Query 024690
Match_columns 264
No_of_seqs 162 out of 1139
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 100.0 1.4E-27 4.8E-32 212.8 16.8 197 32-255 9-217 (280)
2 1xhb_A Polypeptide N-acetylgal 96.3 0.18 6.2E-06 46.6 16.7 168 75-250 62-255 (472)
3 2d7i_A Polypeptide N-acetylgal 95.9 0.24 8.3E-06 47.3 16.1 159 75-241 145-324 (570)
4 1qg8_A Protein (spore coat pol 95.9 0.45 1.5E-05 39.5 15.8 161 74-248 30-209 (255)
5 2ffu_A Ppgalnact-2, polypeptid 95.1 1 3.5E-05 41.9 16.8 166 75-252 99-289 (501)
6 3bcv_A Putative glycosyltransf 94.9 0.63 2.1E-05 38.1 13.4 164 74-248 34-220 (240)
7 2z86_A Chondroitin synthase; G 94.4 2.2 7.5E-05 40.7 17.5 131 124-254 164-331 (625)
8 4fix_A UDP-galactofuranosyl tr 94.0 1.2 4.2E-05 43.3 15.1 129 124-254 258-418 (657)
9 4hg6_A Cellulose synthase subu 91.8 3.4 0.00012 41.1 14.8 132 120-255 225-370 (802)
10 2z86_A Chondroitin synthase; G 91.0 3 0.0001 39.7 13.1 156 74-247 404-566 (625)
11 2bo4_A Mannosylglycerate synth 63.7 15 0.00051 33.4 6.8 166 75-245 29-209 (397)
12 3ckj_A Putative uncharacterize 54.3 69 0.0024 27.5 9.4 92 125-216 122-228 (329)
13 1fo8_A Alpha-1,3-mannosyl-glyc 47.7 25 0.00087 31.2 5.4 87 124-217 89-178 (343)
14 3l7i_A Teichoic acid biosynthe 40.5 5.9 0.0002 38.7 0.0 115 124-245 73-197 (729)
15 1v84_A Galactosylgalactosylxyl 29.5 1.4E+02 0.0049 25.2 6.9 116 122-245 89-219 (253)
16 2c0n_A A197; thermophil protei 28.9 2.4E+02 0.0081 23.1 9.2 134 92-238 14-159 (203)
17 2l82_A Designed protein OR32; 26.4 50 0.0017 24.5 3.0 54 42-108 55-108 (162)
18 1omz_A Alpha-1,4-N-acetylhexos 24.4 65 0.0022 28.0 4.0 37 134-170 106-142 (293)
19 4g1a_A AQ-C16C19 peptide; heli 22.3 20 0.00067 19.8 0.1 16 2-17 7-22 (32)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.95 E-value=1.4e-27 Score=212.80 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=134.3
Q ss_pred CCCCceEEEEEECCCC-ChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCC
Q 024690 32 PKKRPLVVIGILTRFG-RKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDH 110 (264)
Q Consensus 32 ~~~~~~lli~V~S~~~-~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d 110 (264)
....-.|+|+|+|+++ +.+||++||+||++.... .+|+.+...+ +.+... ..+++++ .+
T Consensus 9 ~~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-----------~~fifsd~~d------~~l~~~--~~~~~~~-~~ 68 (280)
T 2j0a_A 9 ELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-----------QTFIFTDSPD------ERLQER--LGPHLVV-TQ 68 (280)
T ss_dssp CCCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-----------GEEEEESSCC------HHHHHH--HGGGEEE-CC
T ss_pred CCCcccEEEEEECcHHHHHHHHHHHHHHHhccCCC-----------ceEEEcCCCc------cccccc--cccccee-cc
Confidence 3456679999999998 557889999999987531 1233332222 223322 2456664 36
Q ss_pred CCC--CCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeecCcceecCCCCcccCCc
Q 024690 111 HVE--APKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDW 188 (264)
Q Consensus 111 ~~D--~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~ 188 (264)
+.+ ++.+++.|+...+++... .+++|++|+|||+||++++|+++|...+++.++|+|+.....|+|. +++++.+
T Consensus 69 ~~~~~~~~~l~~K~~~~~~~~l~-~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~---~~~~~~~ 144 (280)
T 2j0a_A 69 CSAEHSHPALSCKMAAEFDAFLV-SGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHA---SELQSKQ 144 (280)
T ss_dssp C-------CCCHHHHHHHHHHHH-HTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC----------------
T ss_pred ccccccccchHHHHHHHHHHHhC-CCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccc---cccCccc
Confidence 644 577899999998887542 4899999999999999999999999999999999999766666653 3444432
Q ss_pred cccCCCCCccccc-cCCceeecHHHHHHHHHhcccc-------CCCCcchHHHHHHHh-hCCCeEecCCCeeeCCC
Q 024690 189 WKFGDKKLYFRHA-SGEMYVISRALAKFISINRSIL-------RTYAHDDVSAGSWFL-GLDVKYLNEGKFCCSSW 255 (264)
Q Consensus 189 ~~~y~~~~yP~y~-~G~gyvlS~~~v~~l~~~~~~~-------~~~~~EDv~iG~~l~-~l~v~~~~~~~f~~~~~ 255 (264)
.++...| +|| +|+||+||++++++|+...... .....||+++|+|+. .+||.+.+.++|+.+.+
T Consensus 145 --~~~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~ 217 (280)
T 2j0a_A 145 --RTKLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLE 217 (280)
T ss_dssp --------C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSS
T ss_pred --ccccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCc
Confidence 2222345 466 5689999999999999754332 223479999999998 99999999999999886
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=96.29 E-value=0.18 Score=46.59 Aligned_cols=168 Identities=11% Similarity=0.054 Sum_probs=89.6
Q ss_pred EEEEEEeeecCCCCccchhhhHhHHhhCC-CeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 75 IITRFVIGRSANRGDSLDQDIDSENKQTN-DFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 75 v~~~FvvG~~~~~~~~~~~~l~~E~~~~~-DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
..++.|-..+.+ +...+.+++-.+.+. .|.++ ...+ |.. .-.+.....++...+|++..|+|+.+.++.|.
T Consensus 62 ~EIIvVDd~S~d--~~t~~~l~~~~~~~~~~v~vi-~~~~---n~G--~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~ 133 (472)
T 1xhb_A 62 EEIVLVDDASER--DFLKRPLESYVKKLKVPVHVI-RMEQ---RSG--LIRARLKGAAVSRGQVITFLDAHCECTAGWLE 133 (472)
T ss_dssp EEEEEEECSCCC--GGGTHHHHHHHHSSSSCEEEE-ECSS---CCC--HHHHHHHHHHHCCSSEEEEEESSEEECTTCHH
T ss_pred eEEEEEECCCCc--HHHHHHHHHHHHHCCCcEEEE-ECCC---CCC--hHHHHHHHHHhccCCeEEEECCCeEeCccHHH
Confidence 456666544432 134445555556666 45544 2222 222 33455556666778999999999999988887
Q ss_pred HHHhccCCCCc-eEEEEee--c-CcceecCCC-------CcccCCcccc------------CCCCCccccccCCceeecH
Q 024690 154 ATLATHLDKPR-VYIGCMK--S-GDVFSEPGH-------KWYEPDWWKF------------GDKKLYFRHASGEMYVISR 210 (264)
Q Consensus 154 ~~L~~~~~~~~-~y~G~~~--~-~~p~r~~~~-------k~~vs~~~~~------------y~~~~yP~y~~G~gyvlS~ 210 (264)
.++......+. ..+|.+. . +.......+ .|.....|.. ......-+++.|+++++++
T Consensus 134 ~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr 213 (472)
T 1xhb_A 134 PLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDR 213 (472)
T ss_dssp HHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEH
T ss_pred HHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEH
Confidence 77765532222 3333321 1 110000000 0110000000 0012234578899999999
Q ss_pred HHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCe
Q 024690 211 ALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKF 250 (264)
Q Consensus 211 ~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f 250 (264)
++.+.+---.+.+..+..||+-++.-+...| +..+...+.
T Consensus 214 ~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~~~v 255 (472)
T 1xhb_A 214 DYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHV 255 (472)
T ss_dssp HHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEccCcEE
Confidence 9999875433344444589999987666554 444444433
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=95.94 E-value=0.24 Score=47.31 Aligned_cols=159 Identities=9% Similarity=0.026 Sum_probs=84.4
Q ss_pred EEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHH
Q 024690 75 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 154 (264)
Q Consensus 75 v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~ 154 (264)
..++.|-..+.+ +.+.+.|++-.+.+..|.++ ....+ .+ ...+.....+....+||+..|+|+.+.++-|..
T Consensus 145 ~EIIVVDDgS~D--~tl~~~l~~~~~~~~~v~vi-~~~~n-~G----~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ 216 (570)
T 2d7i_A 145 AEIVLVDDFSDR--EHLKKPLEDYMALFPSVRIL-RTKKR-EG----LIRTRMLGASVATGDVITFLDSHCEANVNWLPP 216 (570)
T ss_dssp EEEEEEECSCCC--GGGTHHHHHHHTTSTTEEEE-ECSSC-CC----HHHHHHHHHHHCCSSEEEECCSSEEECTTCSHH
T ss_pred EEEEEEECCCCc--HHHHHHHHHHHHhCCeEEEE-ECCCC-CC----HHHHHHHHHHhcCCCEEEEEcCCccccccHHHH
Confidence 356666544433 22245555555666666655 22221 23 234445555556789999999999999877776
Q ss_pred HHhccCCCCceEEE-Eee--cCc--ceecC-CC------Ccc-----cCC----ccccCCCCCccccccCCceeecHHHH
Q 024690 155 TLATHLDKPRVYIG-CMK--SGD--VFSEP-GH------KWY-----EPD----WWKFGDKKLYFRHASGEMYVISRALA 213 (264)
Q Consensus 155 ~L~~~~~~~~~y~G-~~~--~~~--p~r~~-~~------k~~-----vs~----~~~~y~~~~yP~y~~G~gyvlS~~~v 213 (264)
++......+...+| .+. .+. ..+.. .. .|. .+. ....+....--+++.|+++++++++.
T Consensus 217 ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~ 296 (570)
T 2d7i_A 217 LLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWF 296 (570)
T ss_dssp HHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHH
T ss_pred HHHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHH
Confidence 66554322333333 221 110 01110 00 010 000 00000011223567899999999999
Q ss_pred HHHHHhccccCCCCcchHHHHHHHhhCC
Q 024690 214 KFISINRSILRTYAHDDVSAGSWFLGLD 241 (264)
Q Consensus 214 ~~l~~~~~~~~~~~~EDv~iG~~l~~l~ 241 (264)
+.+---...+..+..||+-+..-+...|
T Consensus 297 ~~iGgfDe~~~~~g~ED~dl~~Rl~~~G 324 (570)
T 2d7i_A 297 WELGGYDPGLEIWGGEQYEISFKVWMCG 324 (570)
T ss_dssp HHTTSSCTTCCSSSSHHHHHHHHHHHTT
T ss_pred HhcCCCCCcccccCcchHHHHHHHHhCC
Confidence 9885433333334479999987776555
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.87 E-value=0.45 Score=39.50 Aligned_cols=161 Identities=11% Similarity=-0.045 Sum_probs=88.1
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCC-----CCchHHHHHHHHHHHhcCCceeEEEecCeeEEe
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAP-----KEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVN 148 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y-----~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn 148 (264)
.+.++.+...+.+ . ...+.++......|.++ .....- .|.. .-.++..+.++.+.+|++..|+|.++.
T Consensus 30 ~~eiivvDd~S~d---~-t~~~~~~~~~~~~i~~i-~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~ 102 (255)
T 1qg8_A 30 DFELFIMDDNSNE---E-TLNVIRPFLNDNRVRFY-QSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYM 102 (255)
T ss_dssp CEEEEEEECSCCH---H-HHHHHGGGGGSTTEEEE-ECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEEC
T ss_pred ceEEEEEECCCCc---h-HHHHHHHHhhcCCEEEE-ecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccC
Confidence 4677777654432 2 22333444335566544 111000 2322 445667777778899999999999999
Q ss_pred HHHHHHHHhccC--CCCceEEEEee----c--CcceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHH-Hh
Q 024690 149 IDSLGATLATHL--DKPRVYIGCMK----S--GDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFIS-IN 219 (264)
Q Consensus 149 ~~~L~~~L~~~~--~~~~~y~G~~~----~--~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~-~~ 219 (264)
++.|...+.... +...+..|... . +.++.. +..+.. .. ......++.|++.++.+++++.+- .-
T Consensus 103 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~-~~--~~~~~~~~~~~~~~~rr~~~~~~g~~f 175 (255)
T 1qg8_A 103 PDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKE----TVRPAA-QV--TWNAPCAIDHCSVMHRYSVLEKVKEKF 175 (255)
T ss_dssp TTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEE----EEECCC-SC--BSCCTTTSCGGGEEEETHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcchhh----ccCchH-HH--HHhhcCCCccceEEEEHHHHHhhcccc
Confidence 888877776543 33344445432 1 111111 111111 01 013345678999999999999876 22
Q ss_pred ----ccccCCCCcchHHHHHHHhhCC-CeEecCC
Q 024690 220 ----RSILRTYAHDDVSAGSWFLGLD-VKYLNEG 248 (264)
Q Consensus 220 ----~~~~~~~~~EDv~iG~~l~~l~-v~~~~~~ 248 (264)
.........||..+..-+...+ +..++..
T Consensus 176 ~~~~~~~~~~~~~eD~~~~~r~~~~g~~~~~~~~ 209 (255)
T 1qg8_A 176 GSYWDESPAFYRIGDARFFWRVNHFYPFYPLDEE 209 (255)
T ss_dssp SSSSCCCGGGSTTHHHHHHHHHTTTCCBEEEEEE
T ss_pred cccccCCcccchHHHHHHHHHHHHhCCEEEecCc
Confidence 0112234589998876665333 4444443
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=95.07 E-value=1 Score=41.87 Aligned_cols=166 Identities=8% Similarity=0.033 Sum_probs=87.3
Q ss_pred EEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHH
Q 024690 75 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 154 (264)
Q Consensus 75 v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~ 154 (264)
..+++|-..+.+ ++ +....+.+..|.++ ... .|.. .-.++....+....+||+.+|+|+.+.++-|..
T Consensus 99 ~EIIvVDDgS~D--~t----~~~~~~~~~~v~vi-~~~---~n~G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ 166 (501)
T 2ffu_A 99 KEIILVDDYSND--PE----DGALLGKIEKVRVL-RND---RREG--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEP 166 (501)
T ss_dssp EEEEEEECSCSC--TH----HHHGGGGBTTEEEE-ECS---SCCH--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHH
T ss_pred eeEEEEECCCCc--hH----HHHHHhcCCCEEEE-ECC---CCcC--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHH
Confidence 467777654443 12 22223445666555 222 2322 345556666667889999999999999888877
Q ss_pred HHhccCCCCc-eEEEEee--c-Cc-ceec--C--CC--CcccCCccc----------c-C-CCCCccccccCCceeecHH
Q 024690 155 TLATHLDKPR-VYIGCMK--S-GD-VFSE--P--GH--KWYEPDWWK----------F-G-DKKLYFRHASGEMYVISRA 211 (264)
Q Consensus 155 ~L~~~~~~~~-~y~G~~~--~-~~-p~r~--~--~~--k~~vs~~~~----------~-y-~~~~yP~y~~G~gyvlS~~ 211 (264)
++......+. +..+.+. . .. .... . .+ .|.....|. . - ......+++.|++.+++++
T Consensus 167 ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 246 (501)
T 2ffu_A 167 LLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKF 246 (501)
T ss_dssp HHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHH
T ss_pred HHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHH
Confidence 7765432222 3333321 1 00 0000 0 00 010000000 0 0 0112345788999999999
Q ss_pred HHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCeee
Q 024690 212 LAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCC 252 (264)
Q Consensus 212 ~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~ 252 (264)
+.+.+-.-......+..||+-+..-+...| +..+...+..|
T Consensus 247 ~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H 289 (501)
T 2ffu_A 247 YFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGH 289 (501)
T ss_dssp HHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEccCcEEEE
Confidence 999886433344444589999986665454 44444333333
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=94.93 E-value=0.63 Score=38.12 Aligned_cols=164 Identities=13% Similarity=0.033 Sum_probs=82.3
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
.+.++.|-..+.+ ...+.+++-.+.+..|.++ . .+ |.. .-.+.....++...+|++.+|+|.++.++.|.
T Consensus 34 ~~eiIvvDd~S~d---~t~~~~~~~~~~~~~i~~i-~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~ 103 (240)
T 3bcv_A 34 DIEIILIDDESPD---NCPKICDDYAAQYPNIKVI-H-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYM 103 (240)
T ss_dssp SEEEEEEECCCSS---SHHHHHHHHHHHCSSEEEE-E-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHH
T ss_pred CeEEEEEECCCCc---CHHHHHHHHHhhCCCEEEE-E-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHH
Confidence 4677777654433 3344455445567777655 2 22 322 33455666666788999999999999988887
Q ss_pred HHHhccCC-CCceEEEEe-e---cCcc---eec-C-CCCcccCCcc-----ccCCCC-Cc---c-ccccCCceeecHHHH
Q 024690 154 ATLATHLD-KPRVYIGCM-K---SGDV---FSE-P-GHKWYEPDWW-----KFGDKK-LY---F-RHASGEMYVISRALA 213 (264)
Q Consensus 154 ~~L~~~~~-~~~~y~G~~-~---~~~p---~r~-~-~~k~~vs~~~-----~~y~~~-~y---P-~y~~G~gyvlS~~~v 213 (264)
..+..... ...+.+|.. . .+.+ +.. + ...++..... .+.... .+ + ...+|++.++.++++
T Consensus 104 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 104 TMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhhcchhhccccccccchhheeeeHHHH
Confidence 77765432 233433332 1 1110 000 0 0001100000 000000 00 0 114578899999999
Q ss_pred HHHH-HhccccCCCCcchHHHHHHHhhC--CCeEecCC
Q 024690 214 KFIS-INRSILRTYAHDDVSAGSWFLGL--DVKYLNEG 248 (264)
Q Consensus 214 ~~l~-~~~~~~~~~~~EDv~iG~~l~~l--~v~~~~~~ 248 (264)
+.+- .-.... .+..||..+..-+... .+..++..
T Consensus 184 ~~~g~~f~~~~-~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSER-ILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTT-TCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCC-CccCCCHHHHHHHHHhCCEEEEECCC
Confidence 8853 111111 2346999998766544 45555555
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=94.36 E-value=2.2 Score=40.67 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCC-ceEEEEe-e-cCcc------------eec----------
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKP-RVYIGCM-K-SGDV------------FSE---------- 178 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~-~~y~G~~-~-~~~p------------~r~---------- 178 (264)
.++..+.+....+|++..|+|..+.++.|...+......+ ...+|.. . .... .+.
T Consensus 164 ~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (625)
T 2z86_A 164 AVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQV 243 (625)
T ss_dssp HHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC-------
T ss_pred HHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCch
Confidence 4455556666889999999999999888877776543222 2333332 1 1000 000
Q ss_pred -------CCCCcccCCc---cccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCCC--eEec
Q 024690 179 -------PGHKWYEPDW---WKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDV--KYLN 246 (264)
Q Consensus 179 -------~~~k~~vs~~---~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~v--~~~~ 246 (264)
....|..... -.......-..++.|++.++++++++.+---...+..+..||..++.-+...|. ....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 323 (625)
T 2z86_A 244 AGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE 323 (625)
T ss_dssp --------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECG
T ss_pred hhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcc
Confidence 0000100000 000000111235789999999999998843223333334799999877765554 3344
Q ss_pred CCCeeeCC
Q 024690 247 EGKFCCSS 254 (264)
Q Consensus 247 ~~~f~~~~ 254 (264)
.....|..
T Consensus 324 ~~~v~H~~ 331 (625)
T 2z86_A 324 GAMAYHQE 331 (625)
T ss_dssp GGCEEEEC
T ss_pred cchhhccC
Confidence 44444433
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=94.02 E-value=1.2 Score=43.33 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccC--CCCceEEEEee-cCcc-eecCCCCccc---------CCc--
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMK-SGDV-FSEPGHKWYE---------PDW-- 188 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~--~~~~~y~G~~~-~~~p-~r~~~~k~~v---------s~~-- 188 (264)
.+++.+....+++||+..|||+.+.++.|...+.... +...+..|.+. ...+ .-...+.+.. +..
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 4566666545789999999999999888887776542 22223333332 1111 0000011100 000
Q ss_pred ---c------------ccCCCCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCee
Q 024690 189 ---W------------KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFC 251 (264)
Q Consensus 189 ---~------------~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~ 251 (264)
+ ..+.......|++|++.++.+++++.+--- .--.+..||+-++.-+...| +..+.+...+
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgf--d~~F~~~ED~Dl~lR~~~~G~ki~~~p~a~V~ 415 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQP--LPLFIKWDDADYGLRAAEHGYPTVTLPGAAIW 415 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSC--CSCSSSSHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCC--hhHhccCcHHHHHHHHHHcCCeEEEECCEEEE
Confidence 0 000112234688999999999999987422 11234579999997776555 4444555544
Q ss_pred eCC
Q 024690 252 CSS 254 (264)
Q Consensus 252 ~~~ 254 (264)
|..
T Consensus 416 H~~ 418 (657)
T 4fix_A 416 HMA 418 (657)
T ss_dssp ECC
T ss_pred EcC
Confidence 433
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=91.82 E-value=3.4 Score=41.12 Aligned_cols=132 Identities=12% Similarity=-0.055 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhcc--CCCCceEEEEee--cCcceecCCCCcc-cC-CccccCC
Q 024690 120 NKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH--LDKPRVYIGCMK--SGDVFSEPGHKWY-EP-DWWKFGD 193 (264)
Q Consensus 120 ~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~--~~~~~~y~G~~~--~~~p~r~~~~k~~-vs-~~~~~y~ 193 (264)
.|. ..++...+..+.+|++.+|+|+.+.++.|.+.+... ++.-....|... +..+.....+.+. .+ +...+|+
T Consensus 225 GKa-~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (802)
T 4hg6_A 225 AKA-GNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYG 303 (802)
T ss_dssp HHH-HHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHH
T ss_pred cch-HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHH
Confidence 443 356677777889999999999999998888877665 233233333321 1111100000000 00 0000000
Q ss_pred ------CCCccccccCCceeecHHHHHHHHHhccccCCCCcchHHHHHHHhhCC--CeEecCCCeeeCCC
Q 024690 194 ------KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCSSW 255 (264)
Q Consensus 194 ------~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~~EDv~iG~~l~~l~--v~~~~~~~f~~~~~ 255 (264)
...-.+++.|++.++.+++++.+---.. ..-.||..++.-+...| +..+++....+..+
T Consensus 304 ~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~---~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~~p 370 (802)
T 4hg6_A 304 KIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAG---ETITEDAETALEIHSRGWKSLYIDRAMIAGLQP 370 (802)
T ss_dssp THHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCC---SSSSHHHHHHHHHHTTTCCEEECCCCCEEECCC
T ss_pred HHHhhHhhcCCceecccchhhhHHHHHHcCCcCC---CCcchHHHHHHHHHHcCCeEEEecCCEEEecCC
Confidence 0011245789999999999998742211 12359999998887555 45556666655444
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=90.98 E-value=3 Score=39.71 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=83.1
Q ss_pred cEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEeCCCCCCCCCchHHHHHHHHHHHhcCCceeEEEecCeeEEeHHHHH
Q 024690 74 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 153 (264)
Q Consensus 74 ~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~~d~~D~y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~ 153 (264)
.+.++.+-..+.+ ...+.+++-.+.+..|.++ . + .|.. .-.++....+....+|++..|+|.++.++.|.
T Consensus 404 ~~eiivvdd~S~d---~t~~~~~~~~~~~~~i~~~-~--~--~n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~ 473 (625)
T 2z86_A 404 DLEVCICDDGSTD---DTLRILQEHYANHPRVRFI-S--Q--KNKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVE 473 (625)
T ss_dssp SEEEEEEEESCSS---SHHHHHHHHHTTCTTEEEE-E--E--CCCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHH
T ss_pred CeEEEEEECcCCh---hHHHHHHHHHhhCCcEEEE-e--C--CCCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHH
Confidence 4677777655543 3334444434555666555 2 1 2221 33455666666788999999999999998888
Q ss_pred HHHhcc--CCCCceEEEEee----cCcceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHhccccCCCC
Q 024690 154 ATLATH--LDKPRVYIGCMK----SGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYA 227 (264)
Q Consensus 154 ~~L~~~--~~~~~~y~G~~~----~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~~~~~~~ 227 (264)
..+... .+.-.+..|... .+..+... +..+. +........++.|++.++.+++.+.+-.-.. ....
T Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~ggfd~--~~~~ 545 (625)
T 2z86_A 474 LCLDEFRKDLSLACVYTTNRNIDREGNLISNG---YNWPI---YSREKLTSAMICHHFRMFTARAWNLTEGFNE--SISN 545 (625)
T ss_dssp HHHHHHHHCTTCSEEEEEEEEECTTSCEEEEC---CCCSS---CCHHHHTTSCCCCSCEEEEHHHHTTTTCCCS--SCSS
T ss_pred HHHHHHHhCCCeeEEEeeeEEECCCCCEeccC---ccccc---CCHHHHhhcccCCceEEEEHHHHHHhCCCCC--ccCC
Confidence 777654 232233333221 12222111 00110 0001112235677888999887765432111 2235
Q ss_pred cchHHHHHHHhhCC-CeEecC
Q 024690 228 HDDVSAGSWFLGLD-VKYLNE 247 (264)
Q Consensus 228 ~EDv~iG~~l~~l~-v~~~~~ 247 (264)
.||.-+..-+...| +..++.
T Consensus 546 ~eD~dl~~r~~~~g~~~~~~~ 566 (625)
T 2z86_A 546 AVDYDMYLKLSEVGPFKHINK 566 (625)
T ss_dssp CHHHHHHHHHTTTSCEEEEEE
T ss_pred hHHHHHHHHHHHhCCEEEeCC
Confidence 79998876665554 333333
No 11
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=63.70 E-value=15 Score=33.40 Aligned_cols=166 Identities=8% Similarity=-0.032 Sum_probs=84.3
Q ss_pred EEEEEEeeecCCCCccchhhhHhHHh-hCCC-eeEeCCCCC-C--CCCchHHHHHHHHHHHhcCCceeEEEecCeeE-Ee
Q 024690 75 IITRFVIGRSANRGDSLDQDIDSENK-QTND-FFILDHHVE-A--PKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVY-VN 148 (264)
Q Consensus 75 v~~~FvvG~~~~~~~~~~~~l~~E~~-~~~D-Il~~~d~~D-~--y~nl~~K~~~~l~w~~~~~~~~fvlk~DDD~~-Vn 148 (264)
..+++|-+.+.+.+.++.+.+..+.. .++. ++.+ .... . -.....=...+++|+......++++.+|-|.- .+
T Consensus 29 ~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~-~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 29 VHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVR-LQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFG 107 (397)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEE-ECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCC
T ss_pred eEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEE-ecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Confidence 46888887776531122222222332 3444 3322 1110 1 23445557788888875567899999999995 78
Q ss_pred HHHHHHHHhccCCCCceEEEEeec---CcceecCCCCcccCCccccCCCC--CccccccCCceeecHHHHHHHHHhc--c
Q 024690 149 IDSLGATLATHLDKPRVYIGCMKS---GDVFSEPGHKWYEPDWWKFGDKK--LYFRHASGEMYVISRALAKFISINR--S 221 (264)
Q Consensus 149 ~~~L~~~L~~~~~~~~~y~G~~~~---~~p~r~~~~k~~vs~~~~~y~~~--~yP~y~~G~gyvlS~~~v~~l~~~~--~ 221 (264)
+..+..+++...+.-.+.+|.... +..+.....++..+. +|+.. .......++.+++++++++.+.... .
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~---~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~ 184 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL---LWPHTELSWIEQPLGGELLMRREVAAMLYEDERVR 184 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH---HCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH---HHHHhhccccccCCcccEEEeHHHHHHHhhhcccC
Confidence 777777666543323566675321 111100001110000 12100 1222335677899999999886421 1
Q ss_pred ccCCCCcchHHHHHHHh--hCCCeEe
Q 024690 222 ILRTYAHDDVSAGSWFL--GLDVKYL 245 (264)
Q Consensus 222 ~~~~~~~EDv~iG~~l~--~l~v~~~ 245 (264)
....|. .|+.+...+. ++.|.-+
T Consensus 185 ~~~~fg-~eiel~~~a~~~G~rI~EV 209 (397)
T 2bo4_A 185 RRSDWG-IDTLYTFVTVQQGVSIYEC 209 (397)
T ss_dssp TCCSTT-HHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcc-hHHHHHHHHHHcCCEEEEE
Confidence 222333 3777765554 4445433
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=54.34 E-value=69 Score=27.47 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=49.8
Q ss_pred HHHHHHhcCCceeEEEecCeeE-EeHHHHHHHHhcc--CCCCceEEEEeec----Ccc----eecCCCCcc---cCCcc-
Q 024690 125 FFAYAVDKWDAEYYAKVNDDVY-VNIDSLGATLATH--LDKPRVYIGCMKS----GDV----FSEPGHKWY---EPDWW- 189 (264)
Q Consensus 125 ~l~w~~~~~~~~fvlk~DDD~~-Vn~~~L~~~L~~~--~~~~~~y~G~~~~----~~p----~r~~~~k~~---vs~~~- 189 (264)
++....+..+.+|++.+|+|.. +.++.|...+... ++.-.+..|.... +.. .+...++.. .....
T Consensus 122 a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (329)
T 3ckj_A 122 ALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPLLA 201 (329)
T ss_dssp HHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEECC---------------CHHHHHTHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEecccccCCcccccccccCCCceehhhHHHHHH
Confidence 3445555667899999999999 8888887777652 2334566676421 100 111111110 00000
Q ss_pred ccCCCCCccccccCCceeecHHHHHHH
Q 024690 190 KFGDKKLYFRHASGEMYVISRALAKFI 216 (264)
Q Consensus 190 ~~y~~~~yP~y~~G~gyvlS~~~v~~l 216 (264)
..++.-.-..++.|+.+++++++++.+
T Consensus 202 ~~~~~~~~~~~~~~g~~~~rr~~l~~i 228 (329)
T 3ckj_A 202 ALRPELGCILQPLGGEYAATRELLTSV 228 (329)
T ss_dssp HHCGGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred HhhhhhccccCCCccceeeeHHHHHhC
Confidence 011111112456788899999999876
No 13
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=47.72 E-value=25 Score=31.21 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHH---HHHhccCCCCceEEEEeecCcceecCCCCcccCCccccCCCCCcccc
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLG---ATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRH 200 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~---~~L~~~~~~~~~y~G~~~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y 200 (264)
.++.++-+..++++++.+|||+.+.++=+. +.|..+...+++++=+-.+.......... ..+.. + .+-.|
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~~~-~~~~~--l----yrs~~ 161 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDS-SKPEL--L----YRTDF 161 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSCT-TCTTC--E----EEESS
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCccccccccc-cCcce--E----EeecC
Confidence 455555554579999999999999886442 22322223345543221111100000000 00110 1 22345
Q ss_pred ccCCceeecHHHHHHHH
Q 024690 201 ASGEMYVISRALAKFIS 217 (264)
Q Consensus 201 ~~G~gyvlS~~~v~~l~ 217 (264)
..|.|+++++++-+.+-
T Consensus 162 f~~wGWa~wr~~W~e~~ 178 (343)
T 1fo8_A 162 FPGLGWLLLAELWAELE 178 (343)
T ss_dssp CCCSSEEEEHHHHHHHG
T ss_pred CCchhhhhcHHHHHHHh
Confidence 67899999999998654
No 14
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=40.51 E-value=5.9 Score=38.68 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEee---cC-cceecC---CCCcccCCccccCCCCC
Q 024690 124 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMK---SG-DVFSEP---GHKWYEPDWWKFGDKKL 196 (264)
Q Consensus 124 ~~l~w~~~~~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~---~~-~p~r~~---~~k~~vs~~~~~y~~~~ 196 (264)
.+.....+....+|++.+|+|.++.++.|...+.... ...+.+|... .. ...... ...|+.... ++ ..
T Consensus 73 ~arN~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~ 147 (729)
T 3l7i_A 73 HARNIALEEVETPYFMFLDADDELASYAITFYLEKFN-NTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKE---NI-NS 147 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhccCCEEEEECCCCCCChhHHHHHHHHhc-CCCEEEEeeEEeecCCCccccccceeeeeecchh---hH-HH
Confidence 3444555556789999999999999988888877765 3334333321 11 111000 011111110 01 11
Q ss_pred ccccccCCceeecHHHHHHHH-HhccccCCCCcchHHHHHHHh--hCCCeEe
Q 024690 197 YFRHASGEMYVISRALAKFIS-INRSILRTYAHDDVSAGSWFL--GLDVKYL 245 (264)
Q Consensus 197 yP~y~~G~gyvlS~~~v~~l~-~~~~~~~~~~~EDv~iG~~l~--~l~v~~~ 245 (264)
+-..+.|++.++.+++++.+- .-...+ ...||..+..-+. +..+..+
T Consensus 148 ~~~~~~~~~~~~rr~~l~~~gl~fde~~--~~~ED~d~~~rl~~~g~~i~~~ 197 (729)
T 3l7i_A 148 FLRKQSACNIIFRTAIVRAHHIRFNENL--NTYVDWSFVLEYMKYVNKFVRI 197 (729)
T ss_dssp ----------------------------------------------------
T ss_pred HhhccchhheeeeHHHHHHcCCCcCCCC--CcccCHHHHHHHHHhcCCEEEe
Confidence 222446777888888887653 111121 2479987765443 3344444
No 15
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=29.47 E-value=1.4e+02 Score=25.22 Aligned_cols=116 Identities=6% Similarity=-0.030 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcC-----CceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEeec---CcceecCCCC---cccCCccc
Q 024690 122 AKLFFAYAVDKW-----DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKS---GDVFSEPGHK---WYEPDWWK 190 (264)
Q Consensus 122 ~~~~l~w~~~~~-----~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~---~~p~r~~~~k---~~vs~~~~ 190 (264)
--.+|+|+.++. ..--|+++|||.-..+.-+ +.++....-.---+|.+.. ..|+-++++| |+....
T Consensus 89 Rn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF-~emR~i~~vgvWPVglvg~~~~EgPv~~~~gkVvGw~~~w~-- 165 (253)
T 1v84_A 89 RNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELF-EEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRWKTVFD-- 165 (253)
T ss_dssp HHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHH-HHHHTCSSEEECCEESCTTSSEEEEEECTTSCEEEEECSSC--
T ss_pred HHHHHHHHHHhcccccccceeEEEecCCCcccHHHH-HHHhccCeeEEEEEEeecCcceecCeECCCCCEeeeecccC--
Confidence 356899998852 3467899999999988754 4466543100001122211 1355554566 665421
Q ss_pred cCCCCCccccccCCceeecHHHHHHHHHhc-cc---cCCCCcchHHHHHHHhhCCCeEe
Q 024690 191 FGDKKLYFRHASGEMYVISRALAKFISINR-SI---LRTYAHDDVSAGSWFLGLDVKYL 245 (264)
Q Consensus 191 ~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~-~~---~~~~~~EDv~iG~~l~~l~v~~~ 245 (264)
|.-.||- .=+||+++..++-. ...+ .. .+.-..|+.++..+...-++++.
T Consensus 166 --~~R~fpi--DmAGFA~N~~lll~-~p~a~~~~~~~~~g~~Es~fL~~l~~~~~lEp~ 219 (253)
T 1v84_A 166 --PHRPFAI--DMAGFAVNLRLILQ-RSQAYFKLRGVKGGYQESSLLRELVTLNDLEPK 219 (253)
T ss_dssp --TTSTTCC--CGGGEEEEHHHHHH-STTCCCCSSSSCTTCHHHHHHHHHCCGGGEEEC
T ss_pred --CCCCccc--eeeeeEEEehhhhh-CCCceeccccCCCcchhhHHHHhhhhHhhcEec
Confidence 2334443 33679999886532 1111 11 12223677777766533345554
No 16
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=28.90 E-value=2.4e+02 Score=23.06 Aligned_cols=134 Identities=11% Similarity=-0.014 Sum_probs=74.1
Q ss_pred hhhhHhHHhhCC-CeeEeCCCCCCCCCchH-HHHHHHHHHHhcCCceeEEEecCe---eEEeHHHHHHHHhccCCCCceE
Q 024690 92 DQDIDSENKQTN-DFFILDHHVEAPKEFPN-KAKLFFAYAVDKWDAEYYAKVNDD---VYVNIDSLGATLATHLDKPRVY 166 (264)
Q Consensus 92 ~~~l~~E~~~~~-DIl~~~d~~D~y~nl~~-K~~~~l~w~~~~~~~~fvlk~DDD---~~Vn~~~L~~~L~~~~~~~~~y 166 (264)
.-.|+.+..+.| ++. + .+.++ .++. ...+.=.|+. ..++++++.+|-| +-.+++.+.++|+. ..++.
T Consensus 14 ~l~l~~~l~~~gi~~~-l-~~~~S--lI~raRN~lv~~Fl~-~~~~dhllfIDAD~~~I~FdPe~V~rLl~~---g~DVV 85 (203)
T 2c0n_A 14 RLPLIDFLVKNDIEYV-I-LSRRN--HVAVQREIALDMFLE-MKDYDTLAFLDEDVVPIEIDFQKVEAKFNE---GYDVV 85 (203)
T ss_dssp CHHHHHHHHHTTCCEE-E-ECCCS--CHHHHHHHHHHHHHH-CTTCCEEEEECTTEEEEECCHHHHHHHHHH---TCSEE
T ss_pred ehHHHHHHHhCCCeEE-E-Ecccc--chHHHHHHHHHHHHh-cCCCCEEEEEeCCCCccccCHHHHHHHHhC---CCCEE
Confidence 345666666666 443 3 33332 2222 2222223433 4578999999999 99999999999955 23678
Q ss_pred EEEe-ecCcceecCCCCcccCCccccCCCCCccccccCCceeecHHHHHHHHHhcc------ccCCCCcchHHHHHHHh
Q 024690 167 IGCM-KSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRS------ILRTYAHDDVSAGSWFL 238 (264)
Q Consensus 167 ~G~~-~~~~p~r~~~~k~~vs~~~~~y~~~~yP~y~~G~gyvlS~~~v~~l~~~~~------~~~~~~~EDv~iG~~l~ 238 (264)
+|.. ..+-..-....+.|.-. ..+ .=-.||..|+.+++|++++.|....- ..+.+--||+++=.-+.
T Consensus 86 ~GsYp~K~~~~~s~~a~~y~~~---i~~--~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~k 159 (203)
T 2c0n_A 86 CGYYYLKTLRGYSVYRKDWEKE---IFD--GEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHK 159 (203)
T ss_dssp EEECBCTTSSSBSEESSSBCSS---CCC--EECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHHC
T ss_pred EEEeeccCCCccchHHHHHHHh---ccC--ceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEeccc
Confidence 8873 22200000001122211 111 12358889999999999999864311 12223359998855554
No 17
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.35 E-value=50 Score=24.53 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=33.4
Q ss_pred EECCCCChhHHHHHHHHhccCccccccccCCCcEEEEEEeeecCCCCccchhhhHhHHhhCCCeeEe
Q 024690 42 ILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFIL 108 (264)
Q Consensus 42 V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvvG~~~~~~~~~~~~l~~E~~~~~DIl~~ 108 (264)
|.|-....+-|..||+.|-.... ..++-++... + .++....-+|++.-|=-+++
T Consensus 55 vrtvedkedfrenireiwerypq----------ldvvvivttd-d--kewikdfieeakergvevfv 108 (162)
T 2l82_A 55 VRTVEDKEDFRENIREIWERYPQ----------LDVVVIVTTD-D--KEWIKDFIEEAKERGVEVFV 108 (162)
T ss_dssp EEECCSHHHHHHHHHHHHHHCTT----------CCEEEEEECC-C--HHHHHHHHHHHHHTTCEEEE
T ss_pred eeeeccHHHHHHHHHHHHHhCCC----------CcEEEEEecC-c--HHHHHHHHHHHHhcCcEEEE
Confidence 44455556678899999998752 2344444332 2 46667777888887754433
No 18
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=24.41 E-value=65 Score=27.97 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=30.4
Q ss_pred CceeEEEecCeeEEeHHHHHHHHhccCCCCceEEEEe
Q 024690 134 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCM 170 (264)
Q Consensus 134 ~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~ 170 (264)
..+-|+-+|||+.++.+.|.-.+......+.-.+|..
T Consensus 106 ~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~ 142 (293)
T 1omz_A 106 ETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142 (293)
T ss_dssp CSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESC
T ss_pred CcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCc
Confidence 5788999999999999999887777665566678875
No 19
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=22.27 E-value=20 Score=19.75 Aligned_cols=16 Identities=44% Similarity=0.470 Sum_probs=11.8
Q ss_pred cchhhhhhhhhhhhhc
Q 024690 2 QKLLELEMQLAAAGQE 17 (264)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (264)
||+..||..|||.+++
T Consensus 7 qkiaaleqkcaaceqk 22 (32)
T 4g1a_A 7 QKIAALEQKCAACEQK 22 (32)
T ss_dssp HHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888887764
Done!