BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024692
         (264 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4G8D2|DNAK_HERAR Chaperone protein DnaK OS=Herminiimonas arsenicoxydans GN=dnaK PE=3
           SV=1
          Length = 649

 Score = 34.3 bits (77), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 14/109 (12%)

Query: 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM 162
           +G  LSK A++  R +A  E+ +  L  +  T++ EP  AM  GAP+    HL  +  R 
Sbjct: 249 NGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPV----HLTMKITRA 304

Query: 163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILG 211
           + E+  + + +SK  A          L++ +  A VK+ D+   + + G
Sbjct: 305 KLESLVEEL-ISKTLAP---------LSIAIKDAGVKVSDIDDIILVGG 343


>sp|Q8ZAL8|RMUC_YERPE DNA recombination protein RmuC homolog OS=Yersinia pestis GN=rmuC
           PE=3 SV=1
          Length = 477

 Score = 33.9 bits (76), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 91  DSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNL------LKALGTQVAEPLRAMV 144
           D  +   D+  + G +L KA LSY +A  ++ + RGNL       + LG +V  P+  ++
Sbjct: 391 DKVRLFVDDMASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLL 450


>sp|Q8RED8|LDH_FUSNN L-lactate dehydrogenase OS=Fusobacterium nucleatum subsp. nucleatum
           (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
           GN=ldh PE=3 SV=1
          Length = 318

 Score = 33.5 bits (75), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 35  DNVVTDEAELHQH-QRLERLYISTRAGKHFQRDIVR-GVEGYIVTGSKQVEIGTKLSEDS 92
           D +V     L ++ QRLE L  S  A K F  D+V+ G  G  VT +  V+I T    + 
Sbjct: 74  DVIVISVGSLTKNEQRLEELKGSLEAIKSFVPDVVKAGFNGIFVTITNPVDIVTYFVREL 133

Query: 93  RKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKA--LG----TQVAEPLRAMVLG 146
             +  +    +G  L  A L   R  +++      +++A  LG    TQ+A    A + G
Sbjct: 134 SGFPKNRVIGTGTGLDSARLK--RILSEVTNIDSQVIQAYMLGEHGDTQIANFSSATIQG 191

Query: 147 APLDD 151
            P  D
Sbjct: 192 VPFLD 196


>sp|A6T226|DNAK_JANMA Chaperone protein DnaK OS=Janthinobacterium sp. (strain Marseille)
           GN=dnaK PE=3 SV=1
          Length = 650

 Score = 32.3 bits (72), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM 162
           +G  LSK A++  R +A  E+ +  L  +  T++ EP  AM  GAP+    HL  +  R 
Sbjct: 249 NGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPV----HLNLKITRA 304

Query: 163 RQEA 166
           + E+
Sbjct: 305 KLES 308


>sp|P12076|HSP71_LEIMA Heat shock 70-related protein 1, mitochondrial OS=Leishmania major
           GN=HSP70.1 PE=3 SV=3
          Length = 634

 Score = 31.2 bits (69), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 102 TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR 161
           TSG  LSK  ++  R R   EK +  L  A+ T+V  P     + A  D A+H+  R  R
Sbjct: 267 TSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPF----ITANADGAQHIQMRISR 322

Query: 162 MRQEAEAQ 169
            + E   Q
Sbjct: 323 SKFEGITQ 330


>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=NUP2 PE=1 SV=2
          Length = 720

 Score = 31.2 bits (69), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 115 GRARAQMEK----ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD---RMRQEAE 167
           G   AQ++     E  + LKAL  Q    +  +VLG PL D R L  RY+   +   EA 
Sbjct: 75  GTGEAQVDNSPTTESNSRLKALNLQFKAKVDDLVLGKPLADLRPLFTRYELYIKNILEAP 134

Query: 168 AQAIE 172
            ++IE
Sbjct: 135 VKSIE 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,398,715
Number of Sequences: 539616
Number of extensions: 3332030
Number of successful extensions: 13275
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 13250
Number of HSP's gapped (non-prelim): 115
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)