Query 024693
Match_columns 264
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_M Photosystem 1 reaction 22.0 67 0.0023 20.8 2.6 25 41-68 6-30 (31)
2 1o9a_B FNBB, fibronectin bindi 12.3 93 0.0032 20.7 1.5 19 227-245 8-26 (36)
3 3mp7_B Preprotein translocase 12.2 2E+02 0.0069 20.5 3.4 39 19-57 6-53 (61)
4 4hw8_A Bacterial extracellular 12.1 46 0.0016 28.4 0.0 7 3-9 13-19 (420)
5 3dve_B Voltage-dependent N-typ 11.7 1.1E+02 0.0039 18.7 1.6 10 80-89 2-11 (23)
6 2ww9_B Protein transport prote 10.7 5.4E+02 0.018 19.4 5.5 42 18-59 22-72 (80)
7 1rh5_B Preprotein translocase 9.9 3.5E+02 0.012 20.0 4.1 26 33-58 33-58 (74)
8 2wwb_B SEC61gamma, protein tra 9.4 2.2E+02 0.0074 20.9 2.8 24 33-56 32-55 (68)
9 3dvk_B Voltage-dependent R-typ 9.2 1.5E+02 0.005 18.2 1.5 10 80-89 3-12 (23)
10 3arc_T Photosystem II reaction 8.0 2.8E+02 0.0095 18.1 2.5 17 54-70 5-21 (32)
No 1
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=22.01 E-value=67 Score=20.78 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 024693 41 IQIGCALIGSLGALYNGVLLINLAIALF 68 (264)
Q Consensus 41 ~QI~cAliGSLga~Y~GVl~~nlAiaLF 68 (264)
.||..|++-+ +-+|+++..|+.+||
T Consensus 6 ~Qi~iAL~~A---l~~~iLA~rLg~~LY 30 (31)
T 1jb0_M 6 TQVYVALVIA---LLPAVLAFRLSTELY 30 (31)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHc
Confidence 5888888764 467889988888775
No 2
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=12.32 E-value=93 Score=20.69 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=11.2
Q ss_pred CCCCCCCCCccCCCCcccc
Q 024693 227 FGDDGSSSGAEVPQPKASM 245 (264)
Q Consensus 227 ~~~~~s~s~~~~~~~k~~~ 245 (264)
-+++|||...|.+.+|-++
T Consensus 8 ~gqsgsttevedskpk~si 26 (36)
T 1o9a_B 8 QGQSGSTTEVEDSKPKLSI 26 (36)
T ss_dssp -----CCBCCCCSCCCCBC
T ss_pred cccCCCceeeecCCcceEE
Confidence 3578889888888887665
No 3
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.17 E-value=2e+02 Score=20.53 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHhhchHHHH---------HHHHHHHHHHHHHHHHhhhhhhhhh
Q 024693 19 DEIQTLLRDYDRLQ---------YIAVILIYIQIGCALIGSLGALYNG 57 (264)
Q Consensus 19 ~ri~~wl~dyd~lQ---------~lA~~LiY~QI~cAliGSLga~Y~G 57 (264)
+++++|++|+-++- ++-.+.--.=++.+++|.+|+..-=
T Consensus 6 e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 6 ERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp --CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555543 2334444456788889998887543
No 4
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=12.15 E-value=46 Score=28.37 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred cccccCC
Q 024693 3 RCCWCCS 9 (264)
Q Consensus 3 ~cc~~~~ 9 (264)
+|||||+
T Consensus 13 ~~~~~~~ 19 (420)
T 4hw8_A 13 LYFQGCG 19 (420)
T ss_dssp -------
T ss_pred ceeeccC
Confidence 3555554
No 5
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=11.75 E-value=1.1e+02 Score=18.67 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=7.9
Q ss_pred hhHHHHHHHH
Q 024693 80 LGRTYAVLLF 89 (264)
Q Consensus 80 LgRtYAvLL~ 89 (264)
.||+||.||.
T Consensus 2 VGKiYAallI 11 (23)
T 3dve_B 2 MGKVYAALMI 11 (26)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4899998875
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=10.70 E-value=5.4e+02 Score=19.41 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=27.6
Q ss_pred hHHHHHHhhchHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 024693 18 KDEIQTLLRDYDRL---------QYIAVILIYIQIGCALIGSLGALYNGVL 59 (264)
Q Consensus 18 ~~ri~~wl~dyd~l---------Q~lA~~LiY~QI~cAliGSLga~Y~GVl 59 (264)
.+.+++|++|+-|+ +++-.++.-.=+|.+++|.+|+.---||
T Consensus 22 ~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI~ 72 (80)
T 2ww9_B 22 VEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH 72 (80)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666554 3455566667789999999998754433
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.87 E-value=3.5e+02 Score=20.01 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhH
Q 024693 33 YIAVILIYIQIGCALIGSLGALYNGV 58 (264)
Q Consensus 33 ~lA~~LiY~QI~cAliGSLga~Y~GV 58 (264)
++-.+.--.=+|.+++|.+|+..-=+
T Consensus 33 EF~~iak~~~iG~~imG~IGfiIkli 58 (74)
T 1rh5_B 33 EYLAVAKVTALGISLLGIIGYIIHVP 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555668999999999875433
No 8
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=9.45 E-value=2.2e+02 Score=20.86 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 024693 33 YIAVILIYIQIGCALIGSLGALYN 56 (264)
Q Consensus 33 ~lA~~LiY~QI~cAliGSLga~Y~ 56 (264)
++-.++--.=+|.+++|.+|+.--
T Consensus 32 Ef~~iak~~~iG~~i~G~IGf~Ik 55 (68)
T 2wwb_B 32 EFQKIAMATAIGFAIMGFIGFFVK 55 (68)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556688999999998743
No 9
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=9.20 E-value=1.5e+02 Score=18.17 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=8.0
Q ss_pred hhHHHHHHHH
Q 024693 80 LGRTYAVLLF 89 (264)
Q Consensus 80 LgRtYAvLL~ 89 (264)
.||.||.+|.
T Consensus 3 VGKiYA~llI 12 (23)
T 3dvk_B 3 MGKIYAAMMI 12 (26)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5899998875
No 10
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=7.98 E-value=2.8e+02 Score=18.11 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q 024693 54 LYNGVLLINLAIALFAL 70 (264)
Q Consensus 54 ~Y~GVl~~nlAiaLFAL 70 (264)
+|+=++..++++-.||+
T Consensus 5 vYt~ll~~tlgiiFFAI 21 (32)
T 3arc_T 5 TYVFIFACIIALFFFAI 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45556666666666655
Done!