~VlQEFINHggvLfKVYVIGd~----v~vv~R~SL 225 (264)
.-.++||||. |.=|=+.++.+. +..+.|--+
T Consensus 62 ~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i 96 (161)
T PF02655_consen 62 KLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLI 96 (161)
T ss_dssp ---EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEE
T ss_pred cceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhh
Confidence 3349999997 555555555532 333455444
No 69
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=91.75 E-value=0.5 Score=45.73 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=77.9
Q ss_pred hHHhHHHhcCcEEEEecCCCCC---CCCCCce-EEEec-c---CchHHHHHHH------------------HHHHhCCCe
Q 024689 48 KLEGLARNKGILFVAIDQNRPL---SDQGPFD-IVLHK-L---TGKEWRQILE------------------EYRQTHPEV 101 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl---~~QgpfD-vILHK-l---td~~~~~~l~------------------~y~~~hP~v 101 (264)
.++.-|++.|+..+-+...... ....-.| .+.+. . ++......+. ++..+.. +
T Consensus 31 ~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~~~iiIp~gs~v~y~~~d~l~~~~-~ 109 (358)
T PRK13278 31 QILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREMNAILIPHGSFVAYLGLENVEKFK-V 109 (358)
T ss_pred HHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhcCcEEEeCCCcceeecHHHHHHCC-C
Confidence 4667778888888877776542 1112224 33333 3 2222221211 1222221 3
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE
Q 024689 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (264)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal 181 (264)
.+.=..++++...||..+-+.+++. .|.+|+++ . +. + .+.||+|+||..+. .+..-.+
T Consensus 110 p~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~----~-----~i~~PvIVKp~~g~---ggkGv~i 167 (358)
T PRK13278 110 PMFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP----E-----DIDRPVIVKLPGAK---GGRGYFI 167 (358)
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH----H-----HcCCCEEEEeCCCC---CCCCeEE
Confidence 3434566677778888887777764 46678863 2 11 1 25699999996544 4677778
Q ss_pred EeccCccC----CC--------CCceeEEEeeecc
Q 024689 182 AYDQYSLK----KL--------EPPLVLQEFVNHG 204 (264)
Q Consensus 182 vf~~~gL~----~L--------~~P~VlQEFINHg 204 (264)
+.+++.+. .+ ...+++||||..-
T Consensus 168 ~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~ 202 (358)
T PRK13278 168 AKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGV 202 (358)
T ss_pred eCCHHHHHHHHHHHHhccccCCCCeEEEEecCCCc
Confidence 88866553 11 4689999999744
No 70
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=90.61 E-value=2.1 Score=41.68 Aligned_cols=153 Identities=17% Similarity=0.238 Sum_probs=95.0
Q ss_pred CcEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCch----------HH-HHHHHHHHH
Q 024689 28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK----------EW-RQILEEYRQ 96 (264)
Q Consensus 28 ~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~----------~~-~~~l~~y~~ 96 (264)
+.++||. +.+.+...|.+.|+....++.=.|..-++..+.++--.+.. +| .+.++++..
T Consensus 13 kiLviGv----------ntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~ 82 (389)
T COG2232 13 KILVIGV----------NTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAE 82 (389)
T ss_pred eEEEEee----------cchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhh
Confidence 4667774 56678888999999999888877766667777777655543 34 344444433
Q ss_pred hCC--------------------CeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHh
Q 024689 97 THP--------------------EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK 156 (264)
Q Consensus 97 ~hP--------------------~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~ 156 (264)
..= ++.=.+|-..+..+-||...+..+..+... .|..-. ++.+.
T Consensus 83 dvD~~ii~~sg~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp-------~p~~~~--------~e~~~- 146 (389)
T COG2232 83 DVDAPIIPFSGFEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMP-------EPSEKK--------IEPLE- 146 (389)
T ss_pred hcceeeeeccccccccccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCC-------CChhhh--------hhhhh-
Confidence 320 112225555777777888888877765432 122111 12222
Q ss_pred cCCccceEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEeeeccceEEEEEEECc
Q 024689 157 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 157 agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
--..|+|.||+...|.. .=.+-|+++.- .+++++||||- |+=+-|-+|++
T Consensus 147 -~gekt~IlKPv~GaGG~---~el~~~~Ee~~---~~~~i~Qefi~--G~p~Svs~is~ 196 (389)
T COG2232 147 -EGEKTLILKPVSGAGGL---VELVKFDEEDP---PPGFIFQEFIE--GRPVSVSFISN 196 (389)
T ss_pred -hcceeeEEeeccCCCce---eeecccccccC---CcceehhhhcC--CceeEEEEEec
Confidence 23678999999998864 22222333332 37899999995 55666777776
No 71
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=89.43 E-value=0.79 Score=44.71 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=41.8
Q ss_pred cccCCceEEEccCCCChhHHHHhcCCccceEeeeccccC--CCCceeEEEEeccCccC----CCC----------CceeE
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG--SAKSHELSLAYDQYSLK----KLE----------PPLVL 197 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~G--s~~SH~Malvf~~~gL~----~L~----------~P~Vl 197 (264)
.|.+|+.+. ++ ..+.+|+|+||..|.| +..-+ ++.+.+.|. .+. ..+++
T Consensus 138 GI~~Pk~~~---~p---------~eId~PVIVKp~~asG~~srG~f---~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iI 202 (366)
T PRK13277 138 GIPYPKLFK---DP---------EEIDRPVIVKLPEAKRRLERGFF---TASSYEDFYEKSEELIKAGVIDREDLKNARI 202 (366)
T ss_pred CCCCceeec---Cc---------cccCccEEEEECCCCCccccCeE---eeCCHHHHHHHHHhhhhcCccccccccccee
Confidence 577888865 11 3578999999999999 65443 666766553 111 35689
Q ss_pred EEeeeccceEEEEEEE
Q 024689 198 QEFVNHGGVLFKVYIV 213 (264)
Q Consensus 198 QEFINHggvLfKVYVI 213 (264)
||||.---.=+=+|+-
T Consensus 203 QEyI~G~ey~~d~F~s 218 (366)
T PRK13277 203 EEYVIGAHFNFNYFYS 218 (366)
T ss_pred EeccCCCEEEEEEEEe
Confidence 9999733222334443
No 72
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=89.06 E-value=0.89 Score=45.39 Aligned_cols=124 Identities=17% Similarity=0.272 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCCeEEeCchh-HHhhhcCHHHHHHHHHhccccCCCCcccCCceE-EEccCCCChhHHHHhcCCccceEee
Q 024689 89 QILEEYRQTHPEVTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAK 166 (264)
Q Consensus 89 ~~l~~y~~~hP~v~VIDP~~-ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v-~i~~~~~~~~~~l~~agL~fPlI~K 166 (264)
..+.+-..++- +.++=|.. +++.+-|..+|-+.+.+.. |.+|+.. -.-.+.++..+..++.| ||+|+|
T Consensus 89 ~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aG-------VP~vpgs~~~~~~~ee~~~~a~~iG--yPVivK 158 (449)
T COG0439 89 AAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAG-------VPVVPGSDGAVADNEEALAIAEEIG--YPVIVK 158 (449)
T ss_pred HHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcC-------CCcCCCCCCCcCCHHHHHHHHHHcC--CCEEEE
Confidence 34555555554 88888765 5555558888888877642 3333332 11012233444555666 999999
Q ss_pred eccccCCCCceeEEEEeccCccCC------------CCCc-eeEEEeeeccceEEEEEEECceE----EEEEec-CCC
Q 024689 167 PLVADGSAKSHELSLAYDQYSLKK------------LEPP-LVLQEFVNHGGVLFKVYIVGEAI----KVVRRF-SLP 226 (264)
Q Consensus 167 PlvA~Gs~~SH~Malvf~~~gL~~------------L~~P-~VlQEFINHggvLfKVYVIGd~v----~vv~R~-SLp 226 (264)
|...-| +-.|-+|.+++.|.+ +.-| +.+++||+.- .=.=+-|+||.. +...|- |+.
T Consensus 159 a~~GgG---g~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~-rhievqv~gD~~g~~i~l~eRdcsiq 232 (449)
T COG0439 159 AAAGGG---GRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP-RHIEVQVLGDGHGNVIHLGERDCSIQ 232 (449)
T ss_pred ECCCCC---cccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC-ceEEEEEEEcCcccEEEEEeccCCCc
Confidence 988766 568999999988852 2345 9999999865 223345677654 455665 553
No 73
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=88.59 E-value=5.5 Score=38.09 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=57.7
Q ss_pred hhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCcc-ceEeeeccccCCCCceeEEEEeccCc--
Q 024689 111 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYS-- 187 (264)
Q Consensus 111 ~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~f-PlI~KPlvA~Gs~~SH~Malvf~~~g-- 187 (264)
..+-|.......+++ ..+.+|+.+++.....+ .+.+.+.--.+ |+|+||+..++-.. +.++-+...
T Consensus 33 ~~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~-~~~l~~~~~~~~~VVVKPl~Gs~GrG---I~~i~~~~~~~ 101 (317)
T TIGR02291 33 PLVDDKLKTKIIAQA-------AGITVPELYGVIHNQAE-VKTIHNIVKDHPDFVIKPAQGSGGKG---ILVITSRKDGR 101 (317)
T ss_pred cccccHHHHHHHHHH-------cCCCCCCEEEecCchhh-HHHHHHHHccCCCEEEEECCCCCccC---eEEEEeccccc
Confidence 334445555455443 25889998877533222 22232221245 69999999776543 455543322
Q ss_pred ------------------------cCCCCCc--eeEEEee--eccc---------eEEEEEEECceEEE-EEecCC
Q 024689 188 ------------------------LKKLEPP--LVLQEFV--NHGG---------VLFKVYIVGEAIKV-VRRFSL 225 (264)
Q Consensus 188 ------------------------L~~L~~P--~VlQEFI--NHgg---------vLfKVYVIGd~v~v-v~R~SL 225 (264)
|-.+..+ ..+|||+ .|.. -=..|+|+|+.+.. ..|.+.
T Consensus 102 ~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R~~~ 177 (317)
T TIGR02291 102 YRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMRLPT 177 (317)
T ss_pred cccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEEccC
Confidence 1122222 5677887 4421 36899999998875 445443
No 74
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=85.64 E-value=0.94 Score=43.63 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=50.8
Q ss_pred hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCC-CCceeEE-EEec
Q 024689 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS-AKSHELS-LAYD 184 (264)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs-~~SH~Ma-lvf~ 184 (264)
-...+.|.+.-.+|+.-++++ +..|+-+.+++.. +.+ -..|+||+|.||=..-|. ..+..=+ .+-+
T Consensus 106 w~~l~wlceKPllY~ra~elg-------l~~P~Ty~v~S~~----d~~-~~el~FPvILKP~mgg~~~~~araKa~~a~d 173 (415)
T COG3919 106 WALLRWLCEKPLLYNRAEELG-------LPYPKTYLVNSEI----DTL-VDELTFPVILKPGMGGSVHFEARAKAFTAAD 173 (415)
T ss_pred HHHHHHHhhCcHHHHHHHHhC-------CCCcceEEecchh----hhh-hhheeeeEEecCCCCCcceeehhhheeeccC
Confidence 345556666666666666654 5579999997322 112 256899999999776442 1111111 1122
Q ss_pred cCccC--------CC-CCceeEEEeeeccce
Q 024689 185 QYSLK--------KL-EPPLVLQEFVNHGGV 206 (264)
Q Consensus 185 ~~gL~--------~L-~~P~VlQEFINHggv 206 (264)
.+.++ .. .--+|+||||.-||-
T Consensus 174 ~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE 204 (415)
T COG3919 174 NEEMKLALHRAYEEIGPDNVVVQEFIPGGGE 204 (415)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCc
Confidence 22222 11 225999999999864
No 75
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=85.00 E-value=0.46 Score=41.29 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=42.6
Q ss_pred cccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----C-CCceeEEEeeeccce
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L-EPPLVLQEFVNHGGV 206 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~----L-~~P~VlQEFINHggv 206 (264)
.+.+|+|..+.+ .+++.+.+ ..+.||+|.|+... .-+-+.-.+|.+++.+.. + ..||++.+||+...-
T Consensus 5 gip~~~~~~i~~-~~~l~~a~--~~iG~P~vlK~~~~--GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~E 77 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAA--ESIGFPAVLKTRRG--GYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDRE 77 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHH--HHHTSSEEEEESSS--SCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEE
T ss_pred CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEccCc--CcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEE
Confidence 477999999963 22333333 35799999997543 234555678899888864 3 569999999998743
No 76
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=84.83 E-value=0.8 Score=40.00 Aligned_cols=79 Identities=30% Similarity=0.423 Sum_probs=39.1
Q ss_pred CCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC--------CCCCceeEEEeeecc--ce
Q 024689 137 VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK--------KLEPPLVLQEFVNHG--GV 206 (264)
Q Consensus 137 vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~--------~L~~P~VlQEFINHg--gv 206 (264)
+|..++-. +.+.+.+-+++.|= +|+||+.+.|...-+.+.- +...++ .-..|+++|+|+.-- |
T Consensus 12 ~P~T~vs~-~~~~i~~f~~~~~~---~VlKPl~g~gG~gV~~i~~--~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~G- 84 (173)
T PF02955_consen 12 IPPTLVSR-DKEEIRAFIEEHGD---IVLKPLDGMGGRGVFRISR--DDPNLNSILETLTKNGERPVMVQPFLPEIKEG- 84 (173)
T ss_dssp S--EEEES--HHHHHHHHHHHSS---EEEEESS--TTTT-EEE-T--T-TTHHHHHHHHTTTTTS-EEEEE--GGGGG--
T ss_pred CcCEEEEC-CHHHHHHHHHHCCC---EEEEECCCCCCcCEEEEcC--CCCCHHHHHHHHHhcCCccEEEEeccccccCC-
Confidence 47766653 44445555555544 9999999999877666543 222222 224589999999843 3
Q ss_pred EEEEE-EECceEEEEEe
Q 024689 207 LFKVY-IVGEAIKVVRR 222 (264)
Q Consensus 207 LfKVY-VIGd~v~vv~R 222 (264)
=.-+. +=|..++.+.|
T Consensus 85 DkRii~~nG~~~~av~R 101 (173)
T PF02955_consen 85 DKRIILFNGEPSHAVRR 101 (173)
T ss_dssp EEEEEEETTEE-SEEEE
T ss_pred CEEEEEECCEEhHHeec
Confidence 23444 44566666555
No 77
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=81.02 E-value=3.2 Score=37.07 Aligned_cols=88 Identities=11% Similarity=0.310 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC--
Q 024689 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (264)
Q Consensus 115 nR~~ml~~l~~l~~~~~~~~i~vP~~v~i-~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L-- 191 (264)
||....+.+.+++ +.+|+.... -.+.++..+.. .++.||+++||...-|. ..|.++++++.|...
T Consensus 1 Dk~~~~~~~~~~g-------vp~~pg~~~~~~~~eea~~~a--~~iGyPVliKas~ggGG---~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKLG-------VPVPPGSTVPISSVEEALEFA--EEIGYPVLIKASAGGGG---RGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHTT--------BBSSBESSSBSSHHHHHHHH--HHH-SSEEEEETTSSTT---TSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHCC-------CCcCCCCCCCCCCHHHHHHHH--HhcCCceEEeecccccc---cccccccchhhhhhhhh
Confidence 5666677777654 334444432 11212222222 34789999999887664 689999999888522
Q ss_pred -----------CCceeEEEeeeccceEEEEEEECc
Q 024689 192 -----------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 192 -----------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..|+++.+|+.. ..=+-|=|++|
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~~-~reiEvqvi~D 102 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIEG-AREIEVQVIRD 102 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--SS-EEEEEEEEEEE
T ss_pred hccccCccccccceEEEeeehhh-hhhhhhhhhhc
Confidence 579999999984 33334444443
No 78
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=79.67 E-value=12 Score=36.46 Aligned_cols=141 Identities=19% Similarity=0.282 Sum_probs=84.1
Q ss_pred HHhHHHhcCcEEEEecCCCCCCC-C-CCceEEEeccCchHHH--------------------HHHHHHHHhCCCeEEeCc
Q 024689 49 LEGLARNKGILFVAIDQNRPLSD-Q-GPFDIVLHKLTGKEWR--------------------QILEEYRQTHPEVTVLDP 106 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl~~-Q-gpfDvILHKltd~~~~--------------------~~l~~y~~~hP~v~VIDP 106 (264)
+.--|...|++.+.+|-=..-.. | -....++.-+..+..+ +.|.++.+. ...||=.
T Consensus 27 vaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~--G~~VVP~ 104 (394)
T COG0027 27 VAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAIATDALVELEEE--GYTVVPN 104 (394)
T ss_pred HHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhC--CceEccc
Confidence 33445667999999996332211 2 1233344433333222 234444433 3447777
Q ss_pred hhHHhhhcCHHHHHHHHHh-ccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEecc
Q 024689 107 PYAIQHLHNRQSMLQCVAD-MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (264)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~-l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~ 185 (264)
-.+.+.-+||..+-+...+ |. +.|-++...++ -+++.+.. ..+-||+++||+.. +.-|.=++|-++
T Consensus 105 ArAt~ltMnRegiRrlAAeeLg-------lpTs~Y~fa~s-~~e~~~a~--~~iGfPcvvKPvMS---SSGkGqsvv~~~ 171 (394)
T COG0027 105 ARATKLTMNREGIRRLAAEELG-------LPTSKYRFADS-LEELRAAV--EKIGFPCVVKPVMS---SSGKGQSVVRSP 171 (394)
T ss_pred hHHHHhhhcHHHHHHHHHHHhC-------CCCcccccccc-HHHHHHHH--HHcCCCeecccccc---cCCCCceeecCH
Confidence 7788889999876665433 43 33444554431 12222222 46899999999984 456777889888
Q ss_pred CccCC-----------CCCceeEEEeeecc
Q 024689 186 YSLKK-----------LEPPLVLQEFVNHG 204 (264)
Q Consensus 186 ~gL~~-----------L~~P~VlQEFINHg 204 (264)
+.+.. -..-+++-+||+-+
T Consensus 172 e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd 201 (394)
T COG0027 172 EDVEKAWEYAQQGGRGGSGRVIVEEFVKFD 201 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEecce
Confidence 87752 24578999999876
No 79
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=76.67 E-value=8.5 Score=36.43 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=30.9
Q ss_pred eEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEeeecc--ceEEEEEEECceEEE
Q 024689 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG--GVLFKVYIVGEAIKV 219 (264)
Q Consensus 163 lI~KPlvA~Gs~~SH~Malvf~~~gL~~L~~P~VlQEFINHg--gvLfKVYVIGd~v~v 219 (264)
.|.||.-+||.. .+.|. .+.+++ +++||||.-- +|. ..+|+++.+
T Consensus 141 ~ViKp~dgCgge-----~i~~~-~~~pd~---~i~qEfIeG~~lSVS---L~~GEkv~p 187 (307)
T COG1821 141 YVIKPADGCGGE-----GILFG-RDFPDI---EIAQEFIEGEHLSVS---LSVGEKVLP 187 (307)
T ss_pred EEecccccCCcc-----eeecc-CCCcch---hhHHHhcCCcceEEE---EecCCcccc
Confidence 699999999973 22222 223333 9999999744 555 678988876
No 80
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=75.80 E-value=2.1 Score=41.20 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=46.7
Q ss_pred cccCCceEEEccCCCChhHHHHhcCCc-cceEeeeccccC-CCCceeEEEEeccCccCC-----CC--------------
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADG-SAKSHELSLAYDQYSLKK-----LE-------------- 192 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL~-fPlI~KPlvA~G-s~~SH~Malvf~~~gL~~-----L~-------------- 192 (264)
.|.+|++.++.+ .++..+.. ..+. ||+++||.+-.| ..++-...++.+.+.+.. +.
T Consensus 16 GIpvp~~~~~~~-~~ea~~~~--~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~ 92 (386)
T TIGR01016 16 GIPVPRGYVATS-VEEAEEIA--AKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQP 92 (386)
T ss_pred CCCCCCceeeCC-HHHHHHHH--HHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCE
Confidence 578899888742 22222222 2356 999999985444 334457777766544421 11
Q ss_pred -CceeEEEeeeccceEEEEEEECc
Q 024689 193 -PPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 193 -~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+++|+|++|+--+| |-+++|
T Consensus 93 ~~~vlVEe~v~~g~E~~-v~i~~d 115 (386)
T TIGR01016 93 VNKILIEEATDIDKEYY-LSIVID 115 (386)
T ss_pred eeEEEEEECccCCceEE-EEEEEc
Confidence 1489999998864443 444445
No 81
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=74.02 E-value=75 Score=30.26 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=97.7
Q ss_pred HHhHHHhcCcEEEEecCCCCCC---CC-------CCceEEEeccCchH-HHHHHHHHHHhCCCeEEeCchhHHhhhcCHH
Q 024689 49 LEGLARNKGILFVAIDQNRPLS---DQ-------GPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl~---~Q-------gpfDvILHKltd~~-~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~ 117 (264)
+..+-+..|.+..++|.+.... .+ ..+|+++-.+.+.. -...+|.|.+.+-==.|.=|+.+-.--+|..
T Consensus 26 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~ 105 (317)
T COG1181 26 VLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKI 105 (317)
T ss_pred HHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHH
Confidence 4444445788888888887432 12 46777655555431 0233555555542223444555555555554
Q ss_pred HHHHHHHhccccCCCCcccCCceEEEccCC-CChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC------
Q 024689 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------ 190 (264)
Q Consensus 118 ~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~-~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~------ 190 (264)
.+-...... .+.++.++.++.+. .+..-.-...|+.||+++||--. || |=.+..+.+...+..
T Consensus 106 ~~K~~~~~~-------g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~e~a~ 175 (317)
T COG1181 106 VTKRLFKAE-------GLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSALELAF 175 (317)
T ss_pred HHHHHHHHC-------CCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHHHHHH
Confidence 443333322 46677788876442 22222234579999999999764 33 667888888777763
Q ss_pred -CCCceeEEEeeeccceEEEEEEECceE
Q 024689 191 -LEPPLVLQEFVNHGGVLFKVYIVGEAI 217 (264)
Q Consensus 191 -L~~P~VlQEFINHggvLfKVYVIGd~v 217 (264)
-+...++++|++ |.=..|=++|+..
T Consensus 176 ~~d~~vl~e~~~~--~rei~v~vl~~~~ 201 (317)
T COG1181 176 KYDRDVLREQGIT--GREIEVGVLGNDY 201 (317)
T ss_pred HhCCceeeccCCC--cceEEEEecCCcc
Confidence 256899999999 8888999999966
No 82
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=68.43 E-value=6.1 Score=38.03 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=43.3
Q ss_pred cccCCceEEEccCCCChhHHHHhcCC-ccceEeeeccc-cCCCCceeEEEEeccCccCC---------C--------CC-
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKK---------L--------EP- 193 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL-~fPlI~KPlvA-~Gs~~SH~Malvf~~~gL~~---------L--------~~- 193 (264)
.|.+|++.++.+ .++..+.. ..+ .||+++||..- -|..+++...+..+++.+.. + ..
T Consensus 16 gIpvp~~~~~~~-~~ea~~~a--~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~ 92 (388)
T PRK00696 16 GVPVPRGIVATT-PEEAVEAA--EELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQP 92 (388)
T ss_pred CCCCCCCeeeCC-HHHHHHHH--HHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCE
Confidence 578899888752 22222222 236 89999999753 34566777777765544421 1 01
Q ss_pred --ceeEEEeeeccc
Q 024689 194 --PLVLQEFVNHGG 205 (264)
Q Consensus 194 --P~VlQEFINHgg 205 (264)
.+++|+|+.|+-
T Consensus 93 ~~gvlVe~~~~~~~ 106 (388)
T PRK00696 93 VNKVLVEEGADIAK 106 (388)
T ss_pred EeEEEEEeccCCCc
Confidence 389999999863
No 83
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=53.27 E-value=53 Score=30.54 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=50.7
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCC--hhHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 024689 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS--IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (264)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~--~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv 182 (264)
+|......+-|...+.+.+.+..++....-+.+++.+.......+ -...+.......++++||....|. +...++
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G---~Gi~~i 92 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGG---KGILVI 92 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCc---cCEEEE
Confidence 455677777788888887776533222111223333322111111 111222333458999999765554 444444
Q ss_pred eccCc---------c----CCCC-CceeEEEeeeccce
Q 024689 183 YDQYS---------L----KKLE-PPLVLQEFVNHGGV 206 (264)
Q Consensus 183 f~~~g---------L----~~L~-~P~VlQEFINHggv 206 (264)
...+| + ..+. .-.++||+|.=...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~ 130 (285)
T PF14397_consen 93 DRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPE 130 (285)
T ss_pred EeecCcccccchhHHHHHHHhcCCccEEEEecccCCHH
Confidence 44332 1 1111 27999999865433
No 84
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=47.42 E-value=69 Score=31.08 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=54.0
Q ss_pred HHHHHhhHhhh---ccCCccccCCCcEEEEEEechhhhhccchhhHH-hHHHhcCcEEEEecCCCC----CCCCCCceEE
Q 024689 7 EIEEQTREEEL---LSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLE-GLARNKGILFVAIDQNRP----LSDQGPFDIV 78 (264)
Q Consensus 7 ~~~~~~~~~~~---~~~~~~~~~~~~~~VGy~l~~kK~~~f~~~~l~-~~~~~~gi~fv~ID~~~p----l~~QgpfDvI 78 (264)
++-.|.+-+|+ .|.|..+..+. -++-++=+..-++.+.. +.+ +-.+..|=.++.+|=+.. +..+-.|.
T Consensus 92 ~~~~~~E~aela~~lS~p~e~e~s~-pii~fed~~~~~~~m~n-~~~~n~~~~s~qk~~~~dGs~g~kYyIPpkSsF~-- 167 (366)
T KOG2356|consen 92 NNLKSREAAELALNLSIPSESESSE-PIIEFEDSESLSNLMSN-GMINNWVRCSGQKPGIIDGSDGTKYYIPPKSSFH-- 167 (366)
T ss_pred hhhhHHHhhHHHHhcCCcccccccc-cceeehhhcchHHHHHh-HhhhhhhcccccceeEeeCCCcceEEeCCcccee--
Confidence 44556666776 77886664432 23333333333333321 212 223445666777776443 22233333
Q ss_pred EeccCchHHHHHHHHHHHhCCCeEEeCchhH
Q 024689 79 LHKLTGKEWRQILEEYRQTHPEVTVLDPPYA 109 (264)
Q Consensus 79 LHKltd~~~~~~l~~y~~~hP~v~VIDP~~a 109 (264)
+.|..-.+++-++.+..|+++|||||=-
T Consensus 168 ---~gDv~~~~qll~~H~llpdlIIiDPPW~ 195 (366)
T KOG2356|consen 168 ---VGDVKDIEQLLRAHDLLPDLIIIDPPWF 195 (366)
T ss_pred ---cccHHHHHHHhHHHhhcCCeEEeCCCCC
Confidence 2355667777799999999999999943
No 85
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=46.20 E-value=5.7 Score=36.30 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=30.2
Q ss_pred cCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----CCCceeEEEeeec-----c-c
Q 024689 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----LEPPLVLQEFVNH-----G-G 205 (264)
Q Consensus 136 ~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~----L~~P~VlQEFINH-----g-g 205 (264)
..|+...+..+..++.... ..+-.--||+||-..++ ...+.|+-+.+.+.+ ...+.|+|+||.- | -
T Consensus 42 ~~p~t~~l~~~~~~~~~~~-~~~~~~~wI~KP~~~~r---G~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grK 117 (292)
T PF03133_consen 42 FYPETFILPQDYKEFLKYF-EKNPKNLWIVKPSNGSR---GRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRK 117 (292)
T ss_dssp -------HHHHHHHHHHHH-HTTS---EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-
T ss_pred CCcceEecHHHHHHHHHHH-hcCCCCEEEEeccccCC---CCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeee
Confidence 4566666643322222222 22223569999987544 456677766666654 4679999999974 3 3
Q ss_pred eEEEEEEE
Q 024689 206 VLFKVYIV 213 (264)
Q Consensus 206 vLfKVYVI 213 (264)
.=+.+||+
T Consensus 118 FDlR~yvl 125 (292)
T PF03133_consen 118 FDLRVYVL 125 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 34556665
No 86
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=43.26 E-value=37 Score=33.39 Aligned_cols=63 Identities=21% Similarity=0.432 Sum_probs=37.3
Q ss_pred chhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCC--CceEEEeccCch---HHHHHHHHHHHhCCCeEE
Q 024689 37 TSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG--PFDIVLHKLTGK---EWRQILEEYRQTHPEVTV 103 (264)
Q Consensus 37 ~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~Qg--pfDvILHKltd~---~~~~~l~~y~~~hP~v~V 103 (264)
+-...+.++...+..+.++.||+++++|++..+.+-+ ..+ ..... -.-+.+++-.++||+|++
T Consensus 163 ~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~----~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 163 SNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLP----EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp TSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-----GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCch----HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 3333566666667778889999999999999886643 112 11111 112456677889999875
No 87
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=38.99 E-value=1.2e+02 Score=24.11 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=47.7
Q ss_pred ccchhhHHhHHHhcCcEEE--EecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHh-CCCeEEeCchhHHhhhcCHHHH
Q 024689 43 SFLQPKLEGLARNKGILFV--AIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQSM 119 (264)
Q Consensus 43 ~f~~~~l~~~~~~~gi~fv--~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~-hP~v~VIDP~~ai~~L~nR~~m 119 (264)
++.-.++.++|+++|+++- ......--+....+|+||-=-.-.-....+++.... +-.|.+|||-+-..-.+|=...
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~v 93 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDGA 93 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHHH
Confidence 4455567788999999753 222221111234789998533322334556655544 5689999998877667776555
Q ss_pred HH
Q 024689 120 LQ 121 (264)
Q Consensus 120 l~ 121 (264)
++
T Consensus 94 l~ 95 (99)
T cd05565 94 LK 95 (99)
T ss_pred HH
Confidence 54
No 88
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=37.03 E-value=68 Score=28.36 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=39.3
Q ss_pred CcEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCC--CCCCceEEEec-cCchHHHHHHHHHH-HhCCCeEE
Q 024689 28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS--DQGPFDIVLHK-LTGKEWRQILEEYR-QTHPEVTV 103 (264)
Q Consensus 28 ~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~--~QgpfDvILHK-ltd~~~~~~l~~y~-~~hP~v~V 103 (264)
+...|-|+-.|-....+ .+.+..+....+.. +++-..... ...++.+.-=+ .....+.+.+.++. ...|+++|
T Consensus 40 ~~~~Vlyi~~Ed~~~~i-~~Rl~~i~~~~~~~--~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvv 116 (239)
T cd01125 40 EPGRVVYLSAEDPREEI-HRRLEAILQHLEPD--DAGDRLFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVV 116 (239)
T ss_pred CCceEEEEECCCCHHHH-HHHHHHHHhhcCCc--CcccceEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEE
Confidence 46678888877665543 34666666554421 000000000 01122211100 11233444444443 56899999
Q ss_pred eCchhHH
Q 024689 104 LDPPYAI 110 (264)
Q Consensus 104 IDP~~ai 110 (264)
|||+.++
T Consensus 117 iDpl~~~ 123 (239)
T cd01125 117 IDPLVSF 123 (239)
T ss_pred ECChHHh
Confidence 9999876
No 89
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=36.11 E-value=36 Score=28.47 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHh--CCCeEEeCchhHHhhh
Q 024689 86 EWRQILEEYRQT--HPEVTVLDPPYAIQHL 113 (264)
Q Consensus 86 ~~~~~l~~y~~~--hP~v~VIDP~~ai~~L 113 (264)
...+.+.++.++ .|+++||||+.++..-
T Consensus 127 ~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 127 EDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 345677888766 4899999999999885
No 90
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=35.69 E-value=91 Score=26.81 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=38.5
Q ss_pred EEEEechhhhh--ccchhhHHhHHHhcCcEEEEe-cCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchh
Q 024689 32 VGYALTSKKTK--SFLQPKLEGLARNKGILFVAI-DQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (264)
Q Consensus 32 VGy~l~~kK~~--~f~~~~l~~~~~~~gi~fv~I-D~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ 108 (264)
||+.++...-. .-.+.++...|++.|+++.-+ |-... ...+.+.+++.++++|+.+|+-|.+
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d---------------~~~q~~~i~~~i~~~~d~Iiv~~~~ 65 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQND---------------PEEQIEQIEQAISQGVDGIIVSPVD 65 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTTT---------------HHHHHHHHHHHHHTTESEEEEESSS
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCC---------------HHHHHHHHHHHHHhcCCEEEecCCC
Confidence 45555554433 223446778899999999886 43322 2345566667777777777666655
Q ss_pred H
Q 024689 109 A 109 (264)
Q Consensus 109 a 109 (264)
.
T Consensus 66 ~ 66 (257)
T PF13407_consen 66 P 66 (257)
T ss_dssp T
T ss_pred H
Confidence 4
No 91
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=34.42 E-value=58 Score=28.61 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.9
Q ss_pred EEEeccCch-----HHHHHHHHHHHhCCCeEEeCchh
Q 024689 77 IVLHKLTGK-----EWRQILEEYRQTHPEVTVLDPPY 108 (264)
Q Consensus 77 vILHKltd~-----~~~~~l~~y~~~hP~v~VIDP~~ 108 (264)
+|||-++|- .+..+|++...+..+++||+|..
T Consensus 5 ~vI~evYd~ena~e~FE~eLe~ALe~~~~~IVIEP~~ 41 (165)
T PF14972_consen 5 AVIREVYDGENAHEQFEAELERALEAKVSYIVIEPTR 41 (165)
T ss_pred EEEehHhcCcchHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 689999984 46788999999999999999974
No 92
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.00 E-value=1.5e+02 Score=23.62 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=38.4
Q ss_pred EEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCC----------CCCCC-CCceEEEeccCchHHHHHHHHHHHhC
Q 024689 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNR----------PLSDQ-GPFDIVLHKLTGKEWRQILEEYRQTH 98 (264)
Q Consensus 30 ~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~----------pl~~Q-gpfDvILHKltd~~~~~~l~~y~~~h 98 (264)
.+||---.+.|.-... +....++|++.++++++. .|.+. ++.|+++-=+.-..+-+.+++-.+..
T Consensus 4 AVvGaS~~~~~~g~~v----~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 4 AVVGASDNPGKFGYRV----LRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALG 79 (116)
T ss_dssp EEET--SSTTSHHHHH----HHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT
T ss_pred EEEcccCCCCChHHHH----HHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcC
Confidence 4566655445543333 233344899999999976 23322 56676666666555666666666665
Q ss_pred CCeEEeCch
Q 024689 99 PEVTVLDPP 107 (264)
Q Consensus 99 P~v~VIDP~ 107 (264)
...+++=|=
T Consensus 80 ~~~v~~~~g 88 (116)
T PF13380_consen 80 VKAVWLQPG 88 (116)
T ss_dssp -SEEEE-TT
T ss_pred CCEEEEEcc
Confidence 555555444
No 93
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=31.38 E-value=1.6e+02 Score=26.51 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=41.9
Q ss_pred EEEEechhh----hhccchhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCchHHHHHHHHHHHhC
Q 024689 32 VGYALTSKK----TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGKEWRQILEEYRQTH 98 (264)
Q Consensus 32 VGy~l~~kK----~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKltd~~~~~~l~~y~~~h 98 (264)
||+.++-.. ++...+.++...+++.|+++..++...+.+++ ..+|+|+= +...+.+.+.+..++|
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~--~g~~~~~~~~~vA~~~ 79 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFG--TSFGFMDAALKVAKEY 79 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEE--CchhhhHHHHHHHHHC
Confidence 566665333 33344456777878889998877765322211 23776665 5556666777777777
Q ss_pred CCeE
Q 024689 99 PEVT 102 (264)
Q Consensus 99 P~v~ 102 (264)
|++.
T Consensus 80 p~~~ 83 (258)
T cd06353 80 PDVK 83 (258)
T ss_pred CCCE
Confidence 7655
No 94
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=29.45 E-value=1.2e+02 Score=26.63 Aligned_cols=39 Identities=10% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHh-CCCeEEeCchhHHhhhcCHHHHHHHHH
Q 024689 86 EWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (264)
Q Consensus 86 ~~~~~l~~y~~~-hP~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (264)
...+.+.+.+++ .|+++|||++.+.....++..+.+.+.
T Consensus 107 ~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 107 KLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 344555566554 889999999998876677665555443
No 95
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=29.18 E-value=4.3e+02 Score=23.88 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=58.4
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCcc---
Q 024689 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL--- 188 (264)
Q Consensus 112 ~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL--- 188 (264)
.+.|+...-+-+++.. +....+|-..+.+ +. +.+.-..|.-++|.||--+||+ .-|+.+...+
T Consensus 17 ~~~DK~~VR~yv~~~~----g~~~l~pll~v~~-~~----~~i~~~~Lp~~fViK~nhgsg~-----~~i~~dk~~~d~~ 82 (239)
T PF14305_consen 17 KLADKYAVREYVEEKI----GEEYLPPLLGVYD-NP----DDIDFDSLPDKFVIKPNHGSGS-----NIIVRDKSKLDIE 82 (239)
T ss_pred ecchHHHHHHHHHHhC----CCceECceeecCC-Ch----hhhhhhcCCCCEEEEEecCCCc-----EEEEeCCcccCHH
Confidence 4445544444444321 1235556665553 22 2333456778999999988884 2333332222
Q ss_pred -----------------------CCCCCceeEEEeeeccc----eEEEEEEECceEEEEEecC
Q 024689 189 -----------------------KKLEPPLVLQEFVNHGG----VLFKVYIVGEAIKVVRRFS 224 (264)
Q Consensus 189 -----------------------~~L~~P~VlQEFINHgg----vLfKVYVIGd~v~vv~R~S 224 (264)
+.+++-+++-+|+...+ .=||+||...++.+...-+
T Consensus 83 ~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~ 145 (239)
T PF14305_consen 83 EAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDS 145 (239)
T ss_pred HHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEe
Confidence 23456789999998873 4699999999655544433
No 96
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.84 E-value=42 Score=33.76 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=30.7
Q ss_pred eccCccCCCCCceeEEEeeeccceEEEEEEECceEEEE
Q 024689 183 YDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVV 220 (264)
Q Consensus 183 f~~~gL~~L~~P~VlQEFINHggvLfKVYVIGd~v~vv 220 (264)
|.+.|+..+.|||++|.=|.-|+.|||.=--|+-....
T Consensus 257 y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLT 294 (545)
T KOG0555|consen 257 YFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLT 294 (545)
T ss_pred HHhcCceecCCCceEEEEecCcceEEeecccCchhhcc
Confidence 55677778899999999999999999986666554443
No 97
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=27.73 E-value=1.4e+02 Score=23.92 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=27.6
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCch-HHHHHHHHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK-EWRQILEEYRQ 96 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~-~~~~~l~~y~~ 96 (264)
.|++|.+..||++.-- . +++|.|++.||.=.+. ..++++++|..
T Consensus 15 aF~DYl~sqgI~~~i~-~----~~~~~~~lwl~de~~~~~a~~el~~Fl~ 59 (101)
T PF12122_consen 15 AFIDYLASQGIELQIE-P----EGQGQFALWLHDEEHLEQAEQELEEFLQ 59 (101)
T ss_dssp HHHHHHHHTT--EEEE------SSSE--EEEES-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEE-E----CCCCceEEEEeCHHHHHHHHHHHHHHHH
Confidence 5889999999876422 2 5677899999944443 45677888875
No 98
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=26.73 E-value=57 Score=27.73 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=13.1
Q ss_pred EEEeeecc-ceEEEEEEEC
Q 024689 197 LQEFVNHG-GVLFKVYIVG 214 (264)
Q Consensus 197 lQEFINHg-gvLfKVYVIG 214 (264)
-=.|+|++ ..+||||+=-
T Consensus 105 sv~F~~~~G~~~fKvflgR 123 (141)
T PF06228_consen 105 SVQFFDADGEAMFKVFLGR 123 (141)
T ss_dssp EEEEEETTSSEEEEEEE-B
T ss_pred EEEEECCCCCEEEEEEeec
Confidence 44677776 8999999853
No 99
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=26.19 E-value=1.1e+02 Score=27.19 Aligned_cols=28 Identities=4% Similarity=-0.113 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHh-CCCeEEeCchhHHhhh
Q 024689 86 EWRQILEEYRQT-HPEVTVLDPPYAIQHL 113 (264)
Q Consensus 86 ~~~~~l~~y~~~-hP~v~VIDP~~ai~~L 113 (264)
...+.++++... .|+++|||++..+...
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 345666666655 4899999999998765
No 100
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.83 E-value=28 Score=35.48 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=39.4
Q ss_pred ccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEee-------eccceE
Q 024689 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV-------NHGGVL 207 (264)
Q Consensus 135 i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L~~P~VlQEFI-------NHggvL 207 (264)
-+=|+.|.+..+-.++++.... .+=|+||||.-.+ .+-...++-+..-....+ -.++|||| ||=-..
T Consensus 203 ~fyp~sw~lPa~l~df~a~~~~--~KrtfivkpDsga---qg~giylisDir~~g~~Q-~~~vQeyV~~pLli~dkyKfd 276 (565)
T KOG2158|consen 203 MFYPTSWRLPAPLCDFPASTEI--MKRTFIVKPDSGA---QGSGIYLISDIREKGEYQ-NKKVQEYVTYPLLISDKYKFD 276 (565)
T ss_pred cCCCccccCchHHHHHHHHHHH--hcccEEECCCCCC---CCcceeeechhhhhhHHH-HHHHHHHhcccccccccceee
Confidence 3457777664332333433222 2339999997543 334556663322221222 26788887 555666
Q ss_pred EEEEEE
Q 024689 208 FKVYIV 213 (264)
Q Consensus 208 fKVYVI 213 (264)
+.||++
T Consensus 277 ~rvy~l 282 (565)
T KOG2158|consen 277 QRVYSL 282 (565)
T ss_pred eeeeee
Confidence 777776
No 101
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=24.37 E-value=2.9e+02 Score=24.79 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=47.6
Q ss_pred hhccCCccc----cCCCcEEEEEEechhhhhccc---hhhHHhHHHhcCcEEEEecCCCCCCC---------CCCceEEE
Q 024689 16 ELLSFPQTQ----QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVL 79 (264)
Q Consensus 16 ~~~~~~~~~----~~~~~~~VGy~l~~kK~~~f~---~~~l~~~~~~~gi~fv~ID~~~pl~~---------QgpfDvIL 79 (264)
|++--|+.. ...+..+||+.++.-. ..|. ..++...|+++|+.++-.+.....+. ++.+|.||
T Consensus 44 elgY~pn~~a~~l~~~~~~~Igvv~~~~~-~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI 122 (328)
T PRK11303 44 EHNYHPNAVAAGLRAGRTRSIGLIIPDLE-NTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALI 122 (328)
T ss_pred HhCCCCCHHHHHhhcCCCceEEEEeCCCC-CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344456543 3445679999886421 2221 22455678889999876654332221 24688665
Q ss_pred eccCchHHHHHHHHHHHhCCCeEEeCc
Q 024689 80 HKLTGKEWRQILEEYRQTHPEVTVLDP 106 (264)
Q Consensus 80 HKltd~~~~~~l~~y~~~hP~v~VIDP 106 (264)
=--........++++.+..=+++++|.
T Consensus 123 i~~~~~~~~~~~~~l~~~~iPvV~v~~ 149 (328)
T PRK11303 123 VSTSLPPEHPFYQRLQNDGLPIIALDR 149 (328)
T ss_pred EcCCCCCChHHHHHHHhcCCCEEEECC
Confidence 421111112234444444446778875
No 102
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=24.30 E-value=1.3e+02 Score=25.61 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=23.0
Q ss_pred EEEeccCch----HHHHHHHHHHHh-CCCeEEeCchhHHhh
Q 024689 77 IVLHKLTGK----EWRQILEEYRQT-HPEVTVLDPPYAIQH 112 (264)
Q Consensus 77 vILHKltd~----~~~~~l~~y~~~-hP~v~VIDP~~ai~~ 112 (264)
+++....+. .+...+.++..+ .|.++|||++.++..
T Consensus 71 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 71 FIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 444555442 234555555555 689999999998743
No 103
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=23.85 E-value=1e+02 Score=26.97 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.2
Q ss_pred CcEEEEecCCCCCCCCCCceEEE
Q 024689 57 GILFVAIDQNRPLSDQGPFDIVL 79 (264)
Q Consensus 57 gi~fv~ID~~~pl~~QgpfDvIL 79 (264)
++.++.-|....+.+.++||+|+
T Consensus 128 ~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 128 NVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CeEEEECCcccCCCcCCCcCEEE
Confidence 57889999877777778999987
No 104
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=23.84 E-value=3.2e+02 Score=24.63 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=46.2
Q ss_pred hccCCccc----cCCCcEEEEEEechhh--hhccchhhHHhHHHhcCcEEEEecCCCCCCC---------CCCceEEEec
Q 024689 17 LLSFPQTQ----QQSKLVVVGYALTSKK--TKSFLQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHK 81 (264)
Q Consensus 17 ~~~~~~~~----~~~~~~~VGy~l~~kK--~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~---------QgpfDvILHK 81 (264)
++-.|+.. ...+..+||+.++.-- .-.-...++...|+++|+.++-.+....-+. +..+|.||-=
T Consensus 48 lgY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 127 (342)
T PRK10014 48 LGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIA 127 (342)
T ss_pred hCCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 33445543 3345679999986421 1111223466788899988765544322111 2457866653
Q ss_pred cCchHHHHHHHHHHHhCCCeEEeC
Q 024689 82 LTGKEWRQILEEYRQTHPEVTVLD 105 (264)
Q Consensus 82 ltd~~~~~~l~~y~~~hP~v~VID 105 (264)
-.+......++...+..-+++.+|
T Consensus 128 ~~~~~~~~~~~~l~~~~iPvV~~~ 151 (342)
T PRK10014 128 GAAGSSDDLREMAEEKGIPVVFAS 151 (342)
T ss_pred CCCCCcHHHHHHHhhcCCCEEEEe
Confidence 222222334445555544677776
No 105
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.56 E-value=2.4e+02 Score=21.64 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=15.6
Q ss_pred hHHhHHHhcCcEEEEecCCCC
Q 024689 48 KLEGLARNKGILFVAIDQNRP 68 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~p 68 (264)
-+..+.++.|++.+.++.+.|
T Consensus 18 ~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred HHHHHHHHCCCEEEEcCCCCC
Confidence 345677889999988877655
No 106
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=23.37 E-value=65 Score=28.75 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCCCCCCCceEEEecc
Q 024689 57 GILFVAIDQNRPLSDQGPFDIVLHKL 82 (264)
Q Consensus 57 gi~fv~ID~~~pl~~QgpfDvILHKl 82 (264)
++.++.-|-...+++++|||.|+==.
T Consensus 124 nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 124 NVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp SEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred ceeEEEcchhhccccCCCcCEEEEee
Confidence 78899999998888999999887533
No 107
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=22.31 E-value=87 Score=24.86 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=16.2
Q ss_pred Eeeecc--ceEEEEEEECceE
Q 024689 199 EFVNHG--GVLFKVYIVGEAI 217 (264)
Q Consensus 199 EFINHg--gvLfKVYVIGd~v 217 (264)
.|+||- |-||.|..+||.=
T Consensus 4 ~YLNHPtFGlLy~Vc~~~e~~ 24 (88)
T PF12058_consen 4 TYLNHPTFGLLYRVCPVDEGQ 24 (88)
T ss_dssp -EEEETTTEEEEEEEEECTTE
T ss_pred ccccCCccchheeeeeCCCcc
Confidence 599998 9999999999853
No 108
>PRK04266 fibrillarin; Provisional
Probab=22.23 E-value=3.4e+02 Score=24.33 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=42.9
Q ss_pred CcEEEEEEechhhhhccchhhHHhHHHh-cCcEEEEecCCCCCCC---CCCceEEEeccCchH----HHHHHHHHHHhCC
Q 024689 28 KLVVVGYALTSKKTKSFLQPKLEGLARN-KGILFVAIDQNRPLSD---QGPFDIVLHKLTGKE----WRQILEEYRQTHP 99 (264)
Q Consensus 28 ~~~~VGy~l~~kK~~~f~~~~l~~~~~~-~gi~fv~ID~~~pl~~---QgpfDvILHKltd~~----~~~~l~~y~~~hP 99 (264)
...++|+=.++...+.+. ..|++ .++.++.-|...|... ..+||+|+|-+.+.. ..+++.++.+..-
T Consensus 96 ~g~V~avD~~~~ml~~l~-----~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG 170 (226)
T PRK04266 96 EGVVYAVEFAPRPMRELL-----EVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGG 170 (226)
T ss_pred CCeEEEEECCHHHHHHHH-----HHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCc
Confidence 357889988887655443 23333 4788887788754211 246999999876531 1234444555554
Q ss_pred CeEE
Q 024689 100 EVTV 103 (264)
Q Consensus 100 ~v~V 103 (264)
.++|
T Consensus 171 ~lvI 174 (226)
T PRK04266 171 YLLL 174 (226)
T ss_pred EEEE
Confidence 5555
No 109
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=1.6e+02 Score=26.72 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=43.9
Q ss_pred CCcEEEEEEechh-----hhhccchh-------hHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHH
Q 024689 27 SKLVVVGYALTSK-----KTKSFLQP-------KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEY 94 (264)
Q Consensus 27 ~~~~~VGy~l~~k-----K~~~f~~~-------~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y 94 (264)
...-|||..-.|+ |.+....+ +|..-.+-.|=+||.-|.+.|+. +-.+
T Consensus 72 ~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg~eFvfYDyN~p~d--------------------lp~~ 131 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYGTEFVFYDYNCPLD--------------------LPDE 131 (217)
T ss_pred ccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhccceeEEeccCCCCC--------------------CHHH
Confidence 4456788877776 33332111 12223344688999999999973 3367
Q ss_pred HHhCCCeEEeCchhHHhhhc
Q 024689 95 RQTHPEVTVLDPPYAIQHLH 114 (264)
Q Consensus 95 ~~~hP~v~VIDP~~ai~~L~ 114 (264)
++.|=+++|.|||---+..+
T Consensus 132 lk~~fdiivaDPPfL~~eCl 151 (217)
T KOG3350|consen 132 LKAHFDIIVADPPFLSEECL 151 (217)
T ss_pred HHhcccEEEeCCccccchhh
Confidence 88888999999995444433
No 110
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=21.06 E-value=2e+02 Score=27.95 Aligned_cols=62 Identities=19% Similarity=0.370 Sum_probs=41.5
Q ss_pred CcccHHHHHHHhhHhh---------------------hccCCccc---cCCCcEEEEEEechh---------hhhccchh
Q 024689 1 MRMMKEEIEEQTREEE---------------------LLSFPQTQ---QQSKLVVVGYALTSK---------KTKSFLQP 47 (264)
Q Consensus 1 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~---~~~~~~~VGy~l~~k---------K~~~f~~~ 47 (264)
|||-|+|+.+..||.| ..+-|.+. .+++.+-|+..-.+. |-....-.
T Consensus 213 lrMskqEVKdE~K~~EGdP~iK~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~Y~~~~~~aP~vvakG~~~~A~ 292 (347)
T TIGR00328 213 LKMTKQEVKDELKQSEGDPEVKGRIRQMQREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELAL 292 (347)
T ss_pred CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHH
Confidence 6888899888777765 23344443 457778787766554 33444444
Q ss_pred hHHhHHHhcCcEEEE
Q 024689 48 KLEGLARNKGILFVA 62 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ 62 (264)
.+.++|+++||-.+.
T Consensus 293 ~I~~~A~~~~vPi~~ 307 (347)
T TIGR00328 293 KIKEIARENNVPIVE 307 (347)
T ss_pred HHHHHHHHcCCCEEe
Confidence 677899999987763
No 111
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=20.74 E-value=1e+02 Score=27.44 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=30.9
Q ss_pred cEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEecc
Q 024689 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL 82 (264)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKl 82 (264)
..++|.=+++ .++..|++++++|+.-|.... ...++||+|+=-.
T Consensus 54 ~~v~gvD~s~---------~~~~~a~~~~~~~~~~d~~~~-~~~~~fD~v~~~~ 97 (255)
T PRK14103 54 AVIEALDSSP---------EMVAAARERGVDARTGDVRDW-KPKPDTDVVVSNA 97 (255)
T ss_pred CEEEEEECCH---------HHHHHHHhcCCcEEEcChhhC-CCCCCceEEEEeh
Confidence 3566776653 466777888999999998643 3346899887543
No 112
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=20.35 E-value=1.5e+02 Score=25.70 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHh-CCCeEEeCchhHHhhh
Q 024689 86 EWRQILEEYRQT-HPEVTVLDPPYAIQHL 113 (264)
Q Consensus 86 ~~~~~l~~y~~~-hP~v~VIDP~~ai~~L 113 (264)
.+.+.++++.++ .|+++|||++..++.-
T Consensus 110 ~l~~~i~~~~~~~~~~~vvID~l~~l~~~ 138 (242)
T cd00984 110 DIRSRARRLKKEHGLGLIVIDYLQLMSGS 138 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCchhcCCC
Confidence 455666666544 7899999999988644
No 113
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=20.07 E-value=47 Score=36.87 Aligned_cols=84 Identities=18% Similarity=0.408 Sum_probs=57.5
Q ss_pred chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeec-cccCCCCceeEEEEec
Q 024689 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL-VADGSAKSHELSLAYD 184 (264)
Q Consensus 106 P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPl-vA~Gs~~SH~Malvf~ 184 (264)
.|+.|+.--||...-+.|+++.... |.--.++. -++ .... -..+.||+++.|- +-.|. .|.++|+
T Consensus 1024 sP~~ID~AEnR~kFS~~Ld~i~v~Q-------p~Wkelt~-~~e-A~~F-~~~VgYP~lvRPSYVLSGa----AMnv~~~ 1089 (1435)
T KOG0370|consen 1024 SPEMIDSAENRFKFSRMLDSIGVDQ-------PAWKELTS-LEE-AKKF-AEKVGYPVLVRPSYVLSGA----AMNVVYS 1089 (1435)
T ss_pred ChHhhhhhhhHHHHHHHHHHcCCCc-------hhhhhhcc-HHH-HHHH-HHhcCCceEecccceecch----hhhhhhc
Confidence 5677888889998888888876543 33323321 011 1122 2468999999994 55555 5999999
Q ss_pred cCccCCC---------CCceeEEEeeec
Q 024689 185 QYSLKKL---------EPPLVLQEFVNH 203 (264)
Q Consensus 185 ~~gL~~L---------~~P~VlQEFINH 203 (264)
++.|+.. +.|+|+--||+.
T Consensus 1090 ~~dl~~~L~~A~~vs~dhPVVisKfie~ 1117 (1435)
T KOG0370|consen 1090 ESDLKSYLEQASAVSPDHPVVISKFIEG 1117 (1435)
T ss_pred HHHHHHHHHHHhhcCCCCCEEhHHhhcc
Confidence 9999632 469999999875
Done!