RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 024689
         (264 letters)



>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 327

 Score = 28.7 bits (63), Expect = 0.67
 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVL 207
           + IP          P V  P  A     +  L L        K +   +       G VL
Sbjct: 6   TPIPQQKHYESKPFPAVISPPSASIPIPALSLPLFTQ---TIKTQKHYLDSLLHESGAVL 62

Query: 208 FK 209
           F+
Sbjct: 63  FR 64


>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 336

 Score = 27.9 bits (61), Expect = 1.3
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 85  KEWRQILEEYRQTHPE 100
           K W ++L +Y    P 
Sbjct: 307 KAWEELLAKYTAAFPA 322


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 27.0 bits (59), Expect = 2.2
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 85  KEWRQILEEYRQTHPE 100
            +W ++  EY++  PE
Sbjct: 308 NKWNKLFSEYQKKFPE 323


>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
           (Zea mays) [TaxId: 4577]}
          Length = 338

 Score = 27.1 bits (59), Expect = 2.2
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 85  KEWRQILEEYRQTHPE 100
            +W     EY + + +
Sbjct: 311 ADWNAKFAEYEKKYAD 326


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 26.7 bits (58), Expect = 3.5
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 85  KEWRQILEEYRQTHPE 100
             W +    Y + +P+
Sbjct: 304 SAWNEKFAAYAKAYPQ 319


>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus
           [TaxId: 49283]}
          Length = 362

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 3/17 (17%), Positives = 10/17 (58%)

Query: 87  WRQILEEYRQTHPEVTV 103
              +L+++++  P V +
Sbjct: 18  QAAVLDQWQRQEPGVKL 34


>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 551

 Score = 26.5 bits (58), Expect = 4.2
 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 79  LHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 138
           L+ +   E    LE  ++ +              + + + +   + D    +S GK    
Sbjct: 420 LNLMLAGEGHSRLERLKKRY----------ISYMVSDWRDLTANLMDSVFIDSSGKKSKD 469

Query: 139 RQLVIER 145
           ++ + E+
Sbjct: 470 KEQIKEK 476


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 25.9 bits (56), Expect = 7.1
 Identities = 10/105 (9%), Positives = 30/105 (28%), Gaps = 2/105 (1%)

Query: 2   RMMKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFV 61
              +  I ++        F +  +                        E    +      
Sbjct: 624 NKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTEN 683

Query: 62  AIDQNRPLSDQGPF--DIVLHKLTGKEWRQILEEYRQTHPEVTVL 104
            I+    L     +   + +  LT + ++++L++ ++   E+  L
Sbjct: 684 VINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENL 728


>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding
           protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 60

 Score = 23.6 bits (51), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 81  KLTGKEW--RQILEEYRQTHPEVTVLDPPY 108
           +L G++    + L E+ + HP  TV  P Y
Sbjct: 17  RLVGEDAPKNKDLVEWLKLHPTYTVDMPSY 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 945,189
Number of extensions: 42345
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 11
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)