Query 024693
Match_columns 264
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 06:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06396 AGTRAP: Angiotensin I 97.2 0.007 1.5E-07 52.7 11.5 96 44-151 20-116 (162)
2 smart00805 AGTRAP Angiotensin 90.4 12 0.00027 33.2 13.3 98 41-150 17-115 (159)
3 PRK12407 flgH flagellar basal 66.2 3.7 8E-05 37.3 1.8 21 196-216 45-65 (221)
4 TIGR03602 streptolysinS bacter 66.0 1.7 3.6E-05 32.6 -0.4 13 4-16 26-38 (56)
5 PRK12698 flgH flagellar basal 56.1 3.6 7.7E-05 37.3 -0.1 20 196-215 44-63 (224)
6 KOG3882 Tetraspanin family int 50.1 47 0.001 28.6 5.7 47 57-103 58-104 (237)
7 PF12805 FUSC-like: FUSC-like 48.4 77 0.0017 28.5 7.0 83 21-111 15-97 (284)
8 PRK12701 flgH flagellar basal 46.9 11 0.00024 34.4 1.6 19 197-215 50-68 (230)
9 PF03348 Serinc: Serine incorp 43.2 16 0.00036 35.7 2.1 52 26-79 45-101 (429)
10 PRK12697 flgH flagellar basal 41.8 24 0.00051 32.4 2.8 20 196-215 48-68 (226)
11 PF09945 DUF2177: Predicted me 40.9 35 0.00075 28.9 3.4 28 79-106 3-30 (128)
12 PF11992 DUF3488: Domain of un 39.8 2.3E+02 0.005 26.3 8.9 74 37-110 107-187 (325)
13 TIGR02897 QoxC cytochrome aa3 38.0 1.1E+02 0.0025 26.3 6.3 59 45-103 118-182 (190)
14 KOG4193 G protein-coupled rece 37.5 1.2E+02 0.0025 31.6 7.2 102 5-108 294-413 (610)
15 PRK11573 hypothetical protein; 37.1 3.4E+02 0.0073 26.3 9.8 27 21-53 37-63 (413)
16 PRK12699 flgH flagellar basal 36.3 10 0.00022 35.2 -0.5 20 196-215 61-87 (246)
17 PRK12700 flgH flagellar basal 35.3 24 0.00051 32.4 1.7 19 197-215 50-70 (230)
18 COG3847 Flp Flp pilus assembly 34.7 85 0.0019 23.8 4.3 43 17-59 1-43 (58)
19 TIGR02842 CyoC cytochrome o ub 33.2 1.4E+02 0.003 25.5 6.0 60 44-103 107-172 (180)
20 TIGR01667 YCCS_YHJK integral m 32.8 2.2E+02 0.0048 29.8 8.4 51 25-77 77-127 (701)
21 COG1742 Uncharacterized conser 32.5 86 0.0019 26.5 4.4 45 59-103 36-80 (109)
22 PF07465 PsaM: Photosystem I p 32.0 74 0.0016 21.2 3.2 25 41-68 4-28 (29)
23 PF11241 DUF3043: Protein of u 31.9 1.1E+02 0.0023 27.3 5.2 24 21-44 63-87 (170)
24 cd02863 Ubiquinol_oxidase_III 31.3 1.4E+02 0.0031 25.6 5.8 59 45-103 116-180 (186)
25 PF07370 DUF1489: Protein of u 30.4 15 0.00032 31.9 -0.4 10 192-201 41-51 (137)
26 PF06781 UPF0233: Uncharacteri 30.3 2E+02 0.0043 23.2 6.0 55 78-135 27-82 (87)
27 PRK11878 psaM photosystem I re 29.8 80 0.0017 21.8 3.2 26 40-68 7-32 (34)
28 TIGR03053 PS_I_psaM photosyste 29.3 75 0.0016 21.1 2.9 25 41-68 4-28 (29)
29 cd02865 Heme_Cu_Oxidase_III_2 29.2 2.2E+02 0.0047 24.1 6.5 58 46-103 116-179 (184)
30 COG0015 PurB Adenylosuccinate 28.6 95 0.0021 31.1 4.8 95 15-110 152-251 (438)
31 KOG4580 Component of vacuolar 28.0 3.8E+02 0.0083 22.9 9.8 75 51-137 21-107 (112)
32 cd00386 Heme_Cu_Oxidase_III_li 27.8 1.9E+02 0.0042 24.1 5.8 59 45-103 114-178 (183)
33 cd03523 NTR_like NTR_like doma 27.0 27 0.00059 26.5 0.6 6 3-8 54-59 (105)
34 TIGR01666 YCCS hypothetical me 26.6 3.7E+02 0.008 28.4 8.8 51 25-77 77-127 (704)
35 CHL00190 psaM photosystem I su 25.8 95 0.0021 20.9 2.9 26 40-68 4-29 (30)
36 PF00510 COX3: Cytochrome c ox 25.0 3E+02 0.0065 24.8 6.9 60 45-104 187-252 (258)
37 PF02694 UPF0060: Uncharacteri 24.9 1.7E+02 0.0037 24.5 4.9 44 59-103 36-79 (107)
38 COG5264 VTC1 Vacuolar transpor 23.8 4.9E+02 0.011 22.6 9.2 78 52-137 37-122 (126)
39 PRK09400 secE preprotein trans 23.1 2.1E+02 0.0044 21.5 4.6 37 19-55 8-53 (61)
40 PLN02194 cytochrome-c oxidase 21.7 2.3E+02 0.0049 26.3 5.6 59 45-103 193-257 (265)
41 PRK02237 hypothetical protein; 21.0 2.7E+02 0.0058 23.5 5.3 45 59-103 37-81 (109)
42 MTH00028 COX3 cytochrome c oxi 20.6 4.5E+02 0.0098 25.2 7.4 60 45-104 226-291 (297)
43 PF12036 DUF3522: Protein of u 20.0 5.3E+02 0.011 22.5 7.2 75 25-101 61-137 (186)
No 1
>PF06396 AGTRAP: Angiotensin II, type I receptor-associated protein (AGTRAP); InterPro: IPR009436 This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=97.17 E-value=0.007 Score=52.68 Aligned_cols=96 Identities=24% Similarity=0.226 Sum_probs=67.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccchhhhhH
Q 024693 44 GCALIGSLGALYNGVLLINLAIALFALVAIESS-SQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFIFSV 122 (264)
Q Consensus 44 ~cAliGSLga~Y~GVl~~nlAiaLFALVAIEsg-Sq~LgRtYAvLL~~~llLDI~Wf~lfa~~IwNi~~~k~G~~~~fsv 122 (264)
..|++| .|+=+++.-.|+.+-..++-||... |-....++.+.+.+++++||+++..|-...-.. -.-
T Consensus 20 tw~~~~--~W~p~sY~f~Nf~~l~~gvWAi~~~dSidav~~~l~~~~~sil~Dii~i~vyf~~~~~~----------~~~ 87 (162)
T PF06396_consen 20 TWACLG--NWLPGSYLFYNFLFLALGVWAIHQRDSIDAVQMALVGLVFSILFDIIHIGVYFPSMNLS----------DTD 87 (162)
T ss_pred HHHHhc--cCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHheeEEeccccccc----------ccc
Confidence 344444 2555666666655444444444332 344677899999999999999988776432211 134
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 024693 123 RLTLAMQIIGFSVRFSSSFLWIQIYRLGV 151 (264)
Q Consensus 123 kl~L~MqiigF~vR~~SslLW~qmwrLG~ 151 (264)
|+.++|-|+.+++|++|.++=-+|||..=
T Consensus 88 ~Fs~~maIinLllKP~s~~~l~r~~reRG 116 (162)
T PF06396_consen 88 RFSAGMAIINLLLKPISCFFLYRMYRERG 116 (162)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999998753
No 2
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=90.38 E-value=12 Score=33.16 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=66.4
Q ss_pred HHHHHHHHhh-hhhhhhhHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccchhh
Q 024693 41 IQIGCALIGS-LGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEIWSISSDGHGAFFI 119 (264)
Q Consensus 41 ~QI~cAliGS-Lga~Y~GVl~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~lfa~~IwNi~~~k~G~~~~ 119 (264)
+=+..|+.|. +-..|.=....-++....|+--=|| ..---|..+.+..++++||+=++.+-...=..+ +
T Consensus 17 ll~~wa~~~~W~p~aY~f~Nf~~l~~~~WAi~~kdS--idaV~m~L~~~~~sI~~DIi~i~i~fp~~~~~d-----~--- 86 (159)
T smart00805 17 LLTTWACLVSWFSGAYAWANFTILALGVWAVAQRDS--IDAIQMFLGGLLATIFLDILLISIFYTEVPLRD-----T--- 86 (159)
T ss_pred HHHHHHHhcccccchhHHHhHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHheeecccccccc-----c---
Confidence 3466777765 3444443444444444444433332 334568888999999999999888766652111 1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 024693 120 FSVRLTLAMQIIGFSVRFSSSFLWIQIYRLG 150 (264)
Q Consensus 120 fsvkl~L~MqiigF~vR~~SslLW~qmwrLG 150 (264)
.++..+|.|+..++|.+|.++=-+|+|..
T Consensus 87 --~~fs~gmaIlnLiLrP~S~~lly~~~~eR 115 (159)
T smart00805 87 --GRFGVGMAILSLLLKPLSCCLVYHMYRER 115 (159)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 25788999999999999999999999864
No 3
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=66.17 E-value=3.7 Score=37.26 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=18.1
Q ss_pred ccccccCcccchhhhcccccc
Q 024693 196 VGGSIYDPAYFSSLFEDSQDN 216 (264)
Q Consensus 196 lgGSIYdpayysSLfed~~~~ 216 (264)
--||||++.++.+||+|.+-.
T Consensus 45 ~~GSl~~~~~~~~Lf~D~rA~ 65 (221)
T PRK12407 45 EGGGLFQPGYNWSLLQDRRAY 65 (221)
T ss_pred CCCccccCCCccccccccccc
Confidence 459999999999999998763
No 4
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=66.02 E-value=1.7 Score=32.64 Aligned_cols=13 Identities=38% Similarity=1.282 Sum_probs=6.0
Q ss_pred ccccCCCCccccc
Q 024693 4 CCWCCSYSSFAHR 16 (264)
Q Consensus 4 cc~~~~~~~~~~~ 16 (264)
|||||+.-++..+
T Consensus 26 cccccc~cc~si~ 38 (56)
T TIGR03602 26 CCCCCCCCCFSIA 38 (56)
T ss_pred eEEEeccEEEEEE
Confidence 5554443445433
No 5
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=56.06 E-value=3.6 Score=37.32 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=17.7
Q ss_pred ccccccCcccchhhhccccc
Q 024693 196 VGGSIYDPAYFSSLFEDSQD 215 (264)
Q Consensus 196 lgGSIYdpayysSLfed~~~ 215 (264)
-.||||++.++.+||+|.+-
T Consensus 44 ~~GSl~~~~~~~~Lf~D~rA 63 (224)
T PRK12698 44 ATGSIFQDSQANSLYSDIKA 63 (224)
T ss_pred CCcccccCCCcccccccccc
Confidence 36999999999999999876
No 6
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=50.06 E-value=47 Score=28.56 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024693 57 GVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFT 103 (264)
Q Consensus 57 GVl~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (264)
++-.+.+.+++++.++.=-.++.|+.+|+++|+..+++.++.-++.-
T Consensus 58 ~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~l~~i~e~~~~i~~~ 104 (237)
T KOG3882|consen 58 AVGGVVFLVGFLGCCGALRESRCLLLSYFILLLLLFIAELAAGILAF 104 (237)
T ss_pred hhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445667788888888888999999999999999999988766554
No 7
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=48.44 E-value=77 Score=28.45 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=54.1
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Q 024693 21 IQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFI 100 (264)
Q Consensus 21 i~~wl~dyd~lQ~lA~~LiY~QI~cAliGSLga~Y~GVl~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~ 100 (264)
+-..+..+.-+.-++++++ =.+++|+|..|.-|+.|-.+.+.++.|++.....+...+.+.=.+++. -.|..
T Consensus 15 ~~~l~~~~~~l~~~~~~~~--~F~~~ml~~~G~r~~~i~~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~G------glwy~ 86 (284)
T PF12805_consen 15 LVGLLFPYPWLLILVLALL--TFFFGMLGVYGPRAATIGFATLLVAVYTMAGPSPGPEALEHALLFLAG------GLWYL 86 (284)
T ss_pred HHHHHhhccHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH------HHHHH
Confidence 3345566655555555444 368899999999999999999999999988887666555554333322 34555
Q ss_pred HhhhhcccCCC
Q 024693 101 LFTHEIWSISS 111 (264)
Q Consensus 101 lfa~~IwNi~~ 111 (264)
+++-=.|-+.|
T Consensus 87 ~lsl~~~~l~p 97 (284)
T PF12805_consen 87 LLSLLWWPLRP 97 (284)
T ss_pred HHHHHHHHHcC
Confidence 55444444444
No 8
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=46.94 E-value=11 Score=34.39 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.3
Q ss_pred cccccCcccchhhhccccc
Q 024693 197 GGSIYDPAYFSSLFEDSQD 215 (264)
Q Consensus 197 gGSIYdpayysSLfed~~~ 215 (264)
-||||.+.+..+||+|.+-
T Consensus 50 ~GSl~~~~~~~~Lf~D~rA 68 (230)
T PRK12701 50 SGAIYSSETALPLFETPRA 68 (230)
T ss_pred CCccccCCCCccccccccc
Confidence 5999999999999999876
No 9
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=43.18 E-value=16 Score=35.74 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=27.3
Q ss_pred hchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH----HHHHHhcCCch
Q 024693 26 RDYDRLQYIAV-ILIYIQIGCALIGSLGALYNGVLLINLAIALF----ALVAIESSSQS 79 (264)
Q Consensus 26 ~dyd~lQ~lA~-~LiY~QI~cAliGSLga~Y~GVl~~nlAiaLF----ALVAIEsgSq~ 79 (264)
+++.-.+++.. +.=|.+..|. +.--.-|.+|+=+.+|+++| ++.-+-.++.+
T Consensus 45 ~~~~~~~~l~~~~~~~~~~~C~--~~~c~G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~ 101 (429)
T PF03348_consen 45 LSPGVESKLKKKIPWFCGFDCP--SDSCVGYSAVYRVSFALALFFFLMALLTIGVKSSR 101 (429)
T ss_pred hhHHHHHHHHHhccccCCCCcc--hHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 66666666666 2224445562 11112256777777777765 45555444433
No 10
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=41.83 E-value=24 Score=32.40 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=16.6
Q ss_pred ccccccCcc-cchhhhccccc
Q 024693 196 VGGSIYDPA-YFSSLFEDSQD 215 (264)
Q Consensus 196 lgGSIYdpa-yysSLfed~~~ 215 (264)
-.||||.+. ++.+||+|.+-
T Consensus 48 ~~GSl~~~~~~~~~Lf~D~RA 68 (226)
T PRK12697 48 APGSIYNPGYAGRPLFEDQRP 68 (226)
T ss_pred CCcceecCCCccccccccccc
Confidence 579999995 56789999876
No 11
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=40.89 E-value=35 Score=28.90 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024693 79 SLGRTYAVLLFCSILLDISWFILFTHEI 106 (264)
Q Consensus 79 ~LgRtYAvLL~~~llLDI~Wf~lfa~~I 106 (264)
+..+.|+..+...+++|.+|+-+.+.++
T Consensus 3 ~~~~~yl~~~~vfl~lD~iWL~~va~~~ 30 (128)
T PF09945_consen 3 KYLIAYLATLVVFLVLDAIWLGFVAKRF 30 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999888777
No 12
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=39.79 E-value=2.3e+02 Score=26.27 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcCCc-----hhhHHHHHHHHHHHHHHHHHHHHhh--hhcccC
Q 024693 37 ILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSSQ-----SLGRTYAVLLFCSILLDISWFILFT--HEIWSI 109 (264)
Q Consensus 37 ~LiY~QI~cAliGSLga~Y~GVl~~nlAiaLFALVAIEsgSq-----~LgRtYAvLL~~~llLDI~Wf~lfa--~~IwNi 109 (264)
++-+..++++.+=+-+..|+..+.+.+.+++.++++++...+ +..|.-+.++..++-+=++=|.+|= +++|++
T Consensus 107 ~l~~fl~~~~~l~~qs~~~~l~~ll~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~l~l~alpl~~vlFl~fPR~~plw~~ 186 (325)
T PF11992_consen 107 LLGLFLLAAAFLFSQSLLFALYLLLFLVLLLAALVLLHQPDSRRSLRQLLRRALKLLLQALPLALVLFLLFPRLGPLWSM 186 (325)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcCC
Confidence 344678899999999999999999999999999999986432 4566677777777776666666543 566876
Q ss_pred C
Q 024693 110 S 110 (264)
Q Consensus 110 ~ 110 (264)
.
T Consensus 187 ~ 187 (325)
T PF11992_consen 187 P 187 (325)
T ss_pred C
Confidence 5
No 13
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=37.95 E-value=1.1e+02 Score=26.35 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHH--HHHHHhcCCchhhHHH-HHHH---HHHHHHHHHHHHHhh
Q 024693 45 CALIGSLGALYNGVLLINLAIALF--ALVAIESSSQSLGRTY-AVLL---FCSILLDISWFILFT 103 (264)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLF--ALVAIEsgSq~LgRtY-AvLL---~~~llLDI~Wf~lfa 103 (264)
....||.=++-||.|..-+.+++. +++.+........+.. ..+- .+==.+|++|..+|.
T Consensus 118 ~~~~~s~fy~lTG~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~e~~~~YWHFvDivWi~lf~ 182 (190)
T TIGR02897 118 IGSYWSSFFVLLGTHGCHVTLGIVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFT 182 (190)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888899999988777776 4455555443332222 1221 222258999999886
No 14
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=37.50 E-value=1.2e+02 Score=31.59 Aligned_cols=102 Identities=25% Similarity=0.346 Sum_probs=70.7
Q ss_pred cccCCCCcccccchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-----------HHHHHHHHHHH----
Q 024693 5 CWCCSYSSFAHRLKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGV-----------LLINLAIALFA---- 69 (264)
Q Consensus 5 c~~~~~~~~~~~~~~ri~~wl~dyd~lQ~lA~~LiY~QI~cAliGSLga~Y~GV-----------l~~nlAiaLFA---- 69 (264)
|.|..-.++|..|..+.+.= .=..++.+=.++-|+=+++.+++.+..+.+.. ..+|+.++||-
T Consensus 294 c~C~hltsFavlm~~~~~~~--~~~~~~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~ 371 (610)
T KOG4193|consen 294 CACNHLTSFAVLMAHSDVAI--EDAVLTLLLDILSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELL 371 (610)
T ss_pred EEeccchhHHHhcccccccc--ccchhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 34446677776665543310 12234455556668888888888877665543 45777777764
Q ss_pred -HHHHhcCCchh--hHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 024693 70 -LVAIESSSQSL--GRTYAVLLFCSILLDISWFILFTHEIWS 108 (264)
Q Consensus 70 -LVAIEsgSq~L--gRtYAvLL~~~llLDI~Wf~lfa~~IwN 108 (264)
|+.++..+.+. -++-|++|=+.+|.=++|+.+.+-++|.
T Consensus 372 fL~~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~leg~hl~~ 413 (610)
T KOG4193|consen 372 FLLGIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLEGFHLYL 413 (610)
T ss_pred HhcccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655555 9999999999999999999999999983
No 15
>PRK11573 hypothetical protein; Provisional
Probab=37.13 E-value=3.4e+02 Score=26.32 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=12.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024693 21 IQTLLRDYDRLQYIAVILIYIQIGCALIGSLGA 53 (264)
Q Consensus 21 i~~wl~dyd~lQ~lA~~LiY~QI~cAliGSLga 53 (264)
+...+++++++ |.-+|++.-+.+-++.
T Consensus 37 l~~l~~~~~~~------Lstiligntl~~i~~~ 63 (413)
T PRK11573 37 VEKLLRKPDRL------ISLVLIGNNLVNILAS 63 (413)
T ss_pred HHHHHhChHHH------HHHHHHHHHHHHHHHH
Confidence 44455555554 4444555444443333
No 16
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=36.25 E-value=10 Score=35.17 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=16.7
Q ss_pred ccccccCcc-------cchhhhccccc
Q 024693 196 VGGSIYDPA-------YFSSLFEDSQD 215 (264)
Q Consensus 196 lgGSIYdpa-------yysSLfed~~~ 215 (264)
-.||||.+. +|.+||+|.+-
T Consensus 61 ~~GSIy~~~~~~~~~~~~~~Lf~D~RA 87 (246)
T PRK12699 61 GNGGIYQAAFDYQGRGRYHPLFEDRRA 87 (246)
T ss_pred CCcceecCCcccccccccccccccccc
Confidence 479999995 67889999876
No 17
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=35.31 E-value=24 Score=32.36 Aligned_cols=19 Identities=47% Similarity=0.735 Sum_probs=15.6
Q ss_pred cccccCcc--cchhhhccccc
Q 024693 197 GGSIYDPA--YFSSLFEDSQD 215 (264)
Q Consensus 197 gGSIYdpa--yysSLfed~~~ 215 (264)
.||||.+. .+.+||+|.+-
T Consensus 50 ~GSl~~~~~~~~~~Lf~D~RA 70 (230)
T PRK12700 50 NGSIYQPSAYGNYPLFEDRRP 70 (230)
T ss_pred CCccccCCCcccccccccccc
Confidence 59999995 45789999876
No 18
>COG3847 Flp Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]
Probab=34.70 E-value=85 Score=23.81 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=32.7
Q ss_pred chHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 024693 17 LKDEIQTLLRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVL 59 (264)
Q Consensus 17 ~~~ri~~wl~dyd~lQ~lA~~LiY~QI~cAliGSLga~Y~GVl 59 (264)
|+.-++.|+||-|-.-.+=-.||=.=|.++|++..+.+.+++-
T Consensus 1 m~~~~~rF~rDE~GAtaiEYglia~lIav~ii~~~~~l~~~l~ 43 (58)
T COG3847 1 MKKLLRRFLRDEDGATAIEYGLIAALIAVVIIAGGSTLGTALK 43 (58)
T ss_pred CcHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556889999988777666667777788888888887777664
No 19
>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=33.19 E-value=1.4e+02 Score=25.49 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=37.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHH--HHHHhcCCchhhHHHHHHH----HHHHHHHHHHHHHhh
Q 024693 44 GCALIGSLGALYNGVLLINLAIALFA--LVAIESSSQSLGRTYAVLL----FCSILLDISWFILFT 103 (264)
Q Consensus 44 ~cAliGSLga~Y~GVl~~nlAiaLFA--LVAIEsgSq~LgRtYAvLL----~~~llLDI~Wf~lfa 103 (264)
.....||.=++-||.|..-+.+++.. ++++.....+..+.+-.-+ ++==.+|++|..+|.
T Consensus 107 ~~~~~~s~fy~lTGlH~lHVi~Gli~l~~~~~~~~~~~~~~~~~~~~e~~~~YWHFvD~vWl~lf~ 172 (180)
T TIGR02842 107 DRSAFLSAFFTLVGTHGLHVTSGLIWIIVMIIQVYKYGLTKINRRRLACLSLFWHFLDIVWICVFT 172 (180)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888999999888777774 4555444333322222211 222258999999886
No 20
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=32.84 E-value=2.2e+02 Score=29.78 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=37.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcCC
Q 024693 25 LRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSS 77 (264)
Q Consensus 25 l~dyd~lQ~lA~~LiY~QI~cAliGSLga~Y~GVl~~nlAiaLFALVAIEsgS 77 (264)
+..|.-+.-++ |+=.=.+.+|+|++|.-|..|..+.|.+++|++...+...
T Consensus 77 l~~~p~~~~~~--l~~~tf~~~mlga~G~r~~~I~f~~L~~aiytml~~~~~~ 127 (701)
T TIGR01667 77 LFPKPWLFPFL--LTLLTFGFILLGALGQRYATIAFASLLAAIYTMLGAGEVP 127 (701)
T ss_pred HhcchHHHHHH--HHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHcCccccc
Confidence 34444443333 3334567899999999999999999999999999977443
No 21
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=32.55 E-value=86 Score=26.53 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024693 59 LLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFT 103 (264)
Q Consensus 59 l~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (264)
+++.+.+++||+.+-=.....-||+||.-=..-+..-..|.-..-
T Consensus 36 l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vd 80 (109)
T COG1742 36 LPGALSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVD 80 (109)
T ss_pred HHHHHHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHc
Confidence 567788999999998778888999999887777777788875543
No 22
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=32.03 E-value=74 Score=21.23 Aligned_cols=25 Identities=36% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 024693 41 IQIGCALIGSLGALYNGVLLINLAIALF 68 (264)
Q Consensus 41 ~QI~cAliGSLga~Y~GVl~~nlAiaLF 68 (264)
.||..|++-+ +-+|++...|+.+||
T Consensus 4 ~Qi~iAL~~A---l~~~iLA~rLg~~LY 28 (29)
T PF07465_consen 4 SQIFIALVIA---LITGILALRLGKELY 28 (29)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHc
Confidence 5888888754 568999999998886
No 23
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=31.93 E-value=1.1e+02 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=15.9
Q ss_pred HHHHhhch-HHHHHHHHHHHHHHHH
Q 024693 21 IQTLLRDY-DRLQYIAVILIYIQIG 44 (264)
Q Consensus 21 i~~wl~dy-d~lQ~lA~~LiY~QI~ 44 (264)
.+.|+||| |+=.+++.+++.+=++
T Consensus 63 ~Rr~vRD~VDsR~~i~e~fmP~alv 87 (170)
T PF11241_consen 63 VRRYVRDYVDSRRNIGEFFMPVALV 87 (170)
T ss_pred hhhhhhhhhhcccchHHHHHHHHHH
Confidence 56788888 4445777777766443
No 24
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=31.34 E-value=1.4e+02 Score=25.57 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=36.2
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHH--HHHHhcCCchhhH--HHHHH--HHHHHHHHHHHHHHhh
Q 024693 45 CALIGSLGALYNGVLLINLAIALFA--LVAIESSSQSLGR--TYAVL--LFCSILLDISWFILFT 103 (264)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLFA--LVAIEsgSq~LgR--tYAvL--L~~~llLDI~Wf~lfa 103 (264)
....||.=++-||.|..-+.+++.. ++.+........+ .+.+- -.+==.+|++|+.+|.
T Consensus 116 ~~~~~s~fy~ltg~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvD~vWl~lf~ 180 (186)
T cd02863 116 RSAFLSAFFTLVGTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIFVFT 180 (186)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899998887777665 4444433332222 22221 1222258999999986
No 25
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.40 E-value=15 Score=31.86 Aligned_cols=10 Identities=50% Similarity=1.169 Sum_probs=8.9
Q ss_pred CCCcc-ccccc
Q 024693 192 SDDAV-GGSIY 201 (264)
Q Consensus 192 ~~~il-gGSIY 201 (264)
.||+| |||||
T Consensus 41 ~~Ell~GGSlY 51 (137)
T PF07370_consen 41 ADELLDGGSLY 51 (137)
T ss_pred HHHhccCCcEE
Confidence 57999 99998
No 26
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=30.28 E-value=2e+02 Score=23.15 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-CCccchhhhhHHHHHHHHHHHHHH
Q 024693 78 QSLGRTYAVLLFCSILLDISWFILFTHEIWSISS-DGHGAFFIFSVRLTLAMQIIGFSV 135 (264)
Q Consensus 78 q~LgRtYAvLL~~~llLDI~Wf~lfa~~IwNi~~-~k~G~~~~fsvkl~L~MqiigF~v 135 (264)
+.--|-|+.+.+..+++-++|.+.|---=-.|-+ ++.|.- -.-+.++..++||.+
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~W---N~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNW---NLAIGFGLMIVGFLM 82 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccch---HHHHHHHHHHHHHHH
Confidence 4556789999999999999999987422222222 355543 112456666666654
No 27
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=29.84 E-value=80 Score=21.75 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 024693 40 YIQIGCALIGSLGALYNGVLLINLAIALF 68 (264)
Q Consensus 40 Y~QI~cAliGSLga~Y~GVl~~nlAiaLF 68 (264)
-.||..||+- ++.+||+..-|+.+||
T Consensus 7 d~Qi~iaL~~---Al~~giLA~RLG~~Ly 32 (34)
T PRK11878 7 DTQVFVALVV---ALHAGVLALRLGTSLY 32 (34)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 4688888875 4578999999998886
No 28
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=29.31 E-value=75 Score=21.10 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 024693 41 IQIGCALIGSLGALYNGVLLINLAIALF 68 (264)
Q Consensus 41 ~QI~cAliGSLga~Y~GVl~~nlAiaLF 68 (264)
.||..|++- ++-+|++..-|+.+|+
T Consensus 4 ~Qi~iaL~~---Al~~~iLA~rLg~~Ly 28 (29)
T TIGR03053 4 SQIFIALVI---ALIAGILALRLGKELY 28 (29)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 488888875 4568899999988875
No 29
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=29.23 E-value=2.2e+02 Score=24.15 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHH--HHHHHhcCCchhhHHHHHH----HHHHHHHHHHHHHHhh
Q 024693 46 ALIGSLGALYNGVLLINLAIALF--ALVAIESSSQSLGRTYAVL----LFCSILLDISWFILFT 103 (264)
Q Consensus 46 AliGSLga~Y~GVl~~nlAiaLF--ALVAIEsgSq~LgRtYAvL----L~~~llLDI~Wf~lfa 103 (264)
...||.=++-||.|..-+.+++. ++++......+..+.+-.- -++==.+|++|+.+|.
T Consensus 116 ~~~~s~f~~ltg~H~lHV~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~yWHFvd~vWl~lf~ 179 (184)
T cd02865 116 NPAGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLVLLA 179 (184)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888876666655 3444444443332222222 2222358999998775
No 30
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=28.60 E-value=95 Score=31.14 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=64.8
Q ss_pred ccchHHHHHHh----hchHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 024693 15 HRLKDEIQTLL----RDYDRLQYIAVILIYIQIGCALIGSLGALYN-GVLLINLAIALFALVAIESSSQSLGRTYAVLLF 89 (264)
Q Consensus 15 ~~~~~ri~~wl----~dyd~lQ~lA~~LiY~QI~cAliGSLga~Y~-GVl~~nlAiaLFALVAIEsgSq~LgRtYAvLL~ 89 (264)
.-++.|+..|+ |++++|+....-.+..||+-| .|.+++.-. |--+-....-..+|-.-+.+.|-.-|-|-.=++
T Consensus 152 tT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~Ga-~Gt~Aa~~~~~~~ve~~v~e~LGL~~~p~stq~~~RD~~ae~~ 230 (438)
T COG0015 152 TTFGKKFANWLAELLRHLERLEEAEERIIVGKIGGA-VGTLAALGDLGAEVEERVAEKLGLKPAPISTQVSPRDRIAEFF 230 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-hhhHhhcCchhHHHHHHHHHHcCCCCCCCCcccccchHHHHHH
Confidence 55788888887 889999888777777777633 455544433 222233334455555566666888888877777
Q ss_pred HHHHHHHHHHHHhhhhcccCC
Q 024693 90 CSILLDISWFILFTHEIWSIS 110 (264)
Q Consensus 90 ~~llLDI~Wf~lfa~~IwNi~ 110 (264)
..+.+=-.=+.=|+++||+..
T Consensus 231 ~~La~i~~sl~k~a~dIr~l~ 251 (438)
T COG0015 231 SALALLAGSLEKFARDIRLLQ 251 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888999999644
No 31
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=28.03 E-value=3.8e+02 Score=22.86 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=44.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc--c--------cCCC--CCccchh
Q 024693 51 LGALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFTHEI--W--------SISS--DGHGAFF 118 (264)
Q Consensus 51 Lga~Y~GVl~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~lfa~~I--w--------Ni~~--~k~G~~~ 118 (264)
|.|+=-.|+++.++++||..+- ++++.-|.+.+..-+.=.+ |+..+ | +-.| +.+|-..
T Consensus 21 l~WL~~tvlLg~l~~~l~n~~~------~~g~~~a~v~t~vaif~~~----ya~~lYlwRa~~I~~R~~~pyDd~~GP~~ 90 (112)
T KOG4580|consen 21 LSWLSVTVLLGGLGFALYNSGD------RLGILSAYVYTLVAIFCGF----YALFLYLWRASMIRQRSPGPYDDRLGPTL 90 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCCCCCcccchH
Confidence 3455556778888888887664 7888877776665554433 33333 3 3344 6788641
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 024693 119 IFSVRLTLAMQIIGFSVRF 137 (264)
Q Consensus 119 ~fsvkl~L~MqiigF~vR~ 137 (264)
+ ++ .+++--++-|++||
T Consensus 91 v-~~-vl~valivN~~~~f 107 (112)
T KOG4580|consen 91 V-CV-VLLVALIVNFILAF 107 (112)
T ss_pred H-HH-HHHHHHHHHHHHhh
Confidence 1 21 24455566777765
No 32
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=27.76 E-value=1.9e+02 Score=24.10 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=35.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHH--HhcCCchhh-HHHHHH---HHHHHHHHHHHHHHhh
Q 024693 45 CALIGSLGALYNGVLLINLAIALFALVA--IESSSQSLG-RTYAVL---LFCSILLDISWFILFT 103 (264)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLFALVA--IEsgSq~Lg-RtYAvL---L~~~llLDI~Wf~lfa 103 (264)
....||.=++-+|.|..-+.+++..+.- +-....+.. +.+..+ -++==.+|++|+.+|+
T Consensus 114 ~~~~~s~f~~ltglH~~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvd~vWl~lf~ 178 (183)
T cd00386 114 DSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWLFLFP 178 (183)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999998888887765543 332222221 222222 2222358999999886
No 33
>cd03523 NTR_like NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.
Probab=27.04 E-value=27 Score=26.49 Aligned_cols=6 Identities=50% Similarity=1.530 Sum_probs=4.1
Q ss_pred cccccC
Q 024693 3 RCCWCC 8 (264)
Q Consensus 3 ~cc~~~ 8 (264)
.|||||
T Consensus 54 ~~~~c~ 59 (105)
T cd03523 54 ACCPCH 59 (105)
T ss_pred cccccC
Confidence 477776
No 34
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=26.60 E-value=3.7e+02 Score=28.36 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=37.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcCC
Q 024693 25 LRDYDRLQYIAVILIYIQIGCALIGSLGALYNGVLLINLAIALFALVAIESSS 77 (264)
Q Consensus 25 l~dyd~lQ~lA~~LiY~QI~cAliGSLga~Y~GVl~~nlAiaLFALVAIEsgS 77 (264)
+.+|.-+.-++++ =.=.+.+|+|++|.=|..|-.++|.+++|+....+...
T Consensus 77 l~~~p~lf~~~l~--~~tf~~~mlga~G~Rya~Iaf~tLliaiytmlg~~~~~ 127 (704)
T TIGR01666 77 LFGKPWLFAVGLT--VSTFGFIMLGAVGQRYATIAFGSLLVALYTMLGYIEVN 127 (704)
T ss_pred HhcCcHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 3444444333333 23467889999999999999999999999999977544
No 35
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=25.84 E-value=95 Score=20.88 Aligned_cols=26 Identities=46% Similarity=0.462 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 024693 40 YIQIGCALIGSLGALYNGVLLINLAIALF 68 (264)
Q Consensus 40 Y~QI~cAliGSLga~Y~GVl~~nlAiaLF 68 (264)
-.||..|++- |+.+|++..-|+.+||
T Consensus 4 d~Qi~iAL~~---Al~~~iLA~rLg~~LY 29 (30)
T CHL00190 4 DSQIFIALFL---ALTTGILAIRLGTALY 29 (30)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 3588888875 5578899999888876
No 36
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=25.03 E-value=3e+02 Score=24.81 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=36.6
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhc----CCchhhHHHH--HHHHHHHHHHHHHHHHhhh
Q 024693 45 CALIGSLGALYNGVLLINLAIALFALVAIES----SSQSLGRTYA--VLLFCSILLDISWFILFTH 104 (264)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLFALVAIEs----gSq~LgRtYA--vLL~~~llLDI~Wf~lfa~ 104 (264)
-+..||.=++-||.|..-+.++++.+..+=. +.-+-.|... ...++==-+|++|+.+|.-
T Consensus 187 ~~~~gS~fy~lTG~Hg~HV~~G~~~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHFVDvvWl~lf~~ 252 (258)
T PF00510_consen 187 DSVYGSFFYLLTGFHGLHVIIGLIFLIIVLFRMLRGHFSPERHLGFEAAAWYWHFVDVVWLFLFPL 252 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BTTB-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhcchHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999888887754321 1111111111 1122223689999999863
No 37
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=24.91 E-value=1.7e+02 Score=24.54 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024693 59 LLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFT 103 (264)
Q Consensus 59 l~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (264)
+++.+.+++||.+.-=.. +.-||+||+==..-+.+-+.|.-..-
T Consensus 36 ~~G~~~L~lfg~l~Tl~p-~~fGRvYAAYGGvfI~~Sl~W~w~vd 79 (107)
T PF02694_consen 36 LPGALSLALFGWLLTLQP-AAFGRVYAAYGGVFIVASLLWGWLVD 79 (107)
T ss_pred hhHHHHHHHHHHHhhcCc-ccchhHHHHhhhhHHHHHHHHHhhhc
Confidence 567788899999887444 78999999998888888888875543
No 38
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=23.78 E-value=4.9e+02 Score=22.62 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=42.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH-HHhhhhc-----ccCCC--CCccchhhhhHH
Q 024693 52 GALYNGVLLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWF-ILFTHEI-----WSISS--DGHGAFFIFSVR 123 (264)
Q Consensus 52 ga~Y~GVl~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf-~lfa~~I-----wNi~~--~k~G~~~~fsvk 123 (264)
.|+=-.|+++.++++||..+- ++++.-|...+..-+.=.+|- -+|..+- ++-.| |++|-. +-++
T Consensus 37 ~wl~~~vllg~l~~~l~n~~~------~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R~~~pyDD~~GP~-lv~v- 108 (126)
T COG5264 37 SWLSVTVLLGGLGFALYNSGD------RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQRSAGPYDDRLGPT-LVCV- 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCc-hhHH-
Confidence 444456777788888887664 788887777666554433331 1222221 23333 678863 1122
Q ss_pred HHHHHHHHHHHHhh
Q 024693 124 LTLAMQIIGFSVRF 137 (264)
Q Consensus 124 l~L~MqiigF~vR~ 137 (264)
+++.--++.|+++|
T Consensus 109 vL~valivNf~~~f 122 (126)
T COG5264 109 VLLVALIVNFFLAF 122 (126)
T ss_pred HHHHHHHHHHhhcc
Confidence 23444456666665
No 39
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=23.11 E-value=2.1e+02 Score=21.50 Aligned_cols=37 Identities=24% Similarity=0.551 Sum_probs=23.8
Q ss_pred HHHHHHhhchHHH---------HHHHHHHHHHHHHHHHHhhhhhhh
Q 024693 19 DEIQTLLRDYDRL---------QYIAVILIYIQIGCALIGSLGALY 55 (264)
Q Consensus 19 ~ri~~wl~dyd~l---------Q~lA~~LiY~QI~cAliGSLga~Y 55 (264)
..++++++||-|+ +++-.+.--.=+|.+++|.+|++.
T Consensus 8 e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 8 ENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 334445556678999999999864
No 40
>PLN02194 cytochrome-c oxidase
Probab=21.71 E-value=2.3e+02 Score=26.35 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=36.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHH--HHhcCCchhhHHHH----HHHHHHHHHHHHHHHHhh
Q 024693 45 CALIGSLGALYNGVLLINLAIALFALV--AIESSSQSLGRTYA----VLLFCSILLDISWFILFT 103 (264)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLFALV--AIEsgSq~LgRtYA----vLL~~~llLDI~Wf~lfa 103 (264)
-...||.=++-||.|..-+.+++..+. .+..........+. ..-++==.+|++|+.+|.
T Consensus 193 ~~~fgS~Fy~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~a~YWHFVDvVWl~Lf~ 257 (265)
T PLN02194 193 DSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFV 257 (265)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889998877777766544 33333222222222 223334468999999986
No 41
>PRK02237 hypothetical protein; Provisional
Probab=21.02 E-value=2.7e+02 Score=23.54 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024693 59 LLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFILFT 103 (264)
Q Consensus 59 l~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (264)
+++.+.+++||.+.-=.....-||+||+==..-+.+-+.|.-..-
T Consensus 37 ~pg~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vd 81 (109)
T PRK02237 37 LPGALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVD 81 (109)
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhc
Confidence 566778889998886333244899999988888888888875443
No 42
>MTH00028 COX3 cytochrome c oxidase subunit III; Provisional
Probab=20.59 E-value=4.5e+02 Score=25.17 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=36.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHH--hcCCchhhHHH----HHHHHHHHHHHHHHHHHhhh
Q 024693 45 CALIGSLGALYNGVLLINLAIALFALVAI--ESSSQSLGRTY----AVLLFCSILLDISWFILFTH 104 (264)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLFALVAI--EsgSq~LgRtY----AvLL~~~llLDI~Wf~lfa~ 104 (264)
-...||.=++-||.|..-+.+++..+..+ -.......+.+ -...++==.+|++|+.+|.-
T Consensus 226 dsvygS~Fy~lTGfHglHViiG~i~L~v~l~r~~~g~~s~~~~~~~e~~a~YWHFVDvVWLfLf~~ 291 (297)
T MTH00028 226 DSVYGSTFFMLTGTHGLHVLVGTTFLIVCFIRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVF 291 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888999999887777776655433 22222222211 12234445689999999863
No 43
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=20.02 E-value=5.3e+02 Score=22.48 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=45.6
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH--HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 024693 25 LRDYDRLQYIAVILIYIQIGCALIGSLGALYNGV--LLINLAIALFALVAIESSSQSLGRTYAVLLFCSILLDISWFIL 101 (264)
Q Consensus 25 l~dyd~lQ~lA~~LiY~QI~cAliGSLga~Y~GV--l~~nlAiaLFALVAIEsgSq~LgRtYAvLL~~~llLDI~Wf~l 101 (264)
..+|++||.+..+.--.-+-+-++ .++-+ +-. -......+++-.++.|.+..++.-+=...+.+.+++=+.|..-
T Consensus 61 ~~~~~~L~~~~~~~s~~~~~vtl~-~~a~~-~~~~~~~l~~~~~~~~ai~~~~~~~~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 61 IMDWHRLQNIDFIGSFLSIWVTLC-AMARL-DEPLKSVLHYFGALVIAIFQQKDRWSLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred echHHHHHHHHHHHHHHHHHHHHH-HhccC-CHHHHHHHHHHHHHHHHHHHhhCcccchhhHHHHHHHHHHHHHHHhee
Confidence 478999997655433322222222 11100 111 1223445666778889999998888888888888888887654
Done!