BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024691
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVL 117
RAC DP P IDGR+AN NLA LG +P+V+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRVM 95
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 32/154 (20%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P ++ +G T G QQ
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG----------AKPRSIQTGFT----------IGVQQ- 105
Query: 148 LPYNYQQGMVYPSYGYATYG--PEYVYPQGIYNP 179
++P++ +G P YVYPQ I P
Sbjct: 106 ---------LHPAFIQRPFGLTPHYVYPQAIIQP 130
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+++ DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLG-RPR 113
+ AA RAC DP P IDGR+AN NLA LG +PR
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 89/154 (57%), Gaps = 32/154 (20%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P +L +G + G QQ
Sbjct: 90 RACKDPNPIIDGRKANVNLAYLG----------AKPRSLQTGF----------AIGVQQ- 128
Query: 148 LPYNYQQGMVYPSYGYATYG--PEYVYPQGIYNP 179
++P+ TYG P Y+YP I P
Sbjct: 129 ---------LHPTLIQRTYGLTPHYIYPPAIVQP 153
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ T +S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 96/175 (54%), Gaps = 38/175 (21%)
Query: 7 PGPGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD 66
P P + S+ G Q DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD
Sbjct: 13 PRPSAAPSAMHGSQ------KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD 66
Query: 67 KNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATL 126
+ TG+S+GYGFVT + AA RAC DP P IDGR+AN NLA LG +P +L
Sbjct: 67 RQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGA----------KPRSL 116
Query: 127 FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYG--PEYVYPQGIYNP 179
+G + G QQ ++P+ TYG P Y+YP I P
Sbjct: 117 QTGF----------AVGVQQ----------LHPTLIQRTYGLTPHYIYPPAIVQP 151
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T E++R YF ++G+I EA+V+ D T RS+G+GFVTF +P + +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRGPYIGSFG-YQQ 146
T +DG++ + +A R P+++ R +F G +T Y FG +
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMV---TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIED 146
Query: 147 PLPYNYQQGMVYPSYGYATYGPEYV 171
+ +Q + +G+ T+ E V
Sbjct: 147 AMLMFDKQTNRHRGFGFVTFQSEDV 171
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG I +A+++ DK T R +G+GFVTF+ + +
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 89 ACADPTPFIDGRRANCNLA 107
C I+ + C A
Sbjct: 175 VCEIHFHEINNKMVECKKA 193
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 19/199 (9%)
Query: 5 SIPGPGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVI 64
++ G G+ S+ + SPF + K+F+GGL WET +++R YFEQFGE+L+ V+
Sbjct: 138 ALTGSGAMESNEDNAEET-SPF-NREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
Query: 65 TDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPA 124
D TGRS+G+GF+TF+ P+ + +DG+ + A PR + + + A
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMS-KEHHLDGKIIDPKRAI---PREE----QEKTA 247
Query: 125 TLFSG-----STQATRGPYIGSFGYQQPLPYNYQQGMVYPS-YGYATYGPEYVYPQGIYN 178
+F G T+ + FG + P +G+ TY E +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 179 PYQQYVPIYGVPGTVNTAV 197
P Y+ I+G P V A
Sbjct: 308 P---YITIHGKPVEVKRAT 323
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+WET E + RYF +FG+I++ VV+ + +GRS+G+GFVTF +P +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 93 PTPFIDGRRAN---CNLASLGRPR 113
+DGR + CN +L +P+
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPK 91
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 11 SGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG 70
SG+ + + +N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTG
Sbjct: 54 SGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 71 RSKGYGFVTFREPEAARRACADPTPFIDGRRAN--CNLASLGRPRPQVLYGRLRPATLFS 128
RS+G+GF+ F++ + + +DGR + +A P ++ G L P
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE---- 169
Query: 129 GSTQATRGPYIGSFGYQQPL------PYNYQQGMVYPSY 161
+T+ Y G FG + + N ++G V+ ++
Sbjct: 170 -ATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL E E +R YF QFGEI + D + +G+ F+TF+E + ++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 93 PTPFIDGRRANCNLA 107
+ G + +A
Sbjct: 220 KFHTVSGSKCEIKVA 234
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 9 PGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN 68
P SG+ + + +N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D N
Sbjct: 46 PPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 105
Query: 69 TGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN--CNLASLGRPRPQVLYGRLRPATL 126
TGRS+G+GF+ F++ + + +DGR + +A P ++ G L P +
Sbjct: 106 TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPES- 164
Query: 127 FSGSTQATRGPYIGSFGYQQPL------PYNYQQGMVYPSY 161
T+ Y G FG + + N ++G V+ ++
Sbjct: 165 ---PTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E+ E +R YF +FGEI + D + +G+ F+TF+E E ++
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 92 DPTPFIDGRRANCNLA 107
+ G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQAT 134
P +D + + +A R +P+++ R +F G A
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSAN 120
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 89 ACADPTPFIDGRRANCNLA 107
C I+ + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQAT 134
P +D + + +A R +P+++ R +F G A
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSAN 120
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 89 ACADPTPFIDGRRANCNLA 107
C I+ + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ GD K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNNQGGDE-IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGRRAN---CNLASL--GRPRPQVLYGRLRPATLFSGSTQ 132
+P A +DGR + C + R RP+ + + P T S S +
Sbjct: 60 DPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNK 115
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 17 SGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
G+Q ++ K+FVGG+ ++ YF +FG + E V+I D R +G+G
Sbjct: 99 EGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158
Query: 77 FVTFREPEAARRACADPTPFIDGRRANCNLAS 108
F+TF + ++ +A I G++ A
Sbjct: 159 FITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTF++ +A R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 93 PT-PFIDGRRANCNLA 107
+DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+NS D K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNSAGADEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGRRAN 103
+P A +DGR +
Sbjct: 60 DPNCVGTVLASRPHTLDGRNID 81
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 21 YLNSPFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 79
+ P D++ + K+FVGG+ +R YF++FG + E V+I D R +G+GF+T
Sbjct: 101 WQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 160
Query: 80 FREPEAARRACADPTPFIDGRRANCNLAS 108
F + ++ +A I G++ A
Sbjct: 161 FEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 93 PTPFIDGRRAN 103
+DGR +
Sbjct: 71 RPHTLDGRNID 81
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
++ K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF + ++
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 88 RACADPTPFIDGRRANCNLAS 108
+A I G++ A
Sbjct: 169 QAVNMHFHDIMGKKVEVKRAE 189
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F ++A A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 92 DPT-PFIDGRRANCNLAS 108
+ ++GR+ NLA+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D+ K+FVGG++WET + +R +F +GE+ +A+V+ DK TGR +G+GFV F +P
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQV 116
R + ID R + A + R QV
Sbjct: 62 RVLQEKHS-IDTREVDVKRA-MSREEQQV 88
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL E R+YFE +G + + ++ D+ T R +G+GFV+F +A
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 93 PTPFIDGRRANCNLA 107
+ G++ A
Sbjct: 171 TFHDLSGKQVEVKRA 185
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T E++ + F QFG+I ++ +I D+ TGRS+G+GFVTF++ ++ R A
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 93 PT-PFIDGRRANCNLA 107
+DGR N A
Sbjct: 67 MNGQELDGRNITVNEA 82
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLA 107
C I+ + C A
Sbjct: 166 VCEIHFHEINNKMVECKKA 184
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLA 107
C I+ + C A
Sbjct: 166 VCEIHFHEINNKMVECKKA 184
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLA 107
C I+ + C A
Sbjct: 166 VCEIHFHEINNKMVECKKA 184
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T + R F QFGE++++ +I D+ TGRS+G+GFVTF++ ++ + A +
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 93 PT-PFIDGRRANCNLA 107
+DGR N A
Sbjct: 67 MNGKELDGRTITVNEA 82
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D Y + FVGGLAW T +ET+ + F FG+++++ VITD+ TGRS+G+GFVTF ++
Sbjct: 5 DVEY-RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63
Query: 88 RACADPT-PFIDGRRANCNLA 107
A + +DGR N A
Sbjct: 64 DAIENMNGKELDGRNITVNQA 84
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F + AA A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 92 DPTPFIDGRRAN 103
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+WET + +R +F ++GEI V TD TGRS+G+ F+ F EA + A
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG--YQQPLPY 150
I+ ++ + A + +G++ L + + Y G FG + +P+
Sbjct: 117 DEHIINSKKVDPKKA-------KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPF 169
Query: 151 NYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQ 182
+ Q+ + + T+ E V + P Q+
Sbjct: 170 DKQKSQ-RKGFCFITFDSEQVVTDLLKTPKQK 200
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL E E ++ YF QFG I+E + DK + KG+ F+TF +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 93 PTPFIDGRRANCNLASLGRPRPQ 115
P I G+ + A+ P+P+
Sbjct: 197 PKQKIAGKEVDVKRAT---PKPE 216
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV F++ + +
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRGPYIGSFGYQQ 146
+DG+ + R + L G+ P +F G +T+ Y G FG +
Sbjct: 94 TKEHKLDGKLIDP-------KRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIE 146
Query: 147 PLPY------NYQQGMVYPSY 161
+ N ++G + +Y
Sbjct: 147 NIELPMDTKTNERRGFCFVTY 167
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ ET E +++YF FGEI + D T +G+ FVT+ + E ++
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQK 175
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
D Y + FVGGLAW T +E++ F +GEIL++ VITD+ TGRS+G+GFVTF +
Sbjct: 4 ADVEY-RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSM 62
Query: 87 RRACADPT-PFIDGRRANCNLA 107
A + +DGR N A
Sbjct: 63 LDAIENMNGKELDGRNITVNQA 84
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV F+
Sbjct: 16 INASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFK 75
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRG 136
+ + + +DG+ + R + L G+ P +F G +T+
Sbjct: 76 DAVSVDKVLETNEHKLDGKL-------IDPKRAKALKGKEPPKKVFVGGLSPETTEEQIK 128
Query: 137 PYIGSFG 143
Y G FG
Sbjct: 129 QYFGGFG 135
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ ET E +++YF FGEI + D T +G+ FVT+ E ++
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKK 167
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
+ D Y + FVGGLAW T +++ R F +FGE+ ++ +I D+ TGRSKG+ FVTF++ +
Sbjct: 2 AYADNEY-RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDED 60
Query: 85 AARRA 89
+ R A
Sbjct: 61 SMRTA 65
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRGPYIGSFG 143
+DG+ + R + L G+ P +F G +T+ Y G FG
Sbjct: 87 KEHKLDGKL-------IDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 135
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ ET E +++YF FGEI + D T +G+ FVT+ E ++
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKK 167
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEA 85
D Y + FVGGL W T ++++ F ++G+++++ +ITD+ TGRS+G+GFVTF EA
Sbjct: 1 MADVEY-RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEA 59
Query: 86 ARRAC-ADPTPFIDGRRANCNLASLGRP 112
R+A A +DGR N A R
Sbjct: 60 MRQAIEAMNGQDLDGRNITVNEAQSRRS 87
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRGPYIGSFG 143
+DG+ + R + L G+ P +F G +++ Y G+FG
Sbjct: 91 KEHKLDGKL-------IDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFG 139
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRGPYIGSFG 143
+DG+ + R + L G+ P +F G +++ Y G+FG
Sbjct: 108 VLELKEHKLDGKL-------IDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFG 160
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
GD Y + FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTF++ +A
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 87 RRACADPT-PFIDGRRANCNLA 107
+ A +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA-CA 91
K+FVGGL +ET E++ + F ++G++ E VV+ D+ + RS+G+GFVTF PE A+ A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T ++ F QFGE++++ +I D+ TGRS+G+GFVTF++ ++ + A
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 93 PT-PFIDGRRANCNLA 107
+DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRGPYIGSFG 143
+DG+ + R + L G+ P +F G +++ Y G+FG
Sbjct: 90 KEHKLDGKL-------IDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFG 138
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 170
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F+
Sbjct: 138 INASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFK 197
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSG-----STQATRG 136
+ + + +DG+ + R + L G+ P +F G +++
Sbjct: 198 DAASVDKVLELKEHKLDGKLIDPK-------RAKALKGKEPPKKVFVGGLSPDTSEEQIK 250
Query: 137 PYIGSFG 143
Y G+FG
Sbjct: 251 EYFGAFG 257
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T + F Q+GE+L++ +I D+ TGRS+G+GFVTF++ ++ + A
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 93 PT-PFIDGRRANCNLA 107
+DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA-CA 91
K+F+GGL ++T E++ + F ++G+I E VV+ D+ T RS+G+GFVTF P+ A+ A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPAT 125
++G+ + A + P ++ G L P T
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPAT 125
++G+ + A + P ++ G L P T
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,025,466
Number of Sequences: 539616
Number of extensions: 5400069
Number of successful extensions: 13191
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 11805
Number of HSP's gapped (non-prelim): 1434
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)