Query 024690
Match_columns 264
No_of_seqs 162 out of 1139
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1.4E-61 3.1E-66 443.5 24.0 259 3-263 100-373 (408)
2 KOG2287 Galactosyltransferases 100.0 5.7E-53 1.2E-57 388.4 21.2 216 36-261 95-314 (349)
3 PLN03133 beta-1,3-galactosyltr 100.0 1E-52 2.2E-57 405.1 22.8 220 33-262 382-609 (636)
4 PF01762 Galactosyl_T: Galacto 100.0 5E-51 1.1E-55 347.3 16.7 191 50-248 1-195 (195)
5 KOG2288 Galactosyltransferases 100.0 8.1E-48 1.8E-52 329.6 15.0 228 33-262 8-237 (274)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 6.8E-34 1.5E-38 257.7 16.4 192 31-241 75-307 (382)
7 PF02434 Fringe: Fringe-like; 99.9 1.1E-21 2.3E-26 173.5 11.8 195 36-256 6-211 (252)
8 KOG2246 Galactosyltransferases 99.7 1.9E-16 4.2E-21 146.2 12.7 172 29-247 84-268 (364)
9 PLN03153 hypothetical protein; 99.4 9.1E-12 2E-16 117.9 16.3 207 10-255 98-320 (537)
10 KOG3708 Uncharacterized conser 97.6 0.0004 8.6E-09 66.1 9.2 101 123-246 84-193 (681)
11 PF13641 Glyco_tranf_2_3: Glyc 97.2 0.013 2.9E-07 49.7 13.9 187 37-245 2-200 (228)
12 TIGR03472 HpnI hopanoid biosyn 96.9 0.031 6.7E-07 52.1 14.7 191 35-245 40-243 (373)
13 PF01755 Glyco_transf_25: Glyc 96.4 0.045 9.8E-07 46.1 10.7 94 40-150 4-101 (200)
14 cd02520 Glucosylceramide_synth 96.4 0.3 6.6E-06 40.6 15.7 136 74-245 30-167 (196)
15 TIGR03469 HonB hopene-associat 96.2 0.27 5.9E-06 46.0 15.8 194 32-241 36-248 (384)
16 cd04196 GT_2_like_d Subfamily 95.7 0.26 5.6E-06 40.9 11.9 180 53-248 11-198 (214)
17 cd02525 Succinoglycan_BP_ExoA 95.6 0.72 1.6E-05 39.1 14.8 170 73-254 30-209 (249)
18 PRK11204 N-glycosyltransferase 95.6 1.3 2.7E-05 41.7 17.5 197 33-252 51-259 (420)
19 cd06439 CESA_like_1 CESA_like_ 95.5 0.44 9.5E-06 41.0 13.0 197 33-253 26-229 (251)
20 cd04186 GT_2_like_c Subfamily 95.4 0.7 1.5E-05 36.3 13.3 85 131-246 71-156 (166)
21 cd02510 pp-GalNAc-T pp-GalNAc- 95.0 1.5 3.2E-05 39.2 15.4 130 124-253 73-225 (299)
22 PF00535 Glycos_transf_2: Glyc 94.8 0.48 1E-05 37.0 10.5 134 74-216 27-168 (169)
23 PF13506 Glyco_transf_21: Glyc 94.7 0.051 1.1E-06 45.3 4.8 128 119-248 16-147 (175)
24 cd04192 GT_2_like_e Subfamily 94.7 1 2.3E-05 37.6 12.9 155 75-237 29-190 (229)
25 PRK14583 hmsR N-glycosyltransf 94.3 2.2 4.9E-05 40.6 15.4 185 35-245 74-271 (444)
26 cd06421 CESA_CelA_like CESA_Ce 94.2 2.9 6.2E-05 35.1 15.4 125 126-254 76-212 (234)
27 cd06427 CESA_like_2 CESA_like_ 93.9 0.94 2E-05 38.9 11.2 119 124-245 74-202 (241)
28 TIGR03111 glyc2_xrt_Gpos1 puta 93.9 1.1 2.3E-05 42.8 12.4 129 123-254 120-268 (439)
29 cd06423 CESA_like CESA_like is 93.6 0.99 2.1E-05 35.2 10.1 95 123-217 67-170 (180)
30 cd06532 Glyco_transf_25 Glycos 93.3 0.89 1.9E-05 35.7 9.1 113 40-222 2-119 (128)
31 cd06433 GT_2_WfgS_like WfgS an 93.3 3.7 8E-05 33.2 14.5 116 123-244 64-183 (202)
32 cd04185 GT_2_like_b Subfamily 93.1 4.2 9.2E-05 33.5 13.7 104 123-254 69-174 (202)
33 cd04184 GT2_RfbC_Mx_like Myxoc 92.9 4.5 9.6E-05 33.1 15.5 116 124-247 73-193 (202)
34 cd06434 GT2_HAS Hyaluronan syn 92.9 2.1 4.6E-05 36.1 11.5 153 75-243 29-201 (235)
35 cd06435 CESA_NdvC_like NdvC_li 92.8 4 8.7E-05 34.5 13.2 116 124-245 72-199 (236)
36 cd06420 GT2_Chondriotin_Pol_N 92.4 4.8 0.0001 32.3 13.7 97 125-241 70-166 (182)
37 COG1215 Glycosyltransferases, 92.1 10 0.00022 35.3 16.1 198 35-251 53-263 (439)
38 PF04646 DUF604: Protein of un 91.9 0.25 5.4E-06 43.6 4.5 53 202-254 12-68 (255)
39 cd02526 GT2_RfbF_like RfbF is 91.8 7.1 0.00015 32.9 15.4 118 123-242 65-191 (237)
40 cd06437 CESA_CaSu_A2 Cellulose 91.7 7.4 0.00016 32.9 13.9 124 125-255 78-215 (232)
41 PF13632 Glyco_trans_2_3: Glyc 91.6 0.67 1.5E-05 38.2 6.8 115 137-255 1-126 (193)
42 cd04187 DPM1_like_bac Bacteria 91.6 0.86 1.9E-05 37.0 7.3 135 74-219 29-165 (181)
43 COG1216 Predicted glycosyltran 91.3 10 0.00023 34.0 15.6 145 102-252 55-219 (305)
44 cd04195 GT2_AmsE_like GT2_AmsE 91.0 5.6 0.00012 32.6 11.8 114 125-247 71-195 (201)
45 PF10111 Glyco_tranf_2_2: Glyc 89.1 16 0.00034 32.5 15.3 166 72-244 32-211 (281)
46 cd06442 DPM1_like DPM1_like re 88.3 13 0.00029 30.8 13.2 90 126-217 70-167 (224)
47 TIGR03030 CelA cellulose synth 87.1 9.5 0.00021 38.9 12.2 129 119-251 214-356 (713)
48 cd04188 DPG_synthase DPG_synth 86.3 13 0.00029 30.8 11.0 170 73-255 29-208 (211)
49 PRK10714 undecaprenyl phosphat 86.2 7.2 0.00016 35.6 10.0 135 74-219 38-175 (325)
50 cd04191 Glucan_BSP_ModH Glucan 86.0 10 0.00022 33.5 10.5 188 40-245 3-221 (254)
51 PRK14716 bacteriophage N4 adso 83.6 25 0.00054 34.4 12.8 107 134-245 158-279 (504)
52 cd02514 GT13_GLCNAC-TI GT13_GL 82.9 4.8 0.0001 37.2 7.2 91 125-230 88-185 (334)
53 TIGR01556 rhamnosyltran L-rham 81.5 32 0.00069 30.1 11.9 125 125-252 65-200 (281)
54 cd04179 DPM_DPG-synthase_like 81.1 15 0.00032 29.5 8.9 132 74-217 28-167 (185)
55 PRK11234 nfrB bacteriophage N4 77.0 62 0.0013 33.2 13.6 194 33-245 60-276 (727)
56 PLN02726 dolichyl-phosphate be 74.5 54 0.0012 28.0 12.8 155 74-243 40-206 (243)
57 cd06913 beta3GnTL1_like Beta 1 74.4 46 0.001 27.7 10.4 45 125-169 75-119 (219)
58 PRK10018 putative glycosyl tra 72.5 64 0.0014 28.8 11.2 36 124-159 75-110 (279)
59 cd02522 GT_2_like_a GT_2_like_ 72.3 54 0.0012 27.0 14.2 108 126-244 64-176 (221)
60 cd04190 Chitin_synth_C C-termi 67.5 7.5 0.00016 33.6 4.0 110 133-242 72-207 (244)
61 PRK05454 glucosyltransferase M 67.4 58 0.0013 33.2 10.8 199 30-245 118-346 (691)
62 PRK11498 bcsA cellulose syntha 63.6 1.3E+02 0.0028 31.6 12.5 117 125-245 330-459 (852)
63 PLN03181 glycosyltransferase; 58.2 57 0.0012 31.2 8.1 93 53-148 109-212 (453)
64 cd00761 Glyco_tranf_GTA_type G 56.8 77 0.0017 23.4 12.6 35 124-158 67-101 (156)
65 cd06438 EpsO_like EpsO protein 54.9 1.1E+02 0.0024 24.6 11.5 88 124-215 70-169 (183)
66 COG4092 Predicted glycosyltran 54.3 50 0.0011 29.8 6.7 80 72-157 36-117 (346)
67 PF13704 Glyco_tranf_2_4: Glyc 50.3 83 0.0018 22.6 6.6 47 103-151 41-88 (97)
68 PF03071 GNT-I: GNT-I family; 48.5 1.4E+02 0.003 28.7 9.2 116 93-218 136-271 (434)
69 PTZ00260 dolichyl-phosphate be 44.7 2.5E+02 0.0054 25.6 12.1 128 33-170 67-202 (333)
70 PHA01631 hypothetical protein 44.5 81 0.0018 26.2 6.0 92 102-219 39-133 (176)
71 PRK10073 putative glycosyl tra 40.1 2.9E+02 0.0062 25.1 12.9 76 74-159 35-110 (328)
72 PLN03182 xyloglucan 6-xylosylt 38.3 1.7E+02 0.0037 27.9 7.9 93 53-147 106-210 (429)
73 PF09258 Glyco_transf_64: Glyc 37.9 34 0.00074 30.1 3.2 99 134-239 75-181 (247)
74 cd06436 GlcNAc-1-P_transferase 32.4 24 0.00051 29.0 1.2 77 135-216 90-178 (191)
75 PF03452 Anp1: Anp1; InterPro 31.2 3.6E+02 0.0077 24.2 8.5 88 72-160 54-168 (269)
76 PF04666 Glyco_transf_54: N-Ac 27.6 2.2E+02 0.0048 25.8 6.7 19 134-152 169-187 (297)
77 PHA02688 ORF059 IMV protein VP 27.4 1.1E+02 0.0024 28.1 4.6 91 119-219 97-200 (323)
78 cd02511 Beta4Glucosyltransfera 25.4 92 0.002 26.3 3.8 37 123-159 60-96 (229)
79 PF05637 Glyco_transf_34: gala 25.3 89 0.0019 27.3 3.7 31 118-148 60-90 (239)
80 PF06306 CgtA: Beta-1,4-N-acet 24.8 96 0.0021 28.6 3.8 39 120-158 160-199 (347)
81 COG5454 Predicted secreted pro 23.7 43 0.00093 24.5 1.1 23 41-63 39-62 (89)
82 cd00218 GlcAT-I Beta1,3-glucur 23.6 3.1E+02 0.0067 23.9 6.6 36 123-159 81-119 (223)
83 PF13712 Glyco_tranf_2_5: Glyc 21.0 98 0.0021 26.5 3.0 31 123-153 43-73 (217)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-61 Score=443.47 Aligned_cols=259 Identities=48% Similarity=0.866 Sum_probs=224.5
Q ss_pred chhhhhhhhhhhhhcCC--CCCCCCC----CCCCCCCCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEE
Q 024690 3 KLLELEMQLAAAGQEGF--KSKGSTD----TDDKDPKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGII 76 (264)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~ 76 (264)
+++.|||.+|+|-+.++ .++..+. ..+...+++++|+|+|+|+|+|++||++||+||+++...+.+++...++.
T Consensus 100 ~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~ 179 (408)
T PLN03193 100 TISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGII 179 (408)
T ss_pred hhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEE
Confidence 68899999999999887 4332222 23556678899999999999999999999999999765444455567899
Q ss_pred EEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHH
Q 024690 77 TRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATL 156 (264)
Q Consensus 77 ~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L 156 (264)
++||+|++.+.++.++..|++|+++|||||++ ||.|+|.||+.||+++|+|+.++|+++|++|+|||+|||+++|+.+|
T Consensus 180 vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L 258 (408)
T PLN03193 180 IRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETL 258 (408)
T ss_pred EEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHH
Confidence 99999998753357888999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEEeecCcceecC-CCCcccCCccccC-CCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHH
Q 024690 157 ATHLDKPRVYIGCMKSGDVFSEP-GHKWYEPDWWKFG-DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAG 234 (264)
Q Consensus 157 ~~~~~~~~~y~G~~~~~~p~r~~-~~k~~vs~~~~~y-~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG 234 (264)
+.....+++|+|++..+ |+|++ ..||+.|++|++. +.+.|||||+|+|||||+++|+.|+.++..++.+++|||++|
T Consensus 259 ~~~~~~~rlYiG~m~~g-Pvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG 337 (408)
T PLN03193 259 VRHRKKPRVYIGCMKSG-PVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLG 337 (408)
T ss_pred HhcCCCCCEEEEecccC-ccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhh
Confidence 87766668999999766 56664 5667777777764 678999999999999999999999988889999999999999
Q ss_pred HHHhhCCCeEecCCCeeeCCCCC-------CCcccC
Q 024690 235 SWFLGLDVKYLNEGKFCCSSWSS-------GAICAG 263 (264)
Q Consensus 235 ~~l~~l~v~~~~~~~f~~~~~~~-------~~~~~~ 263 (264)
+|+.+++|+++|+.+||+.++.+ +++|+.
T Consensus 338 ~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~ 373 (408)
T PLN03193 338 SWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVA 373 (408)
T ss_pred hHhccCCceeeecccccCCCCccccccccCCCeeEE
Confidence 99999999999999999977544 888875
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-53 Score=388.40 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=196.4
Q ss_pred ceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCC
Q 024690 36 PLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAP 115 (264)
Q Consensus 36 ~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y 115 (264)
++++++|+|++++++||++||+|||++.. ..+.+++++|++|.+.+.+ .++..|.+|++.|||||+. ||.|+|
T Consensus 95 ~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~Dty 167 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFEDTY 167 (349)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-ecccch
Confidence 79999999999999999999999999874 2567899999999998643 5578999999999999987 999999
Q ss_pred CCchHHHHHHHHHHHhcC-CceeEEEecCeeEEeHHHHHHHHhcc-CCCCceEEEEeec-CcceecCCCCcccCCccccC
Q 024690 116 KEFPNKAKLFFAYAVDKW-DAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKFG 192 (264)
Q Consensus 116 ~nl~~K~~~~l~w~~~~~-~~~fvlk~DDD~~Vn~~~L~~~L~~~-~~~~~~y~G~~~~-~~p~r~~~~k~~vs~~~~~y 192 (264)
.|+|+|++++++|+.++| +++|++|+|||+|||+++|+++|... ++.+.+|+|.+.. ..|+|++.+|||+|+. .|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~--~y 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES--EY 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH--HC
Confidence 999999999999999986 69999999999999999999999998 7888999999754 5899999999999986 89
Q ss_pred CCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhC-CCeEecCCCeeeCCCCCCCcc
Q 024690 193 DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEGKFCCSSWSSGAIC 261 (264)
Q Consensus 193 ~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l-~v~~~~~~~f~~~~~~~~~~~ 261 (264)
|++.|||||+|+|||+|+++|+.|++++.+.+.+++|||++|+|+... ||.+++..+|.... ....+|
T Consensus 246 ~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~-~~~~~~ 314 (349)
T KOG2287|consen 246 PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP-LSFDPC 314 (349)
T ss_pred CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccccc-ccCCCC
Confidence 999999999999999999999999999999999999999999999877 99999998855544 344444
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1e-52 Score=405.10 Aligned_cols=220 Identities=25% Similarity=0.421 Sum_probs=194.4
Q ss_pred CCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCC
Q 024690 33 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 112 (264)
Q Consensus 33 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~ 112 (264)
.++++|+|+|+|+|+|++||++||+||++.... .+..++++|++|.+.+ +.++..|++|+++|||||+. ||.
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~-----~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF~ 453 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAV-----RSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PFV 453 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhcccccc-----CCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-eee
Confidence 457899999999999999999999999996531 3456899999999876 57788999999999999987 999
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeec-CcceecCCCCcccCCcccc
Q 024690 113 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKF 191 (264)
Q Consensus 113 D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~-~~p~r~~~~k~~vs~~~~~ 191 (264)
|+|+|||+|+++++.|+..+++++|+||+|||+|||+++|+++|+.......+|+|++.. .+|+|++.+|||+|.+ .
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~--e 531 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE--E 531 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH--H
Confidence 999999999999999998778999999999999999999999998776667899999864 5899999999999975 7
Q ss_pred CCCCCccccccCCceeecHHHHHHHHHhc--cccCCCCcchHHHHHHHh-----hCCCeEecCCCeeeCCCCCCCccc
Q 024690 192 GDKKLYFRHASGEMYVISRALAKFISINR--SILRTYAHDDVSAGSWFL-----GLDVKYLNEGKFCCSSWSSGAICA 262 (264)
Q Consensus 192 y~~~~yP~y~~G~gyvlS~~~v~~l~~~~--~~~~~~~~EDv~iG~~l~-----~l~v~~~~~~~f~~~~~~~~~~~~ 262 (264)
||.+.|||||+|+|||||+++|+.|+.++ ..+++|++|||++|+|+. ++.+.+.++.+|+..+|....+|+
T Consensus 532 yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~ 609 (636)
T PLN03133 532 WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVA 609 (636)
T ss_pred CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEE
Confidence 89999999999999999999999999864 578999999999999985 445677888999888876555543
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=5e-51 Score=347.34 Aligned_cols=191 Identities=26% Similarity=0.346 Sum_probs=171.5
Q ss_pred hHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHH
Q 024690 50 NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYA 129 (264)
Q Consensus 50 ~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~ 129 (264)
+||++||+||++.... ...+++++|++|.+.+.++.+++.|++|+++|||||+. ||.|+|.|+++|++++++|+
T Consensus 1 ~rR~~IR~TW~~~~~~-----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~ 74 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF-----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWA 74 (195)
T ss_pred ChHHHHHHHHhccccc-----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHH
Confidence 5899999999998742 35789999999999843356788899999999999987 99999999999999999999
Q ss_pred HhcCC-ceeEEEecCeeEEeHHHHHHHHhcc--CCCCceEEEE-eecCcceecCCCCcccCCccccCCCCCccccccCCc
Q 024690 130 VDKWD-AEYYAKVNDDVYVNIDSLGATLATH--LDKPRVYIGC-MKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 205 (264)
Q Consensus 130 ~~~~~-~~fvlk~DDD~~Vn~~~L~~~L~~~--~~~~~~y~G~-~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~g 205 (264)
.++|+ ++|++|+|||+|||+++|.++|... .+.++.+.|. ...++|+|++.+|||+|++ .||.+.|||||+|+|
T Consensus 75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~--~y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE--EYPDDYYPPYCSGGG 152 (195)
T ss_pred HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee--ecccccCCCcCCCCe
Confidence 99986 9999999999999999999999987 3334444454 5667899999999999986 789999999999999
Q ss_pred eeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEecCC
Q 024690 206 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEG 248 (264)
Q Consensus 206 yvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~~ 248 (264)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999875
No 5
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-48 Score=329.64 Aligned_cols=228 Identities=52% Similarity=1.009 Sum_probs=211.3
Q ss_pred CCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCC
Q 024690 33 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 112 (264)
Q Consensus 33 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~ 112 (264)
+++++++|+|.|++++..||+.+|+||+.....++++++..+|.++|++|.... +++.+.+|++|.++|+|.|.+++.+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~-g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATL-GASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCc-cHHHHHHHHHHHHhcCCeEeechhH
Confidence 779999999999999999999999999999766778888899999999999433 3688999999999999999995599
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccCCccccC
Q 024690 113 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFG 192 (264)
Q Consensus 113 D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y 192 (264)
|+|.+|+.||++++.++..+++++|++|+|||+|||+..|...|.....++++|+||++.++++.+|.+|||.|+ |++.
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999988889999999999999999999999999 6887
Q ss_pred CCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEecCCCeeeCCC--CCCCccc
Q 024690 193 DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSW--SSGAICA 262 (264)
Q Consensus 193 ~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~~~f~~~~~--~~~~~~~ 262 (264)
....|.+|+.|++|+||++++..|..+...+..+..|||.+|.|+.+++|+++|++|+|...+ ..+++|+
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~ 237 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCA 237 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceee
Confidence 654599999999999999999999999888999999999999999999999999999999998 6667665
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=6.8e-34 Score=257.70 Aligned_cols=192 Identities=18% Similarity=0.286 Sum_probs=157.8
Q ss_pred CCCCCceEEEEEECCCCC--hhHHHHHHHHhccCccccccccC-CCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeE
Q 024690 31 DPKKRPLVVIGILTRFGR--KNNRDAIRKAWMGTGAALKKREN-EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFI 107 (264)
Q Consensus 31 ~~~~~~~lli~V~S~~~~--~~rR~aIR~TW~~~~~~~~~l~~-~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~ 107 (264)
=.+++-.++++|+|..++ +.||++.|+||.+...+..+-++ ...+-++|++|.+++.+-+.+++|++|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 346788999999999988 89999999999998754222111 346778999999998655889999999999999998
Q ss_pred eCCC------------------CCCCCCchHHHHHHHHHHHhcC-CceeEEEecCeeEEeHHHHHHHHhccCCCCceEEE
Q 024690 108 LDHH------------------VEAPKEFPNKAKLFFAYAVDKW-DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIG 168 (264)
Q Consensus 108 ~~d~------------------~D~y~nl~~K~~~~l~w~~~~~-~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G 168 (264)
+ +| .|++.|+++||+++++|+...| +++||+|+|||+|||+++++++|+.. +...+|+|
T Consensus 155 l-pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 155 L-PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred E-ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 7 89 7777889999999999999997 89999999999999999999999775 55569999
Q ss_pred EeecC-cceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHhccc--c---------------CCCCcch
Q 024690 169 CMKSG-DVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSI--L---------------RTYAHDD 230 (264)
Q Consensus 169 ~~~~~-~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~--~---------------~~~~~ED 230 (264)
.+... .|.|+ .+||||+|+||+||+++|+.|+...+. + -.+..||
T Consensus 233 ~v~~~~~p~Rd-----------------~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~ED 295 (382)
T PTZ00210 233 RYNYYNRIWRR-----------------NQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYED 295 (382)
T ss_pred eeCCCCccccC-----------------CCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchH
Confidence 97532 33332 359999999999999999999975322 2 2367999
Q ss_pred HHHHHHHh-hCC
Q 024690 231 VSAGSWFL-GLD 241 (264)
Q Consensus 231 v~iG~~l~-~l~ 241 (264)
+++|.+++ +++
T Consensus 296 iMvG~vLr~~~k 307 (382)
T PTZ00210 296 VMVGMILREKVV 307 (382)
T ss_pred HHHHHHHHHhcC
Confidence 99999994 543
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.87 E-value=1.1e-21 Score=173.46 Aligned_cols=195 Identities=19% Similarity=0.212 Sum_probs=101.5
Q ss_pred ceEEEEEECCCCChh-HHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCC
Q 024690 36 PLVVIGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 114 (264)
Q Consensus 36 ~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~ 114 (264)
-+|+|+|+|++++.. |-.+|++||++.+.. ..++|. .. . +..|..+ ...+++ .+++...
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~~~ifs-d~-~------d~~l~~~--~~~~l~-~~~~~~~ 65 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------QTFIFS-DA-E------DPSLPTV--TGVHLV-NPNCDAG 65 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------GEEEEE-SS---------HHHHHH--HGGGEE-E------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------ceEEec-Cc-c------ccccccc--cccccc-cCCCcch
Confidence 468999999998664 558999999999742 222233 21 1 2334333 223444 4466665
Q ss_pred CCCchHHHHHHHHHHHhc-CCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccCCccccCC
Q 024690 115 PKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGD 193 (264)
Q Consensus 115 y~nl~~K~~~~l~w~~~~-~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~ 193 (264)
+....++.++.+.+-... .+.+|++++|||+||++++|.++|...++..++|+|+.....+..... + ..+.. .+
T Consensus 66 ~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~-~-~~~~~---~~ 140 (252)
T PF02434_consen 66 HCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIH-R-FNPNK---SK 140 (252)
T ss_dssp -------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeec-c-ccccc---cC
Confidence 555455555554443222 578999999999999999999999999999999999965433332210 0 00000 01
Q ss_pred CCCccccc-cCCceeecHHHHHHHHHhcc--c-cC----CCCcchHHHHHHHhh-CCCeEecCCCeeeCCCC
Q 024690 194 KKLYFRHA-SGEMYVISRALAKFISINRS--I-LR----TYAHDDVSAGSWFLG-LDVKYLNEGKFCCSSWS 256 (264)
Q Consensus 194 ~~~yP~y~-~G~gyvlS~~~v~~l~~~~~--~-~~----~~~~EDv~iG~~l~~-l~v~~~~~~~f~~~~~~ 256 (264)
...| .|+ +|+||+||+.++++|..... . .. .-..||+.+|.|+.. +||+.+|.+.||.+.+.
T Consensus 141 ~~~~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 141 DSGF-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp ------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred cCce-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 1223 456 56999999999999954221 1 11 124899999999988 99999999999999986
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.9e-16 Score=146.19 Aligned_cols=172 Identities=20% Similarity=0.294 Sum_probs=130.9
Q ss_pred CCCCCCCceEEEEEECCCCChhHH-HHHHHHhccCccccccccCCCcEEEEEEe---eecCCCCccchhhhHhHHhhCCC
Q 024690 29 DKDPKKRPLVVIGILTRFGRKNNR-DAIRKAWMGTGAALKKRENEKGIITRFVI---GRSANRGDSLDQDIDSENKQTND 104 (264)
Q Consensus 29 ~~~~~~~~~lli~V~S~~~~~~rR-~aIR~TW~~~~~~~~~l~~~~~v~~~Fvv---G~~~~~~~~~~~~l~~E~~~~~D 104 (264)
..--..+.+|++.|+|.+.+...| +.+-+||++.+.. ..|+- ++.. ..+.-
T Consensus 84 ~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~~ 138 (364)
T KOG2246|consen 84 ALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFPT 138 (364)
T ss_pred hhccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCce
Confidence 334466788999999998877655 6999999999842 33443 2222 22333
Q ss_pred eeEeCCCCCCCCCchHHHHHHHHHHHhc--CCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCC
Q 024690 105 FFILDHHVEAPKEFPNKAKLFFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHK 182 (264)
Q Consensus 105 Il~~~d~~D~y~nl~~K~~~~l~w~~~~--~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k 182 (264)
| .. +..|+|+++..|+..+++++.++ .+++|++|+|||||+.++||..+|..+++++++|+|+....
T Consensus 139 v-~~-~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~--------- 207 (364)
T KOG2246|consen 139 V-YY-NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS--------- 207 (364)
T ss_pred e-ec-cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc---------
Confidence 3 35 78999999999999999999976 58999999999999999999999999999999999995321
Q ss_pred cccCCccccCCCCCccccccCCceeecHHHHHHHHHh----ccccCC-C--CcchHHHHHHHhhCCCeEecC
Q 024690 183 WYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISIN----RSILRT-Y--AHDDVSAGSWFLGLDVKYLNE 247 (264)
Q Consensus 183 ~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~----~~~~~~-~--~~EDv~iG~~l~~l~v~~~~~ 247 (264)
+.. ..| .-+|+||++|+++.+.+++. ...++. . ..||.-||.|+..+||...+.
T Consensus 208 -~~~--------~~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 208 -YFQ--------NGY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred -ccc--------ccc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 111 111 13679999999999887763 222222 2 399999999999999998876
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.40 E-value=9.1e-12 Score=117.88 Aligned_cols=207 Identities=14% Similarity=0.068 Sum_probs=128.3
Q ss_pred hhhhhhhcCCCCCCCCCCCCCCCCCCceEEEEEECCCCCh-hHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCC
Q 024690 10 QLAAAGQEGFKSKGSTDTDDKDPKKRPLVVIGILTRFGRK-NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRG 88 (264)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~ 88 (264)
+++.++.++..+++.. ....+..--.|+++|.++.+.. +|+..|+.+|..... =..+|+.....+.
T Consensus 98 ~~~~~~~~~~~~~~~~--~~~~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~----------rg~v~ld~~~~~~- 164 (537)
T PLN03153 98 LLDHFRNRSLSEIERL--KVEAELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM----------RGHVWLEEQVSPE- 164 (537)
T ss_pred ccccccccccCCCCCc--ccCCCCccccEEEEEEEchhhhhhhhhhhhhhcCcccc----------eeEEEecccCCCC-
Confidence 3444455555553333 2333455667889999888766 566899999997531 1255665443321
Q ss_pred ccchhhhHhHHhhCCCeeEeCCCCCC----CCC---chHH--HHHHHHHHHh--cCCceeEEEecCeeEEeHHHHHHHHh
Q 024690 89 DSLDQDIDSENKQTNDFFILDHHVEA----PKE---FPNK--AKLFFAYAVD--KWDAEYYAKVNDDVYVNIDSLGATLA 157 (264)
Q Consensus 89 ~~~~~~l~~E~~~~~DIl~~~d~~D~----y~n---l~~K--~~~~l~w~~~--~~~~~fvlk~DDD~~Vn~~~L~~~L~ 157 (264)
.....|- -|- ++ .|+ |.| .... +..+...... .++++|++++|||||+.+++|+.+|.
T Consensus 165 -~~~~~~P-------~i~-is--~d~s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls 233 (537)
T PLN03153 165 -EGDDSLP-------PIM-VS--EDTSRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLS 233 (537)
T ss_pred -CCcCCCC-------CEE-eC--CCcccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHh
Confidence 0011110 111 11 111 222 2221 1112222222 37899999999999999999999999
Q ss_pred ccCCCCceEEEEeecCcceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHhcccc----CCCCcchHHH
Q 024690 158 THLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSIL----RTYAHDDVSA 233 (264)
Q Consensus 158 ~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~----~~~~~EDv~i 233 (264)
.++++++.|+|....... ... .+ .|--..+|+||+||+.+++.|....... +...-+|.-|
T Consensus 234 ~YDptkp~YIGs~Se~~~--------qn~----~f---~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL 298 (537)
T PLN03153 234 KYDPSEMVYVGGPSESHS--------ANS----YF---SHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRL 298 (537)
T ss_pred hcCCCCCEEecccccccc--------ccc----cc---ccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHH
Confidence 999999999998542210 000 00 1111237899999999999988743222 2234688899
Q ss_pred HHHHhhCCCeEecCCCeeeCCC
Q 024690 234 GSWFLGLDVKYLNEGKFCCSSW 255 (264)
Q Consensus 234 G~~l~~l~v~~~~~~~f~~~~~ 255 (264)
|.|+..+||...+.++|++...
T Consensus 299 ~~CL~elGV~LT~~~gfhQ~D~ 320 (537)
T PLN03153 299 HACITELGVPLSREPGFHQWDI 320 (537)
T ss_pred HHHHHHcCCCceecCCcccccc
Confidence 9999999999999999999874
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0004 Score=66.08 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHHHHHHhc--CCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccCCccccCCCCCcccc
Q 024690 123 KLFFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRH 200 (264)
Q Consensus 123 ~~~l~w~~~~--~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y 200 (264)
.+-++++.++ .+++|++-+-|++|||...|++++...+-+.++|+|.-..+ ....
T Consensus 84 s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~-------------------gs~r---- 140 (681)
T KOG3708|consen 84 SMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED-------------------GSGR---- 140 (681)
T ss_pred HHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC-------------------ccCc----
Confidence 4456777776 48999999999999999999999999888889999941100 0112
Q ss_pred cc-CCceeecHHHHHHHHHhccccCCC---CcchHHHHHHHh---hCCCeEec
Q 024690 201 AS-GEMYVISRALAKFISINRSILRTY---AHDDVSAGSWFL---GLDVKYLN 246 (264)
Q Consensus 201 ~~-G~gyvlS~~~v~~l~~~~~~~~~~---~~EDv~iG~~l~---~l~v~~~~ 246 (264)
|. |.||+||+.++.+|-.+-.-++-+ .=+|+++|.|+. +++.++.|
T Consensus 141 C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~h 193 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLH 193 (681)
T ss_pred cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchh
Confidence 75 699999999999998764333222 356799999996 44545544
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.21 E-value=0.013 Score=49.68 Aligned_cols=187 Identities=13% Similarity=0.033 Sum_probs=87.1
Q ss_pred eEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCe--eEeCCCCCC
Q 024690 37 LVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDF--FILDHHVEA 114 (264)
Q Consensus 37 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DI--l~~~d~~D~ 114 (264)
.+.|+|++.-....-++.|+.--.+.. ..+.++++...++. +..+.+++-...++.. -++ ..
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~---------~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~v~vi----~~ 65 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDY---------PRLEVVVVDDGSDD---ETAEILRALAARYPRVRVRVI----RR 65 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHH---------HTEEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEE----E-
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCC---------CCeEEEEEECCCCh---HHHHHHHHHHHHcCCCceEEe----ec
Confidence 466667765544444555555543211 23566666644332 3344555555566653 222 11
Q ss_pred CCCch--HHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhcc-CCCCceEEEEee--cCcceecCCC-----Ccc
Q 024690 115 PKEFP--NKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMK--SGDVFSEPGH-----KWY 184 (264)
Q Consensus 115 y~nl~--~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~-~~~~~~y~G~~~--~~~p~r~~~~-----k~~ 184 (264)
-.|.. .|. .++.++.+..+.+|++.+|||+.+.++-|...+... .+.-....|... .+...-.... .|+
T Consensus 66 ~~~~g~~~k~-~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (228)
T PF13641_consen 66 PRNPGPGGKA-RALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWH 144 (228)
T ss_dssp ---HHHHHHH-HHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EET
T ss_pred CCCCCcchHH-HHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhh
Confidence 13322 233 355777777789999999999999998888877776 333333334332 1110000001 111
Q ss_pred cCCccccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEe
Q 024690 185 EPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 185 vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
.... ......=-.++.|++.++.+++++.+-.... ....||..++..+...|.+..
T Consensus 145 ~~~~--~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~ 200 (228)
T PF13641_consen 145 LRFR--SGRRALGVAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIV 200 (228)
T ss_dssp TTS---TT-B----S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EE
T ss_pred hhhh--hhhcccceeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEE
Confidence 1100 0000111145689999999999999863222 444699999988876664433
No 12
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.94 E-value=0.031 Score=52.05 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=100.2
Q ss_pred CceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCC--eeEeCCCC
Q 024690 35 RPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTND--FFILDHHV 112 (264)
Q Consensus 35 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~D--Il~~~d~~ 112 (264)
.+.+-|+|++.-....-.+.|+ +..++. -..++++++...+++ ...+.+++=.+.|.+ |..+.+ .
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~~-~ 106 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVID-A 106 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEEC-C
Confidence 4456666665544333445554 333332 123778887665543 222333332355665 422211 1
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccC-----C
Q 024690 113 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP-----D 187 (264)
Q Consensus 113 D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs-----~ 187 (264)
+ -.....|.-...+ +.+..+.+|++.+|+|+.+.++-|...+......+--.+++.....+ ...|... .
T Consensus 107 ~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~----~~~~~~~l~~~~~ 180 (373)
T TIGR03472 107 R-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRP----VPGFWSRLGAMGI 180 (373)
T ss_pred C-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCC----CCCHHHHHHHHHh
Confidence 1 1222356655444 45667899999999999999999888877763211112222111111 0111100 0
Q ss_pred ccccCCC------CCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEe
Q 024690 188 WWKFGDK------KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 188 ~~~~y~~------~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
.+.++|. ..-+.+|.|+++++.+++.+.+---.. ....-.||..+|.-+...|.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~-~~~~~~ED~~l~~~i~~~G~~v~ 243 (373)
T TIGR03472 181 NHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGLRVV 243 (373)
T ss_pred hhhhhHHHHHHHhccCCccccChhhheeHHHHHHcCChHH-hcccchHHHHHHHHHHHcCCeEE
Confidence 0001110 012356889999999999998853211 12223699999999887765443
No 13
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.40 E-value=0.045 Score=46.07 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=52.6
Q ss_pred EEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeC----CCCCCC
Q 024690 40 IGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILD----HHVEAP 115 (264)
Q Consensus 40 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~----d~~D~y 115 (264)
|.|.|-+...+||+.+.+...... +.+-|+-|-.... ... .+....++.-.... ...-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~~-----------~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKLG-----------INFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcC-----------CceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 456778888999999988876553 3455666654431 111 11111121111000 001111
Q ss_pred CCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHH
Q 024690 116 KEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID 150 (264)
Q Consensus 116 ~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~ 150 (264)
-.-.+-.+..++-+.+. +.++++-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11144567777777764 57899999999999865
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=96.39 E-value=0.3 Score=40.62 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCC--CeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTN--DFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 151 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~--DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~ 151 (264)
.+.+++|...+.+ ...+.+++-.+.+. ++.++ ....+ .....|.- .+..+.++...+|++..|+|+.+.++.
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~-~~~~~-~g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLL-IGGEK-VGINPKVN-NLIKGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEE-ecCCc-CCCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhH
Confidence 3678888766654 33444554445555 33222 11111 12223433 345556667899999999999998888
Q ss_pred HHHHHhccCCCCceEEEEeecCcceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchH
Q 024690 152 LGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDV 231 (264)
Q Consensus 152 L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv 231 (264)
|...+..... +. +|.+. +.++.|++.++.+++.+.+--.. .......||.
T Consensus 104 l~~l~~~~~~-~~--~~~v~--------------------------~~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~ 153 (196)
T cd02520 104 LRRMVAPLMD-PG--VGLVT--------------------------CLCAFGKSMALRREVLDAIGGFE-AFADYLAEDY 153 (196)
T ss_pred HHHHHHHhhC-CC--CCeEE--------------------------eecccCceeeeEHHHHHhccChH-HHhHHHHHHH
Confidence 8877765421 11 12211 00577899999999998875321 1122336999
Q ss_pred HHHHHHhhCCCeEe
Q 024690 232 SAGSWFLGLDVKYL 245 (264)
Q Consensus 232 ~iG~~l~~l~v~~~ 245 (264)
.++.-+...|.+..
T Consensus 154 ~l~~rl~~~G~~i~ 167 (196)
T cd02520 154 FLGKLIWRLGYRVV 167 (196)
T ss_pred HHHHHHHHcCCeEE
Confidence 99988876664443
No 15
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=96.21 E-value=0.27 Score=45.97 Aligned_cols=194 Identities=15% Similarity=0.071 Sum_probs=95.9
Q ss_pred CCCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCC---CeeEe
Q 024690 32 PKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTN---DFFIL 108 (264)
Q Consensus 32 ~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~---DIl~~ 108 (264)
+...+.+-|+|++.-+...-.+.|+.--.+.. ....++++|...+.+ ...+.+++-.+.+. .+.++
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~y--------p~~~eIIVVDd~StD---~T~~i~~~~~~~~~~~~~i~vi 104 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQDY--------PGKLHVILVDDHSTD---GTADIARAAARAYGRGDRLTVV 104 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhCCC--------CCceEEEEEeCCCCC---cHHHHHHHHHHhcCCCCcEEEe
Confidence 34455677777755543333344443322211 124677877766554 22222222223343 44444
Q ss_pred CCCCCCCCCchHHHH---HHHHHHHhc-CCceeEEEecCeeEEeHHHHHHHHhccCCCC-ceEEEEeecCcceecCCCCc
Q 024690 109 DHHVEAPKEFPNKAK---LFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKP-RVYIGCMKSGDVFSEPGHKW 183 (264)
Q Consensus 109 ~d~~D~y~nl~~K~~---~~l~w~~~~-~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~-~~y~G~~~~~~p~r~~~~k~ 183 (264)
...+.-.+-..|.. .+++.+.+. .+.+|++.+|+|+.+.++.|.+.+......+ .+..|...... .....+.
T Consensus 105 -~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~ 181 (384)
T TIGR03469 105 -SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKL 181 (384)
T ss_pred -cCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHH
Confidence 22221122234432 344444433 2389999999999999988888876653222 23222221100 0000000
Q ss_pred cc-----------CCccccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC
Q 024690 184 YE-----------PDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 241 (264)
Q Consensus 184 ~v-----------s~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~ 241 (264)
.. +..| .........++.|++.++++++.+++--... ......||+.++.-+++.|
T Consensus 182 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~-~~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 182 LIPAFVFFFQKLYPFRW-VNDPRRRTAAAAGGCILIRREALERIGGIAA-IRGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHHHHHHHHHhcchhh-hcCCCccceeecceEEEEEHHHHHHcCCHHH-HhhCcccHHHHHHHHHHcC
Confidence 00 0000 0001112345679999999999998842211 1122479999998887665
No 16
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.65 E-value=0.26 Score=40.89 Aligned_cols=180 Identities=14% Similarity=0.036 Sum_probs=91.2
Q ss_pred HHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCC-CeeEeCCCCCCCCCchHHHHHHHHHHHh
Q 024690 53 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTN-DFFILDHHVEAPKEFPNKAKLFFAYAVD 131 (264)
Q Consensus 53 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~-DIl~~~d~~D~y~nl~~K~~~~l~w~~~ 131 (264)
+.|.+++.+.... ....+.++++...+.+ ...+.+++-..+++ .+..+ ....+ .. ....+.....
T Consensus 11 ~~l~~~l~sl~~q-----~~~~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~-~~~~~-~G----~~~~~n~g~~ 76 (214)
T cd04196 11 KYLREQLDSILAQ-----TYKNDELIISDDGSTD---GTVEIIKEYIDKDPFIIILI-RNGKN-LG----VARNFESLLQ 76 (214)
T ss_pred HHHHHHHHHHHhC-----cCCCeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEE-eCCCC-cc----HHHHHHHHHH
Confidence 4566666554321 1125677777655443 33334444344443 33322 12221 12 1333444456
Q ss_pred cCCceeEEEecCeeEEeHHHHHHHHhc-cC-CCCceEEEEee---c-CcceecCCCCcccCCccccCCCCCccccccCCc
Q 024690 132 KWDAEYYAKVNDDVYVNIDSLGATLAT-HL-DKPRVYIGCMK---S-GDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 205 (264)
Q Consensus 132 ~~~~~fvlk~DDD~~Vn~~~L~~~L~~-~~-~~~~~y~G~~~---~-~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~g 205 (264)
....+|++..|+|..+.++.|...+.. .. +...++.|... . +.+.....-..........+.......++.|++
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCT 156 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCce
Confidence 678999999999999998888888876 22 23334444321 1 111110000000000000000112235667899
Q ss_pred eeecHHHHHHHHHhccccCCCCcchHHHHHHHhhC-CCeEecCC
Q 024690 206 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEG 248 (264)
Q Consensus 206 yvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l-~v~~~~~~ 248 (264)
+++.+++++.+....... ...||.++...+... .+..++..
T Consensus 157 ~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~ 198 (214)
T cd04196 157 MAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEP 198 (214)
T ss_pred eeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchh
Confidence 999999999886432222 457898887666544 34444443
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.63 E-value=0.72 Score=39.15 Aligned_cols=170 Identities=8% Similarity=-0.055 Sum_probs=86.8
Q ss_pred CcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHH
Q 024690 73 KGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 152 (264)
Q Consensus 73 ~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L 152 (264)
..++++.+.+.+.+ ...+.++...+++..+.++ .-.. ... -.++....+..+.+|++.+|+|..+.++.|
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i-~~~~--~~~----~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l 99 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLI-DNPK--RIQ----SAGLNIGIRNSRGDIIIRVDAHAVYPKDYI 99 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEE-eCCC--CCc----hHHHHHHHHHhCCCEEEEECCCccCCHHHH
Confidence 35677777655543 3344444444444445444 2111 111 235666666668899999999999998888
Q ss_pred HHHHhccCCCC-ceEEEEeec--Ccceec-----CCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHhccccC
Q 024690 153 GATLATHLDKP-RVYIGCMKS--GDVFSE-----PGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILR 224 (264)
Q Consensus 153 ~~~L~~~~~~~-~~y~G~~~~--~~p~r~-----~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~ 224 (264)
...+......+ ....|.... ..+... ..+.+.....+........-.++.|++.++++++.+.+.-... .
T Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 177 (249)
T cd02525 100 LELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDE--S 177 (249)
T ss_pred HHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCc--c
Confidence 88776543222 333444321 111100 0000000000000000000125678888999999887743222 2
Q ss_pred CCCcchHHHHHHHhhCCCeEe--cCCCeeeCC
Q 024690 225 TYAHDDVSAGSWFLGLDVKYL--NEGKFCCSS 254 (264)
Q Consensus 225 ~~~~EDv~iG~~l~~l~v~~~--~~~~f~~~~ 254 (264)
....||..++.-+...|.+.. .+...++..
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIWLSPDIRVYYYP 209 (249)
T ss_pred cCccchhHHHHHHHHcCcEEEEcCCeEEEEcC
Confidence 234799999877766654444 344444433
No 18
>PRK11204 N-glycosyltransferase; Provisional
Probab=95.59 E-value=1.3 Score=41.66 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=100.9
Q ss_pred CCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCC
Q 024690 33 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 112 (264)
Q Consensus 33 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~ 112 (264)
.+.+.+-|+|++--+. +.|+++-.+-... .....+++.+...+. +...+.+++..+++..+..+ ..
T Consensus 51 ~~~p~vsViIp~yne~----~~i~~~l~sl~~q-----~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i-~~- 116 (420)
T PRK11204 51 KEYPGVSILVPCYNEG----ENVEETISHLLAL-----RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVI-HL- 116 (420)
T ss_pred CCCCCEEEEEecCCCH----HHHHHHHHHHHhC-----CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEE-Ec-
Confidence 3445677777765443 3344444332110 012345554443332 23344555555666666555 22
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCC---CcccCCcc
Q 024690 113 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGH---KWYEPDWW 189 (264)
Q Consensus 113 D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~---k~~vs~~~ 189 (264)
..|.. | -.+++.+.++.+.+|++..|+|+.+.++.|.+.++.....+.+ |.+....-+++..+ +....+..
T Consensus 117 --~~n~G-k-a~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~~~~~~~~~~~~~ 190 (420)
T PRK11204 117 --AENQG-K-ANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRSTLLGRIQVGEFS 190 (420)
T ss_pred --CCCCC-H-HHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccchhHHHHHHHHHHH
Confidence 22322 3 3456666777889999999999999999888888765322222 22221111111110 00000000
Q ss_pred ccC-------CCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCC--eEecCCCeee
Q 024690 190 KFG-------DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV--KYLNEGKFCC 252 (264)
Q Consensus 190 ~~y-------~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v--~~~~~~~f~~ 252 (264)
... .....+..++|++.++.+++++.+---. +..-.||+.++.-+...|. ...++..-.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~ 259 (420)
T PRK11204 191 SIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRGWDIRYEPRALCWI 259 (420)
T ss_pred HhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcCCeEEeccccEEEe
Confidence 000 0001122357888999999998764221 1234799999988876654 4444443333
No 19
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=95.46 E-value=0.44 Score=40.97 Aligned_cols=197 Identities=15% Similarity=0.060 Sum_probs=95.6
Q ss_pred CCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCC
Q 024690 33 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 112 (264)
Q Consensus 33 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~ 112 (264)
.....+-|+|++.-....-...|+.-..+.. ....+.++++...+.+ ...+.+.+..+. .+.++ ...
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~d---~t~~~~~~~~~~--~v~~i-~~~ 92 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGSTD---GTAEIAREYADK--GVKLL-RFP 92 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCCc---cHHHHHHHHhhC--cEEEE-EcC
Confidence 3444566666665544344556666554332 1223566666544432 223333222222 23333 111
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccC-CCCceEEEEeecCcce-ecCCCCcc--cCCc
Q 024690 113 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDVF-SEPGHKWY--EPDW 188 (264)
Q Consensus 113 D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~-~~~~~y~G~~~~~~p~-r~~~~k~~--vs~~ 188 (264)
+ | ..| -.++....++...+|++.+|+|+.+..+-|.+.+.... +...+..|......+. .......+ ....
T Consensus 93 ~---~-~g~-~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (251)
T cd06439 93 E---R-RGK-AAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENW 167 (251)
T ss_pred C---C-CCh-HHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHH
Confidence 1 2 122 23455555566679999999999999888888777764 2223444443211110 00000000 0000
Q ss_pred cc-cCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCC--eEecCCCeeeC
Q 024690 189 WK-FGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV--KYLNEGKFCCS 253 (264)
Q Consensus 189 ~~-~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v--~~~~~~~f~~~ 253 (264)
+. .......+..+.|+++++.+++.+ ........||..++..+...|. ...+....++.
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~ 229 (251)
T cd06439 168 LKRAESRLGSTVGANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAVAYEE 229 (251)
T ss_pred HHHHHHhcCCeeeecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccEEEEe
Confidence 00 000112234467777777777666 1112234799999988876664 44444444433
No 20
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.44 E-value=0.7 Score=36.31 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=55.6
Q ss_pred hcCCceeEEEecCeeEEeHHHHHHHHhccCCCCce-EEEEeecCcceecCCCCcccCCccccCCCCCccccccCCceeec
Q 024690 131 DKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVIS 209 (264)
Q Consensus 131 ~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~-y~G~~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS 209 (264)
+..+.+|++..|||..+.++.+...+......+.. .++.. +.|++.+++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~ 120 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLVR 120 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEeee
Confidence 33478999999999999998888887654322211 11110 678899999
Q ss_pred HHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEec
Q 024690 210 RALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLN 246 (264)
Q Consensus 210 ~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~ 246 (264)
+++++.+-.-...... ..||..+..-+...|.+...
T Consensus 121 ~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~ 156 (166)
T cd04186 121 REVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLY 156 (166)
T ss_pred HHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEE
Confidence 9988876432222222 57999888766655544443
No 21
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=95.02 E-value=1.5 Score=39.22 Aligned_cols=130 Identities=10% Similarity=0.072 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCc-eEEEEeec--Cccee--cCC------------CCcccC
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR-VYIGCMKS--GDVFS--EPG------------HKWYEP 186 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~-~y~G~~~~--~~p~r--~~~------------~k~~vs 186 (264)
.+..........+|++..|+|+.+.++-|..++......+. +..|.+.. +.-.+ ... ..|...
T Consensus 73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (299)
T cd02510 73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPL 152 (299)
T ss_pred HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccC
Confidence 44555555667899999999999998887777765533222 22222210 00000 000 011100
Q ss_pred -Ccc---ccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCeeeC
Q 024690 187 -DWW---KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCS 253 (264)
Q Consensus 187 -~~~---~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~ 253 (264)
..+ ...+.....++++|+++++++++.+.+---.+.......||+-+..-+...| +....+.+..|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~ 225 (299)
T cd02510 153 PEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHI 225 (299)
T ss_pred CHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEe
Confidence 000 0000123345778999999999999885433344444579998875555444 545455544443
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.83 E-value=0.48 Score=37.02 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
.++++++-..+.+ ...+.+++-.+....+.++ ... .|. -.-.++..+.++...+|++.+|||.++..+.|.
T Consensus 27 ~~eiivvdd~s~d---~~~~~~~~~~~~~~~i~~i-~~~---~n~--g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~ 97 (169)
T PF00535_consen 27 DFEIIVVDDGSTD---ETEEILEEYAESDPNIRYI-RNP---ENL--GFSAARNRGIKHAKGEYILFLDDDDIISPDWLE 97 (169)
T ss_dssp EEEEEEEECS-SS---SHHHHHHHHHCCSTTEEEE-EHC---CCS--HHHHHHHHHHHH--SSEEEEEETTEEE-TTHHH
T ss_pred CEEEEEecccccc---ccccccccccccccccccc-ccc---ccc--cccccccccccccceeEEEEeCCCceEcHHHHH
Confidence 3566666555432 3344444333324444444 222 232 133444555555666799999999999988777
Q ss_pred HHHhccCC-CCceEEEEee---cC-cceecCCC--CcccC-CccccCCCCCccccccCCceeecHHHHHHH
Q 024690 154 ATLATHLD-KPRVYIGCMK---SG-DVFSEPGH--KWYEP-DWWKFGDKKLYFRHASGEMYVISRALAKFI 216 (264)
Q Consensus 154 ~~L~~~~~-~~~~y~G~~~---~~-~p~r~~~~--k~~vs-~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l 216 (264)
.+++.... .....+|... .. ........ .+... ..........--.++.|++.++++++.+++
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 98 ELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 66665543 3345555532 11 11111111 01110 000011122334678899999999998764
No 23
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=94.73 E-value=0.051 Score=45.32 Aligned_cols=128 Identities=14% Similarity=-0.033 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCC-CCceEEEEeecCcceecCCCC---cccCCccccCCC
Q 024690 119 PNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMKSGDVFSEPGHK---WYEPDWWKFGDK 194 (264)
Q Consensus 119 ~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~-~~~~y~G~~~~~~p~r~~~~k---~~vs~~~~~y~~ 194 (264)
..|+-..+..+....+.++++..|+|+.|+++-|...+..... .-.+. .++....|.+.-.+. -++.-...++..
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglV-t~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 94 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLV-TGLPRGVPARGFWSRLEAAFFNFLPGVLQA 94 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEE-EecccccCCcCHHHHHHHHHHhHHHHHHHH
Confidence 4677666666554468999999999999999999888877643 22222 222111111110000 011000000000
Q ss_pred CCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEecCC
Q 024690 195 KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEG 248 (264)
Q Consensus 195 ~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~~ 248 (264)
-.-.++|.|+++++.+++++.+-- ...+...--||..+|..+...|.+..-.+
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred hcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 124678999999999999987731 12223355899999999988877666444
No 24
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.70 E-value=1 Score=37.58 Aligned_cols=155 Identities=11% Similarity=-0.075 Sum_probs=79.4
Q ss_pred EEEEEEeeecCCCCccchhhhH-hHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 75 IITRFVIGRSANRGDSLDQDID-SENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 75 v~~~FvvG~~~~~~~~~~~~l~-~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
+.++.|...+.+ ...+.++ .....+..+..+ .... -.| ..|. .++.+..+++..+|++.+|+|..+.++.|.
T Consensus 29 ~eiivvdd~s~d---~t~~~~~~~~~~~~~~v~~~-~~~~-~~~-~g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILEFAAAKPNFQLKIL-NNSR-VSI-SGKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHHHHHhCCCcceEEe-eccC-ccc-chhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 667766655433 2233343 112223344444 2222 122 2233 345666677889999999999999988888
Q ss_pred HHHhccCC-CCceEEEEeecCcc---e-ecCCCCcccCC-ccccCCCCCccccccCCceeecHHHHHHHHHhccccCCCC
Q 024690 154 ATLATHLD-KPRVYIGCMKSGDV---F-SEPGHKWYEPD-WWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYA 227 (264)
Q Consensus 154 ~~L~~~~~-~~~~y~G~~~~~~p---~-r~~~~k~~vs~-~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~ 227 (264)
..+..... ....+.|......+ . +-..-.+.... .........+|..+.|+++++++++.+.+---... ....
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~ 180 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIA 180 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-cccc
Confidence 88875432 22344554321100 0 00000000000 00000112456677899999999999988543222 2344
Q ss_pred cchHHHHHHH
Q 024690 228 HDDVSAGSWF 237 (264)
Q Consensus 228 ~EDv~iG~~l 237 (264)
.||..++.-+
T Consensus 181 ~eD~~~~~~~ 190 (229)
T cd04192 181 SGDDELLLAK 190 (229)
T ss_pred cCCHHHHHHH
Confidence 6777666544
No 25
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=94.27 E-value=2.2 Score=40.61 Aligned_cols=185 Identities=14% Similarity=0.119 Sum_probs=98.7
Q ss_pred CceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCC
Q 024690 35 RPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 114 (264)
Q Consensus 35 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~ 114 (264)
.+.+-|+|++.-+...-++.|+.- .++. ..+.+++++...+++ ...+.+++..+++..+.++ ...
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sl-l~q~--------yp~~eIivVdDgs~D---~t~~~~~~~~~~~~~v~vv-~~~-- 138 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAA-LAQT--------YTNIEVIAINDGSSD---DTAQVLDALLAEDPRLRVI-HLA-- 138 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHH-HcCC--------CCCeEEEEEECCCCc---cHHHHHHHHHHhCCCEEEE-EeC--
Confidence 455667777665443333444322 2221 124666666544432 3344555555666665544 211
Q ss_pred CCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCC---CCcccCCcc--
Q 024690 115 PKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPG---HKWYEPDWW-- 189 (264)
Q Consensus 115 y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~---~k~~vs~~~-- 189 (264)
.|. .| -.+++....+.+.+|++..|.|+.+..+.|...+......++ .|.+...+.++++. ++....+..
T Consensus 139 -~n~-Gk-a~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~ 213 (444)
T PRK14583 139 -HNQ-GK-AIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSI 213 (444)
T ss_pred -CCC-CH-HHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHH
Confidence 222 23 345677677788999999999999999988888765432222 23332211112111 111100000
Q ss_pred --------ccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEe
Q 024690 190 --------KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 190 --------~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
..+ .-+..++|++.++.+++++.+--... ..-.||..+|.-+...|.+..
T Consensus 214 ~~~~~~~~~~~---g~~~~~sG~~~~~rr~al~~vGg~~~---~~i~ED~dl~~rl~~~G~~i~ 271 (444)
T PRK14583 214 IGLIKRTQRVY---GQVFTVSGVVAAFRRRALADVGYWSP---DMITEDIDISWKLQLKHWSVF 271 (444)
T ss_pred HHHHHHHHHHh---CCceEecCceeEEEHHHHHHcCCCCC---CcccccHHHHHHHHHcCCeEE
Confidence 011 11223578889999999887742221 234699999988876665443
No 26
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=94.25 E-value=2.9 Score=35.13 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=70.5
Q ss_pred HHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCce--EEEEee--cCcc----eecCC--CCcccCCccccCCCC
Q 024690 126 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMK--SGDV----FSEPG--HKWYEPDWWKFGDKK 195 (264)
Q Consensus 126 l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~--~~~p----~r~~~--~k~~vs~~~~~y~~~ 195 (264)
+..+.+..+.+|++.+|+|+++.++.|...+......+.. ..|... .... .+... ...+.... ......
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 154 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVI-QPGRDR 154 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHH-HHHHhh
Confidence 4444555678999999999999999888888766432322 222211 1110 00000 00000000 000001
Q ss_pred CccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCeeeCC
Q 024690 196 LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCSS 254 (264)
Q Consensus 196 ~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~~ 254 (264)
....++.|++.++++++++.+..-. .....||..++.-+...| +..+++....+..
T Consensus 155 ~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 155 WGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred cCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccccccC
Confidence 2245678999999999998875321 224479999998776554 5555666555444
No 27
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=93.91 E-value=0.94 Score=38.93 Aligned_cols=119 Identities=8% Similarity=-0.003 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCC-Cce-EEEE-eecCcceecCCCCcccCCcccc-------CC
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDK-PRV-YIGC-MKSGDVFSEPGHKWYEPDWWKF-------GD 193 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~-~~~-y~G~-~~~~~p~r~~~~k~~vs~~~~~-------y~ 193 (264)
.+++...++.+.+|++.+|+|+.+.++.|.+.+...... +.+ ++|. +...........+.+..+.+.. ..
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788999999999999999999888776432 232 2222 2111000000001000000000 00
Q ss_pred CCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEe
Q 024690 194 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 194 ~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
....+..++|++.++++++++.+--... ....||..++.-+...|.+..
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~ 202 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTG 202 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEE
Confidence 1123345688899999999988753221 234799999987766654443
No 28
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=93.90 E-value=1.1 Score=42.81 Aligned_cols=129 Identities=10% Similarity=0.066 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCce--EEEEeecCc-ceecCCCC--cccCCc-cccC----
Q 024690 123 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGD-VFSEPGHK--WYEPDW-WKFG---- 192 (264)
Q Consensus 123 ~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~~~~-p~r~~~~k--~~vs~~-~~~y---- 192 (264)
-.+++++.++.+.+|++..|+|..+.++.|.+.++.....+.+ ..|.+...+ ......+. +..... +-.|
T Consensus 120 a~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 199 (439)
T TIGR03111 120 AKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAF 199 (439)
T ss_pred HHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHH
Confidence 3456777777889999999999999999998888765433332 234432211 00000000 011100 0000
Q ss_pred -------CCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHh---hCCCeEecCCCeeeCC
Q 024690 193 -------DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFL---GLDVKYLNEGKFCCSS 254 (264)
Q Consensus 193 -------~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~---~l~v~~~~~~~f~~~~ 254 (264)
....-+..++|++.++.++++.++---.. ..-.||..++.-+. +-.+....+..+.+..
T Consensus 200 l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~---~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~ 268 (439)
T TIGR03111 200 LAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNS---ETVGEDTDMTFQIRELLDGKVYLCENAIFYVDP 268 (439)
T ss_pred HhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCC---CCcCccHHHHHHHHHhcCCeEEECCCCEEEEEC
Confidence 00112234678888999998877532111 12389999986553 2234555556555544
No 29
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=93.64 E-value=0.99 Score=35.16 Aligned_cols=95 Identities=8% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCC--ceEEEEeecC----cceecCC-CCcccCCcc--ccCC
Q 024690 123 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKP--RVYIGCMKSG----DVFSEPG-HKWYEPDWW--KFGD 193 (264)
Q Consensus 123 ~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~--~~y~G~~~~~----~p~r~~~-~k~~vs~~~--~~y~ 193 (264)
...+.++.+..+.+|++.+|+|..+..+.|..++......+ ....|..... ....... .++...... ....
T Consensus 67 ~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
T cd06423 67 AGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQS 146 (180)
T ss_pred hHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhh
Confidence 35556666667899999999999998887777745443222 2333332211 1111100 000000000 0000
Q ss_pred CCCccccccCCceeecHHHHHHHH
Q 024690 194 KKLYFRHASGEMYVISRALAKFIS 217 (264)
Q Consensus 194 ~~~yP~y~~G~gyvlS~~~v~~l~ 217 (264)
....+.++.|.+++++++++..+-
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 147 ALGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred eecceeecCchHHHHHHHHHHHhC
Confidence 123456788999999999998765
No 30
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=93.32 E-value=0.89 Score=35.68 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=66.7
Q ss_pred EEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHh-----hCCCeeEeCCCCCC
Q 024690 40 IGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENK-----QTNDFFILDHHVEA 114 (264)
Q Consensus 40 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~-----~~~DIl~~~d~~D~ 114 (264)
+.|.|-+...+||+.+++...... +.+-|+-|-.... .....+..... .++--+ .-+
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~~-----------~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l-----~~g 63 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAALG-----------LDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPL-----TPG 63 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcC-----------CCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCC-----Chh
Confidence 356778888899999998554432 3455665554331 11111211111 111111 111
Q ss_pred CCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccCCccccCCC
Q 024690 115 PKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDK 194 (264)
Q Consensus 115 y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~~ 194 (264)
--.-.+..+..|+-+.+. +.++.+-..||+.+..+
T Consensus 64 EiGC~lSH~~~w~~~~~~-~~~~alIlEDDv~~~~~-------------------------------------------- 98 (128)
T cd06532 64 EIGCFLSHYKLWQKIVES-NLEYALILEDDAILDPD-------------------------------------------- 98 (128)
T ss_pred hHHHHHHHHHHHHHHHHc-CCCeEEEEccCcEECCC--------------------------------------------
Confidence 112234456666666654 55789999999998766
Q ss_pred CCccccccCCceeecHHHHHHHHHhccc
Q 024690 195 KLYFRHASGEMYVISRALAKFISINRSI 222 (264)
Q Consensus 195 ~~yP~y~~G~gyvlS~~~v~~l~~~~~~ 222 (264)
+..||++|+..+++|+.....
T Consensus 99 -------~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 -------GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred -------CceEEEeCHHHHHHHHHhCCC
Confidence 346899999999999986543
No 31
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.27 E-value=3.7 Score=33.17 Aligned_cols=116 Identities=12% Similarity=-0.055 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccC--CCCceEEEEeec--CcceecCCCCcccCCccccCCCCCcc
Q 024690 123 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKS--GDVFSEPGHKWYEPDWWKFGDKKLYF 198 (264)
Q Consensus 123 ~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~--~~~~~y~G~~~~--~~p~r~~~~k~~vs~~~~~y~~~~yP 198 (264)
-.++..+.++++.+|++.+|+|..+..+.+...+.... +...+..|.... ..... ...+..... ........
T Consensus 64 ~~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 139 (202)
T cd06433 64 YDAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV--IGRRRPPPF--LDKFLLYG 139 (202)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc--ccCCCCcch--hhhHHhhc
Confidence 45566666777899999999999999998888874332 333455555321 11000 000000000 00112334
Q ss_pred ccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeE
Q 024690 199 RHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 244 (264)
Q Consensus 199 ~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~ 244 (264)
.++.|++.++++++.+.+-.-... ....||..+..-+...|...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDES--YRIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchh--hCchhhHHHHHHHHHcCCce
Confidence 566788899999999887532222 22357888876666555443
No 32
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.14 E-value=4.2 Score=33.47 Aligned_cols=104 Identities=16% Similarity=0.050 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccC-CCCceEEEEeecCcceecCCCCcccCCccccCCCCCccccc
Q 024690 123 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHA 201 (264)
Q Consensus 123 ~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~-~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~ 201 (264)
-.+++++. ....+|++..|||..+..+.|...+.... +...+..|.... . +.
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--------------------~-~~----- 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD--------------------P-DG----- 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc--------------------C-CC-----
Confidence 44566665 45789999999999999888777776654 211222221110 0 00
Q ss_pred cCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCe-EecCCCeeeCC
Q 024690 202 SGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK-YLNEGKFCCSS 254 (264)
Q Consensus 202 ~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~-~~~~~~f~~~~ 254 (264)
.+++.++++++++.+--..... ....||+.++.-+...|.. ......+.+..
T Consensus 122 ~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i~~~~~~~~h~~ 174 (202)
T cd04185 122 SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGIYVPDAVVVHKT 174 (202)
T ss_pred ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcEEecceEEEEcc
Confidence 3356789999988774211111 2346999998877755533 34444444443
No 33
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.92 E-value=4.5 Score=33.15 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccC--CCCceEEEEeec---CcceecCCCCcccCCccccCCCCCcc
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKS---GDVFSEPGHKWYEPDWWKFGDKKLYF 198 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~--~~~~~y~G~~~~---~~p~r~~~~k~~vs~~~~~y~~~~yP 198 (264)
.++..+.+....+|++..|+|..+.++.|...++... +...+..+.... +..... .++.+.+ . ....+.
T Consensus 73 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~-~--~~~~~~ 146 (202)
T cd04184 73 AATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSE---PFFKPDW-S--PDLLLS 146 (202)
T ss_pred HHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEec---cccCCCC-C--HHHhhh
Confidence 3455555556789999999999999988888887652 222333332210 100010 1111111 0 000111
Q ss_pred ccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEecC
Q 024690 199 RHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNE 247 (264)
Q Consensus 199 ~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~~~ 247 (264)
.-+.|++-+++++++..+---.. .....||..++.-+...|.+..+.
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~--~~~~~eD~~l~~rl~~~g~~~~~~ 193 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFRE--GFEGAQDYDLVLRVSEHTDRIAHI 193 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCc--CcccchhHHHHHHHHhccceEEEc
Confidence 11245566788888877752211 233579999988877767655543
No 34
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=92.86 E-value=2.1 Score=36.13 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=79.3
Q ss_pred EEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHH
Q 024690 75 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 154 (264)
Q Consensus 75 v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~ 154 (264)
..+++|...+.+ ...+.+ .+...+..+.++ . .+. . .|. .++....+....+|++.+|+|+.+.++.|..
T Consensus 29 ~eiivvdd~s~d---~~~~~l-~~~~~~~~~~v~-~-~~~-~---g~~-~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 29 LEIIVVTDGDDE---PYLSIL-SQTVKYGGIFVI-T-VPH-P---GKR-RALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CEEEEEeCCCCh---HHHHHH-HhhccCCcEEEE-e-cCC-C---ChH-HHHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 456666544432 223333 344556666654 2 221 2 233 2334444445799999999999999999998
Q ss_pred HHhccCCCCce--EEEEeecCcceecC-CCCc------ccCCc-cccCC---CCCccccccCCceeecHHHHHHHHHhcc
Q 024690 155 TLATHLDKPRV--YIGCMKSGDVFSEP-GHKW------YEPDW-WKFGD---KKLYFRHASGEMYVISRALAKFISINRS 221 (264)
Q Consensus 155 ~L~~~~~~~~~--y~G~~~~~~p~r~~-~~k~------~vs~~-~~~y~---~~~yP~y~~G~gyvlS~~~v~~l~~~~~ 221 (264)
.+.... .+.+ ..|.... .+. .+.| +.... ...++ ...--..++|++.++.+++++.+.-...
T Consensus 98 l~~~~~-~~~v~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~ 172 (235)
T cd06434 98 MLKPFE-DPKVGGVGTNQRI----LRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEE 172 (235)
T ss_pred HHHhcc-CCCEeEEcCceEe----ecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHH
Confidence 888775 3322 2122111 000 0111 00000 00000 0011134578888899998876542211
Q ss_pred -------ccCCCCcchHHHHHHHhhCCCe
Q 024690 222 -------ILRTYAHDDVSAGSWFLGLDVK 243 (264)
Q Consensus 222 -------~~~~~~~EDv~iG~~l~~l~v~ 243 (264)
..+....||..++.-+.+.|.+
T Consensus 173 ~~~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 173 FTNETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhhhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 1233467999998877766543
No 35
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=92.76 E-value=4 Score=34.51 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=65.4
Q ss_pred HHHHHHHhcC--CceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccCC-cc--c-cC-----
Q 024690 124 LFFAYAVDKW--DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD-WW--K-FG----- 192 (264)
Q Consensus 124 ~~l~w~~~~~--~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~-~~--~-~y----- 192 (264)
.++.++.+.. +.+|++..|+|+.+.++.|...+.... .+. +|.+......++....++... .| . .+
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMV 148 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhc
Confidence 3566666663 479999999999999999998887754 222 232211001111111111100 00 0 00
Q ss_pred -CCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEe
Q 024690 193 -DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 193 -~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
....--.++.|++.++++++++.+---... +..||..++.-+...|.+..
T Consensus 149 ~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~~---~~~eD~dl~~r~~~~G~~~~ 199 (236)
T cd06435 149 SRNERNAIIQHGTMCLIRRSALDDVGGWDEW---CITEDSELGLRMHEAGYIGV 199 (236)
T ss_pred cccccCceEEecceEEEEHHHHHHhCCCCCc---cccchHHHHHHHHHCCcEEE
Confidence 000001357889899999999987432221 34899999987776665443
No 36
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.42 E-value=4.8 Score=32.32 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=59.8
Q ss_pred HHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccCCccccCCCCCccccccCC
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGE 204 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~ 204 (264)
.+....+....+|++..|+|..+.++.|...++...+. ....|.... .... .-.....|+
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~------------~~~~-------~~~~~~~~~ 129 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVL------------LNEK-------LTERGIRGC 129 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceee------------cccc-------cceeEeccc
Confidence 44555566778999999999999988888877765322 222333110 0000 000234677
Q ss_pred ceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC
Q 024690 205 MYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 241 (264)
Q Consensus 205 gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~ 241 (264)
++++.+..+..+..-.........||+.++.-+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7888888877544333333333589999988777666
No 37
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.07 E-value=10 Score=35.34 Aligned_cols=198 Identities=11% Similarity=0.003 Sum_probs=111.3
Q ss_pred CceEEEEEECCCCCh-hHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCC
Q 024690 35 RPLVVIGILTRFGRK-NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVE 113 (264)
Q Consensus 35 ~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D 113 (264)
.+.+-|+|++--... -..+.++..=... -.+..++.+...+.+ +..+.+++-..++++.+.+ ...
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~d---~~~~~~~~~~~~~~~~~~~-~~~- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGSTD---ETYEILEELGAEYGPNFRV-IYP- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCCh---hHHHHHHHHHhhcCcceEE-Eec-
Confidence 366777777666544 3334444433222 123567777664433 4455566666666533333 211
Q ss_pred CCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCce-EEEEeec-Ccce-ecCCCCcccCCc--
Q 024690 114 APKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMKS-GDVF-SEPGHKWYEPDW-- 188 (264)
Q Consensus 114 ~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~-y~G~~~~-~~p~-r~~~~k~~vs~~-- 188 (264)
.+-...-..++.+.....+.++++..|-|+.+..+.|.+.+......+.. ..|.... ..+. ....++-..-+.
T Consensus 119 --~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (439)
T COG1215 119 --EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLS 196 (439)
T ss_pred --cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhh
Confidence 01122235677787777789999999999999999999999877543332 3333210 0000 000011000000
Q ss_pred -----cccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCC--eEecCCCee
Q 024690 189 -----WKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV--KYLNEGKFC 251 (264)
Q Consensus 189 -----~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v--~~~~~~~f~ 251 (264)
+..-.....+.+|.|++.++.+++++.+-. ..+..--||..+|..+...|. ..+++...+
T Consensus 197 ~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~ 263 (439)
T COG1215 197 AFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG---WLEDTITEDADLTLRLHLRGYRVVYVPEAIVW 263 (439)
T ss_pred hHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC---CCCCceeccHHHHHHHHHCCCeEEEeecceEe
Confidence 000012245788999999999999998872 223344799999998876554 444444333
No 38
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=91.89 E-value=0.25 Score=43.59 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=43.4
Q ss_pred cCCceeecHHHHHHHHHhcc----ccCCCCcchHHHHHHHhhCCCeEecCCCeeeCC
Q 024690 202 SGEMYVISRALAKFISINRS----ILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSS 254 (264)
Q Consensus 202 ~G~gyvlS~~~v~~l~~~~~----~~~~~~~EDv~iG~~l~~l~v~~~~~~~f~~~~ 254 (264)
+|+|+++|..+++.|.+.-. ..+.+.-.|-.+..|+..+|+.....++||+..
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~D 68 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMD 68 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEe
Confidence 89999999999999987522 224444579999999999999998889998875
No 39
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=91.76 E-value=7.1 Score=32.86 Aligned_cols=118 Identities=9% Similarity=-0.122 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHH---hccCCCCce-EEEEe-ecC-cceec---CCCCcccCCccccCC
Q 024690 123 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATL---ATHLDKPRV-YIGCM-KSG-DVFSE---PGHKWYEPDWWKFGD 193 (264)
Q Consensus 123 ~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L---~~~~~~~~~-y~G~~-~~~-~p~r~---~~~k~~vs~~~~~y~ 193 (264)
-.+++++... +++|++..|+|+.+.++.|..++ ......+.+ .+|.. ... ..... ....+..........
T Consensus 65 N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (237)
T cd02526 65 NIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEE 143 (237)
T ss_pred hHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccC
Confidence 3345554432 67999999999999988888875 322222222 23332 111 10000 000000000000000
Q ss_pred CCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCC
Q 024690 194 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV 242 (264)
Q Consensus 194 ~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v 242 (264)
...-..++.|+|.++++++.+.+---.... .+..||+.++.-+...|.
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~ 191 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGY 191 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCC
Confidence 111224556788899999998875322221 245789999887766654
No 40
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=91.68 E-value=7.4 Score=32.90 Aligned_cols=124 Identities=13% Similarity=0.008 Sum_probs=66.1
Q ss_pred HHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccC-----Cc--cc-----cC
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP-----DW--WK-----FG 192 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs-----~~--~~-----~y 192 (264)
++....+..+.+|++.+|.|+.+.++.|...+.... .+. +|.+.......++...|... .. +. .+
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 456666677899999999999999998888554432 222 23322111111111112100 00 00 00
Q ss_pred CCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCeeeCCC
Q 024690 193 DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCSSW 255 (264)
Q Consensus 193 ~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~~~ 255 (264)
....+ ..+.|++-++.+++++.+---.. ....||+.++.-+...| +....+...++..+
T Consensus 155 ~~~~~-~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~ 215 (232)
T cd06437 155 STGLF-FNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELP 215 (232)
T ss_pred hcCCe-EEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccceeeeeCC
Confidence 00111 12356666788888877632111 23479999997776555 45555555554443
No 41
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=91.62 E-value=0.67 Score=38.24 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=66.6
Q ss_pred eEEEecCeeEEeHHHHHHHHhccCCCCc--eEEEEeecCcceecCCCCcccCCc-c------ccCCCCCccccccCCcee
Q 024690 137 YYAKVNDDVYVNIDSLGATLATHLDKPR--VYIGCMKSGDVFSEPGHKWYEPDW-W------KFGDKKLYFRHASGEMYV 207 (264)
Q Consensus 137 fvlk~DDD~~Vn~~~L~~~L~~~~~~~~--~y~G~~~~~~p~r~~~~k~~vs~~-~------~~y~~~~yP~y~~G~gyv 207 (264)
||+.+|+|+.+..+-|.+.+.... ++. ..-|.+... +..+.-.++...+. + ........|.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999988888877665 222 222222210 00000011111110 0 000112457788999999
Q ss_pred ecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCeeeCCC
Q 024690 208 ISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCSSW 255 (264)
Q Consensus 208 lS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~~~ 255 (264)
+++++++.+.--. -.....||..++.-+...| +..+++...++..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999875221 2345579999997776554 55666665555544
No 42
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=91.56 E-value=0.86 Score=37.04 Aligned_cols=135 Identities=10% Similarity=0.054 Sum_probs=72.3
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
.+.++.+-+.+.+ ...+.++....++..+.++ ....++. + -.+++.+..+...+|++.+|+|....++.|.
T Consensus 29 ~~eiivvdd~s~d---~t~~~~~~~~~~~~~i~~i-~~~~n~G----~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTD---RTLEILRELAARDPRVKVI-RLSRNFG----Q-QAALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEE-EecCCCC----c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 4566666655443 2233444444455555544 2222221 1 2444555555667999999999999988888
Q ss_pred HHHhccCCCCceEEEEeecC--cceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHh
Q 024690 154 ATLATHLDKPRVYIGCMKSG--DVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISIN 219 (264)
Q Consensus 154 ~~L~~~~~~~~~y~G~~~~~--~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~ 219 (264)
..++...+...+.+|..... ...+.-.++.+.......+ ...-+...|+++++++++++.+..-
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLS--GVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHc--CCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 88776544445666663211 1000000000000000011 1223456788899999999998754
No 43
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=91.35 E-value=10 Score=33.98 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=79.7
Q ss_pred CCCeeEeCCCCCCCCCchH--HHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCc-eEEEEe-ec-C-c-
Q 024690 102 TNDFFILDHHVEAPKEFPN--KAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR-VYIGCM-KS-G-D- 174 (264)
Q Consensus 102 ~~DIl~~~d~~D~y~nl~~--K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~-~y~G~~-~~-~-~- 174 (264)
+.++.++ ... .|+-. =.-.+++.+...... |++-.++|+.+.++.|.+.++.....+. ...|.. .. + +
T Consensus 55 ~~~v~~i-~~~---~NlG~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~ 129 (305)
T COG1216 55 FPNVRLI-ENG---ENLGFAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESL 129 (305)
T ss_pred CCcEEEE-EcC---CCccchhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCc
Confidence 6787766 222 33211 112456666554222 9999999999999999888877654332 333432 11 1 1
Q ss_pred -ce-ecC-----CCCcccCCccc----cCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCC-
Q 024690 175 -VF-SEP-----GHKWYEPDWWK----FGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV- 242 (264)
Q Consensus 175 -p~-r~~-----~~k~~vs~~~~----~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v- 242 (264)
+. +.+ ...|..+.... .........+++|++.++++++++++---.+ --.+..||+-++.=+...|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G~~ 208 (305)
T COG1216 130 YIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAGYK 208 (305)
T ss_pred chheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcCCe
Confidence 11 110 11121111000 0111122225899999999999999975222 22347999999988877763
Q ss_pred -eEecCCCeee
Q 024690 243 -KYLNEGKFCC 252 (264)
Q Consensus 243 -~~~~~~~f~~ 252 (264)
..+......|
T Consensus 209 i~~~p~a~i~H 219 (305)
T COG1216 209 IYYVPDAIIYH 219 (305)
T ss_pred EEEeeccEEEE
Confidence 3344444444
No 44
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.01 E-value=5.6 Score=32.57 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=61.3
Q ss_pred HHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCC--CCceEEEEeec----CcceecCCCCcccCCc---cccCCCC
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD--KPRVYIGCMKS----GDVFSEPGHKWYEPDW---WKFGDKK 195 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~--~~~~y~G~~~~----~~p~r~~~~k~~vs~~---~~~y~~~ 195 (264)
++..+....+.+|++..|+|.++.++.|...+..... ...++.|.+.. +..... +. .+.. +..+...
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 146 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGK---RR-LPTSHDDILKFARR 146 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecc---cc-CCCCHHHHHHHhcc
Confidence 4555566678999999999999999988888876532 22344444321 111110 00 1100 0000000
Q ss_pred CccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecC
Q 024690 196 LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNE 247 (264)
Q Consensus 196 ~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~ 247 (264)
.- + ..|++.++.+++++.+-.-. .....||..+...+...| +..++.
T Consensus 147 ~~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 147 RS-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPE 195 (201)
T ss_pred CC-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccH
Confidence 11 1 24556677777766553211 225699999987775444 444443
No 45
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=89.09 E-value=16 Score=32.49 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=91.0
Q ss_pred CCcEEEEEEeeecCCCCccchhhhHhHHhhCCCe-eEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHH
Q 024690 72 EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDF-FILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID 150 (264)
Q Consensus 72 ~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DI-l~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~ 150 (264)
...+.++++-+.+.. +..+.|.+-.+.++-+ ++..+.....-+ .-.+..-+.+....+|++..|.|+++.++
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~----~a~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFS----RAKARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcC----HHHHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 356777777665543 3346677777777766 322111111122 23445556666789999999999999999
Q ss_pred HHHHHHh---ccCCCC-ceEEEE-eecCcc----ee-cCCCCcc--cCCccccCCCCCcc-ccccCCceeecHHHHHHHH
Q 024690 151 SLGATLA---THLDKP-RVYIGC-MKSGDV----FS-EPGHKWY--EPDWWKFGDKKLYF-RHASGEMYVISRALAKFIS 217 (264)
Q Consensus 151 ~L~~~L~---~~~~~~-~~y~G~-~~~~~p----~r-~~~~k~~--vs~~~~~y~~~~yP-~y~~G~gyvlS~~~v~~l~ 217 (264)
.+.+.+. .....+ .+.++. .....+ .. .....|. ..+.......+.+. ....|++.+++++.-..+-
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iG 184 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIG 184 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhC
Confidence 9998888 433222 333322 211110 00 0000010 00000000011111 2334599999999988887
Q ss_pred HhccccCCCCcchHHHHHHHhhCCCeE
Q 024690 218 INRSILRTYAHDDVSAGSWFLGLDVKY 244 (264)
Q Consensus 218 ~~~~~~~~~~~EDv~iG~~l~~l~v~~ 244 (264)
---+....+..||.-++.=+...+...
T Consensus 185 GfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 185 GFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCccccCCCcchHHHHHHHHHcCCcE
Confidence 544555557799999987776665433
No 46
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=88.33 E-value=13 Score=30.77 Aligned_cols=90 Identities=8% Similarity=-0.001 Sum_probs=50.5
Q ss_pred HHHHHhcCCceeEEEecCeeEEeHHHHHHHHhc-cCCCCceEEEEee-cCcceecCCCCc--ccC---Ccc-ccCCCCCc
Q 024690 126 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLAT-HLDKPRVYIGCMK-SGDVFSEPGHKW--YEP---DWW-KFGDKKLY 197 (264)
Q Consensus 126 l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~-~~~~~~~y~G~~~-~~~p~r~~~~k~--~vs---~~~-~~y~~~~y 197 (264)
+....+....+|++.+|+|..+.++.|...++. ..+...+..|... ..... .....+ +.+ ..+ ... ...-
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLL-LGRK 147 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHH-cCCC
Confidence 334444455699999999999999988888876 3344455556432 11110 000000 000 000 000 0112
Q ss_pred cccccCCceeecHHHHHHHH
Q 024690 198 FRHASGEMYVISRALAKFIS 217 (264)
Q Consensus 198 P~y~~G~gyvlS~~~v~~l~ 217 (264)
...++|++.++++++++.+.
T Consensus 148 ~~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 148 VSDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCCccchhhHHHHHHHh
Confidence 34577888899999999987
No 47
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=87.07 E-value=9.5 Score=38.87 Aligned_cols=129 Identities=18% Similarity=0.092 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCce-EEEEe---ecCcce-ecCCCCcccCCcc-ccC
Q 024690 119 PNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCM---KSGDVF-SEPGHKWYEPDWW-KFG 192 (264)
Q Consensus 119 ~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~-y~G~~---~~~~p~-r~~~~k~~vs~~~-~~y 192 (264)
..|. ..++.+.++.+.+|++..|.|+.+..+-|.+.+......+.+ .++.. .+..|+ ++-......+.+. .+|
T Consensus 214 ~~KA-gnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~ 292 (713)
T TIGR03030 214 HAKA-GNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFY 292 (713)
T ss_pred CCCh-HHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHH
Confidence 3453 346666777788999999999999999888877665323332 11111 111111 1100000001000 000
Q ss_pred ----C--CCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCe--EecCCCee
Q 024690 193 ----D--KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK--YLNEGKFC 251 (264)
Q Consensus 193 ----~--~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~--~~~~~~f~ 251 (264)
+ ...-..+|.|++.++.+++.+.+---.. ..-.||..++.-+...|.+ ..++....
T Consensus 293 ~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~ 356 (713)
T TIGR03030 293 GLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIA 356 (713)
T ss_pred HHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEecccccc
Confidence 0 0011346779999999999988742211 1237999999988877654 44444443
No 48
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=86.28 E-value=13 Score=30.80 Aligned_cols=170 Identities=9% Similarity=-0.083 Sum_probs=87.9
Q ss_pred CcEEEEEEeeecCCCCccchhhhHhHHhhCCCe-eEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHH
Q 024690 73 KGIITRFVIGRSANRGDSLDQDIDSENKQTNDF-FILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 151 (264)
Q Consensus 73 ~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DI-l~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~ 151 (264)
..+.++.+-+.+.+ ...+.+++..+.++.. ..+ .... |.- + -.++....+....+|++.+|+|....++.
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i-~~~~---n~G-~-~~a~~~g~~~a~gd~i~~ld~D~~~~~~~ 99 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVL-TLPK---NRG-K-GGAVRAGMLAARGDYILFADADLATPFEE 99 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEE-Eccc---CCC-c-HHHHHHHHHHhcCCEEEEEeCCCCCCHHH
Confidence 34677777665544 3344455555566654 222 1222 211 1 23344444455679999999999999999
Q ss_pred HHHHHhc-cCCCCceEEEEeecCcceecCCCCcc---cCCc-----cccCCCCCccccccCCceeecHHHHHHHHHhccc
Q 024690 152 LGATLAT-HLDKPRVYIGCMKSGDVFSEPGHKWY---EPDW-----WKFGDKKLYFRHASGEMYVISRALAKFISINRSI 222 (264)
Q Consensus 152 L~~~L~~-~~~~~~~y~G~~~~~~p~r~~~~k~~---vs~~-----~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~ 222 (264)
+..+++. ......+.+|......-.......|+ .+.. +.+.. ..+. -+..+..++++.+++.+.... .
T Consensus 100 l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-d~~~g~~~~~r~~~~~~~~~~-~ 176 (211)
T cd04188 100 LEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLG-LGIK-DTQCGFKLFTRDAARRLFPRL-H 176 (211)
T ss_pred HHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcC-CCCc-ccccCceeEcHHHHHHHHhhh-h
Confidence 9888876 33344566776321100000000111 0000 00110 1111 123356899999999886432 1
Q ss_pred cCCCCcchHHHHHHHhhCCCeEecCCCeeeCCC
Q 024690 223 LRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSW 255 (264)
Q Consensus 223 ~~~~~~EDv~iG~~l~~l~v~~~~~~~f~~~~~ 255 (264)
...+ .+|..+-..+...|.+...-+--+..++
T Consensus 177 ~~~~-~~d~el~~r~~~~g~~~~~vpi~~~~~~ 208 (211)
T cd04188 177 LERW-AFDVELLVLARRLGYPIEEVPVRWVEIP 208 (211)
T ss_pred ccce-EeeHHHHHHHHHcCCeEEEcCcceecCC
Confidence 2222 4588776666667666555555444443
No 49
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=86.21 E-value=7.2 Score=35.65 Aligned_cols=135 Identities=6% Similarity=-0.043 Sum_probs=70.1
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCC-eeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTND-FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 152 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~D-Il~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L 152 (264)
.+.++++-..+.+ ...+.+++-.+.+++ ++.+ ....++. | -.+++-..++.+.+|++.+|.|...+++.+
T Consensus 38 ~~EIIvVDDgS~D---~T~~il~~~~~~~~~~v~~i-~~~~n~G----~-~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 38 EYEILLIDDGSSD---NSAEMLVEAAQAPDSHIVAI-LLNRNYG----Q-HSAIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CEEEEEEeCCCCC---cHHHHHHHHHhhcCCcEEEE-EeCCCCC----H-HHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 4778888766654 223333333334444 3332 1222222 1 123334445567899999999999999999
Q ss_pred HHHHhccCCCCceEEEEeec--CcceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHh
Q 024690 153 GATLATHLDKPRVYIGCMKS--GDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISIN 219 (264)
Q Consensus 153 ~~~L~~~~~~~~~y~G~~~~--~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~ 219 (264)
.++++.......+..|.... .++.|.-.++.+.---..+ ....++.+.+| .-++++++++.+...
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~-~g~~~~d~~~g-fr~~~r~~~~~l~~~ 175 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT-TGKAMGDYGCM-LRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCCCcC-eEEEcHHHHHHHHHC
Confidence 88887764333444444321 1222222122111000001 12234444333 348999999998653
No 50
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=85.98 E-value=10 Score=33.46 Aligned_cols=188 Identities=10% Similarity=0.049 Sum_probs=95.9
Q ss_pred EEEECCCCChh-HHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhh-------hHhHHhhCCCeeEeCCC
Q 024690 40 IGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQD-------IDSENKQTNDFFILDHH 111 (264)
Q Consensus 40 i~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~-------l~~E~~~~~DIl~~~d~ 111 (264)
|+|++.-...+ -.+.++..+...... .-...+.+ |++.-++++ +.... |.+|....-.+.++
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~----~~~~~~eI-~vldD~~d~--~~~~~~~~~~~~l~~~~~~~~~v~~~--- 72 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKT----GLADHFDF-FILSDTRDP--DIWLAEEAAWLDLCEELGAQGRIYYR--- 72 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhc----CCcCceEE-EEECCCCCh--HHHHHHHHHHHHHHHHhCCCCcEEEE---
Confidence 56676666555 566677665421100 00123556 777544431 21111 22222222233332
Q ss_pred CCCCCCchHHHHHHHHHHHhc-CCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCC---Cc----
Q 024690 112 VEAPKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGH---KW---- 183 (264)
Q Consensus 112 ~D~y~nl~~K~~~~l~w~~~~-~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~---k~---- 183 (264)
..-.|.-.|.-..-...... .+.+|++-.|.|+.+.++.|.+.+......+. +|.+....-..+..+ ++
T Consensus 73 -~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~ 149 (254)
T cd04191 73 -RRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFA 149 (254)
T ss_pred -EcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHH
Confidence 22234345555444444332 57899999999999999999998876532232 233321100011111 00
Q ss_pred ---ccC------CccccCCCCCccccccCCceeecHHHHHHHHHhc-----ccc-CCCCcchHHHHHHHhhCCCeEe
Q 024690 184 ---YEP------DWWKFGDKKLYFRHASGEMYVISRALAKFISINR-----SIL-RTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 184 ---~vs------~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~-----~~~-~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
+.+ ..|. .--.+|.|...++.++++..+.... .-. ...-.||..+|..+...|.+-+
T Consensus 150 ~~~~~~~~~~~~~~~~-----~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~ 221 (254)
T cd04191 150 NRLYGPVFGRGLAAWQ-----GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVR 221 (254)
T ss_pred HHHHHHHHHHHHHHhc-----CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEE
Confidence 000 0010 0113567999999999988763211 111 1235899999999987775544
No 51
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=83.64 E-value=25 Score=34.44 Aligned_cols=107 Identities=9% Similarity=0.003 Sum_probs=59.2
Q ss_pred CceeEEEecCeeEEeHHHHHHHHhccCCCCceEE-EEeecCcceecCCCCc----ccCCcccc----CC---CCCccccc
Q 024690 134 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYI-GCMKSGDVFSEPGHKW----YEPDWWKF----GD---KKLYFRHA 201 (264)
Q Consensus 134 ~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~-G~~~~~~p~r~~~~k~----~vs~~~~~----y~---~~~yP~y~ 201 (264)
++++++..|-|..+.++.|..+... .+...+.- +.... ..+.+.| |..+.... .+ .-.-+..|
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~~-~~~~~~VQ~pv~~~----~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~ 232 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNYL-LPRHDFVQLPVFSL----PRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPS 232 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHhh-cCCCCEEecceecc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4699999999999999988764332 22222111 11110 0111111 11000000 00 00123457
Q ss_pred cCCceeecHHHHHHHHHhcc---ccCCCCcchHHHHHHHhhCCCeEe
Q 024690 202 SGEMYVISRALAKFISINRS---ILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 202 ~G~gyvlS~~~v~~l~~~~~---~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
+|.|+++++++++.+..... .-...--||.-+|.-+...|.+.+
T Consensus 233 ~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~ 279 (504)
T PRK14716 233 AGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQI 279 (504)
T ss_pred CCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEE
Confidence 89999999999999865321 222345899999988876665443
No 52
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=82.87 E-value=4.8 Score=37.20 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHHHHHhcCCceeEEEecCeeEEeHH---HHHHHHhccCCCCceEEEEeecCcceecCCCCcc-c---CCccccCCCCCc
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVYVNID---SLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWY-E---PDWWKFGDKKLY 197 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~Vn~~---~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~-v---s~~~~~y~~~~y 197 (264)
++.|+-+..++++++.+|||+.+.++ -+.+.|..+...+++++-+-.+. .++.. + +.. + .+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd------nG~~~~~~~~~~~--l----yr 155 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND------NGKEHFVDDTPSL--L----YR 155 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc------CCcccccCCCcce--E----EE
Confidence 66666655679999999999999988 44455544444455544332211 11111 1 111 2 22
Q ss_pred cccccCCceeecHHHHHHHHHhccccCCCCcch
Q 024690 198 FRHASGEMYVISRALAKFISINRSILRTYAHDD 230 (264)
Q Consensus 198 P~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~ED 230 (264)
-.|+.|.|.++++++-+.+ ....+...+||
T Consensus 156 s~ff~glGWml~r~~W~e~---~~~wp~~~WD~ 185 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL---EPKWPKAFWDD 185 (334)
T ss_pred ecCCCchHHHHHHHHHHHh---CCCCCCCChHH
Confidence 3578899999999999887 23555544555
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=81.49 E-value=32 Score=30.10 Aligned_cols=125 Identities=9% Similarity=-0.079 Sum_probs=63.4
Q ss_pred HHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCC--CceEEEE-eec-CcceecC---CCCcccCCccccC-CC-C
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDK--PRVYIGC-MKS-GDVFSEP---GHKWYEPDWWKFG-DK-K 195 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~--~~~y~G~-~~~-~~p~r~~---~~k~~vs~~~~~y-~~-~ 195 (264)
+++++.+ .+.+|++..|||+.+..+.|...++..... .-..+|. +.. ......+ ...+..+.. ... +. .
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQI-SLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeee-cccccCCc
Confidence 5666654 368999999999999988877777654322 1222332 111 1000000 000000000 000 00 0
Q ss_pred CccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCeee
Q 024690 196 LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCC 252 (264)
Q Consensus 196 ~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~ 252 (264)
.-..++.++|.++++++++.+---.+.+ .+..||+-+..=+...| +-...+..+.|
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H 200 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEH 200 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEE
Confidence 1123455667789999999885321221 23578998876665544 34444444444
No 54
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=81.08 E-value=15 Score=29.47 Aligned_cols=132 Identities=7% Similarity=-0.039 Sum_probs=69.5
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
...++.+...+.+ ...+.++.-..++..+..+ ....+.. .-.++....+....+|++..|+|..+.++.|.
T Consensus 28 ~~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~-~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~ 98 (185)
T cd04179 28 DYEIIVVDDGSTD---GTAEIARELAARVPRVRVI-RLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIP 98 (185)
T ss_pred CEEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEE-EccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 3556666544433 3344454444555554433 2333322 12444555555566999999999999999888
Q ss_pred HHHhc-cCCCCceEEEEeec--Cc---c-eecCCCCcccCCccc-cCCCCCccccccCCceeecHHHHHHHH
Q 024690 154 ATLAT-HLDKPRVYIGCMKS--GD---V-FSEPGHKWYEPDWWK-FGDKKLYFRHASGEMYVISRALAKFIS 217 (264)
Q Consensus 154 ~~L~~-~~~~~~~y~G~~~~--~~---p-~r~~~~k~~vs~~~~-~y~~~~yP~y~~G~gyvlS~~~v~~l~ 217 (264)
+++.. ......+.+|.... +. + .+. ...+....... +. ..-.....|+++++++++++.+.
T Consensus 99 ~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 99 KLLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRLLL--GVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHHHc--CCCCcCCCCceeeeHHHHHHHHH
Confidence 88876 33444566666321 10 0 000 00000000000 11 11123356778899999999985
No 55
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=77.04 E-value=62 Score=33.24 Aligned_cols=194 Identities=9% Similarity=-0.007 Sum_probs=98.6
Q ss_pred CCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCC
Q 024690 33 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 112 (264)
Q Consensus 33 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~ 112 (264)
++...+-|+|+..-....-.+.|...=.+.. -.+..+++++. +++ +...+.+++-.++|+++..+ ...
T Consensus 60 ~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ld--------YP~~eI~vi~~-~nD--~~T~~~~~~l~~~~p~~~~v-~~~ 127 (727)
T PRK11234 60 PDEKPLAIMVPAWNETGVIGNMAELAATTLD--------YENYHIFVGTY-PND--PATQADVDAVCARFPNVHKV-VCA 127 (727)
T ss_pred CCCCCEEEEEecCcchhhHHHHHHHHHHhCC--------CCCeEEEEEec-CCC--hhHHHHHHHHHHHCCCcEEE-EeC
Confidence 3445666667754444444444444311221 12356666654 222 23344555555678775322 112
Q ss_pred CCCCCchHHHHHHHHHHHhcC---------CceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCc
Q 024690 113 EAPKEFPNKAKLFFAYAVDKW---------DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKW 183 (264)
Q Consensus 113 D~y~nl~~K~~~~l~w~~~~~---------~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~ 183 (264)
. ..| +.|.- +++|+.... .++.++-.|-|+.|.++.|. .+....+...+.-+... +..|+ .+.|
T Consensus 128 ~-~g~-~gKa~-aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~~~ 200 (727)
T PRK11234 128 R-PGP-TSKAD-CLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY--PFERE-WTHF 200 (727)
T ss_pred C-CCC-CCHHH-HHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc--CCCcc-HHHH
Confidence 2 112 45653 455555442 34557779999999999997 34333221111111111 10111 1111
Q ss_pred ----ccCCcc-ccCC----CC--CccccccCCceeecHHHHHHHHHhc---cccCCCCcchHHHHHHHhhCCCeEe
Q 024690 184 ----YEPDWW-KFGD----KK--LYFRHASGEMYVISRALAKFISINR---SILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 184 ----~vs~~~-~~y~----~~--~yP~y~~G~gyvlS~~~v~~l~~~~---~~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
|..+.. ...+ .. .-+..++|.++.+++.+++.+.+.. ......--||.-+|.-+...|.+..
T Consensus 201 ~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~ 276 (727)
T PRK11234 201 TSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREI 276 (727)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEE
Confidence 111110 0000 00 2345688999999999887777653 2334456899999999887775543
No 56
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=74.54 E-value=54 Score=27.99 Aligned_cols=155 Identities=7% Similarity=0.000 Sum_probs=79.1
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCC--eeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTND--FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 151 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~D--Il~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~ 151 (264)
.+.++++-..+.+ ...+.+++-.++|++ +..+ . .-.|.. | -.++.......+.+|++.+|+|..+.++.
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~-~---~~~n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~ 110 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLR-P---RPGKLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKY 110 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEE-e---cCCCCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHH
Confidence 5677877665544 333344443445553 3322 1 112221 1 23445555556789999999999999988
Q ss_pred HHHHHhccC-CCCceEEEEee-c-Cc-----ceecCCCCc--ccCCccccCCCCCccccccCCceeecHHHHHHHHHhcc
Q 024690 152 LGATLATHL-DKPRVYIGCMK-S-GD-----VFSEPGHKW--YEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRS 221 (264)
Q Consensus 152 L~~~L~~~~-~~~~~y~G~~~-~-~~-----p~r~~~~k~--~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~ 221 (264)
|..++.... ....+..|... . +. ..|.-.++. ..... .+. ... +.++|++.++++++++.+.....
T Consensus 111 l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~-~~~-~d~~g~~~~~rr~~~~~i~~~~~ 186 (243)
T PLN02726 111 LPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQT--LLW-PGV-SDLTGSFRLYKRSALEDLVSSVV 186 (243)
T ss_pred HHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHH--HhC-CCC-CcCCCcccceeHHHHHHHHhhcc
Confidence 888776543 23345566521 1 10 001000000 00000 111 111 23678888999999999975322
Q ss_pred ccCCCCcchHHHHHHHhhCCCe
Q 024690 222 ILRTYAHDDVSAGSWFLGLDVK 243 (264)
Q Consensus 222 ~~~~~~~EDv~iG~~l~~l~v~ 243 (264)
. ..+ ..|..+...+...|.+
T Consensus 187 ~-~~~-~~~~el~~~~~~~g~~ 206 (243)
T PLN02726 187 S-KGY-VFQMEIIVRASRKGYR 206 (243)
T ss_pred C-CCc-EEehHHHHHHHHcCCc
Confidence 2 122 3356565555544433
No 57
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=74.44 E-value=46 Score=27.65 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEE
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGC 169 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~ 169 (264)
+.....+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 75 a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 75 AKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 344555556789999999999999988877665543333344555
No 58
>PRK10018 putative glycosyl transferase; Provisional
Probab=72.49 E-value=64 Score=28.78 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhcc
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH 159 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~ 159 (264)
.++..+.+.+..+|++..|+|..+.++.|..++...
T Consensus 75 ~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 75 AVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 344555566789999999999999999888777654
No 59
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.30 E-value=54 Score=26.99 Aligned_cols=108 Identities=9% Similarity=-0.065 Sum_probs=59.7
Q ss_pred HHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEe--ec--C-cceecCCCCcccCCccccCCCCCcccc
Q 024690 126 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCM--KS--G-DVFSEPGHKWYEPDWWKFGDKKLYFRH 200 (264)
Q Consensus 126 l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~--~~--~-~p~r~~~~k~~vs~~~~~y~~~~yP~y 200 (264)
+..+.+....+|++.+|+|..+.++.|...+....... ..+|.. .. . ...+....++.... . ....+|
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~ 136 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRS-----R-LFGLPY 136 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhccccee-----c-ccCCCc
Confidence 34445556689999999999999888888766544332 333432 11 1 11110001111110 0 011122
Q ss_pred ccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeE
Q 024690 201 ASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 244 (264)
Q Consensus 201 ~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~ 244 (264)
++.+.++++++.+.+-.-... +..||.-++.-+...|...
T Consensus 137 -~~~~~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 137 -GDQGLFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGRPA 176 (221)
T ss_pred -CCceEEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCCEE
Confidence 356789999988777532222 2789998887776665433
No 60
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=67.50 E-value=7.5 Score=33.61 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=60.7
Q ss_pred CCceeEEEecCeeEEeHHHHHHHHhccCCCCc--eEEEEeecCcceecCCC-----CcccCCc--cccCCCCCccccccC
Q 024690 133 WDAEYYAKVNDDVYVNIDSLGATLATHLDKPR--VYIGCMKSGDVFSEPGH-----KWYEPDW--WKFGDKKLYFRHASG 203 (264)
Q Consensus 133 ~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~--~y~G~~~~~~p~r~~~~-----k~~vs~~--~~~y~~~~yP~y~~G 203 (264)
.+.+|++.+|.|+.+..+.|...+......+. ...|.+....+...... .|..+.. ...-..-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 47899999999999999998888876532233 23343321100000000 0000000 000011244667889
Q ss_pred CceeecHHHHHHHHHhccc----------c-------CCCCcchHHHHHHHhhCCC
Q 024690 204 EMYVISRALAKFISINRSI----------L-------RTYAHDDVSAGSWFLGLDV 242 (264)
Q Consensus 204 ~gyvlS~~~v~~l~~~~~~----------~-------~~~~~EDv~iG~~l~~l~v 242 (264)
+++++.+++++.+...... . ....-||..++..+...|.
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~ 207 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGP 207 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCC
Confidence 9999999998776322110 0 1124799999988865553
No 61
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=67.44 E-value=58 Score=33.21 Aligned_cols=199 Identities=11% Similarity=0.049 Sum_probs=103.5
Q ss_pred CCCCCCceEEEEEECCCCChhH-HHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchh--hhHhHHhhCC---
Q 024690 30 KDPKKRPLVVIGILTRFGRKNN-RDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQ--DIDSENKQTN--- 103 (264)
Q Consensus 30 ~~~~~~~~lli~V~S~~~~~~r-R~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~--~l~~E~~~~~--- 103 (264)
.......++.|+|++.-+..++ +..|+.++.+-... ....++.+ |++.-+.+++....+ .+.+=.++|+
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~----~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAAT----GHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc----CCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCC
Confidence 4455667788888877765543 56777777653210 01124555 777765542100000 1111123332
Q ss_pred CeeEeCCCCCCCCCchHHHHHHHHHHHhc-CCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCC
Q 024690 104 DFFILDHHVEAPKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHK 182 (264)
Q Consensus 104 DIl~~~d~~D~y~nl~~K~~~~l~w~~~~-~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k 182 (264)
.|... ..-.|.-.|.-..-.|.... .+++|++-.|-|+.+..+.|.+.+.....+++ +|-+.......+..+
T Consensus 193 ~i~yr----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~s- 265 (691)
T PRK05454 193 RIFYR----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADT- 265 (691)
T ss_pred cEEEE----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCC-
Confidence 44432 22234445666555555433 47899999999999999999998876533333 355432111111111
Q ss_pred ccc-----------C------CccccCCCCCccccccCCceeecHHHHHHHHHh--cccc----CCCCcchHHHHHHHhh
Q 024690 183 WYE-----------P------DWWKFGDKKLYFRHASGEMYVISRALAKFISIN--RSIL----RTYAHDDVSAGSWFLG 239 (264)
Q Consensus 183 ~~v-----------s------~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~--~~~~----~~~~~EDv~iG~~l~~ 239 (264)
++- + .+|+. .-- .+.|...++.+++....-.- -+-. ...--||...|..+..
T Consensus 266 lfaR~qqf~~~~y~~~~~~G~~~w~~----~~g-~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~ 340 (691)
T PRK05454 266 LFARLQQFATRVYGPLFAAGLAWWQG----GEG-NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRR 340 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc----Ccc-ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHH
Confidence 110 0 00110 001 12466678888877654310 0011 1234789999999987
Q ss_pred CCCeEe
Q 024690 240 LDVKYL 245 (264)
Q Consensus 240 l~v~~~ 245 (264)
.|-+..
T Consensus 341 ~GyrV~ 346 (691)
T PRK05454 341 AGWGVW 346 (691)
T ss_pred CCCEEE
Confidence 765444
No 62
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=63.56 E-value=1.3e+02 Score=31.60 Aligned_cols=117 Identities=15% Similarity=-0.000 Sum_probs=66.4
Q ss_pred HHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCce-EEEEe---ecCcc-eecCCCCc-ccC-CccccCC----
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCM---KSGDV-FSEPGHKW-YEP-DWWKFGD---- 193 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~-y~G~~---~~~~p-~r~~~~k~-~vs-~~~~~y~---- 193 (264)
.++.+.++.+.+|++..|.|+.+..+-|...+.....++++ .++.. .+..| .|+- +.. ..+ +...+|.
T Consensus 330 nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl-~~~~~~~~e~~~fy~~iq~ 408 (852)
T PRK11498 330 NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNL-GRFRKTPNEGTLFYGLVQD 408 (852)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhh-HHHhhcccchhHHHHHHHh
Confidence 56777777889999999999999988888766442222222 11211 01111 1110 000 000 0000110
Q ss_pred --CCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCCeEe
Q 024690 194 --KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 194 --~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
...-..+|.|++.++.+++++.+---... .--||..++.-+...|.+-.
T Consensus 409 g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~---titED~dlslRL~~~Gyrv~ 459 (852)
T PRK11498 409 GNDMWDATFFCGSCAVIRRKPLDEIGGIAVE---TVTEDAHTSLRLHRRGYTSA 459 (852)
T ss_pred HHHhhcccccccceeeeEHHHHHHhcCCCCC---ccCccHHHHHHHHHcCCEEE
Confidence 00112467899999999999998532222 23699999999987775443
No 63
>PLN03181 glycosyltransferase; Provisional
Probab=58.20 E-value=57 Score=31.22 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHhccCccccccccCCCcEEEEEEeeecCCC-----Cccc-hhhhH---hHHhhCC-CeeEeCCCCC-CCCCchHH
Q 024690 53 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANR-----GDSL-DQDID---SENKQTN-DFFILDHHVE-APKEFPNK 121 (264)
Q Consensus 53 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~-----~~~~-~~~l~---~E~~~~~-DIl~~~d~~D-~y~nl~~K 121 (264)
+.-|+.|.+.... ...+.+-+++-|.|..+.+ .+.. ...++ +=+++|| ++.+.....+ .+..-+.|
T Consensus 109 D~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaK 185 (453)
T PLN03181 109 DEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAK 185 (453)
T ss_pred HHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhH
Confidence 4556678765421 1123344566666655221 1221 22222 1256777 4443311223 56677889
Q ss_pred HHHHHHHHHhcCCceeEEEecCeeEEe
Q 024690 122 AKLFFAYAVDKWDAEYYAKVNDDVYVN 148 (264)
Q Consensus 122 ~~~~l~w~~~~~~~~fvlk~DDD~~Vn 148 (264)
..++-.-+.++|+++||.-+|.|+++-
T Consensus 186 ipalRaAM~a~PeAEWfWWLDsDALIM 212 (453)
T PLN03181 186 LPVVRAAMLAHPEAEWIWWVDSDAVFT 212 (453)
T ss_pred HHHHHHHHHHCCCceEEEEecCCceee
Confidence 888888888899999999999999873
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=56.85 E-value=77 Score=23.35 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhc
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLAT 158 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~ 158 (264)
.++..+.+..+.+|++.+|+|..+.++.+...+..
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 34444444557999999999999998888776433
No 65
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=54.94 E-value=1.1e+02 Score=24.57 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=51.6
Q ss_pred HHHHHHHh-cCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccC---Cccc----cCC--
Q 024690 124 LFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP---DWWK----FGD-- 193 (264)
Q Consensus 124 ~~l~w~~~-~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs---~~~~----~y~-- 193 (264)
.+++++.. ..+.+|++.+|.|+.+.++.|...+........+..|+... +++...|.-. .++. +..
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS----KNPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee----eCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 24689999999999999888888877765444555565421 1122222100 0000 000
Q ss_pred --CCCccccccCCceeecHHHHHH
Q 024690 194 --KKLYFRHASGEMYVISRALAKF 215 (264)
Q Consensus 194 --~~~yP~y~~G~gyvlS~~~v~~ 215 (264)
.-..+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 0122446789999999999988
No 66
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=54.26 E-value=50 Score=29.78 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=55.1
Q ss_pred CCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCC--CCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeH
Q 024690 72 EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV--EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNI 149 (264)
Q Consensus 72 ~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~--D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~ 149 (264)
...+.++|+-|.. .....|..=.....-++.+ ++. +.+..-+.--..+..|..+.|+..+++..|-|+|.-.
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl-~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYL-DFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEE-ecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 4456666665543 3345555555556665656 443 2334434555677888888899999999999999999
Q ss_pred HHHHHHHh
Q 024690 150 DSLGATLA 157 (264)
Q Consensus 150 ~~L~~~L~ 157 (264)
++..+.|+
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99998884
No 67
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=50.28 E-value=83 Score=22.60 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCeeEeCCCCCCCCCchHHHHHHHHHHHhc-CCceeEEEecCeeEEeHHH
Q 024690 103 NDFFILDHHVEAPKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDS 151 (264)
Q Consensus 103 ~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~-~~~~fvlk~DDD~~Vn~~~ 151 (264)
.++-++ .+...+..-... ...++.+.+. ..++|++.+|-|=|+.++.
T Consensus 41 ~~v~i~-~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 41 PGVGII-RWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCcEEE-EeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 444433 445556543333 3344444444 6899999999999998654
No 68
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=48.52 E-value=1.4e+02 Score=28.75 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=54.1
Q ss_pred hhhHhHHhhCCCeeE---eCCCCCCCCC-----c--hHHHHHHHHHHHhc----CCceeEEEecCeeEEeHHHHHHHHhc
Q 024690 93 QDIDSENKQTNDFFI---LDHHVEAPKE-----F--PNKAKLFFAYAVDK----WDAEYYAKVNDDVYVNIDSLGATLAT 158 (264)
Q Consensus 93 ~~l~~E~~~~~DIl~---~~d~~D~y~n-----l--~~K~~~~l~w~~~~----~~~~fvlk~DDD~~Vn~~~L~~~L~~ 158 (264)
+...++++.|+|-+. .+++.+.... + -.|.-.-++|+.++ .+++.++.+.||.-+-++=+ +++..
T Consensus 136 ~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf-~Yf~~ 214 (434)
T PF03071_consen 136 EEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFF-EYFSA 214 (434)
T ss_dssp HHHHHHHHGGGGGSEEEE-S--S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHH-HHHHH
T ss_pred HHHHHHHHHhhhhheeeecCCcCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHH-HHHHH
Confidence 445667777865432 1222221111 0 13445556777665 36788999999999976543 33332
Q ss_pred c----CCCCceEEEEeecCcceecCCCCcccCC--ccccCCCCCccccccCCceeecHHHHHHHHH
Q 024690 159 H----LDKPRVYIGCMKSGDVFSEPGHKWYEPD--WWKFGDKKLYFRHASGEMYVISRALAKFISI 218 (264)
Q Consensus 159 ~----~~~~~~y~G~~~~~~p~r~~~~k~~vs~--~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~ 218 (264)
. ...+.+++-.-+++.- ....+.. .-.+|- -.|..|-|++|++++-..|..
T Consensus 215 ~~~ll~~D~sl~ciSawNdnG-----~~~~~~~~~~~~lyR----sdffpglGWml~r~~w~el~~ 271 (434)
T PF03071_consen 215 TLPLLENDPSLWCISAWNDNG-----KEHFVDDSRPSLLYR----SDFFPGLGWMLTRELWDELEP 271 (434)
T ss_dssp HHHHHHH-TTEEEEES--TT------BGGGS-TT-TT-EEE----ESS---SSEEEEHHHHHHHGG
T ss_pred HHHHHhcCCCeEEEEccccCC-----ccccccCCCccceEe----cccCCchHHHhhHHHHHhhcc
Confidence 1 2245676655333210 0111111 001332 235679999999999986653
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=44.66 E-value=2.5e+02 Score=25.64 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=64.0
Q ss_pred CCCceEEEEEECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhC----CCeeEe
Q 024690 33 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQT----NDFFIL 108 (264)
Q Consensus 33 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~----~DIl~~ 108 (264)
.+.+.+-|+|+.--....-.+.++++.........+ .......+++|-..+.+ ...+.+++-.+.+ .++-++
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~-~~~~~~EIIVVDDgStD---~T~~i~~~~~~~~~~~~~~i~vi 142 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRK-DPKFKYEIIIVNDGSKD---KTLKVAKDFWRQNINPNIDIRLL 142 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhcc-CCCCCEEEEEEeCCCCC---chHHHHHHHHHhcCCCCCcEEEE
Confidence 455567776765444333445666665432100000 01235677777655543 2222233222332 124433
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccC----CCCceEEEEe
Q 024690 109 DHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL----DKPRVYIGCM 170 (264)
Q Consensus 109 ~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~----~~~~~y~G~~ 170 (264)
... .|. .| -.+++....+...+|++.+|.|....++.+...++... +...+.+|..
T Consensus 143 -~~~---~N~-G~-~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR 202 (333)
T PTZ00260 143 -SLL---RNK-GK-GGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSR 202 (333)
T ss_pred -EcC---CCC-Ch-HHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeec
Confidence 222 221 12 22333344455689999999999999877666554432 2234667763
No 70
>PHA01631 hypothetical protein
Probab=44.47 E-value=81 Score=26.24 Aligned_cols=92 Identities=12% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCCeeEeCCCCCCCCCchHHHHHHHHHHHhc---CCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceec
Q 024690 102 TNDFFILDHHVEAPKEFPNKAKLFFAYAVDK---WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSE 178 (264)
Q Consensus 102 ~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~---~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~ 178 (264)
+.+|+.. .....++. ....-++..+.++ -+-+.++.+|.|++|+.-. .. .++..++.=|+. .+
T Consensus 39 ~~~Ii~~-~t~~e~Rr--~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP----A~- 104 (176)
T PHA01631 39 QEKIIWI-MTNTEIRW--LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW----LY- 104 (176)
T ss_pred CCceEEe-cccchhHH--HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee----ee-
Confidence 6677765 22222232 3333444555443 4678888999999997432 11 122233333331 11
Q ss_pred CCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHh
Q 024690 179 PGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISIN 219 (264)
Q Consensus 179 ~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~ 219 (264)
.|| .+..-+||.|--|++.+..+..|...
T Consensus 105 --~kp----------~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 --YDW----------ANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred --ecC----------CCcEEEEEccccEEeeHHHhHHHHHH
Confidence 111 23445899999999999999888753
No 71
>PRK10073 putative glycosyl transferase; Provisional
Probab=40.10 E-value=2.9e+02 Score=25.09 Aligned_cols=76 Identities=11% Similarity=-0.014 Sum_probs=45.5
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
.+.++.|-..+.+ ...+.+++-.+++..|.++ . .+ |.. .-.+.....+....+|++.+|+|-++.++.|.
T Consensus 35 ~~EIIiVdDgStD---~t~~i~~~~~~~~~~i~vi-~-~~---n~G--~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~ 104 (328)
T PRK10073 35 ALEIIIVNDGSTD---NSVEIAKHYAENYPHVRLL-H-QA---NAG--VSVARNTGLAVATGKYVAFPDADDVVYPTMYE 104 (328)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEE-E-CC---CCC--hHHHHHHHHHhCCCCEEEEECCCCccChhHHH
Confidence 4677777644433 2233333334455555544 2 11 211 23344555666788999999999999998887
Q ss_pred HHHhcc
Q 024690 154 ATLATH 159 (264)
Q Consensus 154 ~~L~~~ 159 (264)
..+...
T Consensus 105 ~l~~~~ 110 (328)
T PRK10073 105 TLMTMA 110 (328)
T ss_pred HHHHHH
Confidence 777653
No 72
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=38.30 E-value=1.7e+02 Score=27.94 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=56.3
Q ss_pred HHHHHHhccCccccccccCCCcEEEEEEeeecCCC-----Cc-cchhhhH---hHHhhCCCeeEeCCC---CCCCCCchH
Q 024690 53 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANR-----GD-SLDQDID---SENKQTNDFFILDHH---VEAPKEFPN 120 (264)
Q Consensus 53 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~-----~~-~~~~~l~---~E~~~~~DIl~~~d~---~D~y~nl~~ 120 (264)
+.-|+.|.+......... ...-+++-|.|....+ ++ -++..++ +=+++||=-++. +. .+.....+.
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fy-n~~~ld~~~p~~Wa 183 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFY-NMAHLDAEMAGFWA 183 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEe-ehhhcCcCCCcchh
Confidence 445667776542111110 1334677777766542 11 1122222 125677744444 33 234467788
Q ss_pred HHHHHHHHHHhcCCceeEEEecCeeEE
Q 024690 121 KAKLFFAYAVDKWDAEYYAKVNDDVYV 147 (264)
Q Consensus 121 K~~~~l~w~~~~~~~~fvlk~DDD~~V 147 (264)
|.-+..+-+.++++++||.=+|.|+++
T Consensus 184 KlpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 184 KLPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 999999999999999999999999988
No 73
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=37.92 E-value=34 Score=30.07 Aligned_cols=99 Identities=12% Similarity=0.205 Sum_probs=52.5
Q ss_pred CceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceec-CCCCccc-CCccccCCCCCccccccCCceeecHH
Q 024690 134 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSE-PGHKWYE-PDWWKFGDKKLYFRHASGEMYVISRA 211 (264)
Q Consensus 134 ~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~-~~~k~~v-s~~~~~y~~~~yP~y~~G~gyvlS~~ 211 (264)
..+-|+-+|||+.++.+.|.-.+......+.-.+|....... .+ ..++|-. +.+ . ..|- ....++-++.+.
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~-~~~~~~~~~Y~~~~-~----~~yS-mvLt~aaf~h~~ 147 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHS-WDPSSGRWKYTSEW-S----NEYS-MVLTGAAFYHRY 147 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEE-EE-ETTEEEEE-SS-S------BS-EE-TTEEEEETH
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceee-cCCCccccccccCC-C----Ccch-hhhhhhHhhcch
Confidence 568899999999999999988887776666667887532111 12 2455533 222 1 1221 123344455555
Q ss_pred HHHHHHHhcc-----c-cCCCCcchHHHHHHHhh
Q 024690 212 LAKFISINRS-----I-LRTYAHDDVSAGSWFLG 239 (264)
Q Consensus 212 ~v~~l~~~~~-----~-~~~~~~EDv~iG~~l~~ 239 (264)
....-..... . -..++=||+.+-.++..
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~ 181 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVSN 181 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 5443222100 0 12357899999877753
No 74
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=32.42 E-value=24 Score=29.04 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=43.3
Q ss_pred ceeEEEecCeeEEeHHHHHHHHhccCCCCce--EEEEeecCcceecCCCCcccC----Cccc------cCCCCCcccccc
Q 024690 135 AEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGDVFSEPGHKWYEP----DWWK------FGDKKLYFRHAS 202 (264)
Q Consensus 135 ~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~~~~p~r~~~~k~~vs----~~~~------~y~~~~yP~y~~ 202 (264)
.+|++.+|.|+.+.++.|........ .+.+ ..|.+. ..+...+|... +++. ......-..+++
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~----~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVR----MYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLG 164 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEE----EecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEEC
Confidence 47999999999999999888655443 2222 222221 12223333211 1100 000001122368
Q ss_pred CCceeecHHHHHHH
Q 024690 203 GEMYVISRALAKFI 216 (264)
Q Consensus 203 G~gyvlS~~~v~~l 216 (264)
|.|.++++++++.+
T Consensus 165 G~~~~~r~~~l~~v 178 (191)
T cd06436 165 GNGQFMRLSALDGL 178 (191)
T ss_pred CeeEEEeHHHHHHh
Confidence 99999999999988
No 75
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=31.17 E-value=3.6e+02 Score=24.23 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=53.2
Q ss_pred CCcEEEEEEeeecCCCCccchhhhHhH----------HhhCCCeeEe-CCCCCCC--------C----CchHHHHHHH-H
Q 024690 72 EKGIITRFVIGRSANRGDSLDQDIDSE----------NKQTNDFFIL-DHHVEAP--------K----EFPNKAKLFF-A 127 (264)
Q Consensus 72 ~~~v~~~FvvG~~~~~~~~~~~~l~~E----------~~~~~DIl~~-~d~~D~y--------~----nl~~K~~~~l-~ 127 (264)
...|.+-|+++.+... +...+.|+.+ ...|+.|.++ .||.+.- . ..-++.++-. .
T Consensus 54 ~~lIsLgfLv~d~~e~-d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSEF-DNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCchh-HHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 3568999999998732 2334444433 3456676655 3453321 0 1111222211 3
Q ss_pred HHHhc---CCceeEEEecCeeEEeHHHHHHHHhccC
Q 024690 128 YAVDK---WDAEYYAKVNDDVYVNIDSLGATLATHL 160 (264)
Q Consensus 128 w~~~~---~~~~fvlk~DDD~~Vn~~~L~~~L~~~~ 160 (264)
|+..+ +..+||+-.|-|+.-.++.|++-|-..+
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 33333 5789999999999999999999887754
No 76
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=27.64 E-value=2.2e+02 Score=25.84 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.3
Q ss_pred CceeEEEecCeeEEeHHHH
Q 024690 134 DAEYYAKVNDDVYVNIDSL 152 (264)
Q Consensus 134 ~~~fvlk~DDD~~Vn~~~L 152 (264)
.++|++-..||+.....=+
T Consensus 169 ~~~YyL~LEDDVia~~~f~ 187 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFL 187 (297)
T ss_pred cCCeEEEecCCeEechhHH
Confidence 5789999999998876533
No 77
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=27.38 E-value=1.1e+02 Score=28.11 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=47.0
Q ss_pred hHHHHHHHH--HHHhc--CCceeEEEecCeeEEeH-HHHHHHHhccCCCCceEEEEee---cCcceecCCCCcccCCccc
Q 024690 119 PNKAKLFFA--YAVDK--WDAEYYAKVNDDVYVNI-DSLGATLATHLDKPRVYIGCMK---SGDVFSEPGHKWYEPDWWK 190 (264)
Q Consensus 119 ~~K~~~~l~--w~~~~--~~~~fvlk~DDD~~Vn~-~~L~~~L~~~~~~~~~y~G~~~---~~~p~r~~~~k~~vs~~~~ 190 (264)
..+.+..|+ +..+. ...+|++-++||+.++. ..+...+.....+ .+.+=.+. .++..|. -++..
T Consensus 97 ia~HlsLWes~~~~~~k~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~n-~idilQLre~~~~~~~~~-----~~~~~-- 168 (323)
T PHA02688 97 IARHLSLWESYANADIKDKEDEYIVVVEDDNTLRDITTLHPIIKAMKEK-NIDILQLRETLHNNNVRT-----LLNQE-- 168 (323)
T ss_pred HHHHHHHHHhhccCCccccCCCeEEEEcCCCcccccHHHHHHHHHHHhc-CeEEEEeehhhhCCcccc-----cccCC--
Confidence 445566666 33222 35789999999999883 3333333333222 23333321 1211111 11100
Q ss_pred cCCCCCccccccC-----CceeecHHHHHHHHHh
Q 024690 191 FGDKKLYFRHASG-----EMYVISRALAKFISIN 219 (264)
Q Consensus 191 ~y~~~~yP~y~~G-----~gyvlS~~~v~~l~~~ 219 (264)
..+..-.|-+| ++|+++...+.+|+..
T Consensus 169 --~~~~~~~Y~ggydvSLsAYIIr~~~a~kl~~~ 200 (323)
T PHA02688 169 --GNPALYSYTGGYDVSLSAYIIRVSTAKKLYDE 200 (323)
T ss_pred --CCcceEEecCCcceeeEEEEEeHHHHHHHHHH
Confidence 01112223344 8999999999999874
No 78
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=25.45 E-value=92 Score=26.31 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhcc
Q 024690 123 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH 159 (264)
Q Consensus 123 ~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~ 159 (264)
-.+.+++.+.+..+|++.+|+|..+.++.+...+...
T Consensus 60 ~~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 60 GAQRNFALELATNDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 3556777777888899999999999888777666554
No 79
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=25.25 E-value=89 Score=27.26 Aligned_cols=31 Identities=16% Similarity=-0.026 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHhcCCceeEEEecCeeEEe
Q 024690 118 FPNKAKLFFAYAVDKWDAEYYAKVNDDVYVN 148 (264)
Q Consensus 118 l~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn 148 (264)
...|..+.-+.+.++|+++||+-+|.|+++.
T Consensus 60 ~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 60 SWAKIPALRAAMKKYPEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHTHHHHHHHHHHH-TT-SEEEEE-TTEEE-
T ss_pred hhHHHHHHHHHHHhCCCCCEEEEEcCCeEEE
Confidence 3678888888889999999999999999885
No 80
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=24.80 E-value=96 Score=28.65 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhc-CCceeEEEecCeeEEeHHHHHHHHhc
Q 024690 120 NKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLAT 158 (264)
Q Consensus 120 ~K~~~~l~w~~~~-~~~~fvlk~DDD~~Vn~~~L~~~L~~ 158 (264)
.+....+.|+... +..+|++|+|.|-......|....-.
T Consensus 160 n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 160 NSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred hhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 3566778888887 67899999999999999999876643
No 81
>COG5454 Predicted secreted protein [Function unknown]
Probab=23.73 E-value=43 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=18.6
Q ss_pred EEECCCCChh-HHHHHHHHhccCc
Q 024690 41 GILTRFGRKN-NRDAIRKAWMGTG 63 (264)
Q Consensus 41 ~V~S~~~~~~-rR~aIR~TW~~~~ 63 (264)
.|.|+|.+.. .|..||.||++..
T Consensus 39 tv~sAP~~p~~~R~vl~TT~~sav 62 (89)
T COG5454 39 TVPSAPANPHLLRAVLRTTVASAV 62 (89)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHH
Confidence 3789997664 7999999999853
No 82
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=23.56 E-value=3.1e+02 Score=23.90 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHHHHhc---CCceeEEEecCeeEEeHHHHHHHHhcc
Q 024690 123 KLFFAYAVDK---WDAEYYAKVNDDVYVNIDSLGATLATH 159 (264)
Q Consensus 123 ~~~l~w~~~~---~~~~fvlk~DDD~~Vn~~~L~~~L~~~ 159 (264)
-.+|+|+.+| -..--|.++|||.-..++-+.+ ++..
T Consensus 81 n~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~e-mR~i 119 (223)
T cd00218 81 NLALRWIREHLSAKLDGVVYFADDDNTYDLELFEE-MRKI 119 (223)
T ss_pred HHHHHHHHhccccCcceEEEEccCCCcccHHHHHH-Hhcc
Confidence 4789999998 3456799999999888874444 7664
No 83
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=21.04 E-value=98 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 123 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 123 ~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
-.+++.+.+..+++|++.+.||+++.-++++
T Consensus 43 ~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l 73 (217)
T PF13712_consen 43 AAAYNEAMEKAKAKYLVFLHQDVFIINENWL 73 (217)
T ss_dssp TTHHHHHGGG--SSEEEEEETTEE-SSHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEeCCeEEcchhHH
Confidence 4577888888899999999999999744433
Done!