BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024693
MMRCCWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLL
INLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIF
SVRLTLAMQIIGFSVRFSSSFLWIQIYRLGVSYVDAAAPPSSRDADFDLRNSFLSPTTTP
AAAALPSRCSGSDDAVGGSIYDPAYFSSLFEDSQDNKCLLLGQSDGFGDDGSSSGAEVPQ
PKASMGRSFQSIDEENAIGKPQTV

High Scoring Gene Products

Symbol, full name Information P value
AT1G55535 protein from Arabidopsis thaliana 7.5e-57
AT3G13420 protein from Arabidopsis thaliana 9.3e-43

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024693
        (264 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956115 - symbol:AT1G55535 "AT1G55535" speci...   585  7.5e-57   1
TAIR|locus:2092885 - symbol:AT3G13420 "AT3G13420" species...   452  9.3e-43   1


>TAIR|locus:504956115 [details] [associations]
            symbol:AT1G55535 "AT1G55535" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 EMBL:BT015803 EMBL:BT020190
            IPI:IPI00535816 RefSeq:NP_683436.3 UniGene:At.45200 IntAct:Q5XF13
            PRIDE:Q5XF13 EnsemblPlants:AT1G55535.1 GeneID:842001
            KEGG:ath:AT1G55535 TAIR:At1g55535 InParanoid:Q5XF13 OMA:MAMEMIG
            PhylomeDB:Q5XF13 ProtClustDB:CLSN2680836 Genevestigator:Q5XF13
            Uniprot:Q5XF13
        Length = 260

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 128/249 (51%), Positives = 154/249 (61%)

Query:    17 LKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVXXXXXXXXXXXXXXXESS 76
             L+D I   LRDY +LQ +AV LIY QIGCALIGSLGALYNGV               ES+
Sbjct:     7 LRDRIHPWLRDYVKLQSLAVFLIYAQIGCALIGSLGALYNGVLLINLAIALFALVAIESN 66

Query:    77 SQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVR 136
             SQSLGRTYAVLLFC++LLDISWFILFT EIWSIS++ +G FFIFSV+LT+AM++IGF VR
Sbjct:    67 SQSLGRTYAVLLFCALLLDISWFILFTEEIWSISAETYGTFFIFSVKLTMAMEMIGFFVR 126

Query:   137 FSSSFLWIQIYRLGVSYVXXXXXXXXXXXXXXLRNSFXXXXXXXXXXXXXXRCSGSDDAV 196
              SSS LW QIYRLG + V              LRNSF              +CSG+++ +
Sbjct:   127 LSSSLLWFQIYRLGAAIVDTSLPRETDSD---LRNSFLNPPTPAIAR----QCSGAEEIL 179

Query:   197 GGSIYDPAYFSSLFEDSQDN---KCXXXXXXXXXXXXXXXXXAEVPQPKASMGRSFQSID 253
             GGSIYDPAY++SLFE+SQ N                      AE    K+ + RS  SID
Sbjct:   180 GGSIYDPAYYTSLFEESQTNINSPKATQVNHYSAGNNGSPSAAEASHIKSPIFRSLHSID 239

Query:   254 EENAIGKPQ 262
             EE  + KP+
Sbjct:   240 EEKGLKKPE 248


>TAIR|locus:2092885 [details] [associations]
            symbol:AT3G13420 "AT3G13420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:BT031356
            IPI:IPI00528515 RefSeq:NP_187950.2 UniGene:At.49616
            EnsemblPlants:AT3G13420.1 GeneID:820542 KEGG:ath:AT3G13420
            TAIR:At3g13420 eggNOG:NOG301203 HOGENOM:HOG000057293 OMA:CAILLDV
            PhylomeDB:B2GVM5 ProtClustDB:CLSN2918535 Genevestigator:B2GVM5
            Uniprot:B2GVM5
        Length = 242

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 95/157 (60%), Positives = 109/157 (69%)

Query:    17 LKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVXXXXXXXXXXXXXXXESS 76
             L++ I   LRDY RLQ + +ILIY QIGCALIGSLGALYNGV               ES+
Sbjct:     6 LRNRIHNWLRDYVRLQSVVLILIYAQIGCALIGSLGALYNGVVLINLAIALFGLVAIESN 65

Query:    77 SQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSVRLTLAMQIIGFSVR 136
             SQSLGRTYAVLLFC+ILLD+SWFILF+ EIW+ISSD +  F+IFSV+LTLAM+I GF VR
Sbjct:    66 SQSLGRTYAVLLFCAILLDVSWFILFSKEIWNISSDMYQVFYIFSVKLTLAMEIAGFVVR 125

Query:   137 FSSSFLWIQIYRLGVSYVXXXXXXXXXXXXXXLRNSF 173
              SSS LW QIYRLG S +              LRNSF
Sbjct:   126 LSSSLLWFQIYRLGASIIDSPFPRQSDSD---LRNSF 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       204   0.00094  111 3  11 22  0.40    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.59u 0.21s 13.80t   Elapsed:  00:00:00
  Total cpu time:  13.59u 0.21s 13.80t   Elapsed:  00:00:00
  Start:  Mon May 20 17:41:29 2013   End:  Mon May 20 17:41:29 2013

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