Query 024689
Match_columns 264
No_of_seqs 128 out of 155
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 4E-45 1.4E-49 342.3 22.8 225 25-252 14-253 (346)
2 1z2n_X Inositol 1,3,4-trisphos 99.9 1.7E-23 5.7E-28 188.7 17.1 195 25-231 7-206 (324)
3 1uc8_A LYSX, lysine biosynthes 99.1 6.6E-10 2.2E-14 96.5 10.1 159 48-220 15-191 (280)
4 3t7a_A Inositol pyrophosphate 99.0 3E-09 1E-13 99.3 12.3 187 26-224 4-228 (330)
5 1iow_A DD-ligase, DDLB, D-ALA\ 98.8 2.9E-08 9.9E-13 87.6 12.8 151 48-218 25-198 (306)
6 3r5x_A D-alanine--D-alanine li 98.8 6.8E-09 2.3E-13 92.4 7.8 155 48-217 26-192 (307)
7 3se7_A VANA; alpha-beta struct 98.7 1.3E-08 4.4E-13 93.3 6.6 149 49-215 27-222 (346)
8 4eg0_A D-alanine--D-alanine li 98.7 1.8E-07 6.2E-12 84.3 13.4 157 48-217 36-206 (317)
9 1i7n_A Synapsin II; synapse, p 98.6 1.3E-07 4.4E-12 87.5 10.6 136 74-225 68-220 (309)
10 2p0a_A Synapsin-3, synapsin II 98.6 3.3E-07 1.1E-11 86.1 11.0 136 74-225 85-237 (344)
11 1pk8_A RAT synapsin I; ATP bin 98.5 5.9E-07 2E-11 86.6 10.5 136 74-225 180-332 (422)
12 3q2o_A Phosphoribosylaminoimid 98.3 7.9E-06 2.7E-10 75.7 13.7 155 46-215 26-204 (389)
13 1gsa_A Glutathione synthetase; 98.3 1.5E-06 5E-11 76.4 8.2 157 48-223 23-226 (316)
14 2i87_A D-alanine-D-alanine lig 98.2 3.7E-06 1.3E-10 77.3 8.6 128 73-216 86-229 (364)
15 1ehi_A LMDDL2, D-alanine:D-lac 98.1 2.5E-05 8.7E-10 72.5 12.4 130 74-216 93-233 (377)
16 3k5i_A Phosphoribosyl-aminoimi 98.1 3.6E-05 1.2E-09 72.2 12.7 156 45-215 35-217 (403)
17 3ln6_A Glutathione biosynthesi 98.1 8.8E-06 3E-10 83.2 9.1 150 47-228 431-593 (750)
18 3ax6_A Phosphoribosylaminoimid 98.1 0.00011 3.9E-09 67.3 15.7 148 48-215 15-185 (380)
19 3orq_A N5-carboxyaminoimidazol 98.1 7.8E-05 2.7E-09 69.1 14.7 151 47-213 25-200 (377)
20 3vot_A L-amino acid ligase, BL 98.0 0.00019 6.5E-09 66.9 16.9 156 48-218 19-218 (425)
21 3aw8_A PURK, phosphoribosylami 98.0 3.9E-05 1.3E-09 70.1 11.0 150 48-215 13-188 (369)
22 1e4e_A Vancomycin/teicoplanin 97.9 3.4E-05 1.2E-09 70.2 9.8 100 100-216 116-223 (343)
23 2z04_A Phosphoribosylaminoimid 97.9 2.4E-05 8.1E-10 71.3 8.5 148 47-215 14-184 (365)
24 2pn1_A Carbamoylphosphate synt 97.9 8.4E-05 2.9E-09 66.4 11.4 101 100-215 98-202 (331)
25 4ffl_A PYLC; amino acid, biosy 97.9 0.00027 9.1E-09 64.4 14.6 140 48-216 15-176 (363)
26 3e5n_A D-alanine-D-alanine lig 97.9 0.0001 3.5E-09 69.0 12.0 129 74-217 117-257 (386)
27 3i12_A D-alanine-D-alanine lig 97.9 6E-05 2.1E-09 69.6 9.8 126 74-216 98-237 (364)
28 4e4t_A Phosphoribosylaminoimid 97.8 0.00011 3.6E-09 69.6 11.5 149 46-214 47-227 (419)
29 3k3p_A D-alanine--D-alanine li 97.8 5.5E-05 1.9E-09 71.1 9.2 174 30-216 38-259 (383)
30 3lwb_A D-alanine--D-alanine li 97.8 4.4E-05 1.5E-09 71.2 8.4 126 74-216 109-246 (373)
31 1kjq_A GART 2, phosphoribosylg 97.8 0.0001 3.4E-09 67.5 10.6 151 47-214 24-209 (391)
32 3tqt_A D-alanine--D-alanine li 97.8 0.0001 3.5E-09 68.9 10.8 129 74-216 98-238 (372)
33 3eth_A Phosphoribosylaminoimid 97.7 0.00038 1.3E-08 64.9 13.1 149 48-214 15-168 (355)
34 3lp8_A Phosphoribosylamine-gly 97.7 5.8E-05 2E-09 71.8 7.2 109 91-215 99-221 (442)
35 2fb9_A D-alanine:D-alanine lig 97.7 6.6E-05 2.3E-09 68.0 7.2 125 72-216 74-209 (322)
36 3df7_A Putative ATP-grAsp supe 97.7 0.0003 1E-08 63.5 11.6 109 73-215 68-177 (305)
37 2dwc_A PH0318, 433AA long hypo 97.7 0.00011 3.8E-09 68.6 8.9 151 47-214 32-217 (433)
38 3mjf_A Phosphoribosylamine--gl 97.7 7.8E-05 2.7E-09 70.6 7.6 110 90-215 82-205 (431)
39 3ln7_A Glutathione biosynthesi 97.6 0.00013 4.6E-09 74.7 9.4 153 46-228 435-599 (757)
40 2pvp_A D-alanine-D-alanine lig 97.6 0.00052 1.8E-08 63.8 11.6 128 74-217 107-247 (367)
41 2xcl_A Phosphoribosylamine--gl 97.6 0.00011 3.9E-09 68.2 7.1 99 100-213 86-198 (422)
42 2ip4_A PURD, phosphoribosylami 97.6 0.00018 6E-09 66.9 8.3 101 100-215 85-195 (417)
43 3ouz_A Biotin carboxylase; str 97.6 0.00029 1E-08 66.2 9.8 138 46-215 67-220 (446)
44 2yw2_A Phosphoribosylamine--gl 97.5 0.00015 5.2E-09 67.4 7.4 104 100-218 86-205 (424)
45 4fu0_A D-alanine--D-alanine li 97.5 0.00013 4.3E-09 67.2 6.1 131 74-218 97-237 (357)
46 2yrx_A Phosphoribosylglycinami 97.5 0.00022 7.6E-09 67.3 7.9 104 100-218 107-226 (451)
47 4dim_A Phosphoribosylglycinami 97.4 0.00014 4.8E-09 66.9 5.6 141 47-203 20-193 (403)
48 2qk4_A Trifunctional purine bi 97.4 0.00031 1.1E-08 66.2 7.8 100 100-214 112-226 (452)
49 3vmm_A Alanine-anticapsin liga 97.4 0.0016 5.5E-08 62.7 12.7 124 47-204 92-234 (474)
50 1a9x_A Carbamoyl phosphate syn 97.3 0.00043 1.5E-08 72.9 8.1 153 48-215 32-223 (1073)
51 1vkz_A Phosphoribosylamine--gl 97.3 0.0005 1.7E-08 64.2 7.5 99 102-215 93-204 (412)
52 2r85_A PURP protein PF1517; AT 97.3 0.0008 2.7E-08 59.7 8.4 131 47-203 14-178 (334)
53 1a9x_A Carbamoyl phosphate syn 97.2 0.0026 8.9E-08 67.0 12.3 102 100-215 658-769 (1073)
54 2dzd_A Pyruvate carboxylase; b 97.0 0.0019 6.5E-08 60.8 9.0 102 100-215 104-221 (461)
55 3jrx_A Acetyl-COA carboxylase 96.9 0.0051 1.7E-07 61.3 11.4 142 45-215 127-304 (587)
56 2w70_A Biotin carboxylase; lig 96.9 0.0011 3.9E-08 62.0 6.1 101 100-214 99-216 (449)
57 1ulz_A Pyruvate carboxylase N- 96.7 0.001 3.5E-08 62.4 3.8 102 100-215 98-215 (451)
58 2vpq_A Acetyl-COA carboxylase; 96.5 0.0022 7.7E-08 60.0 5.3 101 100-214 98-214 (451)
59 3glk_A Acetyl-COA carboxylase 96.5 0.0036 1.2E-07 61.5 6.9 105 100-215 148-288 (540)
60 2pbz_A Hypothetical protein; N 96.5 0.0024 8.1E-08 59.0 5.3 131 48-202 15-167 (320)
61 1w96_A ACC, acetyl-coenzyme A 96.5 0.0015 5.2E-08 63.6 3.7 104 101-215 158-294 (554)
62 2cqy_A Propionyl-COA carboxyla 96.4 6.8E-05 2.3E-09 56.3 -4.9 65 134-204 20-99 (108)
63 3n6r_A Propionyl-COA carboxyla 96.4 0.0041 1.4E-07 62.7 6.3 108 93-215 93-216 (681)
64 3hbl_A Pyruvate carboxylase; T 96.3 0.012 4.2E-07 62.7 10.1 138 46-215 66-219 (1150)
65 3u9t_A MCC alpha, methylcroton 96.3 0.0083 2.8E-07 60.4 7.9 110 100-222 125-253 (675)
66 3va7_A KLLA0E08119P; carboxyla 95.7 0.013 4.5E-07 63.0 6.8 108 93-215 122-244 (1236)
67 2qf7_A Pyruvate carboxylase pr 95.3 0.029 9.8E-07 60.0 7.5 102 100-215 118-235 (1165)
68 1wr2_A Hypothetical protein PH 93.3 0.041 1.4E-06 47.6 2.8 93 113-216 19-130 (238)
69 2r7k_A 5-formaminoimidazole-4- 92.6 0.21 7.3E-06 46.5 6.7 133 48-202 31-203 (361)
70 3ufx_B Succinyl-COA synthetase 83.7 0.61 2.1E-05 44.0 3.1 79 134-216 16-108 (397)
71 2nu8_B SCS-beta, succinyl-COA 79.2 1.8 6.3E-05 40.6 4.6 80 134-217 16-117 (388)
72 2io8_A Bifunctional glutathion 76.5 41 0.0014 33.6 13.7 157 48-224 398-600 (619)
73 2fp4_B Succinyl-COA ligase [GD 66.4 3.8 0.00013 38.6 3.4 96 134-233 16-143 (395)
74 3tig_A TTL protein; ATP-grAsp, 46.3 8.7 0.0003 36.2 2.2 148 49-213 20-209 (380)
75 3l6u_A ABC-type sugar transpor 44.0 41 0.0014 28.0 5.9 80 26-106 5-97 (293)
76 3l49_A ABC sugar (ribose) tran 43.2 66 0.0023 26.6 7.1 80 27-107 3-95 (291)
77 3gyb_A Transcriptional regulat 42.1 58 0.002 26.9 6.6 51 27-79 3-65 (280)
78 3s99_A Basic membrane lipoprot 40.5 46 0.0016 30.4 6.1 91 25-117 22-132 (356)
79 2l2q_A PTS system, cellobiose- 36.6 1E+02 0.0035 23.0 6.6 79 44-125 19-101 (109)
80 3uug_A Multiple sugar-binding 35.3 1.1E+02 0.0037 25.9 7.3 78 28-105 2-91 (330)
81 3jwg_A HEN1, methyltransferase 34.4 80 0.0027 25.3 6.1 77 29-106 54-141 (219)
82 1jx6_A LUXP protein; protein-l 31.8 2E+02 0.0068 24.4 8.5 98 6-106 20-137 (342)
83 3o1i_D Periplasmic protein TOR 31.1 1.2E+02 0.004 25.2 6.7 42 26-67 2-45 (304)
84 3dp7_A SAM-dependent methyltra 31.0 63 0.0022 28.8 5.3 49 57-107 230-289 (363)
85 3ou2_A SAM-dependent methyltra 31.0 98 0.0034 24.3 6.0 41 30-80 70-113 (218)
86 1vbf_A 231AA long hypothetical 29.4 31 0.0011 28.0 2.7 25 57-81 117-141 (231)
87 8abp_A L-arabinose-binding pro 28.3 1.2E+02 0.0041 25.2 6.4 75 29-105 2-89 (306)
88 1vlm_A SAM-dependent methyltra 28.0 63 0.0022 26.1 4.4 34 48-81 76-109 (219)
89 3nbm_A PTS system, lactose-spe 27.3 2E+02 0.007 21.8 7.1 78 43-124 20-104 (108)
90 3jy6_A Transcriptional regulat 26.0 1.4E+02 0.0047 24.6 6.3 79 26-106 4-93 (276)
91 3kjx_A Transcriptional regulat 24.8 2.7E+02 0.0093 23.8 8.2 95 6-104 43-153 (344)
92 1jg1_A PIMT;, protein-L-isoasp 24.5 43 0.0015 27.6 2.7 24 57-80 141-164 (235)
93 3egc_A Putative ribose operon 24.1 1.5E+02 0.0051 24.5 6.2 79 26-106 5-95 (291)
94 3mi6_A Alpha-galactosidase; NE 23.3 65 0.0022 33.0 4.2 62 41-103 456-524 (745)
95 3m9w_A D-xylose-binding peripl 22.9 1.7E+02 0.0059 24.5 6.4 77 29-106 2-91 (313)
96 3miz_A Putative transcriptiona 22.7 2.3E+02 0.0079 23.5 7.1 44 25-68 9-55 (301)
97 3jwh_A HEN1; methyltransferase 22.7 64 0.0022 25.9 3.4 78 29-107 54-142 (217)
98 3brq_A HTH-type transcriptiona 22.6 1.8E+02 0.0063 23.7 6.4 80 26-106 16-109 (296)
99 2plc_A PI-PLC, phosphatidylino 22.1 83 0.0028 27.6 4.3 44 56-106 56-105 (274)
100 2yxe_A Protein-L-isoaspartate 21.8 54 0.0018 26.3 2.8 51 29-81 103-153 (215)
101 3gwz_A MMCR; methyltransferase 21.7 1.6E+02 0.0056 26.1 6.2 50 56-107 252-309 (369)
102 3lbf_A Protein-L-isoaspartate 21.0 57 0.0019 26.0 2.7 25 57-81 126-150 (210)
103 1mhx_A Immunoglobulin-binding 20.8 1.1E+02 0.0038 21.5 3.7 23 203-225 7-30 (65)
104 3dbi_A Sugar-binding transcrip 20.4 3.1E+02 0.011 23.3 7.6 80 26-106 58-151 (338)
105 2x7x_A Sensor protein; transfe 20.1 2.3E+02 0.0078 24.0 6.6 79 26-106 3-95 (325)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=4e-45 Score=342.26 Aligned_cols=225 Identities=33% Similarity=0.542 Sum_probs=196.8
Q ss_pred cCCCcEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCc------------hHHHHHHH
Q 024689 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE 92 (264)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd------------~~~~~~l~ 92 (264)
...++++|||||++||+++|++++|...++++|+++++||++.++.+|++||+||||+++ ..|.+.|+
T Consensus 14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~ 93 (346)
T 2q7d_A 14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ 93 (346)
T ss_dssp GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence 455789999999999999999999999999999999999999999999999999999998 36899999
Q ss_pred HHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC-CCChhHHHHhcCCccceEeeecccc
Q 024689 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD 171 (264)
Q Consensus 93 ~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~-~~~~~~~l~~agL~fPlI~KPlvA~ 171 (264)
+|...||+++||||+++++.+.||..|++.|.+...+.....|.+|+++++... ..+..+.+...++.||+|+||+.++
T Consensus 94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 173 (346)
T 2q7d_A 94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH 173 (346)
T ss_dssp HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 999999999999999999999999999999988644334457999999999643 3556667777899999999999999
Q ss_pred CCCCceeEEEEeccCccCCCCCceeEEEeeeccceEEEEEEECceEEEEEecCCCCCCccccccCCcceecC--cccccc
Q 024689 172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP--RVSCAA 249 (264)
Q Consensus 172 Gs~~SH~Malvf~~~gL~~L~~P~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~~~~~~~~~~g~~~f~--~vs~~~ 249 (264)
||. ||.|++|++.++|..+..|+++||||||+|+.|||||||+++.++.|+|+||+..+. ...|.++|. ++|+.+
T Consensus 174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g 250 (346)
T 2q7d_A 174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPE 250 (346)
T ss_dssp STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTT
T ss_pred cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCC
Confidence 998 999999999999999999999999999999999999999999999999999987765 245677776 588776
Q ss_pred ccC
Q 024689 250 ASA 252 (264)
Q Consensus 250 ~~~ 252 (264)
+++
T Consensus 251 ~~~ 253 (346)
T 2q7d_A 251 SSS 253 (346)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.91 E-value=1.7e-23 Score=188.70 Aligned_cols=195 Identities=18% Similarity=0.331 Sum_probs=166.9
Q ss_pred cCCCcEEEEEEechhhhhccchhhHHhHHHhcCcEE--EEecCCCCCCCCC-CceEEEeccCch--HHHHHHHHHHHhCC
Q 024689 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILF--VAIDQNRPLSDQG-PFDIVLHKLTGK--EWRQILEEYRQTHP 99 (264)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~f--v~ID~~~pl~~Qg-pfDvILHKltd~--~~~~~l~~y~~~hP 99 (264)
...+..+||++..++++ ++ .+...++++|+++ +.+|.+.|+..++ ++|+|+|++++. .+.+.|+.+...++
T Consensus 7 ~~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~ 82 (324)
T 1z2n_X 7 TTKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHP 82 (324)
T ss_dssp ---CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCT
T ss_pred ccCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCC
Confidence 44556799999998887 54 6777789999999 9999987887777 899999999876 67888999998899
Q ss_pred CeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeE
Q 024689 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (264)
Q Consensus 100 ~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~M 179 (264)
.+.+++++++++...||..+.+.+++. .+.+|+++.++. .+++.+.+...|+.||+|+||..++|+..||.+
T Consensus 83 g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv 154 (324)
T 1z2n_X 83 KVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQM 154 (324)
T ss_dssp TSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEE
T ss_pred CCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCccceee
Confidence 999999999999999999999998874 367899998853 223334455567889999999998888888999
Q ss_pred EEEeccCccCCCCCceeEEEeeeccceEEEEEEECceEEEEEecCCCCCCcc
Q 024689 180 SLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQ 231 (264)
Q Consensus 180 alvf~~~gL~~L~~P~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~~~~ 231 (264)
.++.+++.|..+..|+++||||++.|.-+.|||+|+.+..+.|++++|+..+
T Consensus 155 ~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g 206 (324)
T 1z2n_X 155 KIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRC 206 (324)
T ss_dssp EEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred EEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCC
Confidence 9999999999999999999999999999999999999999999999998765
No 3
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.05 E-value=6.6e-10 Score=96.54 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=110.4
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCC-------CCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSD-------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSML 120 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~-------QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml 120 (264)
.+...++++|+.++.+|.+..... ...+|++++...+......+.++.++. ++.++.|+++++...|+..+.
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~~~ 93 (280)
T 1uc8_A 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL-GIPVVNRPEVIEACGDKWATS 93 (280)
T ss_dssp HHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHHT-TCCEESCHHHHHHHHBHHHHH
T ss_pred HHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHHC-CCceeCCHHHHHHhCCHHHHH
Confidence 467788999999999997654311 236896666554332233455555555 567778999999999999999
Q ss_pred HHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------C--
Q 024689 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------L-- 191 (264)
Q Consensus 121 ~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L-- 191 (264)
+.+++. .+.+|+++.++. .+++.+.+. .+.||+|+||....|+ ..+.++.+++.|.. +
T Consensus 94 ~~l~~~-------gi~~p~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~~~---~gv~~v~~~~el~~~~~~~~~~~~ 160 (280)
T 1uc8_A 94 VALAKA-------GLPQPKTALATD-REEALRLME--AFGYPVVLKPVIGSWG---RLLAXXXXXXXXXXXXXXKEVLGG 160 (280)
T ss_dssp HHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEECSBCCBC---SHHHHHHHHHC------------C
T ss_pred HHHHHc-------CcCCCCeEeeCC-HHHHHHHHH--HhCCCEEEEECCCCCc---ccceecccccccchhhhhHhhhcc
Confidence 998874 366899988852 222222222 3569999999998774 44455666555432 2
Q ss_pred --CCceeEEEeeeccceEEEEEEECceEEEE
Q 024689 192 --EPPLVLQEFVNHGGVLFKVYIVGEAIKVV 220 (264)
Q Consensus 192 --~~P~VlQEFINHggvLfKVYVIGd~v~vv 220 (264)
..++++||||+..+.=+.++++|+.+...
T Consensus 161 ~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~ 191 (280)
T 1uc8_A 161 FQHQLFYIQEYVEKPGRDIRVFVVGERAIAA 191 (280)
T ss_dssp TTTTCEEEEECCCCSSCCEEEEEETTEEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEEECCEEEEE
Confidence 46899999999878889999999987553
No 4
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.99 E-value=3e-09 Score=99.27 Aligned_cols=187 Identities=21% Similarity=0.268 Sum_probs=124.2
Q ss_pred CCCcEEEEEEechhhhhccchhhHH-hHHHhcCcEEEEec----CCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCC
Q 024689 26 QSKLVVVGYALTSKKTKSFLQPKLE-GLARNKGILFVAID----QNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPE 100 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~~~~l~-~~~~~~gi~fv~ID----~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~ 100 (264)
+.+.++||.|--+||.+|---+.++ .+.+..-++.+--. ++.|.++=--+|++|--.++-==-+...+|.+.. .
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr-~ 82 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR-N 82 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH-C
T ss_pred CCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh-C
Confidence 4567999999999997775544544 34333344444222 3445555556788877776531123445565554 4
Q ss_pred eEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC-----Chh---HHHH--hcCCccceEeeeccc
Q 024689 101 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-----SIP---DVVL--KAGLTLPLVAKPLVA 170 (264)
Q Consensus 101 v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~-----~~~---~~l~--~agL~fPlI~KPlvA 170 (264)
..+|..+.++..+.||...++.|++. .|.+|+.++++.+.. ++. +.+. ...+.+|+|.||+-+
T Consensus 83 p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~G 155 (330)
T 3t7a_A 83 PFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSA 155 (330)
T ss_dssp CEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBT
T ss_pred CceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccccc
Confidence 67899999999999999999999873 578999999975432 000 1121 234679999999985
Q ss_pred cCCCCceeEEEEec----------------cCc------cCCCCCceeEEEeeeccceEEEEEEECceE-EEEEecC
Q 024689 171 DGSAKSHELSLAYD----------------QYS------LKKLEPPLVLQEFVNHGGVLFKVYIVGEAI-KVVRRFS 224 (264)
Q Consensus 171 ~Gs~~SH~Malvf~----------------~~g------L~~L~~P~VlQEFINHggvLfKVYVIGd~v-~vv~R~S 224 (264)
. -|...|-|. .++ ...-+...++||||..+|.=.||||||+.+ ....|.|
T Consensus 156 s----dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~s 228 (330)
T 3t7a_A 156 E----DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS 228 (330)
T ss_dssp T----CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEEC
T ss_pred c----cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeC
Confidence 3 344444443 111 222345899999999999999999999777 5688887
No 5
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.84 E-value=2.9e-08 Score=87.55 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=108.7
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCC---CCCceEEEeccCc---h--HHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTG---K--EWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQS 118 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~---QgpfDvILHKltd---~--~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ 118 (264)
.+...+++.|++++.+|.+..... ...+|+|+..+.. + .+...++ .. ++.++ .++++++...|+..
T Consensus 25 ~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e----~~-g~~~~g~~~~~~~~~~dK~~ 99 (306)
T 1iow_A 25 AVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLE----LM-GLPYTGSGVMASALSMDKLR 99 (306)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHH----HH-TCCBSSCCHHHHHHHHCHHH
T ss_pred HHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHH----Hc-CCCccCCCHHHHHHHcCHHH
Confidence 466778899999999998743222 2478999877632 1 2322233 22 56665 78999999999999
Q ss_pred HHHHHHhccccCCCCcccCCceEEEccCCCChhH-------HHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-
Q 024689 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD-------VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK- 190 (264)
Q Consensus 119 ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~-------~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~- 190 (264)
+.+.+++. .+.+|+++.++.. ++.+ .. ...+.||+|+||....|+ ..+.++.+.+.|..
T Consensus 100 ~~~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~-~~~~~~p~vvKP~~g~~~---~gv~~v~~~~el~~~ 166 (306)
T 1iow_A 100 SKLLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAE-ISALGLPVIVKPSREGSS---VGMSKVVAENALQDA 166 (306)
T ss_dssp HHHHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHH-HHTTCSSEEEEETTCCTT---TTCEEESSGGGHHHH
T ss_pred HHHHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhH-HhccCCCEEEEeCCCCCC---CCEEEeCCHHHHHHH
Confidence 99998874 3668999888632 2211 01 235789999999988765 45678888877652
Q ss_pred ------CCCceeEEEeeeccceEEEEEEECceEE
Q 024689 191 ------LEPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (264)
Q Consensus 191 ------L~~P~VlQEFINHggvLfKVYVIGd~v~ 218 (264)
...++++||||+ |.-|-|.++|+.+.
T Consensus 167 ~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~ 198 (306)
T 1iow_A 167 LRLAFQHDEEVLIEKWLS--GPEFTVAILGEEIL 198 (306)
T ss_dssp HHHHTTTCSEEEEEECCC--CCEEEEEEETTEEC
T ss_pred HHHHHhhCCCEEEEeCcC--CEEEEEEEECCCcc
Confidence 357999999998 68899999998753
No 6
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.82 E-value=6.8e-09 Score=92.42 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=109.2
Q ss_pred hHHhHHHhcCcEEEEecCCCC---CCCCCCceEEEeccCchHHH-HHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRP---LSDQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQC 122 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~p---l~~QgpfDvILHKltd~~~~-~~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~ 122 (264)
.+...+++.|++.+.+|.+.. +.....+|+|+.-+.+.... ..++.+.+.. ++.++-| +++++...|+..+.+.
T Consensus 26 ~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~~~~ 104 (307)
T 3r5x_A 26 EMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESL-GIPYSGSNMLSSGICMDKNISKKI 104 (307)
T ss_dssp HHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHH-TCCBSSSCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHH
Confidence 355666788999999999843 33335899999988654211 1223333333 5777765 8999999999999999
Q ss_pred HHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-------CCce
Q 024689 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPL 195 (264)
Q Consensus 123 l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L-------~~P~ 195 (264)
+++. .|.+|++++++.. ++..... ...+.||+|+||....| |..+.++.+++.|... ..++
T Consensus 105 l~~~-------Gip~p~~~~~~~~-~~~~~~~-~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~ 172 (307)
T 3r5x_A 105 LRYE-------GIETPDWIELTKM-EDLNFDE-LDKLGFPLVVKPNSGGS---SVGVKIVYDKDELISMLETVFEWDSEV 172 (307)
T ss_dssp HHHT-------TCCCCCEEEEESS-SCCCHHH-HHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEE
T ss_pred HHHC-------CCCCCCEEEEeCh-hhhhHHH-HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCE
Confidence 8874 4678999998642 2222211 12468999999988766 5667889888777532 5799
Q ss_pred eEEEeeeccceEEEEEEECceE
Q 024689 196 VLQEFVNHGGVLFKVYIVGEAI 217 (264)
Q Consensus 196 VlQEFINHggvLfKVYVIGd~v 217 (264)
++||||. |.-|-|.|+|+.+
T Consensus 173 lvee~i~--G~e~~v~v~~g~~ 192 (307)
T 3r5x_A 173 VIEKYIK--GEEITCSIFDGKQ 192 (307)
T ss_dssp EEEECCC--SEEEEEEEETTEE
T ss_pred EEECCcC--CEEEEEEEECCEE
Confidence 9999999 6899999999976
No 7
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.72 E-value=1.3e-08 Score=93.34 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=108.3
Q ss_pred HHhHHHhcCcEEEEecCCCCC--------------------------------------CCCCCceEEEeccCchHHH-H
Q 024689 49 LEGLARNKGILFVAIDQNRPL--------------------------------------SDQGPFDIVLHKLTGKEWR-Q 89 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl--------------------------------------~~QgpfDvILHKltd~~~~-~ 89 (264)
+.+..++.|++.++||.++.. ..+..+|+|+.-+.+.... .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 445556789999999987642 0123689998888654221 1
Q ss_pred HHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeec
Q 024689 90 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (264)
Q Consensus 90 ~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPl 168 (264)
.++.+.+.. ++.++-| +.++...+|+..+.+.+++. .+.+|+++.++..... ....+.||+|+||.
T Consensus 107 ~iq~~le~~-gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLELS-GIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHHH-CCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEES
T ss_pred HHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeC
Confidence 344444433 5666665 88999999999999998875 4778999998643211 13468999999999
Q ss_pred cccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECc
Q 024689 169 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 169 vA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
...| |..+.++.+++.|.. ...++++||||+ |.-|-|.|+|+
T Consensus 174 ~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~ 222 (346)
T 3se7_A 174 RSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGN 222 (346)
T ss_dssp SCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEE
T ss_pred CCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEec
Confidence 8766 566788999877752 357999999999 78999999998
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.70 E-value=1.8e-07 Score=84.28 Aligned_cols=157 Identities=14% Similarity=0.071 Sum_probs=108.1
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCC---CCCceEEEeccCchH-HHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQC 122 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~---QgpfDvILHKltd~~-~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~ 122 (264)
.+....++.|++.+.||....... ...+|+++--+.+.. ....++.+.+.. ++.++ .+++++...+|+..+.+.
T Consensus 36 ~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~ 114 (317)
T 4eg0_A 36 LVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFY-GIRYTGSGVLGSALGLDKFRTKLV 114 (317)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHHH-TCEESSCCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHH
Confidence 355667889999999996543222 257999986665421 012334444444 67777 667899999999999999
Q ss_pred HHhccccCCCCcccCCceEEEccCCCChhHHHH--hcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCC
Q 024689 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVL--KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEP 193 (264)
Q Consensus 123 l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~--~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~-------~L~~ 193 (264)
+++. .+.+|+++.++.. ++..+... ...+.||+|+||....| |..+.++.+++.|. ....
T Consensus 115 l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~ 183 (317)
T 4eg0_A 115 WQQT-------GVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEGS---SVAVLKVKTADALPAALSEAATHDK 183 (317)
T ss_dssp HHHT-------TCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCS
T ss_pred HHHC-------CcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCC
Confidence 8875 4678999988642 23322221 13478999999988765 45667889988875 2356
Q ss_pred ceeEEEeeeccceEEEEEEECceE
Q 024689 194 PLVLQEFVNHGGVLFKVYIVGEAI 217 (264)
Q Consensus 194 P~VlQEFINHggvLfKVYVIGd~v 217 (264)
++++||||.+ |.=|-|.|+||.+
T Consensus 184 ~~lvEe~i~~-G~E~~v~vl~~~~ 206 (317)
T 4eg0_A 184 IVIVEKSIEG-GGEYTACIAGDLD 206 (317)
T ss_dssp EEEEEECCCS-SEEEEEEEETTCC
T ss_pred eEEEEcCCCC-CcEEEEEEECCcc
Confidence 8999999997 7889999999954
No 9
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.64 E-value=1.3e-07 Score=87.52 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=96.2
Q ss_pred CceEEEeccCch------HHHHHHHHHHHhCCCeEEeCchhHHhhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 024689 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (264)
Q Consensus 74 pfDvILHKltd~------~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR----~~ml~~l~~l~~~~~~~~i~vP~~v~i 143 (264)
.+|++|=+.... .|+..+. +.+.. .+++|+++++|....|+ ..+++.+..+.. ..+..|.....
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~-~le~~-GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~ 141 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVI-GMQYA-GLPSINSLESIYNFCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYY 141 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHH-HHHHT-TCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred cCCEEEEecccccccccchHHHHHH-HHHHC-CccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCCEEee
Confidence 479887776543 3453333 33333 89999999999999999 566777666543 12342333333
Q ss_pred ccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-------CCceeEEEeeeccceEEEEEEECce
Q 024689 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 144 ~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L-------~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
. +. .+.+ ..+.||+|+||+.+++ ...+.++-+++.+.++ ...+++||||. .|.=+.|||||++
T Consensus 142 ~-~~---~~~~--~~~g~PvVvK~~~Gs~---G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 142 P-NH---REML--TLPTFPVVVKIGHAHS---GMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNN 211 (309)
T ss_dssp S-SG---GGGS--SCCCSSEEEEESSCST---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-Ch---hhhh--hccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCE
Confidence 2 21 1222 2367999999999654 5679999998887532 57889999999 7999999999999
Q ss_pred EEEEEecCC
Q 024689 217 IKVVRRFSL 225 (264)
Q Consensus 217 v~vv~R~SL 225 (264)
+....|.|.
T Consensus 212 v~a~~Rr~~ 220 (309)
T 1i7n_A 212 YKAYMRTSI 220 (309)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEEcC
Confidence 999999885
No 10
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.56 E-value=3.3e-07 Score=86.08 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=97.1
Q ss_pred CceEEEeccCch------HHHHHHHHHHHhCCCeEEeCchhHHhhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 024689 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (264)
Q Consensus 74 pfDvILHKltd~------~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR----~~ml~~l~~l~~~~~~~~i~vP~~v~i 143 (264)
.+|++|=+.... .|+. +.++.+.. .+.+|+++++|....|+ ..+++.+..+.. ..+..|.....
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~-vl~~le~~-GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~ 158 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRS-LVIGLQYG-GLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFF 158 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHH-HHHHHHHT-TCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHH-HHHHHHHC-CceecCCHHHHHhhCCchHHHHHHHHHHHHCCC----CCCCCCCEEec
Confidence 689888777552 2553 33344443 89999999999999999 667777766543 12342333333
Q ss_pred ccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 144 ~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
. +..++ + ..+.||+|+||+.+++ ...+.++-+++.+.+ .+..+++||||+ .|.=+.|||||++
T Consensus 159 ~-~~~~~---~--~~~g~PvVvK~~~Gs~---G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 159 P-NHKPM---V--TAPHFPVVVKLGHAHA---GMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSN 228 (344)
T ss_dssp S-SSTTC---C--CCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chhhh---h--hccCCCEEEEeCCCCc---eeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCE
Confidence 2 22221 1 2468999999999654 567999999888763 256788999999 7999999999999
Q ss_pred EEEEEecCC
Q 024689 217 IKVVRRFSL 225 (264)
Q Consensus 217 v~vv~R~SL 225 (264)
+....|.|.
T Consensus 229 vva~~R~~~ 237 (344)
T 2p0a_A 229 YKAYMRTSI 237 (344)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEecC
Confidence 998888774
No 11
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.47 E-value=5.9e-07 Score=86.57 Aligned_cols=136 Identities=14% Similarity=0.181 Sum_probs=96.1
Q ss_pred CceEEEeccCch------HHHHHHHHHHHhCCCeEEeCchhHHhhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 024689 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (264)
Q Consensus 74 pfDvILHKltd~------~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR----~~ml~~l~~l~~~~~~~~i~vP~~v~i 143 (264)
.+|+||=+.... .|+..+. +.+.. .+.+|+++++|....|+ ..+++.+..+... .+..|.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr-~lE~~-GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~----~iP~t~~t~~ 253 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVI-GLQYA-GIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTE----EFPLIDQTFY 253 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHH-HHHHT-TCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTT----TSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHHH-HHHHC-CccccCCHHHHHHhCCccHHHHHHHHHHHhCCCC----CCCCCceEec
Confidence 579888776543 3554443 44443 89999999999999999 5666666665431 2332333333
Q ss_pred ccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-------CCceeEEEeeeccceEEEEEEECce
Q 024689 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 144 ~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L-------~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
. +.. +.+ ..+.||+|+||+.+++ ...+.++-+++.+..+ ...+++||||. .+.-+.|||||++
T Consensus 254 ~-~~~---~~i--~~~g~PvVvKp~~GS~---G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 254 P-NHK---EML--SSTTYPVVVKMGHAHS---GMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQN 323 (422)
T ss_dssp S-SGG---GCC--CCSSSSEEEEESSCCT---TTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chh---hhh--hccCCCEEEEeCCCCc---eeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCE
Confidence 2 211 112 2467999999999654 5679999998887632 56788999999 7899999999999
Q ss_pred EEEEEecCC
Q 024689 217 IKVVRRFSL 225 (264)
Q Consensus 217 v~vv~R~SL 225 (264)
+....|.|.
T Consensus 324 vva~~Rr~~ 332 (422)
T 1pk8_A 324 YKAYMRTSV 332 (422)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEEcC
Confidence 998888774
No 12
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.31 E-value=7.9e-06 Score=75.67 Aligned_cols=155 Identities=10% Similarity=0.114 Sum_probs=99.9
Q ss_pred hhhHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCchHHH-H-----------------HHHHHHHhCCCeEEeCc
Q 024689 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEWR-Q-----------------ILEEYRQTHPEVTVLDP 106 (264)
Q Consensus 46 ~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfD-vILHKltd~~~~-~-----------------~l~~y~~~hP~v~VIDP 106 (264)
...+...+++.|++.+-+|.+..-....-.| .+.--..|.+.. + .+-++..++. + +--+
T Consensus 26 g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~~~~~~l~~~g-~-~~~~ 103 (389)
T 3q2o_A 26 GRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQWLEKHA-Y-LPQG 103 (389)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCHHHHHHHHHHS-C-CTTC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccHHHHHHHHhhC-c-cCCC
Confidence 4456677889999999999864322211122 222223332110 0 1112222221 1 4567
Q ss_pred hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccC
Q 024689 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186 (264)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~ 186 (264)
+++++...||..+.+.++++ .+.+|++..+++ .+++.+... .+.||+|+||....| .+..|.++.+++
T Consensus 104 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~~~~--~g~Gv~~v~~~~ 171 (389)
T 3q2o_A 104 SQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAIA--ELSYPSVLKTTTGGY--DGKGQVVLRSEA 171 (389)
T ss_dssp SHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEESSCCS--SSCCEEEESSGG
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCCC--CCCCeEEECCHH
Confidence 78999999999999998875 467899998853 222222222 467999999976432 357899999988
Q ss_pred ccCCC-----CCceeEEEeeeccceEEEEEEECc
Q 024689 187 SLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 187 gL~~L-----~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.|... ..++++||||+ |+.=|-|.+++|
T Consensus 172 el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~ 204 (389)
T 3q2o_A 172 DVDEARKLANAAECILEKWVP-FEKEVSVIVIRS 204 (389)
T ss_dssp GHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEc
Confidence 87643 46999999999 457788888865
No 13
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.31 E-value=1.5e-06 Score=76.41 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=103.0
Q ss_pred hHHhHHHhcCcEEEEecCCCCC-C-----------------------------CCCCceEEEeccCc---hHH--HHHHH
Q 024689 48 KLEGLARNKGILFVAIDQNRPL-S-----------------------------DQGPFDIVLHKLTG---KEW--RQILE 92 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl-~-----------------------------~QgpfDvILHKltd---~~~--~~~l~ 92 (264)
.+...++++|++++.+|.+... . +-..+|+|+-.... .++ ...+.
T Consensus 23 ~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 102 (316)
T 1gsa_A 23 AMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102 (316)
T ss_dssp HHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHHHHHH
Confidence 4667788999999998864210 0 00136777765532 222 22333
Q ss_pred HHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccC
Q 024689 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (264)
Q Consensus 93 ~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~G 172 (264)
+..+.. .+.++.++++++...|+..+.+.++ .+|+++.++. .+++.+.+.+. . |+|+||....|
T Consensus 103 ~~l~~~-g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~~-~~~~~~~~~~~--~-p~vvKP~~g~~ 166 (316)
T 1gsa_A 103 ERAEEK-GTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTRN-KAQLKAFWEKH--S-DIILKPLDGMG 166 (316)
T ss_dssp HHHHHT-TCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEESC-HHHHHHHHHHH--S-SEEEECSSCCT
T ss_pred HHHHHc-CCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeCC-HHHHHHHHHHc--C-CEEEEECCCCC
Confidence 433343 4677899999999999988777543 5799888752 22233333333 3 99999998765
Q ss_pred CCCceeEEEEe-ccCccC-------CC-CCceeEEEeeecc-ceEEEEEEECceEEE--EEec
Q 024689 173 SAKSHELSLAY-DQYSLK-------KL-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV--VRRF 223 (264)
Q Consensus 173 s~~SH~Malvf-~~~gL~-------~L-~~P~VlQEFINHg-gvLfKVYVIGd~v~v--v~R~ 223 (264)
+ ..+.++. +++.|. .. ..|+++||||+.. +.=+-++|+|+.+.. +.|.
T Consensus 167 g---~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~ 226 (316)
T 1gsa_A 167 G---ASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARI 226 (316)
T ss_dssp T---TTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEE
T ss_pred c---ccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEe
Confidence 4 5567777 666653 22 3699999999973 788899999998763 4443
No 14
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.19 E-value=3.7e-06 Score=77.34 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=87.3
Q ss_pred CCceEEEecc---CchHHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC
Q 024689 73 GPFDIVLHKL---TGKEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS 148 (264)
Q Consensus 73 gpfDvILHKl---td~~~~~~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~ 148 (264)
..+|+|+--+ .++. ..++...+.. ++.++-| ++++...+|+..+.+.+++. .+.+|+++.++....
T Consensus 86 ~~~D~v~~~~~g~~~ed--~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~ 155 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGED--GTIQGLFEVL-DVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEY 155 (364)
T ss_dssp SBCSEEEEECCCSSSCT--THHHHHHHHH-TCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHH
T ss_pred cCCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhh
Confidence 3678887544 2221 1122322222 4666655 89999999999999998875 366899998853210
Q ss_pred -----ChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 149 -----SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 149 -----~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
+....+ ...+.||+|+||....|+ ..+.+|.+++.|.. ...++++||||+ |.-|-|.|+|+.
T Consensus 156 ~~~~~~~~~~~-~~~~g~PvvvKP~~g~~s---~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 229 (364)
T 2i87_A 156 EKYEHNILKLV-NDKLNYPVFVKPANLGSS---VGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHHHH-HHHCCSSEEEEESSCSSC---TTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESS
T ss_pred cccchhHHHHH-HHhcCCCEEEEeCCCCCC---CCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCC
Confidence 001111 134789999999987764 56888999877752 357999999998 688999999984
No 15
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.11 E-value=2.5e-05 Score=72.51 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=88.9
Q ss_pred CceEEEeccCchHH-HHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 024689 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (264)
Q Consensus 74 pfDvILHKltd~~~-~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~--~ 149 (264)
.+|+|+--+.+..- ...++...+.. ++.++ -+++++...+|+..+.+.+++. .|.+|++++++.... .
T Consensus 93 ~~D~v~~~~~g~~gedg~~~~lle~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 164 (377)
T 1ehi_A 93 DFDIFFPVVHGNLGEDGTLQGLFKLL-DKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANNW 164 (377)
T ss_dssp CCSEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGGC
T ss_pred CCCEEEEecCCCCCcCHHHHHHHHHc-CCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccchH
Confidence 68888766533210 01234444443 67776 7789999999999999998864 467899999864321 1
Q ss_pred hhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccceEEEEEEECce
Q 024689 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 150 ~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~-------~L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
....+. ..+.||+|+||....|+ ..+.+|.+++.|. ....++++||||. |..=|-|.|+||.
T Consensus 165 ~~~~~~-~~~g~PvvVKP~~~~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 233 (377)
T 1ehi_A 165 SWDKIV-AELGNIVFVKAANQGSS---VGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN-GARELEVGVIGND 233 (377)
T ss_dssp CHHHHH-HHHCSCEEEEESSCCTT---TTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-CSCEEEEEEEESS
T ss_pred HHHHHH-HhcCCCEEEEeCCCCCC---cCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-CCceEEEEEEcCC
Confidence 122221 23679999999987664 5678899887764 2356999999997 2267889999983
No 16
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.06 E-value=3.6e-05 Score=72.17 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=99.9
Q ss_pred chhhHHhHHHhcCcEEEEecCCCCC-CCCC--CceEEEeccCchHHHHHH------------------HHHHHhCCCeEE
Q 024689 45 LQPKLEGLARNKGILFVAIDQNRPL-SDQG--PFDIVLHKLTGKEWRQIL------------------EEYRQTHPEVTV 103 (264)
Q Consensus 45 ~~~~l~~~~~~~gi~fv~ID~~~pl-~~Qg--pfDvILHKltd~~~~~~l------------------~~y~~~hP~v~V 103 (264)
....+...|++.|+..+.+| +..- ..|- .+..+.-..+|......+ -++.++ .+.+
T Consensus 35 lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~~~~~l~~l~~--g~~v 111 (403)
T 3k5i_A 35 LGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHVDTYALEEVAS--EVKI 111 (403)
T ss_dssp HHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCSCHHHHHHHTT--TSEE
T ss_pred HHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCCCHHHHHHHHc--CCcc
Confidence 33456677888999999999 4321 1121 123344444443221111 122222 4556
Q ss_pred eCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEcc-CCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 024689 104 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (264)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~-~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv 182 (264)
.-++++++...||..+.+.++++ .|.+|++..++. +.+++.+.. ..+.||+|+||.... ..+..+.++
T Consensus 112 ~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~--~~~g~P~VvKp~~gg--~~g~Gv~~v 180 (403)
T 3k5i_A 112 EPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKVG--EQLGYPLMLKSKTMA--YDGRGNFRV 180 (403)
T ss_dssp SSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHHH--HHHCSSEEEEESSSC--CTTTTEEEE
T ss_pred CcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHHH--HHhCCCEEEEeCCCC--cCCCCEEEE
Confidence 77889999999999999988764 477899998862 222222222 246799999997543 235678899
Q ss_pred eccCccCC----C-CCceeEEEeeeccceEEEEEEECc
Q 024689 183 YDQYSLKK----L-EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 183 f~~~gL~~----L-~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.+++.|.. + ..++++||||+. +.=+=|.+++|
T Consensus 181 ~~~~el~~a~~~~~~~~~lvEe~i~~-~~E~sv~v~~~ 217 (403)
T 3k5i_A 181 NSQDDIPEALEALKDRPLYAEKWAYF-KMELAVIVVKT 217 (403)
T ss_dssp CSTTSHHHHHHHTTTSCEEEEECCCE-EEEEEEEEEEC
T ss_pred CCHHHHHHHHHhcCCCcEEEecCCCC-CeEEEEEEEEc
Confidence 99888753 2 469999999973 56666777765
No 17
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.06 E-value=8.8e-06 Score=83.18 Aligned_cols=150 Identities=14% Similarity=0.150 Sum_probs=105.7
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCCC---CCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHH
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSDQ---GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCV 123 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~Q---gpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l 123 (264)
..++..|+++|++++.||.+.++-.. ..+|++.. -.+.-.++..++...-|+..+.+.+
T Consensus 431 ~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL 492 (750)
T 3ln6_A 431 QLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKIL 492 (750)
T ss_dssp HHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHH
Confidence 34777899999999999998776532 24454432 1234556777888777999999988
Q ss_pred HhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEe---ccCccCC-------CCC
Q 024689 124 ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK-------LEP 193 (264)
Q Consensus 124 ~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf---~~~gL~~-------L~~ 193 (264)
.+. .|.+|++.++.. .++..+.+. ..+.||+|+||....| +..+.++. +.+.+.. ...
T Consensus 493 ~~~-------GIPvP~~~~~~~-~~ea~~~~~-~~~g~PvVVKP~~G~~---G~GV~iv~~~~s~eel~~a~~~~~~~~~ 560 (750)
T 3ln6_A 493 DEK-------HFPTPFGDEFTD-RKEALNYFS-QIQDKPIVVKPKSTNF---GLGISIFKTSANLASYEKAIDIAFTEDS 560 (750)
T ss_dssp HHT-------TCCCCCCCCEET-TTTHHHHHH-HSSSSCEEEEETTCCS---SSSCEEESSCCCHHHHHHHHHHHHHHCS
T ss_pred HHC-------CcCCCCEEEECC-HHHHHHHHH-HhcCCcEEEEeCCCCC---CCCEEEEeCCCCHHHHHHHHHHHHhhCC
Confidence 864 467899988853 333333332 3578999999966544 55788887 5555431 256
Q ss_pred ceeEEEeeeccceEEEEEEECceEEEEEecCCCCC
Q 024689 194 PLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (264)
Q Consensus 194 P~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~ 228 (264)
++++||||. |.=|-|+|+||++.-+.+.--+++
T Consensus 561 ~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v 593 (750)
T 3ln6_A 561 AILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANV 593 (750)
T ss_dssp EEEEEECCC--SEEEEEEEETTEEEEEEEEECCEE
T ss_pred cEEEEeccC--CCEEEEEEECCEEEEEEEEecceE
Confidence 899999998 789999999999976555444443
No 18
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.06 E-value=0.00011 Score=67.29 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=95.2
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC-CC--------------------CCceEEEeccCchHHHHHHHHHHHhCCCeEEeCc
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS-DQ--------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDP 106 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~-~Q--------------------gpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP 106 (264)
.+...+++.|++.+-+|.+..-. .+ ..+|+|+--..+.. ..+.++.++. .+.+.-+
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~--~~~~~~l~~~-gi~~~~~ 91 (380)
T 3ax6_A 15 MMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHID--VQTLKKLYNE-GYKIHPS 91 (380)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCSC--HHHHHHHHHT-TCEESSC
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCCC--HHHHHHHHHC-CCeECCC
Confidence 45556788899999998853211 11 12344432111111 1122233333 4456688
Q ss_pred hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeecccc-CCCCceeEEEEecc
Q 024689 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQ 185 (264)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~-Gs~~SH~Malvf~~ 185 (264)
+++++...|+..+.+.+++. .+.+|++..++.. + + ....+.||+|+||.... | +..+.++.++
T Consensus 92 ~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~---~--~~~~~~~P~vvKp~~~~y~---g~Gv~~v~~~ 155 (380)
T 3ax6_A 92 PYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDL-E---S--DVREFGFPVVQKARKGGYD---GRGVFIIKNE 155 (380)
T ss_dssp HHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSH-H---H--HHHTTCSSEEEEESCCC--------EEEECSG
T ss_pred HHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCH-H---H--HHHhcCCCEEEEecCCCCC---CCCeEEECCH
Confidence 88999999999999988874 3668999887531 1 1 22357899999999764 4 5678889998
Q ss_pred CccCC-CCCceeEEEeeeccceEEEEEEECc
Q 024689 186 YSLKK-LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 186 ~gL~~-L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
+.|.. ++.++++||||+. |.-|-|.+++|
T Consensus 156 ~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~ 185 (380)
T 3ax6_A 156 KDLENAIKGETYLEEFVEI-EKELAVMVARN 185 (380)
T ss_dssp GGGGGCCCSSEEEEECCCE-EEEEEEEEEEC
T ss_pred HHHHHHhcCCEEEEeccCC-CeeEEEEEEEC
Confidence 88764 3479999999986 67888888875
No 19
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.06 E-value=7.8e-05 Score=69.08 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=94.4
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCCCCCce-EEEeccCchHHH-------------------HHHHHHHHhCCCeEEeCc
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEWR-------------------QILEEYRQTHPEVTVLDP 106 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~QgpfD-vILHKltd~~~~-------------------~~l~~y~~~hP~v~VIDP 106 (264)
..+...|++.|++.+-+|.+..-....-.| .+.--.+|.+.. ..+.+..+.. .|.-+
T Consensus 25 ~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~~~~l~~l~~~~---~v~p~ 101 (377)
T 3orq_A 25 KMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKY---NIPQG 101 (377)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSCHHHHHHHHHHS---CCTTT
T ss_pred HHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccCHHHHHHHhhhc---CCCCC
Confidence 346677888999999999754311111112 222223332211 1122222221 23345
Q ss_pred hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccC
Q 024689 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186 (264)
Q Consensus 107 ~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~ 186 (264)
+++++...||..+.+.++++ .+.+|++..+++ .+++.+... .+.||+|+||.... ..++.+.++.+++
T Consensus 102 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~gg--~~g~Gv~~v~~~~ 169 (377)
T 3orq_A 102 YQAIQLLQDRLTEKETLKSA-------GTKVVPFISVKE-STDIDKAIE--TLGYPFIVKTRFGG--YDGKGQVLINNEK 169 (377)
T ss_dssp THHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECS-STHHHHHHH--HTCSSEEEEESSSC--CTTTTEEEECSTT
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEeCCCC--CCCCCeEEECCHH
Confidence 68888899999999888765 467899988853 333333333 46799999997653 2356788999988
Q ss_pred ccCC-----CCCceeEEEeeeccceEEEEEEE
Q 024689 187 SLKK-----LEPPLVLQEFVNHGGVLFKVYIV 213 (264)
Q Consensus 187 gL~~-----L~~P~VlQEFINHggvLfKVYVI 213 (264)
.|.. ...++++||||+ +..=|-|.++
T Consensus 170 el~~a~~~~~~~~~ivEe~i~-g~~E~sv~~~ 200 (377)
T 3orq_A 170 DLQEGFKLIETSECVAEKYLN-IKKEVSLTVT 200 (377)
T ss_dssp SHHHHHHHHTTSCEEEEECCC-EEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEccCC-CCEEEEEEEE
Confidence 8753 247999999998 3356777777
No 20
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.03 E-value=0.00019 Score=66.89 Aligned_cols=156 Identities=12% Similarity=0.138 Sum_probs=95.9
Q ss_pred hHHhHHHhcCcEEEEecCCCC-CCCC-CCceEEEe-ccC-ch-HHHHHHHHHHHhCC-CeEE--e---------------
Q 024689 48 KLEGLARNKGILFVAIDQNRP-LSDQ-GPFDIVLH-KLT-GK-EWRQILEEYRQTHP-EVTV--L--------------- 104 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~p-l~~Q-gpfDvILH-Klt-d~-~~~~~l~~y~~~hP-~v~V--I--------------- 104 (264)
-++..|++.|++.+-+|-+.. ...+ .-.|-.++ -.+ |. .+.+.+.+..++++ +.++ -
T Consensus 19 ~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lg 98 (425)
T 3vot_A 19 FIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALN 98 (425)
T ss_dssp HHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcC
Confidence 355788999999999876432 2223 23454333 222 32 34555555555544 3221 1
Q ss_pred ---CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE
Q 024689 105 ---DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (264)
Q Consensus 105 ---DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal 181 (264)
-++++++...|+..|-+.+.+. .|.+|++..+++. + .+..+.+.||+|+||.... .|..+.+
T Consensus 99 lpg~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~----~~~~~~~g~P~vvKp~~g~---gs~Gv~~ 163 (425)
T 3vot_A 99 LPGLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-A----DLENRKLSYPLVVKPVNGF---SSQGVVR 163 (425)
T ss_dssp CSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-G----GGTTCCCCSSEEEEESCC--------CEE
T ss_pred CCCCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-H----HHHHhhcCCcEEEEECCCC---CCCCceE
Confidence 2567888999999998888764 3668999988632 2 2334679999999997654 4678899
Q ss_pred EeccCccCC------------------CCCceeEEEeeeccceEEEEEEECceEE
Q 024689 182 AYDQYSLKK------------------LEPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (264)
Q Consensus 182 vf~~~gL~~------------------L~~P~VlQEFINHggvLfKVYVIGd~v~ 218 (264)
+.+++.|.. -..++++||||+-.-+-.=+++.+..+.
T Consensus 164 v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~~g~~~ 218 (425)
T 3vot_A 164 VDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLSIQGNVH 218 (425)
T ss_dssp ECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCSCEEEEEEEEETTEEE
T ss_pred echHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecCcEEEEEEEEeCCcEE
Confidence 999877642 2468999999974322223344444443
No 21
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.99 E-value=3.9e-05 Score=70.10 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=93.2
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC-CC-------------------CCceEEEeccCchHHHHHHHHHHHhCCCeEEeCch
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS-DQ-------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPP 107 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~-~Q-------------------gpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~ 107 (264)
.+...+++.|++.+-+|.+..-. .+ ..+|+|+-=..+. ....++.+.+.. .+--++
T Consensus 13 ~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~~l~~~g---~~g~~~ 88 (369)
T 3aw8_A 13 MLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENV-PVEAARRLEGRL---PLYPPA 88 (369)
T ss_dssp HHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTC-CHHHHHHHHHHS---CBSSCH
T ss_pred HHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCc-CHHHHHHHHHcC---CcCCCH
Confidence 34455677788888887653210 01 2356654222221 122222222222 566788
Q ss_pred hHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeecccc-CCCCceeEEEEeccC
Q 024689 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQY 186 (264)
Q Consensus 108 ~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~-Gs~~SH~Malvf~~~ 186 (264)
++++...|+..+.+.+++. .|.+|++..+++ .++..+.+ ..+.||+|+||.... | +..+.++.+++
T Consensus 89 ~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~~~~---g~Gv~~v~~~~ 155 (369)
T 3aw8_A 89 KALEVAQDRLREKTFFQGL-------GVPTPPFHPVDG-PEDLEEGL--KRVGLPALLKTRRGGYD---GKGQALVRTEE 155 (369)
T ss_dssp HHHHHHTCHHHHHHHHHHH-------TCCCCCEEEESS-HHHHHHHH--TTTCSSEEEEECCC---------EEEECSHH
T ss_pred HHHHHhcCHHHHHHHHHHC-------CCCCCCceeeCC-HHHHHHHH--HHcCCCEEEEEcCCCCC---cceEEEECCHH
Confidence 8999999999999988875 366899988852 22222222 357899999999876 6 45677888877
Q ss_pred ccC----CC-CCceeEEEeeeccceEEEEEEECc
Q 024689 187 SLK----KL-EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 187 gL~----~L-~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.|. .+ ..++++||||.. |.-|-|.+++|
T Consensus 156 el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 188 (369)
T 3aw8_A 156 EALEALKALGGRGLILEGFVPF-DREVSLLAVRG 188 (369)
T ss_dssp HHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEEC
Confidence 664 23 468999999986 57778888875
No 22
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.94 E-value=3.4e-05 Score=70.17 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=77.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
++.++ -++.++...+|+..+.+.+++. .+.+|+++.++... +.. ...+.||+|+||....|+ ..
T Consensus 116 gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~-~~~----~~~~~~PvvvKP~~~~~s---~G 180 (343)
T 1e4e_A 116 GIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDD-RPV----AATFTYPVFVKPARSGSS---FG 180 (343)
T ss_dssp TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTC-CCC----GGGSCSCEEEEESSCCTT---TT
T ss_pred CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechh-hhh----hhccCCCEEEEeCCCCCC---CC
Confidence 56666 4588999999999999998874 36689999886432 211 145789999999997764 45
Q ss_pred EEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 179 LSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 179 Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
+.+|.+++.|.. ...++++||||. |.-|-|.|+|+.
T Consensus 181 v~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 223 (343)
T 1e4e_A 181 VKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNS 223 (343)
T ss_dssp CEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEET
T ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCC
Confidence 788999888752 357999999998 789999999875
No 23
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.93 E-value=2.4e-05 Score=71.32 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=79.2
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCC-----CC-----------CCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHH
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLS-----DQ-----------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAI 110 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~-----~Q-----------gpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai 110 (264)
..+...+++.|++.+.+|.+.... +. ..+|+|+--..+... ..+ ++.+. .+.-+++++
T Consensus 14 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~~-~~~-~~l~~----~~g~~~~~~ 87 (365)
T 2z04_A 14 WMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIKD-EVL-EKCES----KLIPNPQAL 87 (365)
T ss_dssp HHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCCH-HHH-HHHTT----TBSSCTHHH
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCcH-HHH-HHHhh----hcCCCHHHH
Confidence 346667788999999999864321 10 136777754433222 222 23322 566778999
Q ss_pred hhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeecccc-CCCCceeEEEEeccCccC
Q 024689 111 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQYSLK 189 (264)
Q Consensus 111 ~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~-Gs~~SH~Malvf~~~gL~ 189 (264)
+...|+..+.+.+++. .+.+|++..++ .+++.+.+ ..+.||+|+||.... |+ ..+.++.+++.|.
T Consensus 88 ~~~~dK~~~~~~l~~~-------gip~p~~~~~~--~~~~~~~~--~~~~~P~vvKp~~~~~~g---~Gv~~v~~~~el~ 153 (365)
T 2z04_A 88 YVKKSRIREKLFLKKH-------GFPVPEFLVIK--RDEIIDAL--KSFKLPVVIKAEKLGYDG---KGQYRIKKLEDAN 153 (365)
T ss_dssp HHHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC----------------------
T ss_pred HHhhCHHHHHHHHHHc-------CCCCCCEEEEc--HHHHHHHH--HhcCCCEEEEEcCCCcCC---CCeEEECCHHHHH
Confidence 9999999999988764 36689998775 22322222 246799999999876 64 4577788877765
Q ss_pred CC------CCceeEEEeeeccceEEEEEEECc
Q 024689 190 KL------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 190 ~L------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.. ..++++||||.. |.=|-|.+++|
T Consensus 154 ~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 184 (365)
T 2z04_A 154 QVVKNHDKEESFIIEEFVKF-EAEISCIGVRD 184 (365)
T ss_dssp -----------CEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHHhccCCCEEEEccCCC-CEEEEEEEEEC
Confidence 32 368999999986 66788888864
No 24
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.90 E-value=8.4e-05 Score=66.38 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=57.5
Q ss_pred CeE-EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~-VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+. +.-++++++...|+..+.+.+++. .+.+|+++... +++.+.+....+.||+|+||....| |..
T Consensus 98 g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~g---~~g 164 (331)
T 2pn1_A 98 GVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGSA---SIE 164 (331)
T ss_dssp TCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC--------
T ss_pred CcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCCC---CCC
Confidence 453 456788899999999999988875 35678875421 1222223224688999999988766 567
Q ss_pred EEEEeccCccCCC---CCceeEEEeeeccceEEEEEEECc
Q 024689 179 LSLAYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 179 Malvf~~~gL~~L---~~P~VlQEFINHggvLfKVYVIGd 215 (264)
+.++.+++.|... ..++++||||.. .-|-|.+++|
T Consensus 165 v~~v~~~~el~~~~~~~~~~lvee~i~G--~e~~v~~~~d 202 (331)
T 2pn1_A 165 VRRVETVEEVEQLFSKNTDLIVQELLVG--QELGVDAYVD 202 (331)
T ss_dssp ------------------CEEEEECCCS--EEEEEEEEEC
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEecCCC--cEEEEEEEEe
Confidence 7888888877643 369999999983 6777777653
No 25
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.88 E-value=0.00027 Score=64.40 Aligned_cols=140 Identities=20% Similarity=0.257 Sum_probs=89.7
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCCC----------------------CCceEEEeccCchHHHHHHHHHHHhCCCeEEeC
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSDQ----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~Q----------------------gpfDvILHKltd~~~~~~l~~y~~~hP~v~VID 105 (264)
.+...|++.|+..+-+|.+..-... ..+|+|+==..+..... +.....+.-.+++.-
T Consensus 15 ~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~~~~~~~g~ 93 (363)
T 4ffl_A 15 EAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIE-FLNSIKEKFSCPVLF 93 (363)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHH-HHHHHGGGCSSCBCC
T ss_pred HHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHH-HHHHHHHHCCCccCC
Confidence 4566789999999999976532211 12333322111111122 222333333556777
Q ss_pred chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEecc
Q 024689 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (264)
Q Consensus 106 P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~ 185 (264)
++++++...||..+-+.+++.. +.+|.+. .+.||+|+||....| +..|.++.++
T Consensus 94 ~~~a~~~~~dK~~~k~~l~~~g-------ip~~~~~----------------~ig~P~vvKp~~g~g---~~gv~~v~~~ 147 (363)
T 4ffl_A 94 DFEAYRISRDKKKSKDYFKSIG-------VPTPQDR----------------PSKPPYFVKPPCESS---SVGARIIYDD 147 (363)
T ss_dssp CHHHHHHHTSHHHHHHHHHHTT-------CCCCCBS----------------CSSSCEEEECSSCCT---TTTCEEEC--
T ss_pred CHHHHHHhhCHHHHHHHHHhcC-------CCCCCce----------------ecCCCEEEEECCCCC---CcCeEEeccH
Confidence 8899999999999999988754 3355442 357999999976554 5678899999
Q ss_pred CccCCCCCceeEEEeeeccceEEEEEEECce
Q 024689 186 YSLKKLEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 186 ~gL~~L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
+.+.....++++||||. |.-|=|.+++|.
T Consensus 148 ~~~~~~~~~~~~ee~i~--g~e~sv~~~~d~ 176 (363)
T 4ffl_A 148 KDLEGLEPDTLVEEYVE--GEVVSLEVVGDG 176 (363)
T ss_dssp ----CCCTTCEEEECCC--SEEEEEEEEEES
T ss_pred HHhhhhccchhhhhhcc--CcEEEEEEEEEC
Confidence 99999999999999996 566777777653
No 26
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.87 E-value=0.0001 Score=69.04 Aligned_cols=129 Identities=16% Similarity=0.252 Sum_probs=89.2
Q ss_pred CceEEEeccCchHHH-HHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC---C
Q 024689 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---S 148 (264)
Q Consensus 74 pfDvILHKltd~~~~-~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~---~ 148 (264)
.+|+|+-=+.+..-. ..+|.+.+.. ++.++ -++.++...+|+..+.+.+++. .|.+|+++.++... .
T Consensus 117 ~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 188 (386)
T 3e5n_A 117 QIDVVFPIVHGTLGEDGSLQGLLRMA-NLPFVGSGVLGSAVAMDKDMAKRVLRDA-------RLAVAPFVCFDRHTAAHA 188 (386)
T ss_dssp CCSEEEEEECSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEEEHHHHTTC
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEEeCcccchh
Confidence 577766555443211 1355555544 56655 4568999999999999988874 47789999886321 1
Q ss_pred ChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECceE
Q 024689 149 SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAI 217 (264)
Q Consensus 149 ~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~v 217 (264)
++.+.. ..+.||+|+||....|+ -.+.+|.+++.|.. ...++++||||. |.=|=|.|+||..
T Consensus 189 ~~~~~~--~~lg~PvvVKP~~ggss---~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~ 257 (386)
T 3e5n_A 189 DVDTLI--AQLGLPLFVKPANQGSS---VGVSQVRTADAFAAALALALAYDHKVLVEAAVA--GREIECAVLGNAV 257 (386)
T ss_dssp CHHHHH--HHHCSSEEEEESBSCSS---TTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEECSSS
T ss_pred hHHHHH--HhcCCCEEEEECCCCcC---CCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--CeEEEEEEEeCCC
Confidence 222222 34689999999987764 55678999888752 356899999998 5888899998853
No 27
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=97.85 E-value=6e-05 Score=69.63 Aligned_cols=126 Identities=14% Similarity=0.273 Sum_probs=88.1
Q ss_pred CceEEEeccC---chHHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--
Q 024689 74 PFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-- 147 (264)
Q Consensus 74 pfDvILHKlt---d~~~~~~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~-- 147 (264)
.+|+|+-=+. +++ ..+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .+.+|+++.++...
T Consensus 98 ~~D~vf~~lhG~~gEd--g~iq~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~ 167 (364)
T 3i12_A 98 TVDVIFPIVHGTLGED--GSLQGMLRVA-NLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRH 167 (364)
T ss_dssp CCSEEEECCCSTTTTS--SHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGG
T ss_pred CCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccc
Confidence 5787764443 332 1344555554 5666654 78999999999999998874 47789999986432
Q ss_pred -CChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 148 -SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 148 -~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
.++.+.. ..+.||+|+||....| |..+.++.+++.|.. ...++++||||. |.=|=|.|+||.
T Consensus 168 ~~~~~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 237 (364)
T 3i12_A 168 AFSFAEVE--SRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGND 237 (364)
T ss_dssp GCCHHHHH--HHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred hhhHHHHH--HhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCC
Confidence 1322222 2467999999997655 466778888877752 256899999998 477888999875
No 28
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.84 E-value=0.00011 Score=69.61 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=95.9
Q ss_pred hhhHHhHHHhcCcEEEEecCCCCCC-----C---CC-------------CceEEEeccCchHHHHHHHHHHHhCCCeEEe
Q 024689 46 QPKLEGLARNKGILFVAIDQNRPLS-----D---QG-------------PFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (264)
Q Consensus 46 ~~~l~~~~~~~gi~fv~ID~~~pl~-----~---Qg-------------pfDvILHKltd~~~~~~l~~y~~~hP~v~VI 104 (264)
...+...|++.|+.++-+|.+..-. + .+ ..|+|+--. +.....+-++.++. ..+.
T Consensus 47 g~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~--e~~~~~~~~~l~~~--~~vg 122 (419)
T 4e4t_A 47 GRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEF--ENVPAASLDFLART--TFVA 122 (419)
T ss_dssp HHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECC--TTCCHHHHHHHHTT--SEES
T ss_pred HHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEcc--CcCCHHHHHHHHcc--CCcC
Confidence 3456677889999999998653210 0 01 235554111 11111222333444 4778
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhc--C----CccceEeeeccccCCCCcee
Q 024689 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKA--G----LTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~a--g----L~fPlI~KPlvA~Gs~~SH~ 178 (264)
-++++++...||..+-+.++++ .|.+|++..+++ .+.+.++ . + ||+|+||.. .| ..+..
T Consensus 123 p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~-----~~e~~~~~~~~~~~~-~P~VvKp~~-~g-~~G~G 187 (419)
T 4e4t_A 123 PAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIES-----AAALAALDDAALDAV-LPGILKTAR-LG-YDGKG 187 (419)
T ss_dssp SCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECS-----HHHHHTSCHHHHHTT-CSEEEEESS-SC-CTTTT
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECC-----HHHHHHHHHhhcccc-CCEEEEecC-CC-CCCCc
Confidence 8899999999999999998875 467899998853 1222221 2 7 999999962 22 34678
Q ss_pred EEEEeccCccCC----C-CCceeEEEeeeccceEEEEEEEC
Q 024689 179 LSLAYDQYSLKK----L-EPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 179 Malvf~~~gL~~----L-~~P~VlQEFINHggvLfKVYVIG 214 (264)
+.++.+++.|.. + ..++++||||+. +.=+=|.+++
T Consensus 188 v~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~ 227 (419)
T 4e4t_A 188 QVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIAR 227 (419)
T ss_dssp EEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEE
T ss_pred eEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEE
Confidence 899999887753 2 469999999986 4445566664
No 29
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.82 E-value=5.5e-05 Score=71.08 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=109.0
Q ss_pred EEEEEEe---chhhhhccchh-hHHhHHHhcCcEEEEecCCCC------------------CCCC---------------
Q 024689 30 VVVGYAL---TSKKTKSFLQP-KLEGLARNKGILFVAIDQNRP------------------LSDQ--------------- 72 (264)
Q Consensus 30 ~~VGy~l---~~kK~~~f~~~-~l~~~~~~~gi~fv~ID~~~p------------------l~~Q--------------- 72 (264)
.+|+..+ |.-+.=|+..- .+....++.|++.++||.++. +...
T Consensus 38 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
T 3k3p_A 38 ETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIY 117 (383)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGC
T ss_pred CeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccccc
Confidence 4677765 33343343322 244455678999999998753 0010
Q ss_pred CCceEEEeccCchHH-HHHHHHHHHhCCCeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--
Q 024689 73 GPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-- 148 (264)
Q Consensus 73 gpfDvILHKltd~~~-~~~l~~y~~~hP~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~-- 148 (264)
..+|+|+-=+.+..- ...+|.+.+.. +++++- ++.++...+|+..+.+.+++.. .|.+|+++.++....
T Consensus 118 ~~~D~vf~~lhG~~GEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~G------~Ipvp~~~~~~~~~~~~ 190 (383)
T 3k3p_A 118 EEEAVVFPVLHGPMGEDGSIQGFLEVL-KMPYVGTNILSSSVAMDKITTNQVLESAT------TIPQVAYVALIEGEPLE 190 (383)
T ss_dssp CTTCEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHHC------CCCBCCEEEEETTSCHH
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHhCC------CcCCCCEEEEeCccchh
Confidence 147877655543210 01344444444 566654 5788999999999999988752 167899999864321
Q ss_pred ChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 149 SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 149 ~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
+..... ...+.||+|+||....| |..+.++.+++.|.. ...++++||||+ |.=|-|.|+||.
T Consensus 191 ~~~~~~-~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~ 259 (383)
T 3k3p_A 191 SKLAEV-EEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNT 259 (383)
T ss_dssp HHHHHH-HHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred HHHHHH-HHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCC
Confidence 111121 24588999999988765 666788989877752 256899999998 788999999974
No 30
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.82 E-value=4.4e-05 Score=71.21 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=89.2
Q ss_pred CceEEEeccCc---hHHHHHHHHHHHhCCCeEEeCc-hhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCC
Q 024689 74 PFDIVLHKLTG---KEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS 149 (264)
Q Consensus 74 pfDvILHKltd---~~~~~~l~~y~~~hP~v~VIDP-~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~ 149 (264)
.+|+|+-=+.+ ++ ..+|.+.+.. ++.++-| +.++...+|+..+.+.+.+. .|.+|+++.++.....
T Consensus 109 ~~D~vfp~lhG~~gEd--g~iq~lle~~-gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGED--GTIQGLLELA-GVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRST 178 (373)
T ss_dssp TCSEEEECCEETTEEC--CHHHHHHHHH-TCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCC
T ss_pred CccEEEECCCCCCCcc--HHHHHHHHHc-CCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccc
Confidence 46766554422 21 1233343333 5777766 78999999999999998875 4778999999643321
Q ss_pred -hhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 150 -IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 150 -~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
..+. ...+.||+|+||....| |..+.+|.+++.|.. ...++++||||. |.=|-|.|+|+.
T Consensus 179 ~~~~~--~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 246 (373)
T 3lwb_A 179 LHRQE--CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMP 246 (373)
T ss_dssp CCHHH--HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECT
T ss_pred hhHHH--HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECC
Confidence 1222 34578999999998776 455778999888752 367999999999 788999999874
No 31
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.81 E-value=0.0001 Score=67.52 Aligned_cols=151 Identities=11% Similarity=0.162 Sum_probs=92.8
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCCC-----------------------CCceEEEeccCchHHHHHHHHHHHhCCCeEE
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSDQ-----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~Q-----------------------gpfDvILHKltd~~~~~~l~~y~~~hP~v~V 103 (264)
..+...+++.|+..+.+|.+...... ..+|+|+-=.-+. ..+.+ +..++. .+.+
T Consensus 24 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~-~~~~~-~~l~~~-gi~~ 100 (391)
T 1kjq_A 24 KEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI-ATDML-IQLEEE-GLNV 100 (391)
T ss_dssp HHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHH-HHHHHT-TCEE
T ss_pred HHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC-CHHHH-HHHHhC-CCCc
Confidence 35667778899999999875321100 1344444322111 01112 222232 3455
Q ss_pred eCchhHHhhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 024689 104 LDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (264)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l-~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv 182 (264)
.-++++++...||..+.+.+ ++. .+.+|++..+++ .+++.+.+. .+.||+|+||.... .+..+.++
T Consensus 101 ~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v 167 (391)
T 1kjq_A 101 VPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFADS-ESLFREAVA--DIGYPCIVKPVMSS---SGKGQTFI 167 (391)
T ss_dssp SSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEEESCC------CCCEEE
T ss_pred CCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeCC-HHHHHHHHH--hcCCCEEEEeCCCC---CCCCeEEE
Confidence 66788999999999888887 543 467899988852 222222222 36799999998654 45678899
Q ss_pred eccCccCC-----------CCCceeEEEeeeccceEEEEEEEC
Q 024689 183 YDQYSLKK-----------LEPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 183 f~~~gL~~-----------L~~P~VlQEFINHggvLfKVYVIG 214 (264)
.+++.|.. -..++++||||.. |.=|-|.+++
T Consensus 168 ~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 209 (391)
T 1kjq_A 168 RSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVS 209 (391)
T ss_dssp CSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEE
Confidence 99877642 1468999999985 4556666664
No 32
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.81 E-value=0.0001 Score=68.89 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=88.2
Q ss_pred CceEEEeccCchHH-HHHHHHHHHhCCCeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 024689 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (264)
Q Consensus 74 pfDvILHKltd~~~-~~~l~~y~~~hP~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~--~ 149 (264)
.+|+|+-=+.+..- ...+|.+.+.. ++.++= ++.++...+|+..+.+.+++. .|.+|+++.++.... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELL-NLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 58888765544310 01244555544 666664 467899999999999998875 477899999864322 1
Q ss_pred hhHHHHhcCCccc-eEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccceEEEEEEECce
Q 024689 150 IPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 150 ~~~~l~~agL~fP-lI~KPlvA~Gs~~SH~Malvf~~~gL~-------~L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
..+.. ...+.|| +|+||....| |..+.+|.+++.|. ....++++||||. |.=|=|.|+||.
T Consensus 170 ~~~~~-~~~lg~P~vvVKP~~ggs---s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 238 (372)
T 3tqt_A 170 VYQRL-LDRWGTSELFVKAVSLGS---SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNG 238 (372)
T ss_dssp HHHHH-HHHC---CEEEEESSCCS---GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESS
T ss_pred HHHHH-HHhcCCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCC
Confidence 12222 2357899 9999987654 67789999988774 2367999999998 688999999986
No 33
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.73 E-value=0.00038 Score=64.88 Aligned_cols=149 Identities=10% Similarity=0.034 Sum_probs=94.8
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCCCC-CceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhc
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSDQG-PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADM 126 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~Qg-pfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l 126 (264)
.+...|++.|++++..|.+.|-.-.+ ..|+|.--..... .+.++...+.. .|.-++++++...||..+-+.++++
T Consensus 15 m~~~aa~~lG~~v~~~~~~a~~~~~~l~~d~it~e~e~v~-~~~l~~l~~~~---~v~p~~~a~~~~~DK~~~k~~l~~~ 90 (355)
T 3eth_A 15 MLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWP-ETALTRQLARH---PAFVNRDVFPIIADRLTQKQLFDKL 90 (355)
T ss_dssp HHHHHHGGGTCEEEEECTTCCGGGCCCTTSEEEESCSCCC-CCHHHHHHHTC---TTBTTTTHHHHHHSHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEECCCCCCCceEEcccCCEEEECcCCcC-HHHHHHHHhcC---CcCCCHHHHHHhcCHHHHHHHHHHC
Confidence 45566788899993333332210011 4566655443221 11233323332 5778899999999999999988875
Q ss_pred cccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEec--cCccCC--CCCceeEEEeee
Q 024689 127 NLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD--QYSLKK--LEPPLVLQEFVN 202 (264)
Q Consensus 127 ~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~--~~gL~~--L~~P~VlQEFIN 202 (264)
.|.+|++..+++ .+++.+... .+.||+|+||... |+ .+..+.+|.+ ++.|.. +. ++++|+||+
T Consensus 91 -------GIptp~~~~v~~-~~e~~~~~~--~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~vivEe~I~ 157 (355)
T 3eth_A 91 -------HLPTAPWQLLAE-RSEWPAVFD--RLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIVEQGIN 157 (355)
T ss_dssp -------TCCBCCEEEECC-GGGHHHHHH--HHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEEEECCC
T ss_pred -------ccCCCCEEEECC-HHHHHHHHH--HcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEEEEccC
Confidence 467899988853 333333333 3679999999863 22 4688999999 888764 34 799999998
Q ss_pred ccceEEEEEEEC
Q 024689 203 HGGVLFKVYIVG 214 (264)
Q Consensus 203 HggvLfKVYVIG 214 (264)
.+ .=+=|-+++
T Consensus 158 ~~-~Eisv~v~~ 168 (355)
T 3eth_A 158 FS-GEVSLVGAR 168 (355)
T ss_dssp CS-EEEEEEEEE
T ss_pred CC-cEEEEEEEE
Confidence 53 334455553
No 34
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.69 E-value=5.8e-05 Score=71.80 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeecc
Q 024689 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169 (264)
Q Consensus 91 l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlv 169 (264)
+.+..++. .+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .++..+.+. .+.||+|+||..
T Consensus 99 ~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~-~~ea~~~~~--~~g~PvVvKp~~ 167 (442)
T 3lp8_A 99 LSDALTEE-GILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFVD-TNSAYKFID--KHKLPLVVKADG 167 (442)
T ss_dssp HHHHHHHT-TCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEESS-HHHHHHHHH--HSCSSEEEEESS
T ss_pred HHHHHHhc-CCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEECC-HHHHHHHHH--HcCCcEEEeECC
Confidence 33444443 56666 6778888899999888888765 366899988852 222222332 468999999985
Q ss_pred ccCCCCceeEEEEeccCccCC----------C---CCceeEEEeeeccceEEEEEEECc
Q 024689 170 ADGSAKSHELSLAYDQYSLKK----------L---EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 170 A~Gs~~SH~Malvf~~~gL~~----------L---~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.. .+..+.++.+.+.+.. . ..++++||||. |.=|=|.++.|
T Consensus 168 ~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 221 (442)
T 3lp8_A 168 LA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVD 221 (442)
T ss_dssp CC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEE
T ss_pred CC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEEC
Confidence 54 4677888988766531 1 25899999999 56677777754
No 35
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.69 E-value=6.6e-05 Score=68.02 Aligned_cols=125 Identities=15% Similarity=0.183 Sum_probs=87.9
Q ss_pred CCCceEEEeccCc---hHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC
Q 024689 72 QGPFDIVLHKLTG---KEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147 (264)
Q Consensus 72 QgpfDvILHKltd---~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~ 147 (264)
...+|+|+--+.+ +. ..++.+.+.. ++.++ -++.++...+|+..+.+.+++. .+.+|+++.++...
T Consensus 74 ~~~~D~v~~~~hg~~ged--g~i~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~ 143 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGED--GTVQGFLELL-GKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGE 143 (322)
T ss_dssp CTTCSEEEEECCSTTTTS--SHHHHHHHHH-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTS
T ss_pred ccCCCEEEEeCCCCCCcc--HHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECch
Confidence 3468988866543 21 1223333322 46666 4489999999999999998874 36689999886432
Q ss_pred CChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceEEEEEEECce
Q 024689 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 148 ~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
.+ .+ .+.||+|+||....|+ ..+.++.+++.|.. ...++++||||. |..-|-|.|+|+.
T Consensus 144 ~~---~~---~~g~PvvvKP~~g~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 209 (322)
T 2fb9_A 144 PP---VV---PFDPPFFVKPANTGSS---VGISRVERFQDLEAALALAFRYDEKAVVEKALS-PVRELEVGVLGNV 209 (322)
T ss_dssp CC---CC---CSCSCEEEEETTCCTT---TTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS-SCEEEEEEEESSS
T ss_pred hh---hh---ccCCCEEEEeCCCCCC---CCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC-CCeeEEEEEEeCC
Confidence 21 11 6789999999987764 56788888777652 357899999997 2278999999984
No 36
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.69 E-value=0.0003 Score=63.55 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCceEEEeccCch-HHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChh
Q 024689 73 GPFDIVLHKLTGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (264)
Q Consensus 73 gpfDvILHKltd~-~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~ 151 (264)
.++|+++-=.++. ...+.+.+..... ...+.-++++++...|+..+.+.+++ . +.+|+++.
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~~-g~~~g~~~~~~~~~~dK~~~~~~l~~-G-------ip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEKY-CENLGSSSRAIAVTSDKWELYKKLRG-E-------VQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHTT-SEESSCCHHHHHHHTSHHHHHHHHTT-T-------SCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHh-C-------CCCCCEec---------
Confidence 3667644333333 2344444555443 47889999999999999999998775 4 55788763
Q ss_pred HHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCCCCceeEEEeeeccceEEEEEEECc
Q 024689 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 152 ~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+.||+|+||....|+ ..+.++.+ ...++++||||. |.-|=|.++++
T Consensus 130 -----~~~~~P~vvKP~~g~gs---~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g 177 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTACAG---EGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVG 177 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEES
T ss_pred -----ccCCCCEEEEeCCCCCC---CCEEEEec------CCCCEEEEeccC--CcEEEEEEEeC
Confidence 25789999999987765 34445544 467999999999 67888888853
No 37
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.69 E-value=0.00011 Score=68.65 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=90.8
Q ss_pred hhHHhHHHhcCcEEEEecCCCCC--------------CC---------CCCceEEEeccCchHHHHHHHHHHHhCCCeEE
Q 024689 47 PKLEGLARNKGILFVAIDQNRPL--------------SD---------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl--------------~~---------QgpfDvILHKltd~~~~~~l~~y~~~hP~v~V 103 (264)
..+...+++.|+.++.+|.+..- .+ +..+|+|+--.-+.. .+.+ +..++. .+.+
T Consensus 32 ~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~-~~~~-~~l~~~-gi~~ 108 (433)
T 2dwc_A 32 KEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN-LDAL-FEFEKD-GYFV 108 (433)
T ss_dssp HHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC-HHHH-HHHHHT-TCCB
T ss_pred HHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC-HHHH-HHHHhc-CCee
Confidence 34666778899999999876321 00 124555554332111 1222 222232 3445
Q ss_pred eCchhHHhhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 024689 104 LDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (264)
Q Consensus 104 IDP~~ai~~L~nR~~ml~~l-~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv 182 (264)
.-++++++...||..+.+.+ ++. .|.+|++..+++ .+++.+.+. .+.||+|+||.... .+..+.++
T Consensus 109 ~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v 175 (433)
T 2dwc_A 109 VPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATT-LDELYEACE--KIGYPCHTKAIMSS---SGKGSYFV 175 (433)
T ss_dssp SSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEECCC---------EEE
T ss_pred CCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCC-HHHHHHHHH--hcCCCEEEEECCCc---CCCCeEEE
Confidence 66789999999999988887 654 466899988852 222222222 36799999998544 46778899
Q ss_pred eccCccC----CC-------CCceeEEEeeeccceEEEEEEEC
Q 024689 183 YDQYSLK----KL-------EPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 183 f~~~gL~----~L-------~~P~VlQEFINHggvLfKVYVIG 214 (264)
.+++.|. .+ ..++++||||+. |.=|-|.+++
T Consensus 176 ~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 217 (433)
T 2dwc_A 176 KGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVR 217 (433)
T ss_dssp CSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEe
Confidence 9987764 22 468999999985 4556666653
No 38
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.66 E-value=7.8e-05 Score=70.58 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeec
Q 024689 90 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (264)
Q Consensus 90 ~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPl 168 (264)
.+.+..++. .+.++ -+.++++...|+..+.+.+.+. .|.+|++..++. .++..+.+. .+.||+|+||.
T Consensus 82 ~~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIptp~~~~~~~-~~ea~~~~~--~~g~PvVvKp~ 150 (431)
T 3mjf_A 82 GVVDAFRAA-GLAIFGPTQAAAQLEGSKAFTKDFLARH-------NIPSAEYQNFTD-VEAALAYVR--QKGAPIVIKAD 150 (431)
T ss_dssp THHHHHHHT-TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCSBCCEEEESC-HHHHHHHHH--HHCSSEEEEES
T ss_pred HHHHHHHhc-CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEeeCC-HHHHHHHHH--HcCCeEEEEEC
Confidence 344444444 56666 7889999999999999998875 466899988852 222222332 36799999997
Q ss_pred cccCCCCceeEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEECc
Q 024689 169 VADGSAKSHELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 169 vA~Gs~~SH~Malvf~~~gL~~----L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
... .+..+.++.+++.+.. + ..++++||||. |.-|=|.+++|
T Consensus 151 ~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 205 (431)
T 3mjf_A 151 GLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVD 205 (431)
T ss_dssp SSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEE
T ss_pred CCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEc
Confidence 554 4677888988766531 1 35899999999 57777777755
No 39
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.64 E-value=0.00013 Score=74.66 Aligned_cols=153 Identities=13% Similarity=0.136 Sum_probs=104.3
Q ss_pred hhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCC-CeEEeCchhHHhhhcCHHHHHHHHH
Q 024689 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHP-EVTVLDPPYAIQHLHNRQSMLQCVA 124 (264)
Q Consensus 46 ~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP-~v~VIDP~~ai~~L~nR~~ml~~l~ 124 (264)
.+.++..|+++||+++.|+.+.++..-|--|-+ +.+ -| ..+.-++..++...-|+..+.+.+.
T Consensus 435 t~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~-~~i---------------g~~~~t~~~s~~aa~~~~DK~~tk~lL~ 498 (757)
T 3ln7_A 435 TQALLFDVIQKGIHTEILDENDQFLCLKYGDHI-EYV---------------KNGNMTSHDSYISPLIMENKVVTKKVLQ 498 (757)
T ss_dssp HHHHHHHHHHHTCEEEEEETTTTEEEEEETTEE-EEE---------------ETTTBCSSSBSHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCHHHHHhcccccc-eee---------------ccCccCCCCHHHHHHHhcCHHHHHHHHH
Confidence 346778999999999999998887533211111 100 02 2234566777887779999888888
Q ss_pred hccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE----eccCccCC-------CCC
Q 024689 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----YDQYSLKK-------LEP 193 (264)
Q Consensus 125 ~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv----f~~~gL~~-------L~~ 193 (264)
+. .|.+|++.++.. .++..+.+ ...+.||+|+||....| +..|.++ .+.+.|.. ...
T Consensus 499 ~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~g~~---G~GV~iv~~~v~~~eel~~al~~a~~~~~ 566 (757)
T 3ln7_A 499 KA-------GFNVPQSVEFTS-LEKAVASY-ALFENRAVVIKPKSTNY---GLGITIFQQGVQNREDFAKALEIAFREDK 566 (757)
T ss_dssp HH-------TCCCCCEEEESC-HHHHHHGG-GGSSSSCEEEEESSCST---TTTCEECSSCCCCHHHHHHHHHHHHHHCS
T ss_pred HC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCCEEEEeCCCCC---CCCeEEecCCCCCHHHHHHHHHHHHhcCC
Confidence 64 467899998852 11111111 13578999999998766 4567777 66666542 256
Q ss_pred ceeEEEeeeccceEEEEEEECceEEEEEecCCCCC
Q 024689 194 PLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDV 228 (264)
Q Consensus 194 P~VlQEFINHggvLfKVYVIGd~v~vv~R~SLpN~ 228 (264)
++++||||. |.=|-|+|+|+++.-+.+.--+++
T Consensus 567 ~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~V 599 (757)
T 3ln7_A 567 EVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANV 599 (757)
T ss_dssp SEEEEECCC--SEEEEEEEETTEEEEEEEECCSEE
T ss_pred cEEEEEcCC--CcEEEEEEECCEEEEEEEEecccc
Confidence 899999995 689999999999887655544543
No 40
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.57 E-value=0.00052 Score=63.83 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=86.1
Q ss_pred CceEEEeccCchHH-HHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC-Ch
Q 024689 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SI 150 (264)
Q Consensus 74 pfDvILHKltd~~~-~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~-~~ 150 (264)
.+|+|+--+.+..- ...++.+.+.. ++.++ -++.++...+|+..+.+.+++. .+.+|+++.++.... +.
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFY-RIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHT-TCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchHHH
Confidence 45666544433210 01244444444 67766 5689999999999999998875 366899998864321 22
Q ss_pred hHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC-------CCCceeEEEeeeccceE---EEEEEECceE
Q 024689 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVL---FKVYIVGEAI 217 (264)
Q Consensus 151 ~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~-------L~~P~VlQEFINHggvL---fKVYVIGd~v 217 (264)
.+ ...+.||+|+||....|+ -.+.++.+++.|.. ...++++||||.. ..= +-+.| ++.+
T Consensus 179 ~~---~~~lg~PvvVKP~~g~ss---~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~G-~~E~svi~v~v-~g~~ 247 (367)
T 2pvp_A 179 LD---LMNFNFPFIVKPSNAGSS---LGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQG-VKEYNLAGCKI-KKDF 247 (367)
T ss_dssp HH---HCCSCSCEEEEESSCCTT---TTCEEESSTTSHHHHHHHHTTTCSCEEEEECCTT-CEEEEEEEEEE-TTEE
T ss_pred HH---HhccCCCEEEEECCCCCC---CCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCCC-CceeeEEEEEE-CCEE
Confidence 22 356889999999887664 55788999887752 3579999999973 144 66777 7753
No 41
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.57 E-value=0.00011 Score=68.22 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=71.5
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~~---g~G 152 (422)
T 2xcl_A 86 GLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFTS-FDEAKAYVQ--EKGAPIVIKADGLAA---GKG 152 (422)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCGG---GTC
T ss_pred CCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCCC---CCc
Confidence 55566 6788899999999999988875 366899988852 222222232 367999999987654 567
Q ss_pred EEEEeccCccCC----------C---CCceeEEEeeeccceEEEEEEE
Q 024689 179 LSLAYDQYSLKK----------L---EPPLVLQEFVNHGGVLFKVYIV 213 (264)
Q Consensus 179 Malvf~~~gL~~----------L---~~P~VlQEFINHggvLfKVYVI 213 (264)
+.++.+++.|.. . ..++++||||. |.=|-|.++
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~ 198 (422)
T 2xcl_A 153 VTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAF 198 (422)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEE
Confidence 888888766542 1 36899999999 567777777
No 42
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.56 E-value=0.00018 Score=66.93 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=72.3
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~g---g~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFRE-PLEALAYLE--EVGVPVVVKDSGLAA---GKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEECTTSCS---STT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeCC-HHHHHHHHH--HcCCCEEEEECCCCC---CCC
Confidence 45566 7788999999999999988875 366899988752 222222222 367999999987655 566
Q ss_pred EEEEeccCccCC---------CCCceeEEEeeeccceEEEEEEECc
Q 024689 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 179 Malvf~~~gL~~---------L~~P~VlQEFINHggvLfKVYVIGd 215 (264)
+.++.+++.|.. ...++++||||. |.-|-|.+++|
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~ 195 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTD 195 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEe
Confidence 788888766541 236899999998 56788887743
No 43
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.56 E-value=0.00029 Score=66.22 Aligned_cols=138 Identities=13% Similarity=0.233 Sum_probs=88.1
Q ss_pred hhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHH
Q 024689 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (264)
Q Consensus 46 ~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~ 124 (264)
...++.+|++.+++.|-.-... +.+ +..+. +..+++ .+.++ -++++++.+.|+..+.+.++
T Consensus 67 ~~~l~~~~~~~~~d~i~p~~g~-~~e------------~~~~~----~~~~~~-g~~~~g~~~~~~~~~~dK~~~~~~l~ 128 (446)
T 3ouz_A 67 IPAIIAAAEIAEADAIFPGYGF-LSE------------NQNFV----EICAKH-NIKFIGPSVEAMNLMSDKSKAKQVMQ 128 (446)
T ss_dssp HHHHHHHHHHHTCSEEECCSST-TTT------------CHHHH----HHHHHT-TCEESSCCHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCEEEECCcc-ccc------------CHHHH----HHHHHC-CCceECcCHHHHHHhCCHHHHHHHHH
Confidence 3467788888877665322111 111 11222 233333 67776 67999999999999999988
Q ss_pred hccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCCC-----------
Q 024689 125 DMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----------- 191 (264)
Q Consensus 125 ~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L----------- 191 (264)
+. .+.+|++. .++ +.+++.+.. ..+.||+|+||....| +..|.++.+++.|...
T Consensus 129 ~~-------Gip~p~~~~~~~~-~~~e~~~~~--~~~g~PvvvKp~~g~g---g~Gv~~v~~~~el~~~~~~~~~~~~~~ 195 (446)
T 3ouz_A 129 RA-------GVPVIPGSDGALA-GAEAAKKLA--KEIGYPVILKAAAGGG---GRGMRVVENEKDLEKAYWSAESEAMTA 195 (446)
T ss_dssp HT-------TCCBCSBCSSSCC-SHHHHHHHH--HHHCSSEEEEETTCCT---TCSEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred Hc-------CCCcCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHHHHHHh
Confidence 75 35677775 342 222222222 2467999999997654 6678899998887531
Q ss_pred --CCceeEEEeeeccceEEEEEEECc
Q 024689 192 --EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 192 --~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..++++||||... .-|=|.|++|
T Consensus 196 ~~~~~~lvEe~i~g~-~e~~v~v~~d 220 (446)
T 3ouz_A 196 FGDGTMYMEKYIQNP-RHIEVQVIGD 220 (446)
T ss_dssp HSCCCEEEEECCSSC-EEEEEEEEEC
T ss_pred cCCCCEEEEeCCCCC-cEEEEEEEEc
Confidence 5799999999863 3455555543
No 44
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.53 E-value=0.00015 Score=67.37 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=73.4
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvvvKp~~g~g---g~G 152 (424)
T 2yw2_A 86 GLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFTD-FEKAKEYVE--KVGAPIVVKADGLAA---GKG 152 (424)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCCT---TCS
T ss_pred CCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--HcCCcEEEEeCCCCC---CCC
Confidence 56666 6788999999999999988875 366899988752 222222232 367999999987654 567
Q ss_pred EEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEE--CceEE
Q 024689 179 LSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIV--GEAIK 218 (264)
Q Consensus 179 Malvf~~~gL~~----L---------~~P~VlQEFINHggvLfKVYVI--Gd~v~ 218 (264)
+.++.+++.|.. + ..++++||||. |.-|=|.++ |+.++
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~ 205 (424)
T 2yw2_A 153 AVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYV 205 (424)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEE
Confidence 889988776541 1 26899999998 456666666 45444
No 45
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.49 E-value=0.00013 Score=67.21 Aligned_cols=131 Identities=19% Similarity=0.277 Sum_probs=88.8
Q ss_pred CceEEEeccCchHHH-HHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC-CCh
Q 024689 74 PFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSI 150 (264)
Q Consensus 74 pfDvILHKltd~~~~-~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~-~~~ 150 (264)
.+|+++-=+.+..-. ..+|.+.+.. +++.+ =++.++...+||..+-+.+++. .+.+|+++.+.... ...
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFELA-GIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHHC-CCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 456665433332111 1345555544 56555 3467889999999999988874 46789999886322 111
Q ss_pred hHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC-------CCCCceeEEEeeeccceEEEEEEECceEE
Q 024689 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGGVLFKVYIVGEAIK 218 (264)
Q Consensus 151 ~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~-------~L~~P~VlQEFINHggvLfKVYVIGd~v~ 218 (264)
.+.. .+.+.||+|+||....| |..|.+|.+++.|. ....++++|+||+ |.-+=|.|+|+...
T Consensus 169 ~~~~-~~~lg~PvvVKP~~gg~---s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~ 237 (357)
T 4fu0_A 169 MKEI-EANLTYPLFIKPVRAGS---SFGITKVIEKQELDAAIELAFEHDTEVIVEETIN--GFEVGCAVLGIDEL 237 (357)
T ss_dssp HHHH-HHHCCSSEEEEETTCSS---STTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSE
T ss_pred HHHH-HHhcCCCEEEEECCCCC---CCceEEeccHHhHHHHHHHHhccCCeEEEEEecC--CEEEEEEEEecCCc
Confidence 2222 24689999999976443 67899999988885 3367899999995 78888999987643
No 46
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.48 E-value=0.00022 Score=67.27 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=69.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+.++ -++++++...|+..+.+.+++. .|.+|++..++. .+++.+.+. .+.||+|+||....| +..
T Consensus 107 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvVvKp~~~~g---g~G 173 (451)
T 2yrx_A 107 GLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFTS-YEEAKAYIE--QKGAPIVIKADGLAA---GKG 173 (451)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEECC-------CC
T ss_pred CCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCcEEEEeCCCCC---CCc
Confidence 55566 5678888888999888888764 366899988852 222222232 367999999998765 456
Q ss_pred EEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEE--CceEE
Q 024689 179 LSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIV--GEAIK 218 (264)
Q Consensus 179 Malvf~~~gL~~----L---------~~P~VlQEFINHggvLfKVYVI--Gd~v~ 218 (264)
+.++.+++.|.. + ..++++||||. |.=|=|.++ |+.+.
T Consensus 174 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~ 226 (451)
T 2yrx_A 174 VTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVY 226 (451)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEE
T ss_pred EEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEE
Confidence 788888766531 1 36899999999 566777666 44433
No 47
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.42 E-value=0.00014 Score=66.91 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=85.8
Q ss_pred hhHHhHHHhcCcEEEEecCCCCC---------------C---------CCCCceEEEeccCchHHHHHHHHHHHhCCCeE
Q 024689 47 PKLEGLARNKGILFVAIDQNRPL---------------S---------DQGPFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl---------------~---------~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~ 102 (264)
..++..|++.|+..+-+|...+. . .+..+|.|+--..+.. ...+.+..++. .+
T Consensus 20 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~-~~~~a~~~~~~-gl- 96 (403)
T 4dim_A 20 LGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTG-IVSLARICDKE-NL- 96 (403)
T ss_dssp HHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTT-HHHHHHHHHHH-TC-
T ss_pred HHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchh-HHHHHHHHHHc-Cc-
Confidence 34667778889888888752211 0 1234566653222221 11222222222 12
Q ss_pred EeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEE
Q 024689 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (264)
Q Consensus 103 VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malv 182 (264)
+--++++++.+.|+..+.+.+++. .+.+|++..+++ .+++.+.. ..+.||+|+||....| +..|.++
T Consensus 97 ~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~g~g---g~Gv~~v 163 (403)
T 4dim_A 97 VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVRN-ENELKNAL--ENLKLPVIVKATDLQG---SKGIYIA 163 (403)
T ss_dssp SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCCS-HHHHHHHH--HTSCSSEEEECSCC--------CEEE
T ss_pred CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHHHH--hcCCCCEEEEECCCCC---CCCEEEE
Confidence 245788999999999999988875 366899887642 22222222 3678999999998755 5678899
Q ss_pred eccCccCCC---------CCceeEEEeeec
Q 024689 183 YDQYSLKKL---------EPPLVLQEFVNH 203 (264)
Q Consensus 183 f~~~gL~~L---------~~P~VlQEFINH 203 (264)
.+++.|... ..++++||||..
T Consensus 164 ~~~~el~~~~~~~~~~~~~~~~lvEe~i~g 193 (403)
T 4dim_A 164 KKEEEAIDGFNETMNLTKRDYCIVEEFIEG 193 (403)
T ss_dssp SSHHHHHHHHHHHHHHCSSSCCEEEECCCS
T ss_pred CCHHHHHHHHHHHHhcCcCCcEEEEEccCC
Confidence 998877521 468999999984
No 48
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.40 E-value=0.00031 Score=66.19 Aligned_cols=100 Identities=13% Similarity=0.148 Sum_probs=69.4
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccc-eEeeeccccCCCCce
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKSH 177 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fP-lI~KPlvA~Gs~~SH 177 (264)
.+.++ -++++++...|+..+.+.+++. .|.+|++..+++ .+++.+.+. .+.|| +|+||....| +.
T Consensus 112 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvvKp~~~~g---g~ 178 (452)
T 2qk4_A 112 GVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTK-PEEACSFIL--SADFPALVVKASGLAA---GK 178 (452)
T ss_dssp TCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESS-HHHHHHHHH--HCSSCEEEEEESBC------C
T ss_pred CCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hCCCCeEEEEeCCCCC---CC
Confidence 55566 6678888888998888888764 366899988852 222222222 47899 9999977654 56
Q ss_pred eEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEC
Q 024689 178 ELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 178 ~Malvf~~~gL~~----L---------~~P~VlQEFINHggvLfKVYVIG 214 (264)
.+.++.+++.|.. + ..++++||||. |.=|-|.+++
T Consensus 179 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 226 (452)
T 2qk4_A 179 GVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFT 226 (452)
T ss_dssp CEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEE
Confidence 7888888766542 1 36899999999 5778887774
No 49
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.39 E-value=0.0016 Score=62.69 Aligned_cols=124 Identities=13% Similarity=0.161 Sum_probs=82.7
Q ss_pred hhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEeCchhHHhhhcCHHHHHHHHHhc
Q 024689 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADM 126 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l 126 (264)
..++++|++.|++.|-. +++. ....+.+..++. .++ --++++++...|+..+.+.+++.
T Consensus 92 ~~I~~~a~~~~id~Vip------------------~sE~-~l~~~a~~~e~~-Gi~-g~~~~ai~~~~DK~~~k~~l~~~ 150 (474)
T 3vmm_A 92 EQIVKVAEMFGADAITT------------------NNEL-FIAPMAKACERL-GLR-GAGVQAAENARDKNKMRDAFNKA 150 (474)
T ss_dssp HHHHHHHHHTTCSEEEE------------------SCGG-GHHHHHHHHHHT-TCC-CSCHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEE------------------CCcc-cHHHHHHHHHHc-CCC-CCCHHHHHHhhCHHHHHHHHHHc
Confidence 46777888888765432 2222 111222333333 333 67889999999999999998875
Q ss_pred cccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----------------
Q 024689 127 NLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---------------- 190 (264)
Q Consensus 127 ~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~---------------- 190 (264)
.+.+|++..+++ .++..+.. ..+.||+|+||....|+ ..|.++.+++.|..
T Consensus 151 -------GIpvp~~~~v~s-~ee~~~~~--~~lg~PvVVKP~~g~gg---~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~ 217 (474)
T 3vmm_A 151 -------GVKSIKNKRVTT-LEDFRAAL--EEIGTPLILKPTYLASS---IGVTLITDTETAEDEFNRVNDYLKSINVPK 217 (474)
T ss_dssp -------TSCCCCEEEECS-HHHHHHHH--HHSCSSEEEEESSCCTT---TTCEEECCTTSHHHHHHHHHHHHTTSCCCT
T ss_pred -------CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEECCCCcC---ceEEEECCHHHHHHHHHHHHHHHhhccccc
Confidence 466899988753 22222222 35789999999987664 56778999887631
Q ss_pred ---CCCceeEEEeeecc
Q 024689 191 ---LEPPLVLQEFVNHG 204 (264)
Q Consensus 191 ---L~~P~VlQEFINHg 204 (264)
...++++||||...
T Consensus 218 a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 218 AVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp TCCCSCSEEEEECCCBC
T ss_pred cccCCCeEEEEeCCCCc
Confidence 24689999999854
No 50
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.29 E-value=0.00043 Score=72.95 Aligned_cols=153 Identities=16% Similarity=0.249 Sum_probs=98.0
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC---CC---------------------CCceEEEeccCch---HHHHHHHH--HHHhC
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS---DQ---------------------GPFDIVLHKLTGK---EWRQILEE--YRQTH 98 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~---~Q---------------------gpfDvILHKltd~---~~~~~l~~--y~~~h 98 (264)
.+...+++.|+..+.+|.+.... .+ ..+|+|+-=+-+. .....+.+ ..+++
T Consensus 32 ~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~ 111 (1073)
T 1a9x_A 32 QACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF 111 (1073)
T ss_dssp HHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHc
Confidence 46677888999999999764321 00 1334444322211 11111111 22233
Q ss_pred CCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCce
Q 024689 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (264)
Q Consensus 99 P~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH 177 (264)
++.++ -++++++...||..+.+.+.++ .+.+|++..+++ .++..+.. ..+.||+|+||....|+ .
T Consensus 112 -gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~~--~~ig~PvVvKp~~~~Gg---~ 177 (1073)
T 1a9x_A 112 -GVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAVA--ADVGFPCIIRPSFTMGG---S 177 (1073)
T ss_dssp -TCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHHH--HHHCSSEEEEETTCCTT---T
T ss_pred -CCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHH--HHcCCCEEEEECCCCCC---C
Confidence 46666 7789999999999999988875 366899988852 22222222 23679999999998775 4
Q ss_pred eEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEECc
Q 024689 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 178 ~Malvf~~~gL~~L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.+.++.+++.|... ..++++||||.. ..=|=|-|++|
T Consensus 178 Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G-~~E~~v~v~~d 223 (1073)
T 1a9x_A 178 GGGIAYNREEFEEICARGLDLSPTKELLIDESLIG-WKEYEMEVVRD 223 (1073)
T ss_dssp TCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT-SEEEEEEEEEC
T ss_pred ceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CeEEEEEEEEe
Confidence 66789997776422 348999999984 35666777776
No 51
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.27 E-value=0.0005 Score=64.20 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=71.7
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE
Q 024689 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (264)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal 181 (264)
++--++++++...||..+.+.+++. .|.+|++..+++ .++..+.+ ..+.||+|+||....| +..+.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~e~~~~~--~~~g~PvvvKp~~~~g---g~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAET-PEELREKI--KKFSPPYVIKADGLAR---GKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--TTSCSSEEEEESSCCS---SCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCCCCC---CCCEEE
Confidence 4446788999999999999998875 366899988852 22222222 3578999999988765 567889
Q ss_pred EeccCccCC-----------CC--CceeEEEeeeccceEEEEEEECc
Q 024689 182 AYDQYSLKK-----------LE--PPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 182 vf~~~gL~~-----------L~--~P~VlQEFINHggvLfKVYVIGd 215 (264)
+.+++.|.. .. .++++||||. |.=|=|.+++|
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~d 204 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVN 204 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEEC
Confidence 988766532 11 3899999999 67778888743
No 52
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.26 E-value=0.0008 Score=59.67 Aligned_cols=131 Identities=19% Similarity=0.239 Sum_probs=81.3
Q ss_pred hhHHhHHHhcCcEEEEecCCCC--------CCCC---CC-c---------eEEEeccCchHHH-HHHHHHHHhCCCeEEe
Q 024689 47 PKLEGLARNKGILFVAIDQNRP--------LSDQ---GP-F---------DIVLHKLTGKEWR-QILEEYRQTHPEVTVL 104 (264)
Q Consensus 47 ~~l~~~~~~~gi~fv~ID~~~p--------l~~Q---gp-f---------DvILHKltd~~~~-~~l~~y~~~hP~v~VI 104 (264)
..+...+++.|++.+.+|.+.. +.+. .+ + |+|+ ..++... ..++.. + .-.+.++
T Consensus 14 ~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~--~~~e~~~~~~~~~l-e-~~g~~~~ 89 (334)
T 2r85_A 14 LQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVV--PTGSFVAHLGIELV-E-NMKVPYF 89 (334)
T ss_dssp HHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEEC--CCTTHHHHHCHHHH-H-TCCSCBB
T ss_pred HHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEE--ECcchhhhhHHHHH-H-HcCCCcc
Confidence 3567778889999999988742 1111 12 2 5554 1122111 112222 2 3356667
Q ss_pred CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEec
Q 024689 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (264)
Q Consensus 105 DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~ 184 (264)
-++++++...|+..+.+.+++. .+.+|++ ++ +.+ .+.||+|+||....|+ ..+.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~~---------~l~~P~vvKP~~g~~s---~Gv~~v~~ 147 (334)
T 2r85_A 90 GNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DPD---------DIEKPVIVKPHGAKGG---KGYFLAKD 147 (334)
T ss_dssp SCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CGG---------GCCSCEEEEECC-------TTCEEESS
T ss_pred CCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-ChH---------HcCCCEEEEeCCCCCC---CCEEEECC
Confidence 7789999999999999888764 3567887 32 211 2469999999988765 45678888
Q ss_pred cCccCCC----------C--CceeEEEeeec
Q 024689 185 QYSLKKL----------E--PPLVLQEFVNH 203 (264)
Q Consensus 185 ~~gL~~L----------~--~P~VlQEFINH 203 (264)
++.|... . .++++||||.-
T Consensus 148 ~~el~~~~~~~~~~~~~~~~~~~lvee~i~G 178 (334)
T 2r85_A 148 PEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG 178 (334)
T ss_dssp HHHHHHHHHHHHCCCSGGGCCSEEEEECCCC
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEeccCC
Confidence 7766421 2 78999999983
No 53
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.16 E-value=0.0026 Score=67.03 Aligned_cols=102 Identities=21% Similarity=0.425 Sum_probs=63.8
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCcee
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
.+.++ -++++++...||..+.+.++++ .|.+|++..+.+ .++..+.. ..+.||+|+||....| +..
T Consensus 658 Gi~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~s-~eea~~~~--~~ig~PvvVKP~~~~g---G~G 724 (1073)
T 1a9x_A 658 GVPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVTA-IEMAVEKA--KEIGYPLVVRASYVLG---GRA 724 (1073)
T ss_dssp TCCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECCS-HHHHHHHH--HHHCSSEEEEC----------C
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEECC-HHHHHHHH--HHcCCCEEEEECCCCC---CCC
Confidence 45555 5688999999999999988875 356899987742 22222222 2367999999998766 468
Q ss_pred EEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEECc
Q 024689 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 179 Malvf~~~gL~~L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
|.+|.+++.|... ..|+++|+||... .=|=|-+++|
T Consensus 725 v~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-~E~~V~~l~d 769 (1073)
T 1a9x_A 725 MEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-VEVDVDAICD 769 (1073)
T ss_dssp EEEECSHHHHHHHHHHCC--------EEEBCCTTC-EEEEEEEEEC
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-cEEEEEEEEE
Confidence 9999998877521 3599999999854 2444555543
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=97.04 E-value=0.0019 Score=60.82 Aligned_cols=102 Identities=8% Similarity=0.209 Sum_probs=69.7
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
.+.++ -++++++...|+..+.+.+++. .|.+|++. .++ +.++..+.+. .+.||+|+||....| +
T Consensus 104 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 170 (461)
T 2dzd_A 104 GIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFAE--AHGYPIIIKAALGGG---G 170 (461)
T ss_dssp TCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHHH--HHCSCEEEEESTTCS---S
T ss_pred CCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHHH--hcCCcEEEEeCCCCC---C
Confidence 55554 5588999999999999988765 35677775 343 2222222222 367999999998766 4
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+.++.+++.|... ..++++||||.. +.-|-|.+++|
T Consensus 171 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 221 (461)
T 2dzd_A 171 RGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-PKHIEVQILGD 221 (461)
T ss_dssp SSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-CEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-CeEEEEEEEEc
Confidence 567889988776421 468999999985 34456666654
No 55
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.93 E-value=0.0051 Score=61.25 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=89.5
Q ss_pred chhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHH
Q 024689 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (264)
Q Consensus 45 ~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l 123 (264)
....++++|++.|++.|-.-... +++.. .+.+..++. .+.++ -++++++.+.|+..+.+.+
T Consensus 127 d~~~Il~~a~~~~vdaV~pG~Gf-lsEn~----------------~~a~~le~~-Gi~~iGp~~~ai~~~~DK~~ak~ll 188 (587)
T 3jrx_A 127 NVELIVDIAKRIPVQAVWAGWGH-ASENP----------------KLPELLCKN-GVAFLGPPSEAMWALGDKIASTVVA 188 (587)
T ss_dssp CHHHHHHHHHHTTCSEEECCSST-TTTCT----------------HHHHHHHTT-TCEESSCCHHHHHHHCSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEeCCCc-cccCH----------------HHHHHHHHC-CCCeeCCCHHHHHHhCCHHHHHHHH
Confidence 34567888888888765321111 12211 122333343 78887 7888999999999999998
Q ss_pred HhccccCCCCcccCCceEE----Ec---------------------cCCCChhHHHH-hcCCccceEeeeccccCCCCce
Q 024689 124 ADMNLSNSYGKVDVPRQLV----IE---------------------RDASSIPDVVL-KAGLTLPLVAKPLVADGSAKSH 177 (264)
Q Consensus 124 ~~l~~~~~~~~i~vP~~v~----i~---------------------~~~~~~~~~l~-~agL~fPlI~KPlvA~Gs~~SH 177 (264)
++.. |.+|++.. ++ ....+..+... ...+.||+|+||....| +.
T Consensus 189 ~~aG-------VPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgG---Gk 258 (587)
T 3jrx_A 189 QTLQ-------VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGG---GK 258 (587)
T ss_dssp HHTT-------CCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCS---SS
T ss_pred HHcC-------CCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCC---CC
Confidence 8754 33454432 00 00111111111 23478999999988766 56
Q ss_pred eEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEECc
Q 024689 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 178 ~Malvf~~~gL~~L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.|.+|.+++.|... ..++++|+||.. +.=|=|-|+||
T Consensus 259 Gv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g-~rei~V~vl~D 304 (587)
T 3jrx_A 259 GIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILAD 304 (587)
T ss_dssp SEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEEC
T ss_pred CeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 79999998887522 579999999975 35666777766
No 56
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.90 E-value=0.0011 Score=62.00 Aligned_cols=101 Identities=8% Similarity=0.169 Sum_probs=68.9
Q ss_pred CeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCh-hHHHHhcCCccceEeeeccccCCCC
Q 024689 100 EVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKPLVADGSAK 175 (264)
Q Consensus 100 ~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~-~~~l~~agL~fPlI~KPlvA~Gs~~ 175 (264)
.+.++= ++++++...|+..+.+.+.+.. |.+|++. .++ +.++. .+.+. .+.||+|+||....|+
T Consensus 99 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~~--~~g~PvvvKp~~g~gg-- 166 (449)
T 2w70_A 99 GFIFIGPKAETIRLMGDKVSAIAAMKKAG-------VPCVPGSDGPLG-DDMDKNRAIAK--RIGYPVIIKASGGGGG-- 166 (449)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHHT-------CCBCSBCSSCCC-SCHHHHHHHHH--HHCSSEEEEETTCCTT--
T ss_pred CCceECCCHHHHHHhcCHHHHHHHHHHcC-------CCcCCCcccccC-CHHHHHHHHHH--HhCCcEEEEECCCCCC--
Confidence 566554 5889999999999999888753 5577775 443 22333 22232 3679999999987664
Q ss_pred ceeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEEC
Q 024689 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 176 SH~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIG 214 (264)
..+.++.+++.|... ..++++||||.. +.=|-|.+++
T Consensus 167 -~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~~~~ 216 (449)
T 2w70_A 167 -RGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLA 216 (449)
T ss_dssp -TTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEE
T ss_pred -CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-CeEEEEEEEE
Confidence 567788887766421 469999999975 3445566664
No 57
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.66 E-value=0.001 Score=62.38 Aligned_cols=102 Identities=14% Similarity=0.254 Sum_probs=69.0
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
.+.++ -++++++...|+..+.+.+++. .|.+|++. .++ +.++..+.+. .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 1ulz_A 98 GITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALAR--EIGYPVLLKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHHH--HHCSSEEEEECSSSS---C
T ss_pred CCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHHH--HcCCCEEEEECCCCC---C
Confidence 56655 5588899999999999988775 35577775 443 2222222222 367999999998766 4
Q ss_pred eeEEEEeccCccCC------------C-CCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~------------L-~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+.++.+++.|.. + ..++++||||..+ .=|-|.+++|
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~~ 215 (451)
T 1ulz_A 165 RGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-KHIEYQVLGD 215 (451)
T ss_dssp CSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-EEEEEEEEEC
T ss_pred ccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-eEEEEEEEEc
Confidence 56778888766642 1 4689999999853 4556666653
No 58
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=96.54 E-value=0.0022 Score=60.05 Aligned_cols=101 Identities=18% Similarity=0.285 Sum_probs=68.3
Q ss_pred CeEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
.+.++- ++++++...|+..+.+.+++.. |.+|++. .++ +.+++.+.+. .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~g-------ip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 2vpq_A 98 QLKFIGPSYQSIQKMGIKDVAKAEMIKAN-------VPVVPGSDGLMK-DVSEAKKIAK--KIGYPVIIKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHTT-------CCBCSBCSSCBS-CHHHHHHHHH--HHCSSEEEEETTCCT---T
T ss_pred CCeEECCCHHHHHHhcCHHHHHHHHHHcC-------CCcCCCcccCcC-CHHHHHHHHH--hcCCcEEEEECCCCC---C
Confidence 666665 4889999999999999888753 5566654 443 2222222222 367999999988765 5
Q ss_pred eeEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEC
Q 024689 177 HELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVG 214 (264)
Q Consensus 177 H~Malvf~~~gL~~----L---------~~P~VlQEFINHggvLfKVYVIG 214 (264)
..+.++.+++.|.. + ..++++||||... .=|-|.+++
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~ 214 (451)
T 2vpq_A 165 KGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-RHIEIQIVG 214 (451)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-EEEEEEEEE
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-eEEEEEEEE
Confidence 67788888766542 1 4789999999853 345555554
No 59
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.54 E-value=0.0036 Score=61.49 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=66.6
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEE----Ecc---------------------CCCChhHH
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV----IER---------------------DASSIPDV 153 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~----i~~---------------------~~~~~~~~ 153 (264)
.+.++ -++++++.+.|+..+.+.+++.. |.+|++.. ++. ...+..+.
T Consensus 148 Gi~~iGp~~~ai~~~~DK~~~k~ll~~~G-------VPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea 220 (540)
T 3glk_A 148 GVAFLGPPSEAMWALGDKIASTVVAQTLQ-------VPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 220 (540)
T ss_dssp TCEESSCCHHHHC---CHHHHHHHHHHTT-------CCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHH
T ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHHcC-------CCCCCcccccccccccccccccccccccccccccccCcCCHHHH
Confidence 67887 78889999999999999888753 44555543 000 01111111
Q ss_pred HH-hcCCccceEeeeccccCCCCceeEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEECc
Q 024689 154 VL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 154 l~-~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.. ...+.||+|+||....| +..|.+|.+++.|... ..++++|+||.. +.=|=|-|+||
T Consensus 221 ~~~a~~igyPvVVKp~~ggG---G~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g-~rei~V~vl~d 288 (540)
T 3glk_A 221 LEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILAD 288 (540)
T ss_dssp HHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS-EEEEEEEEEEC
T ss_pred HHHHHhcCCcEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 11 13478999999988665 5689999998887522 568999999964 45666777765
No 60
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.53 E-value=0.0024 Score=59.01 Aligned_cols=131 Identities=9% Similarity=0.058 Sum_probs=74.9
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC---CCCCce--EEEeccC------ch-----HHHHH--HHHHHHhCCCeEEeCchhH
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS---DQGPFD--IVLHKLT------GK-----EWRQI--LEEYRQTHPEVTVLDPPYA 109 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~---~QgpfD--vILHKlt------d~-----~~~~~--l~~y~~~hP~v~VIDP~~a 109 (264)
.+...|++.|+.++-+|.+.+-. -..-.| +++.+.+ |. ++... ++.. + .-.+.+..+.++
T Consensus 15 ~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe~e~v~~~~l~~l-e-~~~~p~~p~~~~ 92 (320)
T 2pbz_A 15 QILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAI-E-KAKARFFGNRRF 92 (320)
T ss_dssp HHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCBTTHHHHSCHHHH-H-TCCSCCBSCSSG
T ss_pred HHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEecccchhHHHHHHH-H-HcCCCcCCCHHH
Confidence 45667889999999999874321 111112 1112111 11 22221 2222 2 335678888999
Q ss_pred HhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccC
Q 024689 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (264)
Q Consensus 110 i~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~ 189 (264)
++...||...-+.++++ .|.+|++.. .+++ .+.||+|+||..+.| ++...++.+ +.|.
T Consensus 93 l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g~g---gkG~~~v~~-eel~ 150 (320)
T 2pbz_A 93 LKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGPRG---GSGHFIVEG-SELE 150 (320)
T ss_dssp GGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-EECS
T ss_pred HHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCCCC---CCCEEEECh-HHHH
Confidence 99999998776777765 356788762 2222 488999999998764 788999999 8886
Q ss_pred CC----CCceeEEEeee
Q 024689 190 KL----EPPLVLQEFVN 202 (264)
Q Consensus 190 ~L----~~P~VlQEFIN 202 (264)
.. ..++++||||+
T Consensus 151 ~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 151 ERLSTLEEPYRVERFIP 167 (320)
T ss_dssp CCCC----CCEEEECCC
T ss_pred HHHHhcCCCEEEEeeec
Confidence 43 25899999998
No 61
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=96.45 E-value=0.0015 Score=63.63 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=66.7
Q ss_pred eEEeC-chhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEE-----ccC-----------------CCChhHHHH-h
Q 024689 101 VTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-----ERD-----------------ASSIPDVVL-K 156 (264)
Q Consensus 101 v~VID-P~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i-----~~~-----------------~~~~~~~l~-~ 156 (264)
+.++= ++++++.+.|+..+.+.+++.. |.+|++..+ ..+ ..+..+.+. .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~G-------Ip~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSAK-------VPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHTT-------CCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHCC-------CCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 54443 4668999999999999888754 445555332 000 011111111 1
Q ss_pred cCCccceEeeeccccCCCCceeEEEEeccCccCCC---------CCceeEEEeeeccceEEEEEEECc
Q 024689 157 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 157 agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~L---------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..+.||+|+||....| +..|.++.+++.|... ..++++||||.. +.=|=|.+++|
T Consensus 231 ~~~g~PvVvKp~~g~g---g~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-~~e~sv~vl~d 294 (554)
T 1w96_A 231 KRIGFPVMIKASEGGG---GKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-ARHLEVQLLAD 294 (554)
T ss_dssp HHHCSSEEEEETTCCT---TTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEEC
T ss_pred HHcCCCEEEEECCCCC---CceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEc
Confidence 2467999999998776 4577889887776421 468999999984 34556666654
No 62
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=6.8e-05 Score=56.29 Aligned_cols=65 Identities=17% Similarity=0.425 Sum_probs=42.3
Q ss_pred cccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC------------C-CCceeEE
Q 024689 134 KVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------------L-EPPLVLQ 198 (264)
Q Consensus 134 ~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~------------L-~~P~VlQ 198 (264)
.|.+|+++ .+. +.++..+.. ..+.||+|+||....|+ ..+.++.+++.|.. . ..++++|
T Consensus 20 gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~~~---~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve 93 (108)
T 2cqy_A 20 EVNTIPGFDGVVK-DAEEAVRIA--REIGYPVMIKASAGGGG---KGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIE 93 (108)
T ss_dssp CCCCCSCCCSCBS-SHHHHHHHH--HHHCSSEEEEETTSCCT---TTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred CCCCCCCcccccC-CHHHHHHHH--HhcCCCEEEEECCCCCC---ccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 47788876 553 222222222 24689999999976554 46777888766642 1 4689999
Q ss_pred Eeeecc
Q 024689 199 EFVNHG 204 (264)
Q Consensus 199 EFINHg 204 (264)
|||...
T Consensus 94 e~i~g~ 99 (108)
T 2cqy_A 94 KFIDNP 99 (108)
T ss_dssp ECCSSS
T ss_pred eccCCC
Confidence 999753
No 63
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=96.36 E-value=0.0041 Score=62.71 Aligned_cols=108 Identities=15% Similarity=0.295 Sum_probs=39.0
Q ss_pred HHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeecc
Q 024689 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 169 (264)
Q Consensus 93 ~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlv 169 (264)
+..+++ .+.++ -++++++.+.|+..+.+.+.+. .|.+|+++ .+. +.++..+.. ..+.||+|+||..
T Consensus 93 ~~le~~-Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~a--~~igyPvVvKp~~ 161 (681)
T 3n6r_A 93 EALEAE-GVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKIS--NQIGYPVMIKASA 161 (681)
T ss_dssp HHHHTT-TCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC-------------------------------
T ss_pred HHHHHc-CCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHHH--HhcCCcEEEEECC
Confidence 334444 66666 6789999999999999988764 35567764 333 223322222 3578999999997
Q ss_pred ccCCCCceeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 170 A~Gs~~SH~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..| +..|.++.+++.|... ..++++|+||... .=|=|-|++|
T Consensus 162 ggg---gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-rei~V~v~~d 216 (681)
T 3n6r_A 162 GGG---GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-RHIEIQVLCD 216 (681)
T ss_dssp --------------------------------------------CCSC-EEEEEEEECC
T ss_pred CCC---CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-cEEEEEEEEe
Confidence 655 6778999998887532 3489999999863 5666777765
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=96.35 E-value=0.012 Score=62.69 Aligned_cols=138 Identities=9% Similarity=0.173 Sum_probs=83.2
Q ss_pred hhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHH
Q 024689 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVA 124 (264)
Q Consensus 46 ~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~ 124 (264)
...++++|++.|++.|-.-... +++ +. .+.+..+++ .+.++ -++++++.+.|+..+.+.+.
T Consensus 66 ~~~Ii~~a~~~~~DaI~pg~gf-lsE------------~~----~~a~~le~~-Gi~~iGp~~eai~~~~DK~~~r~ll~ 127 (1150)
T 3hbl_A 66 IERIIDVAKQANVDAIHPGYGF-LSE------------NE----QFARRCAEE-GIKFIGPHLEHLDMFGDKVKARTTAI 127 (1150)
T ss_dssp HHHHHHHHHHTTCSEEECTTTT-STT------------CH----HHHHHHHHT-TCEESSSCHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCc-ccc------------cH----HHHHHHHHC-CCCeeCCCHHHHHHhCCHHHHHHHHH
Confidence 4567788888887765422111 111 11 222333344 67776 67899999999999999988
Q ss_pred hccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEEEeccCccCC----C-------
Q 024689 125 DMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L------- 191 (264)
Q Consensus 125 ~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Malvf~~~gL~~----L------- 191 (264)
+. .|.+|++. .+. +.++..+.. ..+.||+|+||....| +..|.++.+++.|.. +
T Consensus 128 ~a-------GIPvpp~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---g~Gv~vv~s~eeL~~a~~~a~~~a~~~ 194 (1150)
T 3hbl_A 128 KA-------DLPVIPGTDGPIK-SYELAKEFA--EEAGFPLMIKATSGGG---GKGMRIVREESELEDAFHRAKSEAEKS 194 (1150)
T ss_dssp HT-------TCCBCCBCSSCBC-SSSTTTTTG--GGTCSSEEEECCC----------CEECCSSSCTHHHHSSSSSCC--
T ss_pred Hc-------CcCCCCccccCCC-CHHHHHHHH--HHcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHHHHHhh
Confidence 75 35577776 343 222222222 3578999999997765 677899999888752 1
Q ss_pred --CCceeEEEeeeccceEEEEEEECc
Q 024689 192 --EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 192 --~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..++++|+||... .=|=|-|+||
T Consensus 195 fg~~~vlVEeyI~G~-reieV~vl~d 219 (1150)
T 3hbl_A 195 FGNSEVYIERYIDNP-KHIEVQVIGD 219 (1150)
T ss_dssp ----CBEEECCCSSC-EEEEEEEEEC
T ss_pred cCCCcEEEEEccCCC-cEEEEEEEEe
Confidence 3689999999753 4455556654
No 65
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=96.27 E-value=0.0083 Score=60.43 Aligned_cols=110 Identities=10% Similarity=0.193 Sum_probs=69.1
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCChhHHHHhcCCccceEeeeccccCCCCce
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i-~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH 177 (264)
.+.++ -++++++.+.|+..+.+.+.+. .|.+|+++.. -.+.+++.+... .+.||+|+||....| +.
T Consensus 125 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~~a~--~igyPvvvKp~~G~G---g~ 192 (675)
T 3u9t_A 125 GLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRREAG--RIGYPVLLKAAAGGG---GK 192 (675)
T ss_dssp TCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHHHHH--HSCSSBCCBCCC--------
T ss_pred CCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHHHHH--hCCCcEEEEECCCCC---Cc
Confidence 45555 6789999999999999988875 3556766542 123333333333 467999999998765 56
Q ss_pred eEEEEeccCccCC----C---------CCceeEEEeeeccceEEEEEEEC----ceEEEEEe
Q 024689 178 ELSLAYDQYSLKK----L---------EPPLVLQEFVNHGGVLFKVYIVG----EAIKVVRR 222 (264)
Q Consensus 178 ~Malvf~~~gL~~----L---------~~P~VlQEFINHggvLfKVYVIG----d~v~vv~R 222 (264)
.|.++.+++.|.. + ..++++|+||... .=|=|-|++ ..+.+..|
T Consensus 193 Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-reiev~v~~d~~G~vv~l~~r 253 (675)
T 3u9t_A 193 GMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-RHVEIQVFADRHGHCLYLNER 253 (675)
T ss_dssp -CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-BCEEEEEEECSSSCEEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-cEEEEEEEEcCCCCEEEEecc
Confidence 7889999887742 1 3589999999864 333444444 34555444
No 66
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=95.73 E-value=0.013 Score=62.96 Aligned_cols=108 Identities=17% Similarity=0.291 Sum_probs=35.0
Q ss_pred HHHHhCCCeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCc-eEEEccCCCChhHHHHhcCCccceEeeeccc
Q 024689 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVA 170 (264)
Q Consensus 93 ~y~~~hP~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~-~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA 170 (264)
+..++. .+.++ -++++++.+.|+..+.+.+++.. |.+|+ +..++ +.++..+.. ..+.||+|+||...
T Consensus 122 ~~le~~-Gi~~iGps~eai~~~~DK~~ak~ll~~aG-------IPvpp~~~~v~-s~eea~~~a--~~iGyPvVVKP~~G 190 (1236)
T 3va7_A 122 DRCSQE-NIVFVGPSGDAIRKLGLKHSAREIAERAK-------VPLVPGSGLIK-DAKEAKEVA--KKLEYPVMVKSTAG 190 (1236)
T ss_dssp HHHHTT-TCEESSCCHHHHHHHHSTTHHHHHHHHTT-------CCCCC--------------------------------
T ss_pred HHHHHC-CCCeeCCCHHHHHHhcCHHHHHHHHHHcC-------CCCCCeeEecC-CHHHHHHHH--HHcCCCEEEEeCCC
Confidence 333343 67765 77889999999999999888753 55655 44443 223322222 35789999999766
Q ss_pred cCCCCceeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 171 DGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 171 ~Gs~~SH~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
.| +..|.++.+++.|... ..++++||||.. +.=|=|.|++|
T Consensus 191 gG---GkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~D 244 (1236)
T 3va7_A 191 GG---GIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGD 244 (1236)
T ss_dssp ---------------------------------------------C-CEEEEEEEEEE
T ss_pred CC---CCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEec
Confidence 55 6678899998877521 357999999986 45555666665
No 67
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=95.31 E-value=0.029 Score=59.96 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=36.2
Q ss_pred CeEEe-CchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCChhHHHHhcCCccceEeeeccccCCCCc
Q 024689 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (264)
Q Consensus 100 ~v~VI-DP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~S 176 (264)
.+.++ -++++++.+.|+..+.+.+.+. .|.+|++. .++ +.+++.+.. ..+.||+|+||....| +
T Consensus 118 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~a--~~igyPvVVKp~~g~G---G 184 (1165)
T 2qf7_A 118 GIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKMA--AAIGYPVMLKASWGGG---G 184 (1165)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC----------------------------------------
T ss_pred CCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHHH--HhcCCCEEEEeCCCCC---C
Confidence 56665 4588999999999999988775 35678776 443 222222222 3578999999998766 4
Q ss_pred eeEEEEeccCccCCC-------------CCceeEEEeeeccceEEEEEEECc
Q 024689 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 215 (264)
Q Consensus 177 H~Malvf~~~gL~~L-------------~~P~VlQEFINHggvLfKVYVIGd 215 (264)
..|.++.+++.|... ..++++|+||.. |.=|=|.+++|
T Consensus 185 ~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-g~EisV~vl~D 235 (1165)
T 2qf7_A 185 RGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-ARHVESQILGD 235 (1165)
T ss_dssp -----------------------------------CCCSS-EEEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-CcEEEEEEEEc
Confidence 568999998777521 358999999985 45566777766
No 68
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=93.33 E-value=0.041 Score=47.57 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=57.6
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeecccc--CCCCceeEEE-EeccCccC
Q 024689 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLK 189 (264)
Q Consensus 113 L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~--Gs~~SH~Mal-vf~~~gL~ 189 (264)
.+|...+.+.+.+. .|.+|++.++++ .++..+.. ..+.||+|+||...+ |..++-...+ +.+++.|.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~-~~ea~~~a--~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKT-LDEALEYA--KEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESS-HHHHHHHH--HHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHHH--HHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 46777777777653 477899988852 22222111 246899999998751 1123444555 67776664
Q ss_pred CC----------------CCceeEEEeeeccceEEEEEEECce
Q 024689 190 KL----------------EPPLVLQEFVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 190 ~L----------------~~P~VlQEFINHggvLfKVYVIGd~ 216 (264)
.. ..++++|+||.++ .=|=|-+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g-~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPG-REVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCC-EEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCC-eEEEEEEEeCC
Confidence 21 2579999999964 44445556654
No 69
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=92.60 E-value=0.21 Score=46.48 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=73.6
Q ss_pred hHHhHHHhcCcEEEEecCCCCCC---CCCCceEEE-ec-cCc---hHHHHHHHH-------------HH-----HhCCCe
Q 024689 48 KLEGLARNKGILFVAIDQNRPLS---DQGPFDIVL-HK-LTG---KEWRQILEE-------------YR-----QTHPEV 101 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~---~QgpfDvIL-HK-ltd---~~~~~~l~~-------------y~-----~~hP~v 101 (264)
.+...|++.|+.++.+|.+.+-. .....|-++ -- ..| ....+.+.+ |. .+.-.+
T Consensus 31 ~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l~~~~g~ 110 (361)
T 2r7k_A 31 HILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSFLV 110 (361)
T ss_dssp HHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHHHHTCCS
T ss_pred HHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHHHHHcCC
Confidence 36678899999999999885421 122334332 22 334 222222111 11 111233
Q ss_pred EEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCCCCceeEEE
Q 024689 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (264)
Q Consensus 102 ~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs~~SH~Mal 181 (264)
.+.-+..+++.-.+|...-+.+++. .|.+|++ ++ +.++ +.||+|+||.-+. .++...+
T Consensus 111 ~v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~~e---------~~~PvVVK~~~~a---~GkGv~v 168 (361)
T 2r7k_A 111 PMFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SPED---------IDGTVIVKFPGAR---GGRGYFI 168 (361)
T ss_dssp CBBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SGGG---------CCSCEEEECSCCC---C---EEE
T ss_pred CcCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CHHH---------cCCCEEEeeCCCC---CCCCEEE
Confidence 3444444455556665544555553 3667765 32 2111 2599999998765 4788899
Q ss_pred EeccCccCC----C--------C--CceeEEEeee
Q 024689 182 AYDQYSLKK----L--------E--PPLVLQEFVN 202 (264)
Q Consensus 182 vf~~~gL~~----L--------~--~P~VlQEFIN 202 (264)
+.+.+.+.. + . .++|+||||+
T Consensus 169 ~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 169 ASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp ESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred ECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 988766532 1 2 4799999998
No 70
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=83.74 E-value=0.61 Score=44.04 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=49.6
Q ss_pred cccCCceEEEccCCCChhHHHHhcCCccceEeeeccc-cCCCCceeEEEEeccCccCC-----C--------CCceeEEE
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKK-----L--------EPPLVLQE 199 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA-~Gs~~SH~Malvf~~~gL~~-----L--------~~P~VlQE 199 (264)
.|.+|++.++.+ .++..+...+ +.||+++||... -|..++.-+.++.+++.+.. + -..+++||
T Consensus 16 GIpvp~~~~~~s-~eea~~aa~~--lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe 92 (397)
T 3ufx_B 16 GVPVPPGKVAYT-PEEAKRIAEE--FGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAE 92 (397)
T ss_dssp TCCCCCEEEESS-HHHHHHHHHH--HTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEE
T ss_pred CCCCCCeEEECC-HHHHHHHHHH--cCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEE
Confidence 578999998853 2222222223 459999999872 24446678888877655531 1 24799999
Q ss_pred eeeccceEEEEEEECce
Q 024689 200 FVNHGGVLFKVYIVGEA 216 (264)
Q Consensus 200 FINHggvLfKVYVIGd~ 216 (264)
|++++--+ =|-++.|.
T Consensus 93 ~v~~g~El-~vgv~~D~ 108 (397)
T 3ufx_B 93 AVDIAKEY-YAGLILDR 108 (397)
T ss_dssp CCCEEEEE-EEEEEEET
T ss_pred eecCCeeE-EEEEEecC
Confidence 99875333 34444553
No 71
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=79.17 E-value=1.8 Score=40.57 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=50.6
Q ss_pred cccCCceEEEccCCCChhHHHHhcCCccc-eEeeecccc-CCCCceeEEEEeccCccCC---------C-----------
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVAD-GSAKSHELSLAYDQYSLKK---------L----------- 191 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL~fP-lI~KPlvA~-Gs~~SH~Malvf~~~gL~~---------L----------- 191 (264)
.|.+|++.++.+ .++..+.. ..+.|| +++||.... |..++.-+.++.+.+.+.. +
T Consensus 16 GIpvp~~~~~~s-~eea~~aa--~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~ 92 (388)
T 2nu8_B 16 GLPAPVGYACTT-PREAEEAA--SKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQP 92 (388)
T ss_dssp TCCCCCEEEESS-HHHHHHHH--HHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEE
T ss_pred CcCCCCeeEECC-HHHHHHHH--HHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcc
Confidence 477899998853 22222222 236799 999998743 3347788888887655421 0
Q ss_pred CCceeEEEeeeccceEEEEEEECceE
Q 024689 192 EPPLVLQEFVNHGGVLFKVYIVGEAI 217 (264)
Q Consensus 192 ~~P~VlQEFINHggvLfKVYVIGd~v 217 (264)
..++++|+|++|+--+ =|-++.|..
T Consensus 93 ~~~vlVEe~v~~~~E~-~v~v~~D~~ 117 (388)
T 2nu8_B 93 VNQILVEAATDIAKEL-YLGAVVDRS 117 (388)
T ss_dssp CCCEEEEECCCEEEEE-EEEEEEETT
T ss_pred cceEEEEEccccCCcE-EEEEEEecc
Confidence 1369999999975333 345555543
No 72
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=76.52 E-value=41 Score=33.56 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=90.2
Q ss_pred hHHhHHHhcCcEEEEec-CCCC-CCCCC--------CceEEEeccCchHHH-HHHH---------------------HHH
Q 024689 48 KLEGLARNKGILFVAID-QNRP-LSDQG--------PFDIVLHKLTGKEWR-QILE---------------------EYR 95 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID-~~~p-l~~Qg--------pfDvILHKltd~~~~-~~l~---------------------~y~ 95 (264)
-|.+.|++.|++...+| ++.= +.+.| ++|+|. |+.--+|. ..+. ++.
T Consensus 398 ~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~~~~~~~~~g~~~~g~~ll 476 (619)
T 2io8_A 398 FMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLI 476 (619)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---CCSSCCCCSCCSSCCCCHH
T ss_pred HHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccccccccccccCccchHHHH
Confidence 46688999999999997 5431 12222 555554 36544443 2221 233
Q ss_pred H--hCCCeEEeCchhHHhhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCChhHHHHhcCCccceEeeeccccCC
Q 024689 96 Q--THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS 173 (264)
Q Consensus 96 ~--~hP~v~VIDP~~ai~~L~nR~~ml~~l~~l~~~~~~~~i~vP~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gs 173 (264)
+ ....+.+|.|+.++- +.|+.. +..|-++.... .-.-|.+ ++ ... .+... .+|.||+..-+.
T Consensus 477 ~~l~~~~v~iieP~~~~l-lsNKai-lalLw~l~p~h---p~LLpT~--f~--~~~---~l~~~----~yV~KPi~gReG 540 (619)
T 2io8_A 477 DVLLRPEVLVFEPLWTVI-PGNKAI-LPILWSLFPHH---RYLLDTD--FT--VND---ELVKT----GYAVKPIAGRCG 540 (619)
T ss_dssp HHHTCTTCEEESCGGGGT-TTSTTH-HHHHHHHSTTC---TTCCCEE--SS--CCH---HHHHH----CEEEEETTCCTT
T ss_pred HHHHhCCCEEECHHHHHH-hhhHHH-HHHHHHhCCCC---CCCCCee--ec--CCc---ccccC----CEEEccCCCCCC
Confidence 2 356899999999876 788653 33333332111 1112333 11 111 12222 499999997655
Q ss_pred CCceeEEEEec-cCccCC-----CCCceeEEEeeecc-----ceEEEEEEECceEE-EEEecC
Q 024689 174 AKSHELSLAYD-QYSLKK-----LEPPLVLQEFVNHG-----GVLFKVYIVGEAIK-VVRRFS 224 (264)
Q Consensus 174 ~~SH~Malvf~-~~gL~~-----L~~P~VlQEFINHg-----gvLfKVYVIGd~v~-vv~R~S 224 (264)
+ .|.|+-+ .+-+.+ -+.++|.|+|+.-- -.++=+|+||++.. +..|-|
T Consensus 541 ~---nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 541 S---NIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp T---TCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred C---CEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 4 4777654 221211 13589999999853 45577899999654 667765
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=66.40 E-value=3.8 Score=38.57 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=55.0
Q ss_pred cccCCceEEEccCCCChhHHHHhcCCcc-ceEeeeccccCCC-Cc-------eeEEEEeccCccC----CC---------
Q 024689 134 KVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSA-KS-------HELSLAYDQYSLK----KL--------- 191 (264)
Q Consensus 134 ~i~vP~~v~i~~~~~~~~~~l~~agL~f-PlI~KPlvA~Gs~-~S-------H~Malvf~~~gL~----~L--------- 191 (264)
.|.+|++.++.+ .++..+.. ..+.| |+++||.+.+|.. +. --+.++.+.+.+. .+
T Consensus 16 GIpvp~~~~~~s-~~ea~~~a--~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q 92 (395)
T 2fp4_B 16 GVKVQRFFVADT-ANEALEAA--KRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQ 92 (395)
T ss_dssp TCCCCCEEEESS-HHHHHHHH--HHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTT
T ss_pred CcCCCCeEEECC-HHHHHHHH--HHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhc
Confidence 578899988853 22222222 23678 8999999777642 11 3377777655442 11
Q ss_pred -------CCceeEEEeeeccceEEEEEEECceE--EEEEecC-CCCCCcccc
Q 024689 192 -------EPPLVLQEFVNHGGVLFKVYIVGEAI--KVVRRFS-LPDVTKQDL 233 (264)
Q Consensus 192 -------~~P~VlQEFINHggvLfKVYVIGd~v--~vv~R~S-LpN~~~~~~ 233 (264)
-..+++|+|++++-- |=|-++.|.. ..+.-.| ...+..+++
T Consensus 93 ~g~~g~~~~~vlVEe~v~~~~E-~~v~i~~D~~~~~pvi~~s~~GG~~iE~v 143 (395)
T 2fp4_B 93 TPKEGVKVNKVMVAEALDISRE-TYLAILMDRSCNGPVLVGSPQGGVDIEEV 143 (395)
T ss_dssp SCTTCEECCCEEEEECCCCSEE-EEEEEEEETTTTEEEEEEESSCSSCHHHH
T ss_pred cCCCCCccceEEEEEccCCcee-EEEEEEEccccCceEEEEECCCCccceec
Confidence 125899999997633 3345555543 1333444 555554443
No 74
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=46.32 E-value=8.7 Score=36.24 Aligned_cols=148 Identities=11% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCchHHHHHHHHHHH--hCCC-eEEeCchhHHhhhcCHHHHHHHHHh
Q 024689 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ--THPE-VTVLDPPYAIQHLHNRQSMLQCVAD 125 (264)
Q Consensus 49 l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~~~~~~l~~y~~--~hP~-v~VIDP~~ai~~L~nR~~ml~~l~~ 125 (264)
+..+.+++|. +..++.+ -..+|++...-... -|.. .+|. .-.|.=+.....|.....|.+.+..
T Consensus 20 V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~-------p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~ 86 (380)
T 3tig_A 20 VAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRL-------PFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKT 86 (380)
T ss_dssp HHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSC-------CGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHH
T ss_pred HHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCC-------CHHHhccCCCcceEEeecCCcccccccHHHHHHHHH
Confidence 4456677784 3333332 23588887743321 1111 1243 2355555666677777777777654
Q ss_pred ccccCCCCcccCCceEEE-ccC-----------------------CCChhHHH---HhcCCccceEeeeccccCCCCcee
Q 024689 126 MNLSNSYGKVDVPRQLVI-ERD-----------------------ASSIPDVV---LKAGLTLPLVAKPLVADGSAKSHE 178 (264)
Q Consensus 126 l~~~~~~~~i~vP~~v~i-~~~-----------------------~~~~~~~l---~~agL~fPlI~KPlvA~Gs~~SH~ 178 (264)
......... ..|+..++ ..+ ...+.+.. +..|-.-+||+||...+. ...
T Consensus 87 ~~~~~~~~~-f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~sr---G~G 162 (380)
T 3tig_A 87 SPELTETCT-WFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAK---GEG 162 (380)
T ss_dssp CHHHHTTCT-TSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC-------C
T ss_pred hhhcccccC-cCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCC---CCC
Confidence 211111112 23554444 111 01122222 245788999999976533 233
Q ss_pred EEEEeccCccCC----CCCceeEEEeeec------cc--eEEEEEEE
Q 024689 179 LSLAYDQYSLKK----LEPPLVLQEFVNH------GG--VLFKVYIV 213 (264)
Q Consensus 179 Malvf~~~gL~~----L~~P~VlQEFINH------gg--vLfKVYVI 213 (264)
+.|+-+.+.+.+ -..+.|+|+||.+ +| .=+.+||+
T Consensus 163 I~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 163 ILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp CBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEE
T ss_pred EEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEE
Confidence 445444444432 1468999999975 44 45577777
No 75
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.96 E-value=41 Score=27.97 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=44.9
Q ss_pred CCCcEEEEEEechhhhhcc---chhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccC-chHHHHHHH
Q 024689 26 QSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLT-GKEWRQILE 92 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKlt-d~~~~~~l~ 92 (264)
.++..+||+.++.-. ..| ...++...|+++|+.++-.+.+...+.| ..+|.||==-. .......++
T Consensus 5 ~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDK-HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp ----CEEEEEESCSC-SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCCCcEEEEEEecCC-cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 456789999997643 222 2335667889999999988776443221 45675443222 222334555
Q ss_pred HHHHhCCCeEEeCc
Q 024689 93 EYRQTHPEVTVLDP 106 (264)
Q Consensus 93 ~y~~~hP~v~VIDP 106 (264)
+..+..-.++++|.
T Consensus 84 ~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 84 EAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHTTCCEEEESS
T ss_pred HHHHcCCCEEEecC
Confidence 55565556777764
No 76
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=43.22 E-value=66 Score=26.62 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCcEEEEEEechhhhhcc---chhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCc-hHHHHHHHH
Q 024689 27 SKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTG-KEWRQILEE 93 (264)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKltd-~~~~~~l~~ 93 (264)
.+..+||+.++.-- ..| ...++...|+++|+.++-.+.....+.| ..+|.||==-.+ ......+++
T Consensus 3 ~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 3 LEGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp CTTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 34678999998543 222 2345667899999999888765543221 357766633333 234455666
Q ss_pred HHHhCCCeEEeCch
Q 024689 94 YRQTHPEVTVLDPP 107 (264)
Q Consensus 94 y~~~hP~v~VIDP~ 107 (264)
..+..-.++++|..
T Consensus 82 ~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 82 INDAGIPLFTVDTA 95 (291)
T ss_dssp HHHTTCCEEEESCC
T ss_pred HHHCCCcEEEecCC
Confidence 66666567777743
No 77
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=42.10 E-value=58 Score=26.88 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=34.9
Q ss_pred CCcEEEEEEechhhhhcc---chhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEE
Q 024689 27 SKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVL 79 (264)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvIL 79 (264)
++..+||+.++.-. ..| ...++...|+++|+.++-.+.+ ..+.| ..+|.||
T Consensus 3 ~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYS-NPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTT-SGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred CccCEEEEEeCCCC-ChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 35678999997642 222 2334667888999999988887 44432 5789888
No 78
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=40.54 E-value=46 Score=30.38 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=55.3
Q ss_pred cCCCcEEEEEEechhh-hhccch---hhHHhHHHhcC--cEEEEecCCCCCCC---------CCCceEEEeccCchHHHH
Q 024689 25 QQSKLVVVGYALTSKK-TKSFLQ---PKLEGLARNKG--ILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQ 89 (264)
Q Consensus 25 ~~~~~~~VGy~l~~kK-~~~f~~---~~l~~~~~~~g--i~fv~ID~~~pl~~---------QgpfDvILHKltd~~~~~ 89 (264)
...+.++||+..+-.. -++|++ .++..++++.| +++.-++....-++ +..+|+|+= +.-.+.+
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~--~g~~~~~ 99 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFT--TSFGYMD 99 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE--CSGGGHH
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE--CCHHHHH
Confidence 3456789999996433 235654 55667888899 88877765433211 135897773 4445566
Q ss_pred HHHHHHHhCCC--eEEeCc---hhHHhhhcCHH
Q 024689 90 ILEEYRQTHPE--VTVLDP---PYAIQHLHNRQ 117 (264)
Q Consensus 90 ~l~~y~~~hP~--v~VIDP---~~ai~~L~nR~ 117 (264)
.+.+..++||+ ++++|- ..++..+.-|.
T Consensus 100 ~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~ 132 (356)
T 3s99_A 100 PTVKVAKKFPDVKFEHATGYKTADNMSAYNARF 132 (356)
T ss_dssp HHHHHHTTCTTSEEEEESCCCCBTTEEEEEECH
T ss_pred HHHHHHHHCCCCEEEEEeccccCCcEEEEEech
Confidence 78888999997 455654 34555554443
No 79
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=36.65 E-value=1e+02 Score=23.05 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=47.6
Q ss_pred cchhhHHhHHHhcCcEE--EEecCCCCCCC-CCCceEEEeccCchHHHHHHHHHHH-hCCCeEEeCchhHHhhhcCHHHH
Q 024689 44 FLQPKLEGLARNKGILF--VAIDQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQ-THPEVTVLDPPYAIQHLHNRQSM 119 (264)
Q Consensus 44 f~~~~l~~~~~~~gi~f--v~ID~~~pl~~-QgpfDvILHKltd~~~~~~l~~y~~-~hP~v~VIDP~~ai~~L~nR~~m 119 (264)
+...++...++++|+++ -..+... +++ ...+|+||-=..=......+++... .+-.|++|+|.... .+|...+
T Consensus 19 ll~~kl~~~~~~~gi~~~i~~~~~~~-~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~v 95 (109)
T 2l2q_A 19 MLVQRIEKYAKSKNINATIEAIAETR-LSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEKV 95 (109)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECSTT-HHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHH-HHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHHH
Confidence 45556777788888753 3334332 111 2468998764332222445554443 35678999998775 5788877
Q ss_pred HHHHHh
Q 024689 120 LQCVAD 125 (264)
Q Consensus 120 l~~l~~ 125 (264)
++.+.+
T Consensus 96 l~~i~~ 101 (109)
T 2l2q_A 96 LQLAIN 101 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 80
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=35.33 E-value=1.1e+02 Score=25.89 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=41.5
Q ss_pred CcEEEEEEechhhhh--ccchhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCch-HHHHHHHHHH
Q 024689 28 KLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK-EWRQILEEYR 95 (264)
Q Consensus 28 ~~~~VGy~l~~kK~~--~f~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKltd~-~~~~~l~~y~ 95 (264)
+..+||+.++.-.-. .-...++...|+++|+.++-.+.+...+.| ..+|.||=--.+. .....+++..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~ 81 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAG 81 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHH
Confidence 457899998864311 112335667889999998877744332211 2355444322222 2333444444
Q ss_pred HhCCCeEEeC
Q 024689 96 QTHPEVTVLD 105 (264)
Q Consensus 96 ~~hP~v~VID 105 (264)
+..-.|+++|
T Consensus 82 ~~giPvV~~~ 91 (330)
T 3uug_A 82 EQGIKVIAYD 91 (330)
T ss_dssp HTTCEEEEES
T ss_pred HCCCCEEEEC
Confidence 4444555555
No 81
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=34.36 E-value=80 Score=25.26 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=41.1
Q ss_pred cEEEEEEechhhhhccchhhHHh--H--HHhcCcEEEEecCCCCCCCCCCceEEE-----eccCchHHHHHHHHHHHh-C
Q 024689 29 LVVVGYALTSKKTKSFLQPKLEG--L--ARNKGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQT-H 98 (264)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~l~~--~--~~~~gi~fv~ID~~~pl~~QgpfDvIL-----HKltd~~~~~~l~~y~~~-h 98 (264)
..++|.=+++.-.+.... .+.. + ....++.|+.-|+...-...+.||+|+ |-+.+..+.+.+++..+. .
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (219)
T 3jwg_A 54 EQITGVDVSYSVLERAKD-RLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR 132 (219)
T ss_dssp CEEEEEESCHHHHHHHHH-HHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 467888777654332211 1100 0 011279999999865444457899997 334444455555554432 4
Q ss_pred CC-eEEeCc
Q 024689 99 PE-VTVLDP 106 (264)
Q Consensus 99 P~-v~VIDP 106 (264)
|+ +++..|
T Consensus 133 pgG~~i~~~ 141 (219)
T 3jwg_A 133 PQTVIVSTP 141 (219)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEcc
Confidence 54 444433
No 82
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=31.76 E-value=2e+02 Score=24.43 Aligned_cols=98 Identities=6% Similarity=0.094 Sum_probs=50.5
Q ss_pred HHHHHHhhHhhhccCCccc--cCCCcEEEEEEechhhhhcc---chhhHHhHHHhcCcEEEEe--cCC--CCCCC-----
Q 024689 6 EEIEEQTREEELLSFPQTQ--QQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAI--DQN--RPLSD----- 71 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~fv~I--D~~--~pl~~----- 71 (264)
+.|.+-++| ++--|+.. ...+..+||+.++..-...| ...++...|+++|+.+.-. +.+ ...+.
T Consensus 20 ~rV~~aa~e--lgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i 97 (342)
T 1jx6_A 20 NLTNALSEA--VRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSL 97 (342)
T ss_dssp HHHHHHHHH--HHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHH
Confidence 344444443 33445543 34567899999975111222 2335667888899876544 333 12111
Q ss_pred ----CCCceEEEeccCchH-HHHHHHHHHHh-CCCeEEeCc
Q 024689 72 ----QGPFDIVLHKLTGKE-WRQILEEYRQT-HPEVTVLDP 106 (264)
Q Consensus 72 ----QgpfDvILHKltd~~-~~~~l~~y~~~-hP~v~VIDP 106 (264)
+..+|.||- ..+.. ....+++..+. .|-|+++|-
T Consensus 98 ~~l~~~~vdgiIi-~~~~~~~~~~~~~~~~~~ip~V~~~~~ 137 (342)
T 1jx6_A 98 MEALKSKSDYLIF-TLDTTRHRKFVEHVLDSTNTKLILQNI 137 (342)
T ss_dssp HHHHHTTCSEEEE-CCSSSTTHHHHHHHHHHCSCEEEEETC
T ss_pred HHHHhcCCCEEEE-eCChHhHHHHHHHHHHcCCCEEEEecC
Confidence 146887776 54432 23345555444 454445463
No 83
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=31.13 E-value=1.2e+02 Score=25.17 Aligned_cols=42 Identities=7% Similarity=0.009 Sum_probs=27.0
Q ss_pred CCCcEEEEEEechhhhh--ccchhhHHhHHHhcCcEEEEecCCC
Q 024689 26 QSKLVVVGYALTSKKTK--SFLQPKLEGLARNKGILFVAIDQNR 67 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK~~--~f~~~~l~~~~~~~gi~fv~ID~~~ 67 (264)
+++..+||+.++.-.-. .-...++...|+++|+.++-.+.+.
T Consensus 2 s~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~ 45 (304)
T 3o1i_D 2 SGSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG 45 (304)
T ss_dssp ---CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 34578999999864311 1122356678899999998888765
No 84
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=31.03 E-value=63 Score=28.84 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=32.6
Q ss_pred CcEEEEecCCCC---CCCCCCceEEE-----eccCchHHHHHHHHHHHh-CC--CeEEeCch
Q 024689 57 GILFVAIDQNRP---LSDQGPFDIVL-----HKLTGKEWRQILEEYRQT-HP--EVTVLDPP 107 (264)
Q Consensus 57 gi~fv~ID~~~p---l~~QgpfDvIL-----HKltd~~~~~~l~~y~~~-hP--~v~VIDP~ 107 (264)
+++|+.-|+..+ +. +.||+|+ |-+.+....+.|++..+. .| -++|+|+.
T Consensus 230 ~v~~~~~d~~~~~~~~p--~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFP--TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp GEEEEECCCCSSSCCCC--CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ceEEEEccccccCCCCC--CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 589999999773 54 6799875 445566666666665543 33 46777764
No 85
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=31.02 E-value=98 Score=24.35 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=27.7
Q ss_pred EEEEEEechhhhhccchhhHHhHHHhc---CcEEEEecCCCCCCCCCCceEEEe
Q 024689 30 VVVGYALTSKKTKSFLQPKLEGLARNK---GILFVAIDQNRPLSDQGPFDIVLH 80 (264)
Q Consensus 30 ~~VGy~l~~kK~~~f~~~~l~~~~~~~---gi~fv~ID~~~pl~~QgpfDvILH 80 (264)
.++|.=+++. ++..|++. ++.|+..|+... ...+.||+|+-
T Consensus 70 ~v~~~D~s~~---------~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~ 113 (218)
T 3ou2_A 70 RVTALDGSAE---------MIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFF 113 (218)
T ss_dssp EEEEEESCHH---------HHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEE
T ss_pred eEEEEeCCHH---------HHHHHHhcCCCCeEEEecccccC-CCCCceeEEEE
Confidence 4666666554 33344443 489999999776 55679999983
No 86
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=29.35 E-value=31 Score=28.04 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=19.5
Q ss_pred CcEEEEecCCCCCCCCCCceEEEec
Q 024689 57 GILFVAIDQNRPLSDQGPFDIVLHK 81 (264)
Q Consensus 57 gi~fv~ID~~~pl~~QgpfDvILHK 81 (264)
++.++..|....+...++||+|+--
T Consensus 117 ~v~~~~~d~~~~~~~~~~fD~v~~~ 141 (231)
T 1vbf_A 117 NIKLILGDGTLGYEEEKPYDRVVVW 141 (231)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CeEEEECCcccccccCCCccEEEEC
Confidence 6889999987766667889988743
No 87
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=28.25 E-value=1.2e+02 Score=25.17 Aligned_cols=75 Identities=9% Similarity=0.049 Sum_probs=47.0
Q ss_pred cEEEEEEechhhhhcc---chhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCch-HHHHHHHHHH
Q 024689 29 LVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK-EWRQILEEYR 95 (264)
Q Consensus 29 ~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKltd~-~~~~~l~~y~ 95 (264)
.++||+.++.-- ..| ...++...|+++|++++-.+.. ..+.| ..+|.||=--.+. .....+++..
T Consensus 2 ~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 2 NLKLGFLVKQPE-EPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp CEEEEEEESCTT-SHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred CeEEEEEeCCCC-chHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence 578999987543 222 2335667889999999888763 22211 3578665433333 3344566666
Q ss_pred HhCCCeEEeC
Q 024689 96 QTHPEVTVLD 105 (264)
Q Consensus 96 ~~hP~v~VID 105 (264)
+..-.|+++|
T Consensus 80 ~~~iPvV~~~ 89 (306)
T 8abp_A 80 GYDMKVIAVD 89 (306)
T ss_dssp HTTCEEEEES
T ss_pred HCCCcEEEeC
Confidence 7777888888
No 88
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=28.05 E-value=63 Score=26.10 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=24.4
Q ss_pred hHHhHHHhcCcEEEEecCCCCCCCCCCceEEEec
Q 024689 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHK 81 (264)
Q Consensus 48 ~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHK 81 (264)
.++..|+++++.++..|+...-...+.||+|+--
T Consensus 76 ~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 76 RMAEIARKRGVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp HHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEc
Confidence 4566777779999999986532234689998844
No 89
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=27.30 E-value=2e+02 Score=21.77 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred ccchhhHHhHHHhcCcEEEE--ecCCCCCCCC-CCceEEEeccCchHH---HHHHHHHHHh-CCCeEEeCchhHHhhhcC
Q 024689 43 SFLQPKLEGLARNKGILFVA--IDQNRPLSDQ-GPFDIVLHKLTGKEW---RQILEEYRQT-HPEVTVLDPPYAIQHLHN 115 (264)
Q Consensus 43 ~f~~~~l~~~~~~~gi~fv~--ID~~~pl~~Q-gpfDvILHKltd~~~---~~~l~~y~~~-hP~v~VIDP~~ai~~L~n 115 (264)
++.-.++...|+++|+++-- ..... +.+. ..+|+||= +.+. .+.+++.... +=.|.+|||-+-..-.+|
T Consensus 20 sllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~~~~DvvLL---gPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~ 95 (108)
T 3nbm_A 20 AQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIIL---APQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKS 95 (108)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTGGGCSEEEE---CGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCceEEEEcchHH-HHhhccCCCEEEE---ChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCC
Confidence 44555677788999987543 33433 3333 36899874 3333 3445555544 347899999887766788
Q ss_pred HHHHHHHHH
Q 024689 116 RQSMLQCVA 124 (264)
Q Consensus 116 R~~ml~~l~ 124 (264)
=...++.+.
T Consensus 96 g~~vl~~~~ 104 (108)
T 3nbm_A 96 PSKALQFVL 104 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777553
No 90
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.04 E-value=1.4e+02 Score=24.59 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=45.2
Q ss_pred CCCcEEEEEEechhhh--hccchhhHHhHHHhcCcEEEEecCCCCCCC---------CCCceEEEeccCchHHHHHHHHH
Q 024689 26 QSKLVVVGYALTSKKT--KSFLQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILEEY 94 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK~--~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~---------QgpfDvILHKltd~~~~~~l~~y 94 (264)
.++..+||+.++.-.- -.-...++...|+++|+.++-.+.....+. +..+|.||==-.+. ...++..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 4567899999986431 111233566788999999988876543221 24566444322222 3444455
Q ss_pred HHhCCCeEEeCc
Q 024689 95 RQTHPEVTVLDP 106 (264)
Q Consensus 95 ~~~hP~v~VIDP 106 (264)
.+..=.++++|.
T Consensus 82 ~~~~iPvV~i~~ 93 (276)
T 3jy6_A 82 LHQQMPVVSVDR 93 (276)
T ss_dssp HTTSSCEEEESC
T ss_pred HHCCCCEEEEec
Confidence 545556666764
No 91
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.80 E-value=2.7e+02 Score=23.77 Aligned_cols=95 Identities=8% Similarity=-0.026 Sum_probs=51.8
Q ss_pred HHHHHHhhHhhhccCCccc----cCCCcEEEEEEechhhhhccc---hhhHHhHHHhcCcEEEEecCCCCCCC-------
Q 024689 6 EEIEEQTREEELLSFPQTQ----QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSD------- 71 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~----~~~~~~~VGy~l~~kK~~~f~---~~~l~~~~~~~gi~fv~ID~~~pl~~------- 71 (264)
+.|.+-+++ ++-.|+.. ...+..+||+.++.-. ..|. ..++...|+++|+.++-.+.+...+.
T Consensus 43 ~rV~~~~~~--lgY~pn~~a~~l~~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~ 119 (344)
T 3kjx_A 43 ARVLAAAKE--LGYVPNKIAGALASNRVNLVAVIIPSLS-NMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYE 119 (344)
T ss_dssp HHHHHHHHH--HTCCCCCCCSCSTTSCCSEEEEEESCSS-SSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCCHHHHHhhcCCCCEEEEEeCCCC-cHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH
Confidence 334444443 44455543 3456789999987642 2222 23566688889999987766543221
Q ss_pred --CCCceEEEeccCchHHHHHHHHHHHhCCCeEEe
Q 024689 72 --QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (264)
Q Consensus 72 --QgpfDvILHKltd~~~~~~l~~y~~~hP~v~VI 104 (264)
+..+|-||==-++... ..++...+..-.++++
T Consensus 120 l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 120 MLSWRPSGVIIAGLEHSE-AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHTTCCSEEEEECSCCCH-HHHHHHHHCSSCEEEE
T ss_pred HHhCCCCEEEEECCCCCH-HHHHHHHhCCCCEEEE
Confidence 2467855432222111 3344455555567777
No 92
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=24.54 E-value=43 Score=27.63 Aligned_cols=24 Identities=13% Similarity=0.458 Sum_probs=19.5
Q ss_pred CcEEEEecCCCCCCCCCCceEEEe
Q 024689 57 GILFVAIDQNRPLSDQGPFDIVLH 80 (264)
Q Consensus 57 gi~fv~ID~~~pl~~QgpfDvILH 80 (264)
++.++.-|...++.+.++||+|+=
T Consensus 141 ~v~~~~~d~~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 141 NVHVILGDGSKGFPPKAPYDVIIV 164 (235)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CcEEEECCcccCCCCCCCccEEEE
Confidence 478888898778777778999983
No 93
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.11 E-value=1.5e+02 Score=24.50 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=42.4
Q ss_pred CCCcEEEEEEechhhhhcc---chhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCchHHHHHHHH
Q 024689 26 QSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGKEWRQILEE 93 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKltd~~~~~~l~~ 93 (264)
.++..+||+.++.-. ..| ...++...|+++|+.++-.+.....+.| ..+|.||==-.+. ....++.
T Consensus 5 ~~~~~~Igvv~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 5 SKRSNVVGLIVSDIE-NVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp --CCCEEEEEESCTT-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred cCCCcEEEEEECCCc-chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 446789999997643 222 2235666889999999888765442221 4566554211111 1223333
Q ss_pred HHHhCCCeEEeCc
Q 024689 94 YRQTHPEVTVLDP 106 (264)
Q Consensus 94 y~~~hP~v~VIDP 106 (264)
..+..-.++++|.
T Consensus 83 ~~~~~iPvV~~~~ 95 (291)
T 3egc_A 83 ELPKTFPIVAVNR 95 (291)
T ss_dssp SSCTTSCEEEESS
T ss_pred hhccCCCEEEEec
Confidence 3344445666664
No 94
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=23.27 E-value=65 Score=32.95 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=37.4
Q ss_pred hhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEeccCch-------HHHHHHHHHHHhCCCeEE
Q 024689 41 TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK-------EWRQILEEYRQTHPEVTV 103 (264)
Q Consensus 41 ~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHKltd~-------~~~~~l~~y~~~hP~v~V 103 (264)
.+.++...+..+.++.||+++++|+++.+.+-+--..==.+. ++ -+-+.+++..++||++++
T Consensus 456 vr~~i~~~l~~ll~~~GIDy~K~D~nr~i~~~~~~~~~~~~q-~~~~~~y~~g~y~ll~~l~~~~P~v~i 524 (745)
T 3mi6_A 456 VVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQQ-LELPHRYILGVYQLYARLTQAYPNVLF 524 (745)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCSCCCSCCCSSSCGGGG-GGHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCcccCCCcCccccc-cHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 445555555567788999999999999885432100000000 11 123457778899999875
No 95
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.91 E-value=1.7e+02 Score=24.50 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=45.9
Q ss_pred cEEEEEEechhhhhcc---chhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCch-HHHHHHHHHH
Q 024689 29 LVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK-EWRQILEEYR 95 (264)
Q Consensus 29 ~~~VGy~l~~kK~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKltd~-~~~~~l~~y~ 95 (264)
..+||+.++.-- ..| ...++...|+++|+.++-.+.....+.| ..+|.||=--.+. .....+++..
T Consensus 2 ~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 2 EVKIGMAIDDLR-LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp -CEEEEEESCCS-SSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred CcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 468999887632 222 2335667889999999888775443222 4677555333332 2345566666
Q ss_pred HhCCCeEEeCc
Q 024689 96 QTHPEVTVLDP 106 (264)
Q Consensus 96 ~~hP~v~VIDP 106 (264)
+..-.++++|.
T Consensus 81 ~~~iPvV~~~~ 91 (313)
T 3m9w_A 81 QEGIKVLAYDR 91 (313)
T ss_dssp TTTCEEEEESS
T ss_pred HCCCeEEEECC
Confidence 66656777764
No 96
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=22.68 E-value=2.3e+02 Score=23.49 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=28.6
Q ss_pred cCCCcEEEEEEechhhhhccc---hhhHHhHHHhcCcEEEEecCCCC
Q 024689 25 QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRP 68 (264)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~---~~~l~~~~~~~gi~fv~ID~~~p 68 (264)
..++..+||+.++.-.-.-|. ..++...|+++|+.++-.+.+..
T Consensus 9 ~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~ 55 (301)
T 3miz_A 9 RSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGS 55 (301)
T ss_dssp ---CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred hhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345678999999875422222 33566788999999988776543
No 97
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=22.66 E-value=64 Score=25.89 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=40.2
Q ss_pred cEEEEEEechhhhhccchhhHHh----HHHhcCcEEEEecCCCCCCCCCCceEEE-----eccCchHHHHHHHHHHH-hC
Q 024689 29 LVVVGYALTSKKTKSFLQPKLEG----LARNKGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQ-TH 98 (264)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~l~~----~~~~~gi~fv~ID~~~pl~~QgpfDvIL-----HKltd~~~~~~l~~y~~-~h 98 (264)
..++|.=+++.-.+.... .+.. ......+.|+.-|+...-...+.||+|+ |-+++..+.+.+++..+ -.
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (217)
T 3jwh_A 54 EQITGVDVSYRSLEIAQE-RLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ 132 (217)
T ss_dssp SEEEEEESCHHHHHHHHH-HHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 467788777653322111 1100 0011269999999865444457899987 33344444555554432 24
Q ss_pred CC-eEEeCch
Q 024689 99 PE-VTVLDPP 107 (264)
Q Consensus 99 P~-v~VIDP~ 107 (264)
|+ ++++-|.
T Consensus 133 pgG~li~~~~ 142 (217)
T 3jwh_A 133 PKIVIVTTPN 142 (217)
T ss_dssp CSEEEEEEEB
T ss_pred CCEEEEEccC
Confidence 43 4444443
No 98
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.65 E-value=1.8e+02 Score=23.74 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=43.4
Q ss_pred CCCcEEEEEEechh-hhhcc---chhhHHhHHHhcCcEEEEecCCCCCCC---------CCCceEEEeccCchHHHHHHH
Q 024689 26 QSKLVVVGYALTSK-KTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILE 92 (264)
Q Consensus 26 ~~~~~~VGy~l~~k-K~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~---------QgpfDvILHKltd~~~~~~l~ 92 (264)
..+..+||+.++.. -...| ...++...|+++|+.++-.+.+...+. +..+|.||==-.+.. ...++
T Consensus 16 ~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~ 94 (296)
T 3brq_A 16 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VDEID 94 (296)
T ss_dssp ---CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HHHHH
T ss_pred cCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHHH
Confidence 44568999999762 11222 233566788899999987776543221 246885553222211 12344
Q ss_pred HHHH-hCCCeEEeCc
Q 024689 93 EYRQ-THPEVTVLDP 106 (264)
Q Consensus 93 ~y~~-~hP~v~VIDP 106 (264)
...+ ..-.++++|.
T Consensus 95 ~l~~~~~iPvV~~~~ 109 (296)
T 3brq_A 95 DIIDAHSQPIMVLNR 109 (296)
T ss_dssp HHHHTCSSCEEEESC
T ss_pred HHHhcCCCCEEEEcc
Confidence 4444 4556888874
No 99
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase, phospholipid degradation, virulence factor of human pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2 PDB: 1aod_A*
Probab=22.12 E-value=83 Score=27.59 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=32.5
Q ss_pred cCcEEEEecCCCCCCCCCCceEEEeccCc-----hHHHHHHHHHHHhCC-CeEEeCc
Q 024689 56 KGILFVAIDQNRPLSDQGPFDIVLHKLTG-----KEWRQILEEYRQTHP-EVTVLDP 106 (264)
Q Consensus 56 ~gi~fv~ID~~~pl~~QgpfDvILHKltd-----~~~~~~l~~y~~~hP-~v~VIDP 106 (264)
.|+.+.-|+.. +.+ .+.|-... +++.+.+.+|.++|| ++++|+=
T Consensus 56 ~GvR~ldlr~~------~~~-~~~H~~~~~~~~~~~~L~~i~~fL~~~P~EvVil~~ 105 (274)
T 2plc_A 56 AGIRYIDIRAK------DNL-NIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRL 105 (274)
T ss_dssp TTCCEEEEEEC------TTS-EEEETTEEEEEEHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred hCCcEEEEEEC------CcE-EEEEcCCCCCCCHHHHHHHHHHHHHhCCCceEEEEE
Confidence 49999999987 222 45665542 367788999999999 8888753
No 100
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=21.79 E-value=54 Score=26.25 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=29.1
Q ss_pred cEEEEEEechhhhhccchhhHHhHHHhcCcEEEEecCCCCCCCCCCceEEEec
Q 024689 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHK 81 (264)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~l~~~~~~~gi~fv~ID~~~pl~~QgpfDvILHK 81 (264)
..++|.-.++...+... ..+... .-.++.++.-|...++...++||+|+--
T Consensus 103 ~~v~~vD~~~~~~~~a~-~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 103 GLVVSIERIPELAEKAE-RTLRKL-GYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp SEEEEEESCHHHHHHHH-HHHHHH-TCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CEEEEEeCCHHHHHHHH-HHHHHc-CCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 45666666655433221 111110 1124888888887776667889998754
No 101
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=21.73 E-value=1.6e+02 Score=26.14 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=33.2
Q ss_pred cCcEEEEecCCCCCCCCCCceEEE-----eccCchHHHHHHHHHHHhC-C--CeEEeCch
Q 024689 56 KGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQTH-P--EVTVLDPP 107 (264)
Q Consensus 56 ~gi~fv~ID~~~pl~~QgpfDvIL-----HKltd~~~~~~l~~y~~~h-P--~v~VIDP~ 107 (264)
..++|+..|+..++.. .||+|+ |-+.+....+.|++..+.- | -++|+|+.
T Consensus 252 ~~v~~~~~d~~~~~p~--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 252 DRCEILPGDFFETIPD--GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp TTEEEEECCTTTCCCS--SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred CceEEeccCCCCCCCC--CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3599999999866654 799875 4555555556676665442 3 46666653
No 102
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=21.02 E-value=57 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=19.3
Q ss_pred CcEEEEecCCCCCCCCCCceEEEec
Q 024689 57 GILFVAIDQNRPLSDQGPFDIVLHK 81 (264)
Q Consensus 57 gi~fv~ID~~~pl~~QgpfDvILHK 81 (264)
++.++.-|....+...++||+|+=-
T Consensus 126 ~v~~~~~d~~~~~~~~~~~D~i~~~ 150 (210)
T 3lbf_A 126 NVSTRHGDGWQGWQARAPFDAIIVT 150 (210)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEES
T ss_pred ceEEEECCcccCCccCCCccEEEEc
Confidence 4788888887766667889988853
No 103
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=20.81 E-value=1.1e+02 Score=21.55 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=17.0
Q ss_pred ccceEEEEE-EECceEEEEEecCC
Q 024689 203 HGGVLFKVY-IVGEAIKVVRRFSL 225 (264)
Q Consensus 203 HggvLfKVY-VIGd~v~vv~R~SL 225 (264)
|.---||+| ||||++.++.-+-.
T Consensus 7 hamdtyklfivigdrvvvt~tkav 30 (65)
T 1mhx_A 7 HAMDTYKLFIVIGDRVVVVTTEAV 30 (65)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEES
T ss_pred cccceeeEEEEEcCEEEEEEeehh
Confidence 445568877 68999999876654
No 104
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.43 E-value=3.1e+02 Score=23.25 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=45.9
Q ss_pred CCCcEEEEEEechhh-hhcc---chhhHHhHHHhcCcEEEEecCCCCCCCC---------CCceEEEeccCchHHHHHHH
Q 024689 26 QSKLVVVGYALTSKK-TKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGKEWRQILE 92 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK-~~~f---~~~~l~~~~~~~gi~fv~ID~~~pl~~Q---------gpfDvILHKltd~~~~~~l~ 92 (264)
..+..+||+.++..- ...| ...++...|+++|+.++-.+.....+.| ..+|.||==-.+... ..+.
T Consensus 58 ~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~ 136 (338)
T 3dbi_A 58 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEID 136 (338)
T ss_dssp --CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-HHHH
T ss_pred hCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHH
Confidence 456789999998621 1122 2235667889999999888765433221 467865542222221 3345
Q ss_pred HHHHhCC-CeEEeCc
Q 024689 93 EYRQTHP-EVTVLDP 106 (264)
Q Consensus 93 ~y~~~hP-~v~VIDP 106 (264)
++.++++ .++++|.
T Consensus 137 ~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 137 DIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHCSSCEEEESS
T ss_pred HHHHcCCCCEEEEcC
Confidence 5555553 6888874
No 105
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=20.08 E-value=2.3e+02 Score=24.05 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=44.1
Q ss_pred CCCcEEEEEEechhhhhccc---hhhHHhHHHhc-CcEEEEecCCCCCCC---------CCCceEEEeccCch-HHHHHH
Q 024689 26 QSKLVVVGYALTSKKTKSFL---QPKLEGLARNK-GILFVAIDQNRPLSD---------QGPFDIVLHKLTGK-EWRQIL 91 (264)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~---~~~l~~~~~~~-gi~fv~ID~~~pl~~---------QgpfDvILHKltd~-~~~~~l 91 (264)
+++..+||+.++. ...|. ..++...|+++ |+.++-.+.....+. +..+|.||==-.+. .....+
T Consensus 3 ~~~~~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 3 DTPHFRIGVAQCS--DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp ---CCEEEEEESC--CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CCCCeEEEEEecC--CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 4456799998876 33332 23455677888 999987776443221 14577555333332 223445
Q ss_pred HHHHHhCCCeEEeCc
Q 024689 92 EEYRQTHPEVTVLDP 106 (264)
Q Consensus 92 ~~y~~~hP~v~VIDP 106 (264)
+...+..-.++++|.
T Consensus 81 ~~~~~~~iPvV~~~~ 95 (325)
T 2x7x_A 81 EEAYQKGIPVILVDR 95 (325)
T ss_dssp HHHHHTTCCEEEESS
T ss_pred HHHHHCCCeEEEeCC
Confidence 555555556777774
Done!